Multiple sequence alignment - TraesCS5D01G263000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G263000 chr5D 100.000 4950 0 0 1 4950 368979340 368984289 0.000000e+00 9142
1 TraesCS5D01G263000 chr5D 82.440 2836 377 56 1228 3973 407980632 407983436 0.000000e+00 2366
2 TraesCS5D01G263000 chr5D 85.161 620 79 6 3339 3947 407825501 407826118 1.510000e-174 623
3 TraesCS5D01G263000 chr5D 84.766 256 36 3 2011 2266 407818017 407818269 2.290000e-63 254
4 TraesCS5D01G263000 chr5D 76.570 414 69 17 2828 3219 407824960 407825367 8.400000e-48 202
5 TraesCS5D01G263000 chr5B 95.520 3594 103 23 593 4141 437177305 437180885 0.000000e+00 5692
6 TraesCS5D01G263000 chr5B 90.774 607 41 8 1 598 437176663 437177263 0.000000e+00 797
7 TraesCS5D01G263000 chr5B 91.623 191 15 1 4479 4668 437181117 437181307 3.800000e-66 263
8 TraesCS5D01G263000 chr5B 87.013 231 14 3 4265 4494 437180884 437181099 3.830000e-61 246
9 TraesCS5D01G263000 chr5B 92.208 77 5 1 4697 4773 437181446 437181521 1.880000e-19 108
10 TraesCS5D01G263000 chr5A 83.010 618 92 6 3341 3947 513708637 513709252 9.370000e-152 547
11 TraesCS5D01G263000 chr5A 82.006 339 47 9 1980 2309 513281659 513281992 4.880000e-70 276
12 TraesCS5D01G263000 chr3B 82.149 549 67 15 1 521 382711484 382710939 4.550000e-120 442
13 TraesCS5D01G263000 chr3B 93.893 131 7 1 4540 4669 570934203 570934333 3.910000e-46 196
14 TraesCS5D01G263000 chr3B 90.411 146 10 3 4527 4669 793003094 793003238 6.540000e-44 189
15 TraesCS5D01G263000 chr3A 81.215 543 70 13 1 514 383098904 383098365 4.610000e-110 409
16 TraesCS5D01G263000 chr3A 88.690 168 17 2 4100 4267 91233270 91233105 2.340000e-48 204
17 TraesCS5D01G263000 chr3A 88.690 168 17 2 4100 4267 237079262 237079097 2.340000e-48 204
18 TraesCS5D01G263000 chr3A 87.879 99 9 1 4849 4944 561252679 561252777 4.050000e-21 113
19 TraesCS5D01G263000 chr4A 80.776 541 64 20 8 512 658407574 658407038 2.160000e-103 387
20 TraesCS5D01G263000 chr4A 91.139 158 12 2 4110 4267 472581401 472581556 3.880000e-51 213
21 TraesCS5D01G263000 chr4A 95.276 127 4 2 4543 4668 46564748 46564623 3.020000e-47 200
22 TraesCS5D01G263000 chr3D 96.403 139 5 0 4136 4274 448736469 448736607 3.850000e-56 230
23 TraesCS5D01G263000 chr2B 97.761 134 2 1 4137 4269 550044049 550044182 3.850000e-56 230
24 TraesCS5D01G263000 chr7B 96.377 138 4 1 4135 4271 512744204 512744341 4.990000e-55 226
25 TraesCS5D01G263000 chr7B 91.667 144 10 2 4531 4672 482861745 482861888 1.090000e-46 198
26 TraesCS5D01G263000 chr7B 90.476 147 11 2 4539 4684 89765908 89765764 1.820000e-44 191
27 TraesCS5D01G263000 chr1A 89.881 168 15 2 4100 4267 286659572 286659407 1.080000e-51 215
28 TraesCS5D01G263000 chr2A 88.690 168 17 2 4100 4267 457762220 457762055 2.340000e-48 204
29 TraesCS5D01G263000 chr2A 88.690 168 17 2 4100 4267 628155368 628155203 2.340000e-48 204
30 TraesCS5D01G263000 chr6A 90.604 149 10 4 4529 4674 23628608 23628755 1.410000e-45 195
31 TraesCS5D01G263000 chr6B 91.096 146 8 5 4524 4668 10221077 10220936 5.060000e-45 193
32 TraesCS5D01G263000 chr6B 91.489 141 10 2 4543 4682 207511027 207510888 5.060000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G263000 chr5D 368979340 368984289 4949 False 9142.0 9142 100.0000 1 4950 1 chr5D.!!$F1 4949
1 TraesCS5D01G263000 chr5D 407980632 407983436 2804 False 2366.0 2366 82.4400 1228 3973 1 chr5D.!!$F3 2745
2 TraesCS5D01G263000 chr5D 407824960 407826118 1158 False 412.5 623 80.8655 2828 3947 2 chr5D.!!$F4 1119
3 TraesCS5D01G263000 chr5B 437176663 437181521 4858 False 1421.2 5692 91.4276 1 4773 5 chr5B.!!$F1 4772
4 TraesCS5D01G263000 chr5A 513708637 513709252 615 False 547.0 547 83.0100 3341 3947 1 chr5A.!!$F2 606
5 TraesCS5D01G263000 chr3B 382710939 382711484 545 True 442.0 442 82.1490 1 521 1 chr3B.!!$R1 520
6 TraesCS5D01G263000 chr3A 383098365 383098904 539 True 409.0 409 81.2150 1 514 1 chr3A.!!$R3 513
7 TraesCS5D01G263000 chr4A 658407038 658407574 536 True 387.0 387 80.7760 8 512 1 chr4A.!!$R2 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 589 0.104120 GGGGTGTGTTGCAGGTTTTC 59.896 55.0 0.0 0.0 0.00 2.29 F
1602 1715 0.917533 AAGAGGCATGTGATCCAGCT 59.082 50.0 0.0 0.0 0.00 4.24 F
2555 2702 0.693049 ATCGCCAAAGGGAGAACTGT 59.307 50.0 0.0 0.0 46.54 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1798 0.037590 TCCACTTTTAGCCGCCACAT 59.962 50.0 0.0 0.0 0.00 3.21 R
3141 3346 0.451783 CAGGCAAATACCGCAGAACC 59.548 55.0 0.0 0.0 33.69 3.62 R
4386 4660 1.056660 AGAGAAACAAGAGGGCCGAA 58.943 50.0 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.487714 TTCCTATTACACTTGCCTGGAG 57.512 45.455 0.00 0.00 0.00 3.86
45 46 0.546747 CCTCCTGTGGGTAAGGTGGA 60.547 60.000 4.86 0.00 46.95 4.02
52 53 1.073284 GTGGGTAAGGTGGAGCTTTCA 59.927 52.381 0.00 0.00 0.00 2.69
54 55 1.454201 GGTAAGGTGGAGCTTTCAGC 58.546 55.000 10.87 10.87 42.84 4.26
56 57 1.064003 TAAGGTGGAGCTTTCAGCCA 58.936 50.000 13.99 2.16 43.77 4.75
174 191 6.510536 TGTTCAATTGTAATGATGCACAACA 58.489 32.000 5.13 1.39 37.47 3.33
200 217 1.740025 GCAAGGCATGACTCTTGTACC 59.260 52.381 0.00 0.00 41.56 3.34
226 244 0.247460 CACCGAGCTTCTGGTCATCA 59.753 55.000 3.48 0.00 40.44 3.07
276 308 1.613925 TGAGTCTCTTTCGGTCACCAG 59.386 52.381 0.65 0.00 0.00 4.00
345 378 6.459024 CGAGTTTATTCCACAAAACTTCACCA 60.459 38.462 2.34 0.00 43.97 4.17
384 420 3.183373 GCAGATTGCTTAGCGAGATACAC 59.817 47.826 0.00 0.00 40.96 2.90
408 444 4.322725 CCCTACTGAATGTAGCACAACTGA 60.323 45.833 0.00 0.00 45.44 3.41
497 533 7.554959 TTGGAATAGAACTCTTGTTACTCCT 57.445 36.000 0.00 0.00 36.39 3.69
532 568 6.358974 AACAAGTGAGAAATAAATTGGGGG 57.641 37.500 0.00 0.00 0.00 5.40
