Multiple sequence alignment - TraesCS5D01G262900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G262900 chr5D 100.000 4829 0 0 1 4829 368822281 368827109 0.000000e+00 8918.0
1 TraesCS5D01G262900 chr5D 82.873 543 56 17 3351 3877 368731767 368732288 2.050000e-123 453.0
2 TraesCS5D01G262900 chr5D 89.147 129 11 3 2639 2764 368730131 368730259 1.800000e-34 158.0
3 TraesCS5D01G262900 chr5D 76.744 258 57 3 3412 3667 369073586 369073842 1.810000e-29 141.0
4 TraesCS5D01G262900 chr5D 87.500 112 14 0 601 712 355190215 355190104 3.920000e-26 130.0
5 TraesCS5D01G262900 chr5D 77.828 221 30 13 4253 4455 241959784 241959565 8.490000e-23 119.0
6 TraesCS5D01G262900 chr5D 92.308 52 2 2 3874 3924 547276005 547276055 6.700000e-09 73.1
7 TraesCS5D01G262900 chr5B 92.035 2624 116 26 713 3295 436614755 436617326 0.000000e+00 3602.0
8 TraesCS5D01G262900 chr5B 93.414 577 31 2 3308 3877 436617468 436618044 0.000000e+00 848.0
9 TraesCS5D01G262900 chr5B 81.931 404 40 22 4452 4827 436618532 436618930 1.310000e-80 311.0
10 TraesCS5D01G262900 chr5B 81.899 337 33 13 3922 4231 436618043 436618378 4.790000e-65 259.0
11 TraesCS5D01G262900 chr5B 78.378 259 51 5 3412 3667 437569300 437569556 3.870000e-36 163.0
12 TraesCS5D01G262900 chr5B 75.976 333 68 11 2165 2494 436560044 436560367 1.390000e-35 161.0
13 TraesCS5D01G262900 chr5B 78.022 182 38 2 2247 2427 436464775 436464955 3.950000e-21 113.0
14 TraesCS5D01G262900 chr5A 81.553 1301 185 33 1356 2633 470954561 470953293 0.000000e+00 1022.0
15 TraesCS5D01G262900 chr5A 84.593 1019 127 18 2883 3876 470953117 470952104 0.000000e+00 985.0
16 TraesCS5D01G262900 chr5A 88.786 651 42 11 713 1352 470955341 470954711 0.000000e+00 769.0
17 TraesCS5D01G262900 chr5A 85.138 471 36 11 1 439 407774325 407774793 7.370000e-123 451.0
18 TraesCS5D01G262900 chr5A 86.458 288 35 3 429 715 596040524 596040808 3.630000e-81 313.0
19 TraesCS5D01G262900 chr5A 90.541 222 20 1 491 712 407774802 407775022 4.730000e-75 292.0
20 TraesCS5D01G262900 chr5A 81.416 339 38 17 1 318 219690288 219689954 2.230000e-63 254.0
21 TraesCS5D01G262900 chr5A 91.429 175 13 2 1 173 596040272 596040446 6.250000e-59 239.0
22 TraesCS5D01G262900 chr5A 90.909 121 8 3 2648 2765 470953243 470953123 5.000000e-35 159.0
23 TraesCS5D01G262900 chr5A 77.907 258 54 3 3412 3667 471474611 471474867 1.800000e-34 158.0
24 TraesCS5D01G262900 chr7D 97.238 543 13 2 170 712 113188059 113187519 0.000000e+00 918.0
25 TraesCS5D01G262900 chr7D 95.376 173 7 1 1 173 113188261 113188090 1.710000e-69 274.0
26 TraesCS5D01G262900 chr7D 79.904 209 38 3 4255 4459 587077191 587076983 3.010000e-32 150.0