533 569 5.402630 ACAAGTGAGAAATAAATTGGGGGT 58.597 37.500 0.00 0.00 0.00 4.95
538 574 2.388915 AGAAATAAATTGGGGGTGGGGT 59.611 45.455 0.00 0.00 0.00 4.95
539 575 2.262266 AATAAATTGGGGGTGGGGTG 57.738 50.000 0.00 0.00 0.00 4.61
542 578 1.967343 AAATTGGGGGTGGGGTGTGT 61.967 55.000 0.00 0.00 0.00 3.72
543 579 1.967343 AATTGGGGGTGGGGTGTGTT 61.967 55.000 0.00 0.00 0.00 3.32
546 582 4.531426 GGGGTGGGGTGTGTTGCA 62.531 66.667 0.00 0.00 0.00 4.08
548 584 2.912025 GGTGGGGTGTGTTGCAGG 60.912 66.667 0.00 0.00 0.00 4.85
549 585 2.123897 GTGGGGTGTGTTGCAGGT 60.124 61.111 0.00 0.00 0.00 4.00
552 588 0.616111 TGGGGTGTGTTGCAGGTTTT 60.616 50.000 0.00 0.00 0.00 2.43
553 589 0.104120 GGGGTGTGTTGCAGGTTTTC 59.896 55.000 0.00 0.00 0.00 2.29
580 623 7.965107 CAGTGCATTACTCCTCTTGTATTTTTC 59.035 37.037 0.00 0.00 37.60 2.29
583 626 9.077885 TGCATTACTCCTCTTGTATTTTTCTTT 57.922 29.630 0.00 0.00 0.00 2.52
584 627 9.914131 GCATTACTCCTCTTGTATTTTTCTTTT 57.086 29.630 0.00 0.00 0.00 2.27
682 770 3.283259 AGGTAACCTAAATGCTCCTGC 57.717 47.619 0.00 0.00 33.52 4.85
696 796 2.534298 CTCCTGCAGATCTAACACGTG 58.466 52.381 17.39 15.48 0.00 4.49
797 897 7.450074 TGGCACGAGACCAATATATTATTTCT 58.550 34.615 0.00 0.49 33.12 2.52
807 907 8.429641 ACCAATATATTATTTCTGTCGTGGAGT 58.570 33.333 0.00 0.00 0.00 3.85
835 935 4.026356 GCTCAAAGCCCTGGACATATAT 57.974 45.455 0.00 0.00 34.48 0.86
848 948 3.362706 GACATATATCTGCCCCGGACTA 58.637 50.000 0.73 0.00 0.00 2.59
854 957 2.443390 TGCCCCGGACTAGCTACC 60.443 66.667 0.73 0.00 0.00 3.18
876 979 2.113139 CCCTGCGGAGGTGTTTGT 59.887 61.111 22.54 0.00 37.73 2.83
975 1079 3.332187 AGAAAAGAAAGAAGGGAGAGGGG 59.668 47.826 0.00 0.00 0.00 4.79
1002 1106 2.537560 GCGGCGGTGAATCCAGATG 61.538 63.158 9.78 0.00 35.57 2.90
1003 1107 1.889105 CGGCGGTGAATCCAGATGG 60.889 63.158 0.00 0.00 35.57 3.51
1046 1150 2.125912 CGAGTCTTGTGAGCCGGG 60.126 66.667 2.18 0.00 0.00 5.73
1074 1178 1.051812 CTGTGGCGGGGAAGATATCT 58.948 55.000 0.00 0.00 0.00 1.98
1316 1420 3.361977 GGCGGCGGTGTTGTTGAT 61.362 61.111 9.78 0.00 0.00 2.57
1453 1563 3.388350 GGAGGAACCAAGGAGAACGATAT 59.612 47.826 0.00 0.00 38.79 1.63
1478 1588 5.819991 TCAGGAAGCCAAAACTGATCTAAT 58.180 37.500 0.00 0.00 35.24 1.73
1490 1600 4.455606 ACTGATCTAATTGCCTACCAAGC 58.544 43.478 0.00 0.00 36.76 4.01
1537 1650 1.208052 AGCTCGTGGTGCAGATTATGT 59.792 47.619 0.00 0.00 0.00 2.29
1554 1667 2.492019 TGTCGGATGATGACGATGAC 57.508 50.000 0.00 0.00 41.53 3.06
1602 1715 0.917533 AAGAGGCATGTGATCCAGCT 59.082 50.000 0.00 0.00 0.00 4.24
1623 1736 6.091305 CAGCTTTTATTCTCGAGAATGACACA 59.909 38.462 38.71 22.82 43.90 3.72
1632 1745 2.986479 CGAGAATGACACAATGACGACA 59.014 45.455 0.00 0.00 0.00 4.35
1638 1751 5.885230 ATGACACAATGACGACAATGATT 57.115 34.783 9.88 0.00 32.00 2.57
1639 1752 5.033326 TGACACAATGACGACAATGATTG 57.967 39.130 9.88 3.16 32.00 2.67
1648 1761 1.593006 CGACAATGATTGTAGCGGACC 59.407 52.381 11.28 0.00 45.52 4.46
1685 1798 2.284921 CCTGGCTGAGGAGGTGGA 60.285 66.667 0.00 0.00 46.33 4.02
1745 1858 8.713271 AGTTAATCTGTCGACTGAAGAATTTTC 58.287 33.333 25.99 12.21 0.00 2.29
1782 1895 2.421248 GGAGGAAGCAGGGAGAAAGATG 60.421 54.545 0.00 0.00 0.00 2.90
1793 1906 2.751806 GGAGAAAGATGGCTCACAAAGG 59.248 50.000 0.00 0.00 32.83 3.11
1823 1936 1.106285 CCAAATGCCTACCAAGCCTC 58.894 55.000 0.00 0.00 0.00 4.70
2200 2328 1.837538 CTGTGCCCGTGTTTACCGTG 61.838 60.000 0.00 0.00 0.00 4.94
2256 2384 2.967201 TCCCTTCGACAAGACCAGTAAA 59.033 45.455 0.00 0.00 0.00 2.01
2350 2494 1.016627 GACTGCGCTATTTGCCATGA 58.983 50.000 9.73 0.00 38.78 3.07
2401 2548 1.278127 CCATCACCGTAACTCCTTGGT 59.722 52.381 0.00 0.00 34.29 3.67
2555 2702 0.693049 ATCGCCAAAGGGAGAACTGT 59.307 50.000 0.00 0.00 46.54 3.55
2641 2788 8.924511 TTCATTGGTCTCTTCTTTCAACTAAT 57.075 30.769 0.00 0.00 0.00 1.73
2780 2932 9.562408 TTGTAACTAACTACCAAATTCATGTCA 57.438 29.630 0.00 0.00 0.00 3.58
3075 3280 9.932207 ATCTTAAATTGCTGTGATGATTTGAAA 57.068 25.926 0.00 0.00 0.00 2.69
3230 3435 6.313519 AGTGGTTCATGTATAGGTTGACAT 57.686 37.500 0.00 0.00 36.73 3.06
3233 3438 7.121168 AGTGGTTCATGTATAGGTTGACATTTG 59.879 37.037 0.00 0.00 34.01 2.32
3701 3953 8.871629 TTTTAAAGGTGATAGATTGCCAGTTA 57.128 30.769 0.00 0.00 0.00 2.24
3993 4254 3.580022 TGTTCTCTTCTCTGGCAATCTGA 59.420 43.478 0.00 0.00 0.00 3.27
3994 4255 4.183101 GTTCTCTTCTCTGGCAATCTGAG 58.817 47.826 0.00 0.00 41.19 3.35
4045 4306 7.287005 TGTTATAGTCCAGTGGTACTCTAATGG 59.713 40.741 9.54 0.00 40.70 3.16
4067 4328 2.936498 ACGGTTGTCAAGTTGTCTGAAG 59.064 45.455 2.11 0.00 0.00 3.02
4069 4330 3.374058 CGGTTGTCAAGTTGTCTGAAGTT 59.626 43.478 2.11 0.00 0.00 2.66
4075 4336 9.813080 GTTGTCAAGTTGTCTGAAGTTATATTC 57.187 33.333 2.11 0.00 0.00 1.75
4130 4404 5.128919 AGTATCAATTGCTGCCTCTAAAGG 58.871 41.667 0.00 0.00 46.44 3.11
4141 4415 5.291905 TGCCTCTAAAGGGAAGCTTATAC 57.708 43.478 0.00 0.00 40.57 1.47
4144 4418 5.511716 GCCTCTAAAGGGAAGCTTATACTCC 60.512 48.000 0.00 0.00 43.58 3.85
4145 4419 5.012251 CCTCTAAAGGGAAGCTTATACTCCC 59.988 48.000 11.93 11.93 39.21 4.30
4149 4423 1.619332 GGGAAGCTTATACTCCCTCCG 59.381 57.143 12.49 0.00 37.63 4.63
4150 4424 2.317973 GGAAGCTTATACTCCCTCCGT 58.682 52.381 0.00 0.00 0.00 4.69
4151 4425 2.296752 GGAAGCTTATACTCCCTCCGTC 59.703 54.545 0.00 0.00 0.00 4.79
4152 4426 3.224269 GAAGCTTATACTCCCTCCGTCT 58.776 50.000 0.00 0.00 0.00 4.18
4153 4427 2.588620 AGCTTATACTCCCTCCGTCTG 58.411 52.381 0.00 0.00 0.00 3.51
4154 4428 2.175069 AGCTTATACTCCCTCCGTCTGA 59.825 50.000 0.00 0.00 0.00 3.27
4155 4429 2.957006 GCTTATACTCCCTCCGTCTGAA 59.043 50.000 0.00 0.00 0.00 3.02
4156 4430 3.383825 GCTTATACTCCCTCCGTCTGAAA 59.616 47.826 0.00 0.00 0.00 2.69
4157 4431 4.142004 GCTTATACTCCCTCCGTCTGAAAA 60.142 45.833 0.00 0.00 0.00 2.29
4158 4432 5.453480 GCTTATACTCCCTCCGTCTGAAAAT 60.453 44.000 0.00 0.00 0.00 1.82
4159 4433 6.239232 GCTTATACTCCCTCCGTCTGAAAATA 60.239 42.308 0.00 0.00 0.00 1.40
4160 4434 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
4161 4435 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
4162 4436 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
4163 4437 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4164 4438 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4165 4439 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4166 4440 4.562757 CCCTCCGTCTGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
4167 4441 5.178797 CCTCCGTCTGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
4168 4442 5.292101 CCTCCGTCTGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
4169 4443 5.789521 TCCGTCTGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
4170 4444 6.227522 TCCGTCTGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
4171 4445 6.708502 TCCGTCTGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
4172 4446 7.227711 TCCGTCTGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
4173 4447 8.023128 CCGTCTGAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
4174 4448 8.843733 CGTCTGAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
4175 4449 9.132521 GTCTGAAAATACTTGTCATCAAAATGG 57.867 33.333 0.00 0.00 33.42 3.16
4176 4450 9.076781 TCTGAAAATACTTGTCATCAAAATGGA 57.923 29.630 0.00 0.00 33.42 3.41
4177 4451 9.865321 CTGAAAATACTTGTCATCAAAATGGAT 57.135 29.630 0.00 0.00 33.42 3.41
4185 4459 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
4186 4460 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
4187 4461 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
4188 4462 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
4189 4463 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
4190 4464 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
4193 4467 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
4199 4473 9.225682 TGGATAAAAAGGGATGTATCTAGAACT 57.774 33.333 0.00 0.00 0.00 3.01
4231 4505 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
4237 4511 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
4240 4514 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
4241 4515 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
4242 4516 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
4243 4517 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
4244 4518 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
4245 4519 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
4253 4527 9.865321 ATTCATTTTGATGACAAGTATTTCCAG 57.135 29.630 0.00 0.00 37.32 3.86
4254 4528 8.634335 TCATTTTGATGACAAGTATTTCCAGA 57.366 30.769 0.00 0.00 37.32 3.86
4255 4529 8.514594 TCATTTTGATGACAAGTATTTCCAGAC 58.485 33.333 0.00 0.00 37.32 3.51
4256 4530 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
4257 4531 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
4258 4532 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
4259 4533 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
4260 4534 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
4261 4535 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
4262 4536 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
4263 4537 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
4264 4538 2.108970 GTATTTCCAGACGGAGGGAGT 58.891 52.381 0.00 0.00 44.10 3.85
4265 4539 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
4266 4540 2.544844 TTTCCAGACGGAGGGAGTAT 57.455 50.000 0.00 0.00 44.10 2.12
4267 4541 2.544844 TTCCAGACGGAGGGAGTATT 57.455 50.000 0.00 0.00 44.10 1.89
4268 4542 2.544844 TCCAGACGGAGGGAGTATTT 57.455 50.000 0.00 0.00 35.91 1.40
4287 4561 9.599322 GAGTATTTGTTAATAATCTCATTGCCG 57.401 33.333 0.00 0.00 37.98 5.69
4335 4609 1.141665 TGACGGCACATCATCCTCG 59.858 57.895 0.00 0.00 0.00 4.63
4345 4619 2.571653 ACATCATCCTCGTCCCTTTCAA 59.428 45.455 0.00 0.00 0.00 2.69
4346 4620 3.009033 ACATCATCCTCGTCCCTTTCAAA 59.991 43.478 0.00 0.00 0.00 2.69
4347 4621 4.202441 CATCATCCTCGTCCCTTTCAAAT 58.798 43.478 0.00 0.00 0.00 2.32
4348 4622 4.301072 TCATCCTCGTCCCTTTCAAATT 57.699 40.909 0.00 0.00 0.00 1.82
4349 4623 4.009675 TCATCCTCGTCCCTTTCAAATTG 58.990 43.478 0.00 0.00 0.00 2.32
4350 4624 3.780804 TCCTCGTCCCTTTCAAATTGA 57.219 42.857 0.00 0.00 0.00 2.57
4351 4625 4.301072 TCCTCGTCCCTTTCAAATTGAT 57.699 40.909 0.00 0.00 0.00 2.57
4352 4626 4.009675 TCCTCGTCCCTTTCAAATTGATG 58.990 43.478 0.00 0.00 0.00 3.07
4353 4627 3.428045 CCTCGTCCCTTTCAAATTGATGC 60.428 47.826 0.00 0.00 0.00 3.91
4354 4628 2.161410 TCGTCCCTTTCAAATTGATGCG 59.839 45.455 0.00 0.00 0.00 4.73
4355 4629 2.262211 GTCCCTTTCAAATTGATGCGC 58.738 47.619 0.00 0.00 0.00 6.09
4356 4630 2.094545 GTCCCTTTCAAATTGATGCGCT 60.095 45.455 9.73 0.00 0.00 5.92
4357 4631 2.562298 TCCCTTTCAAATTGATGCGCTT 59.438 40.909 9.73 0.55 0.00 4.68
4358 4632 3.006752 TCCCTTTCAAATTGATGCGCTTT 59.993 39.130 9.73 0.00 0.00 3.51
4359 4633 3.747529 CCCTTTCAAATTGATGCGCTTTT 59.252 39.130 9.73 0.00 0.00 2.27
4383 4657 2.559998 AGCAAAATTTACATCGGGCG 57.440 45.000 0.00 0.00 0.00 6.13
4386 4660 2.159435 GCAAAATTTACATCGGGCGAGT 60.159 45.455 0.00 0.00 0.00 4.18
4425 4699 2.046411 CGTGTGGGCCTGTATGCA 60.046 61.111 4.53 0.00 0.00 3.96
4435 4709 1.550072 GCCTGTATGCATTGTTTGGGT 59.450 47.619 3.54 0.00 0.00 4.51
4454 4729 2.670934 GCCCACTGTGAGCTGGTG 60.671 66.667 9.86 0.00 0.00 4.17
4462 4737 1.148273 GTGAGCTGGTGGTGTTGGA 59.852 57.895 0.00 0.00 0.00 3.53
4571 4879 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