27 TraesCS5D01G262900 chr7D 88.496 113 13 0 600 712 114607384 114607272 2.340000e-28 137.0
28 TraesCS5D01G262900 chr7D 83.333 84 11 3 637 720 535736445 535736525 1.860000e-09 75.0
29 TraesCS5D01G262900 chr7D 84.722 72 11 0 643 714 255795939 255795868 6.700000e-09 73.1
30 TraesCS5D01G262900 chr7A 96.036 555 20 2 170 722 78522455 78521901 0.000000e+00 902.0
31 TraesCS5D01G262900 chr7A 88.850 287 28 3 427 712 250692709 250692992 2.770000e-92 350.0
32 TraesCS5D01G262900 chr7A 94.798 173 8 1 1 173 78522657 78522486 7.970000e-68 268.0
33 TraesCS5D01G262900 chr7A 90.286 175 15 2 1 173 250692459 250692633 1.350000e-55 228.0
34 TraesCS5D01G262900 chr7A 84.925 199 22 7 519 713 459658263 459658457 1.370000e-45 195.0
35 TraesCS5D01G262900 chr7A 74.771 218 35 13 4257 4455 688618299 688618083 4.010000e-11 80.5
36 TraesCS5D01G262900 chr7A 93.478 46 1 2 3866 3910 485195196 485195240 3.120000e-07 67.6
37 TraesCS5D01G262900 chr4A 95.421 546 23 1 170 713 164719115 164718570 0.000000e+00 869.0
38 TraesCS5D01G262900 chr4A 96.552 174 5 1 1 173 164719319 164719146 2.200000e-73 287.0
39 TraesCS5D01G262900 chr4A 74.783 230 36 11 4248 4456 345965610 345965382 3.100000e-12 84.2
40 TraesCS5D01G262900 chr2A 94.203 552 20 3 170 719 751507023 751507564 0.000000e+00 832.0
41 TraesCS5D01G262900 chr2A 97.688 173 4 0 1 173 751506820 751506992 1.020000e-76 298.0
42 TraesCS5D01G262900 chr2A 81.140 228 24 14 4248 4456 100646074 100646301 1.080000e-36 165.0
43 TraesCS5D01G262900 chr2A 88.889 54 4 1 3875 3926 733396019 733395966 1.120000e-06 65.8
44 TraesCS5D01G262900 chr1B 93.064 173 10 2 1 173 41680194 41680024 8.020000e-63 252.0
45 TraesCS5D01G262900 chr1B 96.296 108 3 1 170 277 41679993 41679887 4.970000e-40 176.0
46 TraesCS5D01G262900 chr1B 95.833 48 2 0 3876 3923 195045750 195045797 1.440000e-10 78.7
47 TraesCS5D01G262900 chr2D 80.588 340 38 17 1 320 539257919 539257588 2.250000e-58 237.0
48 TraesCS5D01G262900 chr2D 100.000 29 0 0 3905 3933 629726059 629726031 2.000000e-03 54.7
49 TraesCS5D01G262900 chr3A 89.062 192 17 3 528 719 33141846 33141659 8.080000e-58 235.0
50 TraesCS5D01G262900 chr3A 82.028 217 19 14 4259 4456 70655254 70655039 2.990000e-37 167.0
51 TraesCS5D01G262900 chr3A 81.614 223 22 15 4253 4456 561134579 561134357 2.990000e-37 167.0
52 TraesCS5D01G262900 chr6D 89.655 174 17 1 1 173 95720133 95719960 2.260000e-53 220.0
53 TraesCS5D01G262900 chr6D 85.549 173 25 0 545 717 95719610 95719438 1.070000e-41 182.0
54 TraesCS5D01G262900 chr6D 93.478 46 2 1 3869 3913 430039503 430039458 3.120000e-07 67.6
55 TraesCS5D01G262900 chr7B 90.741 162 15 0 1 162 413595495 413595334 2.930000e-52 217.0
56 TraesCS5D01G262900 chr7B 95.238 84 4 0 1 84 557434141 557434058 3.030000e-27 134.0
57 TraesCS5D01G262900 chr7B 90.909 55 2 3 3873 3926 720496883 720496935 2.410000e-08 71.3
58 TraesCS5D01G262900 chr7B 86.441 59 6 2 3852 3909 314926823 314926880 4.030000e-06 63.9
59 TraesCS5D01G262900 chr6A 85.279 197 20 8 523 715 579100390 579100581 1.370000e-45 195.0
60 TraesCS5D01G262900 chr2B 82.353 221 19 14 4254 4455 88421831 88421612 1.790000e-39 174.0
61 TraesCS5D01G262900 chr1D 82.143 224 21 6 4251 4455 100462066 100461843 1.790000e-39 174.0
62 TraesCS5D01G262900 chr1D 87.050 139 17 1 4313 4450 121140156 121140294 6.470000e-34 156.0
63 TraesCS5D01G262900 chr3D 82.063 223 21 7 4253 4456 151445119 151444897 6.430000e-39 172.0
64 TraesCS5D01G262900 chr3D 83.193 119 19 1 598 715 95846019 95846137 1.840000e-19 108.0
65 TraesCS5D01G262900 chr3D 87.013 77 9 1 4251 4326 12235763 12235839 8.610000e-13 86.1
66 TraesCS5D01G262900 chr3D 90.000 60 3 2 3866 3923 590201960 590201902 1.860000e-09 75.0
67 TraesCS5D01G262900 chr3D 89.286 56 2 2 3874 3925 579261460 579261515 3.120000e-07 67.6
68 TraesCS5D01G262900 chr3B 90.909 121 11 0 4330 4450 110549255 110549375 3.870000e-36 163.0
69 TraesCS5D01G262900 chr3B 78.947 228 26 8 4251 4457 17595457 17595683 8.430000e-28 135.0
70 TraesCS5D01G262900 chr1A 76.037 217 30 12 4260 4456 542964528 542964314 5.150000e-15 93.5
71 TraesCS5D01G262900 chr1A 74.779 226 35 12 4251 4456 325230987 325231210 1.110000e-11 82.4
72 TraesCS5D01G262900 chr1A 74.336 226 36 12 4251 4456 482044266 482044489 5.180000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G262900 chr5D 368822281 368827109 4828 False 8918.00 8918 100.00000 1 4829 1 chr5D.!!$F1 4828
1 TraesCS5D01G262900 chr5D 368730131 368732288 2157 False 305.50 453 86.01000 2639 3877 2 chr5D.!!$F4 1238
2 TraesCS5D01G262900 chr5B 436614755 436618930 4175 False 1255.00 3602 87.31975 713 4827 4 chr5B.!!$F4 4114
3 TraesCS5D01G262900 chr5A 470952104 470955341 3237 True 733.75 1022 86.46025 713 3876 4 chr5A.!!$R2 3163
4 TraesCS5D01G262900 chr5A 407774325 407775022 697 False 371.50 451 87.83950 1 712 2 chr5A.!!$F2 711
5 TraesCS5D01G262900 chr5A 596040272 596040808 536 False 276.00 313 88.94350 1 715 2 chr5A.!!$F3 714
6 TraesCS5D01G262900 chr7D 113187519 113188261 742 True 596.00 918 96.30700 1 712 2 chr7D.!!$R4 711
7 TraesCS5D01G262900 chr7A 78521901 78522657 756 True 585.00 902 95.41700 1 722 2 chr7A.!!$R2 721
8 TraesCS5D01G262900 chr7A 250692459 250692992 533 False 289.00 350 89.56800 1 712 2 chr7A.!!$F3 711
9 TraesCS5D01G262900 chr4A 164718570 164719319 749 True 578.00 869 95.98650 1 713 2 chr4A.!!$R2 712