4578 4886 8.241367 GTCCGGAAATACTTGTCATTAAAATGT 58.759 33.333 5.23 0.00 37.65 2.71
4655 4963 5.976534 TCCATTTTGATGACAAGTGTTTTCG 59.023 36.000 0.00 0.00 37.32 3.46
4660 4968 4.384940 TGATGACAAGTGTTTTCGGATGA 58.615 39.130 0.00 0.00 0.00 2.92
4661 4969 4.452114 TGATGACAAGTGTTTTCGGATGAG 59.548 41.667 0.00 0.00 0.00 2.90
4664 4972 2.105821 ACAAGTGTTTTCGGATGAGGGA 59.894 45.455 0.00 0.00 0.00 4.20
4665 4973 2.744202 CAAGTGTTTTCGGATGAGGGAG 59.256 50.000 0.00 0.00 0.00 4.30
4666 4974 1.978580 AGTGTTTTCGGATGAGGGAGT 59.021 47.619 0.00 0.00 0.00 3.85
4667 4975 3.170717 AGTGTTTTCGGATGAGGGAGTA 58.829 45.455 0.00 0.00 0.00 2.59
4668 4976 3.775316 AGTGTTTTCGGATGAGGGAGTAT 59.225 43.478 0.00 0.00 0.00 2.12
4669 4977 4.960469 AGTGTTTTCGGATGAGGGAGTATA 59.040 41.667 0.00 0.00 0.00 1.47
4670 4978 5.424252 AGTGTTTTCGGATGAGGGAGTATAA 59.576 40.000 0.00 0.00 0.00 0.98
4671 4979 6.099845 AGTGTTTTCGGATGAGGGAGTATAAT 59.900 38.462 0.00 0.00 0.00 1.28
4672 4980 6.424207 GTGTTTTCGGATGAGGGAGTATAATC 59.576 42.308 0.00 0.00 0.00 1.75
4673 4981 6.326583 TGTTTTCGGATGAGGGAGTATAATCT 59.673 38.462 0.00 0.00 0.00 2.40
4674 4982 7.507956 TGTTTTCGGATGAGGGAGTATAATCTA 59.492 37.037 0.00 0.00 0.00 1.98
4675 4983 7.704578 TTTCGGATGAGGGAGTATAATCTAG 57.295 40.000 0.00 0.00 0.00 2.43
4676 4984 5.756918 TCGGATGAGGGAGTATAATCTAGG 58.243 45.833 0.00 0.00 0.00 3.02
4677 4985 5.491439 TCGGATGAGGGAGTATAATCTAGGA 59.509 44.000 0.00 0.00 0.00 2.94
4678 4986 5.591067 CGGATGAGGGAGTATAATCTAGGAC 59.409 48.000 0.00 0.00 0.00 3.85
4680 4988 7.129425 GGATGAGGGAGTATAATCTAGGACAT 58.871 42.308 0.00 0.66 0.00 3.06
4681 4989 8.282982 GGATGAGGGAGTATAATCTAGGACATA 58.717 40.741 0.00 0.00 0.00 2.29
4682 4990 9.127277 GATGAGGGAGTATAATCTAGGACATAC 57.873 40.741 0.00 0.00 0.00 2.39
4684 4992 7.889073 TGAGGGAGTATAATCTAGGACATACAC 59.111 40.741 0.00 5.15 0.00 2.90
4685 4993 6.885376 AGGGAGTATAATCTAGGACATACACG 59.115 42.308 0.00 0.00 0.00 4.49
4687 4995 6.179504 AGTATAATCTAGGACATACACGCG 57.820 41.667 3.53 3.53 0.00 6.01
4688 4996 5.704515 AGTATAATCTAGGACATACACGCGT 59.295 40.000 5.58 5.58 0.00 6.01
4690 4998 2.554806 TCTAGGACATACACGCGTTG 57.445 50.000 10.22 8.77 0.00 4.10
4692 5000 0.244178 TAGGACATACACGCGTTGCA 59.756 50.000 10.22 0.00 0.00 4.08
4693 5001 0.601576 AGGACATACACGCGTTGCAA 60.602 50.000 10.22 0.00 0.00 4.08
4694 5002 0.446222 GGACATACACGCGTTGCAAT 59.554 50.000 10.22 0.00 0.00 3.56
4695 5003 1.523501 GACATACACGCGTTGCAATG 58.476 50.000 10.22 14.54 0.00 2.82
4696 5004 0.167908 ACATACACGCGTTGCAATGG 59.832 50.000 19.93 12.23 0.00 3.16
4699 5007 1.295357 TACACGCGTTGCAATGGGAG 61.295 55.000 34.44 29.36 0.00 4.30
4746 5164 3.650942 AGCCGGGTTTAGGATTGATGATA 59.349 43.478 0.00 0.00 0.00 2.15
4751 5169 7.361799 GCCGGGTTTAGGATTGATGATATAAAC 60.362 40.741 2.18 0.00 33.43 2.01
4761 5179 8.824781 GGATTGATGATATAAACGATGGATCAG 58.175 37.037 0.00 0.00 30.49 2.90
4763 5181 8.538409 TTGATGATATAAACGATGGATCAGTG 57.462 34.615 0.00 0.00 30.49 3.66
4764 5182 7.099120 TGATGATATAAACGATGGATCAGTGG 58.901 38.462 0.00 0.00 30.49 4.00
4773 5191 4.053983 CGATGGATCAGTGGACAACATAG 58.946 47.826 0.00 0.00 0.00 2.23
4774 5192 4.202151 CGATGGATCAGTGGACAACATAGA 60.202 45.833 0.00 0.00 0.00 1.98
4775 5193 5.510349 CGATGGATCAGTGGACAACATAGAT 60.510 44.000 0.00 0.00 0.00 1.98
4776 5194 5.698741 TGGATCAGTGGACAACATAGATT 57.301 39.130 0.00 0.00 0.00 2.40
4777 5195 6.065976 TGGATCAGTGGACAACATAGATTT 57.934 37.500 0.00 0.00 0.00 2.17
4778 5196 6.484288 TGGATCAGTGGACAACATAGATTTT 58.516 36.000 0.00 0.00 0.00 1.82
4779 5197 6.947733 TGGATCAGTGGACAACATAGATTTTT 59.052 34.615 0.00 0.00 0.00 1.94
4814 5232 3.259930 TTTTTACCTGCTCGCCGC 58.740 55.556 0.00 0.00 39.77 6.53
4815 5233 2.329614 TTTTTACCTGCTCGCCGCC 61.330 57.895 0.00 0.00 38.05 6.13
4816 5234 2.741486 TTTTTACCTGCTCGCCGCCT 62.741 55.000 0.00 0.00 38.05 5.52
4817 5235 2.741486 TTTTACCTGCTCGCCGCCTT 62.741 55.000 0.00 0.00 38.05 4.35
4818 5236 2.741486 TTTACCTGCTCGCCGCCTTT 62.741 55.000 0.00 0.00 38.05 3.11
4819 5237 3.659089 TACCTGCTCGCCGCCTTTC 62.659 63.158 0.00 0.00 38.05 2.62
4821 5239 2.821366 CTGCTCGCCGCCTTTCAT 60.821 61.111 0.00 0.00 38.05 2.57
4822 5240 2.817423 CTGCTCGCCGCCTTTCATC 61.817 63.158 0.00 0.00 38.05 2.92
4823 5241 2.512515 GCTCGCCGCCTTTCATCT 60.513 61.111 0.00 0.00 0.00 2.90
4824 5242 2.817423 GCTCGCCGCCTTTCATCTG 61.817 63.158 0.00 0.00 0.00 2.90
4825 5243 1.448540 CTCGCCGCCTTTCATCTGT 60.449 57.895 0.00 0.00 0.00 3.41
4826 5244 1.699656 CTCGCCGCCTTTCATCTGTG 61.700 60.000 0.00 0.00 0.00 3.66
4827 5245 2.486966 GCCGCCTTTCATCTGTGC 59.513 61.111 0.00 0.00 0.00 4.57
4828 5246 2.787249 CCGCCTTTCATCTGTGCG 59.213 61.111 0.00 0.00 44.47 5.34
4829 5247 2.787249 CGCCTTTCATCTGTGCGG 59.213 61.111 0.00 0.00 41.42 5.69
4830 5248 2.753966 CGCCTTTCATCTGTGCGGG 61.754 63.158 0.00 0.00 41.42 6.13
4831 5249 1.377202 GCCTTTCATCTGTGCGGGA 60.377 57.895 0.00 0.00 0.00 5.14
4832 5250 1.372087 GCCTTTCATCTGTGCGGGAG 61.372 60.000 0.00 0.00 0.00 4.30
4833 5251 0.745845 CCTTTCATCTGTGCGGGAGG 60.746 60.000 0.00 0.00 0.00 4.30
4834 5252 0.250234 CTTTCATCTGTGCGGGAGGA 59.750 55.000 0.00 0.00 0.00 3.71
4854 5272 2.875485 CATCCTGTGCAGTGCAGC 59.125 61.111 20.42 13.96 40.08 5.25
4855 5273 2.745100 ATCCTGTGCAGTGCAGCG 60.745 61.111 20.42 12.28 40.08 5.18
4856 5274 3.244281 ATCCTGTGCAGTGCAGCGA 62.244 57.895 20.42 14.30 40.08 4.93
4857 5275 3.420606 CCTGTGCAGTGCAGCGAG 61.421 66.667 20.42 14.32 40.08 5.03
4858 5276 4.086178 CTGTGCAGTGCAGCGAGC 62.086 66.667 20.42 6.91 40.08 5.03
4861 5279 4.710167 TGCAGTGCAGCGAGCCAT 62.710 61.111 15.37 0.00 44.83 4.40
4862 5280 3.873883 GCAGTGCAGCGAGCCATC 61.874 66.667 11.09 0.00 44.83 3.51
4863 5281 2.125229 CAGTGCAGCGAGCCATCT 60.125 61.111 0.00 0.00 44.83 2.90
4864 5282 2.125229 AGTGCAGCGAGCCATCTG 60.125 61.111 0.00 0.00 44.83 2.90
4865 5283 2.125391 GTGCAGCGAGCCATCTGA 60.125 61.111 0.00 0.00 44.83 3.27
4866 5284 1.523258 GTGCAGCGAGCCATCTGAT 60.523 57.895 0.00 0.00 44.83 2.90
4867 5285 1.523032 TGCAGCGAGCCATCTGATG 60.523 57.895 10.71 10.71 44.83 3.07
4868 5286 2.894565 GCAGCGAGCCATCTGATGC 61.895 63.158 12.17 7.87 35.45 3.91
4869 5287 1.523032 CAGCGAGCCATCTGATGCA 60.523 57.895 12.17 0.00 32.26 3.96
4870 5288 1.093496 CAGCGAGCCATCTGATGCAA 61.093 55.000 12.17 0.00 32.26 4.08
4871 5289 0.814410 AGCGAGCCATCTGATGCAAG 60.814 55.000 12.17 4.56 0.00 4.01
4872 5290 1.094073 GCGAGCCATCTGATGCAAGT 61.094 55.000 12.17 0.00 0.00 3.16
4873 5291 0.656259 CGAGCCATCTGATGCAAGTG 59.344 55.000 12.17 0.00 0.00 3.16
4874 5292 0.381089 GAGCCATCTGATGCAAGTGC 59.619 55.000 12.17 9.53 42.50 4.40
4894 5312 1.003116 CACTAATGCAATCTGAGCCGC 60.003 52.381 0.00 0.00 0.00 6.53
4895 5313 0.590195 CTAATGCAATCTGAGCCGCC 59.410 55.000 0.00 0.00 0.00 6.13
4896 5314 1.159713 TAATGCAATCTGAGCCGCCG 61.160 55.000 0.00 0.00 0.00 6.46
4898 5316 4.838152 GCAATCTGAGCCGCCGGA 62.838 66.667 7.68 0.00 0.00 5.14
4899 5317 2.109799 CAATCTGAGCCGCCGGAT 59.890 61.111 7.68 0.00 33.80 4.18
4900 5318 2.109799 AATCTGAGCCGCCGGATG 59.890 61.111 7.68 0.00 32.79 3.51
4901 5319 4.615815 ATCTGAGCCGCCGGATGC 62.616 66.667 7.68 6.58 31.34 3.91
4906 5324 4.802051 AGCCGCCGGATGCACAAT 62.802 61.111 7.68 0.00 41.33 2.71
4907 5325 2.899838 GCCGCCGGATGCACAATA 60.900 61.111 7.68 0.00 41.33 1.90
4908 5326 3.022287 CCGCCGGATGCACAATAC 58.978 61.111 5.05 0.00 41.33 1.89
4909 5327 1.817520 CCGCCGGATGCACAATACA 60.818 57.895 5.05 0.00 41.33 2.29
4910 5328 1.643292 CGCCGGATGCACAATACAG 59.357 57.895 5.05 0.00 41.33 2.74
4911 5329 1.775039 CGCCGGATGCACAATACAGG 61.775 60.000 5.05 0.00 41.33 4.00
4912 5330 1.447317 GCCGGATGCACAATACAGGG 61.447 60.000 5.05 0.00 40.77 4.45
4913 5331 0.180171 CCGGATGCACAATACAGGGA 59.820 55.000 0.00 0.00 0.00 4.20
4914 5332 1.299541 CGGATGCACAATACAGGGAC 58.700 55.000 0.00 0.00 0.00 4.46
4915 5333 1.680338 GGATGCACAATACAGGGACC 58.320 55.000 0.00 0.00 0.00 4.46
4916 5334 1.064758 GGATGCACAATACAGGGACCA 60.065 52.381 0.00 0.00 0.00 4.02
4917 5335 2.292267 GATGCACAATACAGGGACCAG 58.708 52.381 0.00 0.00 0.00 4.00
4918 5336 1.357137 TGCACAATACAGGGACCAGA 58.643 50.000 0.00 0.00 0.00 3.86
4919 5337 1.702401 TGCACAATACAGGGACCAGAA 59.298 47.619 0.00 0.00 0.00 3.02
4920 5338 2.308570 TGCACAATACAGGGACCAGAAT 59.691 45.455 0.00 0.00 0.00 2.40
4921 5339 2.945668 GCACAATACAGGGACCAGAATC 59.054 50.000 0.00 0.00 0.00 2.52
4922 5340 3.370953 GCACAATACAGGGACCAGAATCT 60.371 47.826 0.00 0.00 0.00 2.40
4923 5341 4.194640 CACAATACAGGGACCAGAATCTG 58.805 47.826 2.68 2.68 0.00 2.90
4924 5342 3.846588 ACAATACAGGGACCAGAATCTGT 59.153 43.478 9.63 5.76 42.32 3.41
4925 5343 5.030147 ACAATACAGGGACCAGAATCTGTA 58.970 41.667 9.63 9.22 43.83 2.74
4926 5344 5.487488 ACAATACAGGGACCAGAATCTGTAA 59.513 40.000 9.63 0.00 43.22 2.41
4927 5345 6.012858 ACAATACAGGGACCAGAATCTGTAAA 60.013 38.462 9.63 0.00 43.22 2.01
4928 5346 4.287766 ACAGGGACCAGAATCTGTAAAC 57.712 45.455 9.63 0.00 38.52 2.01
4929 5347 3.650942 ACAGGGACCAGAATCTGTAAACA 59.349 43.478 9.63 0.00 38.52 2.83
4930 5348 4.256920 CAGGGACCAGAATCTGTAAACAG 58.743 47.826 9.63 3.64 45.08 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.181350 CTTACCCACAGGAGGATGCC 59.819 60.000 0.00 0.00 36.73 4.40
24 25 1.584724 CACCTTACCCACAGGAGGAT 58.415 55.000 0.00 0.00 35.14 3.24
54 55 2.437200 TTCAGAAAAAGCGCCATTGG 57.563 45.000 2.29 0.00 0.00 3.16
56 57 2.415893 CCGATTCAGAAAAAGCGCCATT 60.416 45.455 2.29 0.00 36.76 3.16
95 96 0.035152 TTGTGCCGCAAGATCATCCT 60.035 50.000 0.00 0.00 43.02 3.24
128 129 2.589798 TACCTGTACGCAGCCAATAC 57.410 50.000 0.00 0.00 41.26 1.89
190 207 2.740580 CGGTGTGTTGTGGTACAAGAGT 60.741 50.000 0.00 0.00 44.16 3.24
200 217 0.583438 CAGAAGCTCGGTGTGTTGTG 59.417 55.000 0.00 0.00 0.00 3.33
226 244 6.548993 TGAAGATAGATAGTGTCTGACTGCAT 59.451 38.462 9.51 0.00 37.83 3.96
288 320 1.133575 CAGGGCAATGATCTCCATGGT 60.134 52.381 12.58 0.00 35.24 3.55
345 378 6.294473 CAATCTGCAACTCTATTCTGGGTAT 58.706 40.000 0.00 0.00 0.00 2.73
408 444 0.905337 GGGCCCTCTGTGTAGTCAGT 60.905 60.000 17.04 0.00 36.85 3.41
481 517 5.527582 TCTTTTGCAGGAGTAACAAGAGTTC 59.472 40.000 0.00 0.00 39.15 3.01
532 568 1.326951 AAACCTGCAACACACCCCAC 61.327 55.000 0.00 0.00 0.00 4.61
533 569 0.616111 AAAACCTGCAACACACCCCA 60.616 50.000 0.00 0.00 0.00 4.96
538 574 1.476085 CACTGGAAAACCTGCAACACA 59.524 47.619 0.00 0.00 0.00 3.72
539 575 1.802508 GCACTGGAAAACCTGCAACAC 60.803 52.381 0.00 0.00 0.00 3.32
542 578 1.412079 ATGCACTGGAAAACCTGCAA 58.588 45.000 7.13 0.00 42.66 4.08
543 579 1.412079 AATGCACTGGAAAACCTGCA 58.588 45.000 0.00 0.00 43.50 4.41
545 581 3.191371 GGAGTAATGCACTGGAAAACCTG 59.809 47.826 0.00 0.00 37.72 4.00
546 582 3.074538 AGGAGTAATGCACTGGAAAACCT 59.925 43.478 0.00 0.00 37.72 3.50
548 584 4.327680 AGAGGAGTAATGCACTGGAAAAC 58.672 43.478 0.00 0.00 37.72 2.43
549 585 4.640771 AGAGGAGTAATGCACTGGAAAA 57.359 40.909 0.00 0.00 37.72 2.29
552 588 2.906389 ACAAGAGGAGTAATGCACTGGA 59.094 45.455 0.00 0.00 37.72 3.86
553 589 3.340814 ACAAGAGGAGTAATGCACTGG 57.659 47.619 0.00 0.00 37.72 4.00
675 763 1.134965 ACGTGTTAGATCTGCAGGAGC 60.135 52.381 15.13 3.50 42.57 4.70
676 764 2.534298 CACGTGTTAGATCTGCAGGAG 58.466 52.381 15.13 13.27 0.00 3.69
678 766 1.645034 CCACGTGTTAGATCTGCAGG 58.355 55.000 15.13 12.03 0.00 4.85
679 767 1.002366 GCCACGTGTTAGATCTGCAG 58.998 55.000 15.65 7.63 0.00 4.41
680 768 0.608130 AGCCACGTGTTAGATCTGCA 59.392 50.000 15.65 1.33 0.00 4.41