10 TraesCS5D01G262900 chr2A 751506820 751507564 744 False 565.00 832 95.94550 1 719 2 chr2A.!!$F2 718
11 TraesCS5D01G262900 chr6D 95719438 95720133 695 True 201.00 220 87.60200 1 717 2 chr6D.!!$R2 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 105 0.323629 TTCAGTGACCACCGGGATTC 59.676 55.0 6.32 0.0 38.05 2.52 F
1208 1295 1.117994 TGCGATCTCTCCTTCAGCAT 58.882 50.0 0.00 0.0 0.00 3.79 F
1457 1693 0.175760 TACTGATTGCCGACTCTGCC 59.824 55.0 0.00 0.0 0.00 4.85 F
1461 1697 0.674895 GATTGCCGACTCTGCCACTT 60.675 55.0 0.00 0.0 0.00 3.16 F
3453 4973 0.178961 GGGAGCTTGTGAAGGGGTTT 60.179 55.0 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 1684 0.249868 TCACCAAAGTGGCAGAGTCG 60.250 55.000 0.00 0.0 42.67 4.18 R
3113 3557 1.423541 ACAGCACATTAGACACCCCAA 59.576 47.619 0.00 0.0 0.00 4.12 R
3453 4973 0.039256 GCTCTCGTGCATTGCCAAAA 60.039 50.000 6.12 0.0 0.00 2.44 R
3555 5075 6.126968 TGTCAATCATAGCCAGAGAAGATTCA 60.127 38.462 0.00 0.0 0.00 2.57 R
4446 6000 0.175760 TCGCCAGAACATACTGCCTC 59.824 55.000 0.00 0.0 36.67 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 0.323629 TTCAGTGACCACCGGGATTC 59.676 55.000 6.32 0.00 38.05 2.52
290 333 1.191535 TAGCGTACTGGTTGGCAGAT 58.808 50.000 0.00 0.00 0.00 2.90
619 691 3.871574 CGTATTTGCACGCGGGGG 61.872 66.667 11.92 0.00 34.78 5.40
687 759 1.670811 CTGAACGTGGAGTGCAAGTTT 59.329 47.619 16.26 1.90 38.09 2.66
757 829 1.535833 TCAGGAAGACTCGAGTCCAC 58.464 55.000 35.83 28.68 45.85 4.02
1021 1108 3.452786 CGAGGCTGCGGAAGAGGA 61.453 66.667 0.00 0.00 0.00 3.71
1022 1109 2.982130 GAGGCTGCGGAAGAGGAA 59.018 61.111 0.00 0.00 0.00 3.36
1092 1179 1.328680 CAAAGCATTCTGATCGTCGGG 59.671 52.381 0.00 0.00 0.00 5.14
1107 1194 2.504519 GGGGACGGGGATTTCTCG 59.495 66.667 0.00 0.00 0.00 4.04
1193 1280 2.483013 CCTATGGTTCGATCCTTTGCGA 60.483 50.000 13.55 0.00 34.32 5.10
1208 1295 1.117994 TGCGATCTCTCCTTCAGCAT 58.882 50.000 0.00 0.00 0.00 3.79
1209 1296 1.483827 TGCGATCTCTCCTTCAGCATT 59.516 47.619 0.00 0.00 0.00 3.56
1215 1302 5.918011 CGATCTCTCCTTCAGCATTACTAAC 59.082 44.000 0.00 0.00 0.00 2.34
1348 1437 6.597672 TGCTTTTAGGCGATCTTCTATTTTCA 59.402 34.615 0.00 0.00 34.52 2.69
1349 1438 7.283127 TGCTTTTAGGCGATCTTCTATTTTCAT 59.717 33.333 0.00 0.00 34.52 2.57
1448 1684 6.016610 TGTTGAGGTAAAGTTTACTGATTGCC 60.017 38.462 21.91 6.85 0.00 4.52
1450 1686 4.901868 AGGTAAAGTTTACTGATTGCCGA 58.098 39.130 21.91 0.00 33.42 5.54
1453 1689 5.163884 GGTAAAGTTTACTGATTGCCGACTC 60.164 44.000 21.91 1.03 0.00 3.36
1454 1690 3.963428 AGTTTACTGATTGCCGACTCT 57.037 42.857 0.00 0.00 0.00 3.24
1455 1691 3.589988 AGTTTACTGATTGCCGACTCTG 58.410 45.455 0.00 0.00 0.00 3.35
1456 1692 2.010145 TTACTGATTGCCGACTCTGC 57.990 50.000 0.00 0.00 0.00 4.26