682 770 3.804325 CCATTAGCCACGTGTTAGATCTG 59.196 47.826 15.65 3.12 0.00 2.90
797 897 0.830444 AGCCCAGTTACTCCACGACA 60.830 55.000 0.00 0.00 0.00 4.35
835 935 1.455217 GTAGCTAGTCCGGGGCAGA 60.455 63.158 0.00 0.00 0.00 4.26
876 979 3.441572 CCTAGACGACCGACTAAAAGGAA 59.558 47.826 0.00 0.00 0.00 3.36
941 1044 4.997395 TCTTTCTTTTCTGGACTGGATTCG 59.003 41.667 0.00 0.00 0.00 3.34
1002 1106 2.739913 CGACGACTCCATCTCTATCTCC 59.260 54.545 0.00 0.00 0.00 3.71
1003 1107 3.655486 TCGACGACTCCATCTCTATCTC 58.345 50.000 0.00 0.00 0.00 2.75
1004 1108 3.070446 ACTCGACGACTCCATCTCTATCT 59.930 47.826 0.00 0.00 0.00 1.98
1005 1109 3.185594 CACTCGACGACTCCATCTCTATC 59.814 52.174 0.00 0.00 0.00 2.08
1006 1110 3.135225 CACTCGACGACTCCATCTCTAT 58.865 50.000 0.00 0.00 0.00 1.98
1007 1111 2.093606 ACACTCGACGACTCCATCTCTA 60.094 50.000 0.00 0.00 0.00 2.43
1008 1112 1.339247 ACACTCGACGACTCCATCTCT 60.339 52.381 0.00 0.00 0.00 3.10
1046 1150 1.452108 CCCGCCACAGATCTTTCCC 60.452 63.158 0.00 0.00 0.00 3.97
1190 1294 0.902531 TGTCTTCTTCCCCATCGTCC 59.097 55.000 0.00 0.00 0.00 4.79
1316 1420 3.663176 GCAAGCTCGCAACCTGCA 61.663 61.111 0.00 0.00 45.36 4.41
1438 1548 3.891977 TCCTGAGATATCGTTCTCCTTGG 59.108 47.826 0.00 8.89 41.24 3.61
1453 1563 3.328931 AGATCAGTTTTGGCTTCCTGAGA 59.671 43.478 0.00 0.00 37.37 3.27
1537 1650 3.821033 ACATAGTCATCGTCATCATCCGA 59.179 43.478 0.00 0.00 37.51 4.55
1554 1667 4.436584 GCTGCTGCTTCACACTTAACATAG 60.437 45.833 8.53 0.00 36.03 2.23
1592 1705 5.352284 TCTCGAGAATAAAAGCTGGATCAC 58.648 41.667 14.01 0.00 0.00 3.06
1602 1715 8.443160 GTCATTGTGTCATTCTCGAGAATAAAA 58.557 33.333 34.03 22.58 42.41 1.52
1623 1736 3.309682 CCGCTACAATCATTGTCGTCATT 59.690 43.478 6.21 0.00 44.12 2.57
1632 1745 0.179056 CGGGGTCCGCTACAATCATT 60.179 55.000 4.18 0.00 41.17 2.57
1685 1798 0.037590 TCCACTTTTAGCCGCCACAT 59.962 50.000 0.00 0.00 0.00 3.21
1745 1858 3.905678 CCTCCTCCAGTAGCGCCG 61.906 72.222 2.29 0.00 0.00 6.46
1782 1895 1.900498 AGTGCTGCCTTTGTGAGCC 60.900 57.895 0.00 0.00 31.31 4.70
1793 1906 0.179119 GGCATTTGGATCAGTGCTGC 60.179 55.000 0.00 0.00 37.70 5.25
1823 1936 3.315470 CCAATCATCATCCACTTGAGCAG 59.685 47.826 0.00 0.00 0.00 4.24
1832 1945 5.608015 TCCTTATCAGACCAATCATCATCCA 59.392 40.000 0.00 0.00 0.00 3.41
2200 2328 2.751806 CAAAGAGCCAGTCCCAATCTTC 59.248 50.000 0.00 0.00 30.16 2.87
2256 2384 1.383803 GGCTGGAGGAGGAGGACAT 60.384 63.158 0.00 0.00 0.00 3.06
2350 2494 1.392710 CGAGGGTGGGATAGACGCTT 61.393 60.000 0.00 0.00 36.79 4.68
2401 2548 1.123861 AAGAGTCTGCTGTGGCCTGA 61.124 55.000 3.32 0.00 37.74 3.86
2414 2561 7.818930 ACTTTGATTGAGAAGATCTGAAGAGTC 59.181 37.037 0.00 0.00 0.00 3.36
2555 2702 2.656947 CCTTCTTGGTGAGGGTTTGA 57.343 50.000 0.00 0.00 37.18 2.69
2780 2932 3.712016 TGTACTGTACATGCCCACATT 57.288 42.857 16.26 0.00 32.87 2.71
2980 3156 4.935205 ACGTTGAGTAGCATAATGAAAGCA 59.065 37.500 0.00 0.00 0.00 3.91
3075 3280 2.887151 ATGTAAGGTGAGCAAGCCTT 57.113 45.000 9.94 9.94 45.95 4.35
3141 3346 0.451783 CAGGCAAATACCGCAGAACC 59.548 55.000 0.00 0.00 33.69 3.62
3230 3435 5.174395 CCACACCATTTTGACAAAGACAAA 58.826 37.500 0.10 0.00 35.81 2.83
3233 3438 4.385358 ACCACACCATTTTGACAAAGAC 57.615 40.909 0.10 0.00 0.00 3.01
3336 3588 4.382470 GCATAAGAGACCGATCCTGCATAT 60.382 45.833 0.00 0.00 0.00 1.78
3522 3774 5.586243 ACATATGTCAACTCCAATGTGCTAC 59.414 40.000 1.41 0.00 0.00 3.58
3701 3953 7.508977 TGAAAACTCAATCCTTCCTTTACCATT 59.491 33.333 0.00 0.00 0.00 3.16
3993 4254 2.364972 AACAGCAAAGCCAGTTACCT 57.635 45.000 0.00 0.00 0.00 3.08
3994 4255 3.506067 ACATAACAGCAAAGCCAGTTACC 59.494 43.478 6.74 0.00 34.28 2.85
4045 4306 2.546778 TCAGACAACTTGACAACCGTC 58.453 47.619 0.00 0.00 42.93 4.79
4130 4404 2.296752 GACGGAGGGAGTATAAGCTTCC 59.703 54.545 0.00 0.00 34.25 3.46
4141 4415 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4144 4418 4.566004 TGACAAGTATTTTCAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
4145 4419 5.869344 TGATGACAAGTATTTTCAGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
4146 4420 5.789521 TGATGACAAGTATTTTCAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
4147 4421 6.480524 TTGATGACAAGTATTTTCAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
4148 4422 8.843733 CATTTTGATGACAAGTATTTTCAGACG 58.156 33.333 0.00 0.00 37.32 4.18
4149 4423 9.132521 CCATTTTGATGACAAGTATTTTCAGAC 57.867 33.333 0.00 0.00 37.32 3.51
4150 4424 9.076781 TCCATTTTGATGACAAGTATTTTCAGA 57.923 29.630 0.00 0.00 37.32 3.27
4151 4425 9.865321 ATCCATTTTGATGACAAGTATTTTCAG 57.135 29.630 0.00 0.00 37.32 3.02
4159 4433 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
4160 4434 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
4161 4435 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
4162 4436 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
4163 4437 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
4164 4438 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
4167 4441 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
4173 4447 9.225682 AGTTCTAGATACATCCCTTTTTATCCA 57.774 33.333 0.00 0.00 0.00 3.41
4205 4479 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
4211 4485 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
4214 4488 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
4215 4489 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
4216 4490 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
4217 4491 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
4218 4492 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
4219 4493 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
4227 4501 9.865321 CTGGAAATACTTGTCATCAAAATGAAT 57.135 29.630 0.00 0.00 43.42 2.57
4228 4502 9.076781 TCTGGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
4229 4503 8.514594 GTCTGGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
4230 4504 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
4231 4505 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
4232 4506 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
4233 4507 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
4234 4508 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
4235 4509 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
4236 4510 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
4237 4511 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
4238 4512 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
4239 4513 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
4240 4514 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
4241 4515 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
4242 4516 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
4243 4517 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
4244 4518 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
4245 4519 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
4246 4520 2.544844 TACTCCCTCCGTCTGGAAAT 57.455 50.000 0.00 0.00 45.87 2.17
4247 4521 2.544844 ATACTCCCTCCGTCTGGAAA 57.455 50.000 0.00 0.00 45.87 3.13
4248 4522 2.500098 CAAATACTCCCTCCGTCTGGAA 59.500 50.000 0.00 0.00 45.87 3.53
4249 4523 2.108168 CAAATACTCCCTCCGTCTGGA 58.892 52.381 0.00 0.00 43.88 3.86
4250 4524 1.831736 ACAAATACTCCCTCCGTCTGG 59.168 52.381 0.00 0.00 0.00 3.86
4251 4525 3.611766 AACAAATACTCCCTCCGTCTG 57.388 47.619 0.00 0.00 0.00 3.51
4252 4526 5.952347 ATTAACAAATACTCCCTCCGTCT 57.048 39.130 0.00 0.00 0.00 4.18
4253 4527 8.148999 AGATTATTAACAAATACTCCCTCCGTC 58.851 37.037 0.00 0.00 0.00 4.79
4254 4528 8.030913 AGATTATTAACAAATACTCCCTCCGT 57.969 34.615 0.00 0.00 0.00 4.69
4255 4529 8.148351 TGAGATTATTAACAAATACTCCCTCCG 58.852 37.037 0.00 0.00 0.00 4.63
4259 4533 9.899226 GCAATGAGATTATTAACAAATACTCCC 57.101 33.333 0.00 0.00 0.00 4.30
4260 4534 9.899226 GGCAATGAGATTATTAACAAATACTCC 57.101 33.333 0.00 0.00 0.00 3.85
4261 4535 9.599322 CGGCAATGAGATTATTAACAAATACTC 57.401 33.333 0.00 0.00 0.00 2.59
4262 4536 9.120538 ACGGCAATGAGATTATTAACAAATACT 57.879 29.630 0.00 0.00 0.00 2.12
4265 4539 8.567948 CCTACGGCAATGAGATTATTAACAAAT 58.432 33.333 0.00 0.00 0.00 2.32
4266 4540 7.554835 ACCTACGGCAATGAGATTATTAACAAA 59.445 33.333 0.00 0.00 0.00 2.83
4267 4541 7.011950 CACCTACGGCAATGAGATTATTAACAA 59.988 37.037 0.00 0.00 0.00 2.83
4268 4542 6.481976 CACCTACGGCAATGAGATTATTAACA 59.518 38.462 0.00 0.00 0.00 2.41
4287 4561 8.276252 TCAAAATAACATTCTAAGGCACCTAC 57.724 34.615 0.00 0.00 0.00 3.18
4327 4601 4.009675 CAATTTGAAAGGGACGAGGATGA 58.990 43.478 0.00 0.00 0.00 2.92
4335 4609 2.094545 AGCGCATCAATTTGAAAGGGAC 60.095 45.455 11.47 11.37 0.00 4.46
4357 4631 7.569591 CGCCCGATGTAAATTTTGCTTTAAAAA 60.570 33.333 0.00 0.00 41.29 1.94
4358 4632 6.128795 CGCCCGATGTAAATTTTGCTTTAAAA 60.129 34.615 0.00 0.00 42.10 1.52
4359 4633 5.346281 CGCCCGATGTAAATTTTGCTTTAAA 59.654 36.000 0.00 0.00 0.00 1.52
4362 4636 3.057174 TCGCCCGATGTAAATTTTGCTTT 60.057 39.130 0.00 0.00 0.00 3.51
4383 4657 1.157585 GAAACAAGAGGGCCGAACTC 58.842 55.000 0.00 0.00 35.20 3.01
4386 4660 1.056660 AGAGAAACAAGAGGGCCGAA 58.943 50.000 0.00 0.00 0.00 4.30
4394 4668 1.581934 CACACGCCAGAGAAACAAGA 58.418 50.000 0.00 0.00 0.00 3.02
4397 4671 1.227823 CCCACACGCCAGAGAAACA 60.228 57.895 0.00 0.00 0.00 2.83
4454 4729 4.793201 AGAAGGCCTAATAATCCAACACC 58.207 43.478 5.16 0.00 0.00 4.16
4462 4737 5.728741 CCCCTATCTGAGAAGGCCTAATAAT 59.271 44.000 5.16 0.00 0.00 1.28
4532 4840 5.503927 GGACGGAGGGAGTATATACATACA 58.496 45.833 15.18 0.00 39.69 2.29
4536 4844 2.290514 CCGGACGGAGGGAGTATATACA 60.291 54.545 15.18 0.00 37.50 2.29
4537 4845 2.026822 TCCGGACGGAGGGAGTATATAC 60.027 54.545 9.76 4.60 39.76 1.47
4583 4891 9.458727 CTAAAATACGTCTAGATACATCCCCTA 57.541 37.037 0.00 0.00 0.00 3.53
4624 4932 9.829507 ACACTTGTCATCAAAATGGATTAAAAA 57.170 25.926 0.00 0.00 33.42 1.94
4628 4936 9.474920 GAAAACACTTGTCATCAAAATGGATTA 57.525 29.630 0.00 0.00 33.42 1.75
4629 4937 7.169645 CGAAAACACTTGTCATCAAAATGGATT 59.830 33.333 0.00 0.00 33.42 3.01
4649 4957 6.760291 AGATTATACTCCCTCATCCGAAAAC 58.240 40.000 0.00 0.00 0.00 2.43
4655 4963 6.494952 TGTCCTAGATTATACTCCCTCATCC 58.505 44.000 0.00 0.00 0.00 3.51
4660 4968 6.885376 CGTGTATGTCCTAGATTATACTCCCT 59.115 42.308 0.00 0.00 0.00 4.20
4661 4969 6.404513 GCGTGTATGTCCTAGATTATACTCCC 60.405 46.154 0.00 0.00 0.00 4.30
4664 4972 5.704515 ACGCGTGTATGTCCTAGATTATACT 59.295 40.000 12.93 0.00 0.00 2.12
4665 4973 5.936054 ACGCGTGTATGTCCTAGATTATAC 58.064 41.667 12.93 0.00 0.00 1.47
4666 4974 6.376177 CAACGCGTGTATGTCCTAGATTATA 58.624 40.000 14.98 0.00 0.00 0.98
4667 4975 5.220381 CAACGCGTGTATGTCCTAGATTAT 58.780 41.667 14.98 0.00 0.00 1.28
4668 4976 4.603985 CAACGCGTGTATGTCCTAGATTA 58.396 43.478 14.98 0.00 0.00 1.75
4669 4977 3.444916 CAACGCGTGTATGTCCTAGATT 58.555 45.455 14.98 0.00 0.00 2.40
4670 4978 2.798499 GCAACGCGTGTATGTCCTAGAT 60.798 50.000 14.98 0.00 0.00 1.98
4671 4979 1.468565 GCAACGCGTGTATGTCCTAGA 60.469 52.381 14.98 0.00 0.00 2.43
4672 4980 0.921347 GCAACGCGTGTATGTCCTAG 59.079 55.000 14.98 0.00 0.00 3.02
4673 4981 0.244178 TGCAACGCGTGTATGTCCTA 59.756 50.000 14.98 0.00 0.00 2.94
4674 4982 0.601576 TTGCAACGCGTGTATGTCCT 60.602 50.000 14.98 0.00 0.00 3.85
4675 4983 0.446222 ATTGCAACGCGTGTATGTCC 59.554 50.000 14.98 0.00 0.00 4.02
4676 4984 1.523501 CATTGCAACGCGTGTATGTC 58.476 50.000 14.98 4.74 0.00 3.06
4677 4985 0.167908 CCATTGCAACGCGTGTATGT 59.832 50.000 14.98 0.00 0.00 2.29
4678 4986 0.523125 CCCATTGCAACGCGTGTATG 60.523 55.000 14.98 9.15 0.00 2.39
4680 4988 1.295357 CTCCCATTGCAACGCGTGTA 61.295 55.000 14.98 3.64 0.00 2.90
4681 4989 2.593148 TCCCATTGCAACGCGTGT 60.593 55.556 14.98 0.00 0.00 4.49
4682 4990 1.851021 TTCTCCCATTGCAACGCGTG 61.851 55.000 14.98 8.57 0.00 5.34
4684 4992 0.039617 TTTTCTCCCATTGCAACGCG 60.040 50.000 3.53 3.53 0.00 6.01
4685 4993 2.147436 TTTTTCTCCCATTGCAACGC 57.853 45.000 0.00 0.00 0.00 4.84
4746 5164 4.753516 TGTCCACTGATCCATCGTTTAT 57.246 40.909 0.00 0.00 0.00 1.40
4751 5169 2.385013 TGTTGTCCACTGATCCATCG 57.615 50.000 0.00 0.00 0.00 3.84
4807 5225 1.448540 ACAGATGAAAGGCGGCGAG 60.449 57.895 12.98 0.00 0.00 5.03
4808 5226 1.741401 CACAGATGAAAGGCGGCGA 60.741 57.895 12.98 0.00 0.00 5.54
4809 5227 2.787249 CACAGATGAAAGGCGGCG 59.213 61.111 0.51 0.51 0.00 6.46
4810 5228 2.486966 GCACAGATGAAAGGCGGC 59.513 61.111 0.00 0.00 0.00 6.53
4811 5229 2.787249 CGCACAGATGAAAGGCGG 59.213 61.111 0.00 0.00 43.63 6.13
4812 5230 2.753966 CCCGCACAGATGAAAGGCG 61.754 63.158 0.00 0.00 46.61 5.52
4813 5231 1.372087 CTCCCGCACAGATGAAAGGC 61.372 60.000 0.00 0.00 0.00 4.35
4814 5232 0.745845 CCTCCCGCACAGATGAAAGG 60.746 60.000 0.00 0.00 0.00 3.11
4815 5233 0.250234 TCCTCCCGCACAGATGAAAG 59.750 55.000 0.00 0.00 0.00 2.62
4816 5234 0.036388 GTCCTCCCGCACAGATGAAA 60.036 55.000 0.00 0.00 0.00 2.69
4817 5235 1.596934 GTCCTCCCGCACAGATGAA 59.403 57.895 0.00 0.00 0.00 2.57
4818 5236 2.710902 CGTCCTCCCGCACAGATGA 61.711 63.158 0.00 0.00 0.00 2.92
4819 5237 2.202797 CGTCCTCCCGCACAGATG 60.203 66.667 0.00 0.00 0.00 2.90
4837 5255 2.875485 GCTGCACTGCACAGGATG 59.125 61.111 0.00 0.00 46.00 3.51
4838 5256 2.745100 CGCTGCACTGCACAGGAT 60.745 61.111 0.00 0.00 35.62 3.24
4839 5257 3.871248 CTCGCTGCACTGCACAGGA 62.871 63.158 0.00 0.00 35.62 3.86
4840 5258 3.420606 CTCGCTGCACTGCACAGG 61.421 66.667 0.00 0.00 35.62 4.00
4841 5259 4.086178 GCTCGCTGCACTGCACAG 62.086 66.667 0.00 0.00 42.31 3.66
4844 5262 4.710167 ATGGCTCGCTGCACTGCA 62.710 61.111 3.11 3.11 45.15 4.41
4845 5263 3.873883 GATGGCTCGCTGCACTGC 61.874 66.667 0.00 0.00 45.15 4.40
4846 5264 2.125229 AGATGGCTCGCTGCACTG 60.125 61.111 0.00 0.00 45.15 3.66
4847 5265 1.969200 ATCAGATGGCTCGCTGCACT 61.969 55.000 0.00 0.00 45.15 4.40
4848 5266 1.523258 ATCAGATGGCTCGCTGCAC 60.523 57.895 0.00 0.00 45.15 4.57
4849 5267 1.523032 CATCAGATGGCTCGCTGCA 60.523 57.895 1.95 0.00 45.15 4.41
4850 5268 2.894565 GCATCAGATGGCTCGCTGC 61.895 63.158 12.54 0.00 41.94 5.25
4851 5269 1.093496 TTGCATCAGATGGCTCGCTG 61.093 55.000 12.54 0.00 0.00 5.18
4852 5270 0.814410 CTTGCATCAGATGGCTCGCT 60.814 55.000 12.54 0.00 0.00 4.93
4853 5271 1.094073 ACTTGCATCAGATGGCTCGC 61.094 55.000 12.54 0.00 0.00 5.03
4854 5272 0.656259 CACTTGCATCAGATGGCTCG 59.344 55.000 12.54 3.41 0.00 5.03
4855 5273 0.381089 GCACTTGCATCAGATGGCTC 59.619 55.000 12.54 0.00 41.59 4.70
4856 5274 2.490165 GCACTTGCATCAGATGGCT 58.510 52.632 12.54 0.00 41.59 4.75
4874 5292 1.003116 GCGGCTCAGATTGCATTAGTG 60.003 52.381 0.00 0.00 0.00 2.74
4875 5293 1.303309 GCGGCTCAGATTGCATTAGT 58.697 50.000 0.00 0.00 0.00 2.24
4876 5294 0.590195 GGCGGCTCAGATTGCATTAG 59.410 55.000 0.00 0.00 0.00 1.73
4877 5295 1.159713 CGGCGGCTCAGATTGCATTA 61.160 55.000 7.61 0.00 0.00 1.90
4878 5296 2.475466 CGGCGGCTCAGATTGCATT 61.475 57.895 7.61 0.00 0.00 3.56
4879 5297 2.898840 CGGCGGCTCAGATTGCAT 60.899 61.111 7.61 0.00 0.00 3.96
4881 5299 4.838152 TCCGGCGGCTCAGATTGC 62.838 66.667 23.83 0.00 0.00 3.56
4882 5300 2.109799 ATCCGGCGGCTCAGATTG 59.890 61.111 23.83 0.00 0.00 2.67
4883 5301 2.109799 CATCCGGCGGCTCAGATT 59.890 61.111 23.83 0.00 0.00 2.40
4884 5302 4.615815 GCATCCGGCGGCTCAGAT 62.616 66.667 23.83 6.08 0.00 2.90
4893 5311 1.447317 CCCTGTATTGTGCATCCGGC 61.447 60.000 0.00 0.00 45.13 6.13
4894 5312 0.180171 TCCCTGTATTGTGCATCCGG 59.820 55.000 0.00 0.00 0.00 5.14
4895 5313 1.299541 GTCCCTGTATTGTGCATCCG 58.700 55.000 0.00 0.00 0.00 4.18
4896 5314 1.064758 TGGTCCCTGTATTGTGCATCC 60.065 52.381 0.00 0.00 0.00 3.51
4897 5315 2.092968 TCTGGTCCCTGTATTGTGCATC 60.093 50.000 0.00 0.00 0.00 3.91
4898 5316 1.915489 TCTGGTCCCTGTATTGTGCAT 59.085 47.619 0.00 0.00 0.00 3.96
4899 5317 1.357137 TCTGGTCCCTGTATTGTGCA 58.643 50.000 0.00 0.00 0.00 4.57
4900 5318 2.489938 TTCTGGTCCCTGTATTGTGC 57.510 50.000 0.00 0.00 0.00 4.57
4901 5319 4.194640 CAGATTCTGGTCCCTGTATTGTG 58.805 47.826 5.73 0.00 0.00 3.33
4902 5320 3.846588 ACAGATTCTGGTCCCTGTATTGT 59.153 43.478 17.66 0.00 38.02 2.71
4903 5321 4.494091 ACAGATTCTGGTCCCTGTATTG 57.506 45.455 17.66 0.00 38.02 1.90
4904 5322 6.012858 TGTTTACAGATTCTGGTCCCTGTATT 60.013 38.462 17.66 0.00 40.48 1.89
4905 5323 5.487488 TGTTTACAGATTCTGGTCCCTGTAT 59.513 40.000 17.66 0.00 40.48 2.29
4906 5324 4.841813 TGTTTACAGATTCTGGTCCCTGTA 59.158 41.667 17.66 0.00 40.07 2.74
4907 5325 3.650942 TGTTTACAGATTCTGGTCCCTGT 59.349 43.478 17.66 0.00 41.98 4.00
4908 5326 4.256920 CTGTTTACAGATTCTGGTCCCTG 58.743 47.826 17.66 4.04 46.59 4.45
4909 5327 4.559862 CTGTTTACAGATTCTGGTCCCT 57.440 45.455 17.66 0.00 46.59 4.20
4921 5339 1.098050 GGCAGCCCATCTGTTTACAG 58.902 55.000 0.00 3.47 44.66 2.74
4922 5340 0.676466 CGGCAGCCCATCTGTTTACA 60.676 55.000 5.63 0.00 44.66 2.41
4923 5341 1.376609 CCGGCAGCCCATCTGTTTAC 61.377 60.000 5.63 0.00 44.66 2.01
4924 5342 1.077787 CCGGCAGCCCATCTGTTTA 60.078 57.895 5.63 0.00 44.66 2.01
4925 5343 2.361610 CCGGCAGCCCATCTGTTT 60.362 61.111 5.63 0.00 44.66 2.83
4926 5344 3.650950 ACCGGCAGCCCATCTGTT 61.651 61.111 5.63 0.00 44.66 3.16
4927 5345 4.415150 CACCGGCAGCCCATCTGT 62.415 66.667 5.63 0.00 44.66 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.