1457 1693 0.175760 TACTGATTGCCGACTCTGCC 59.824 55.000 0.00 0.00 0.00 4.85
1461 1697 0.674895 GATTGCCGACTCTGCCACTT 60.675 55.000 0.00 0.00 0.00 3.16
1472 1708 4.770795 ACTCTGCCACTTTGGTGATATAC 58.229 43.478 0.00 0.00 45.61 1.47
1649 1888 6.438741 ACCTATTTGAGTGATCTCTTGACTGA 59.561 38.462 0.00 0.00 40.98 3.41
1651 1890 8.637099 CCTATTTGAGTGATCTCTTGACTGATA 58.363 37.037 0.00 0.00 40.98 2.15
1724 1963 8.946085 CCAGCAACACTATTTCTATTTCAAGTA 58.054 33.333 0.00 0.00 0.00 2.24
1818 2071 8.578448 TGATCATTGTTTCATATGGTTCTTGA 57.422 30.769 2.13 0.88 0.00 3.02
1909 2170 4.207955 GGTCAAAGGGTGATTTAGGATCC 58.792 47.826 2.48 2.48 38.90 3.36
1910 2171 4.325030 GGTCAAAGGGTGATTTAGGATCCA 60.325 45.833 15.82 0.00 38.90 3.41
1911 2172 5.449553 GTCAAAGGGTGATTTAGGATCCAT 58.550 41.667 15.82 0.00 38.90 3.41
1912 2173 5.532779 GTCAAAGGGTGATTTAGGATCCATC 59.467 44.000 15.82 9.05 38.90 3.51
1913 2174 7.415646 GTCAAAGGGTGATTTAGGATCCATCC 61.416 46.154 15.82 1.00 42.16 3.51
2006 2267 3.053693 TGTGTCAGGCTAGCCCAAAATAT 60.054 43.478 30.42 6.90 36.58 1.28
2009 2270 4.412199 TGTCAGGCTAGCCCAAAATATACT 59.588 41.667 30.42 4.39 36.58 2.12
2104 2367 7.810260 AGTTATCTTGCCTCATTAATTCCTCT 58.190 34.615 0.00 0.00 0.00 3.69
2581 2851 4.792513 TCTTTGTTTGGGGGTTACAGTA 57.207 40.909 0.00 0.00 0.00 2.74
2623 2893 5.575157 CCACATCTCTATTAGGAGCTAGGA 58.425 45.833 0.00 0.00 33.70 2.94
2624 2894 5.652014 CCACATCTCTATTAGGAGCTAGGAG 59.348 48.000 0.00 0.00 33.70 3.69
2625 2895 6.245408 CACATCTCTATTAGGAGCTAGGAGT 58.755 44.000 0.00 0.00 33.70 3.85
2626 2896 6.719370 CACATCTCTATTAGGAGCTAGGAGTT 59.281 42.308 0.00 0.00 33.70 3.01
2627 2897 7.885922 CACATCTCTATTAGGAGCTAGGAGTTA 59.114 40.741 0.00 0.00 33.70 2.24
2628 2898 8.620177 ACATCTCTATTAGGAGCTAGGAGTTAT 58.380 37.037 0.00 0.00 33.70 1.89
2629 2899 9.120538 CATCTCTATTAGGAGCTAGGAGTTATC 57.879 40.741 0.00 0.00 33.70 1.75
2630 2900 7.635648 TCTCTATTAGGAGCTAGGAGTTATCC 58.364 42.308 0.00 0.00 38.27 2.59
2631 2901 7.462972 TCTCTATTAGGAGCTAGGAGTTATCCT 59.537 40.741 1.84 1.84 44.15 3.24
2749 3070 6.311935 TGAAATGCACCGTAGTTATGTACTTC 59.688 38.462 0.00 0.00 38.33 3.01
2825 3165 6.016360 AGTCAAGAGGTCATTCTAGATGATCG 60.016 42.308 0.00 0.00 34.50 3.69
3028 3471 5.147330 AGACTGATACGATTGACCACAAA 57.853 39.130 0.00 0.00 39.54 2.83
3118 3562 5.525378 TCGAAAATGTGAACAAATTTTGGGG 59.475 36.000 17.02 8.74 36.40 4.96
3417 4924 5.105063 GCTACCATTTGAATCTTTTGCTCC 58.895 41.667 0.00 0.00 0.00 4.70
3453 4973 0.178961 GGGAGCTTGTGAAGGGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
3555 5075 1.827969 AGTATCGAGCAACTTGCCTCT 59.172 47.619 10.25 0.00 46.52 3.69
3618 5138 1.893801 CAAGACTACCCCGGCTATAGG 59.106 57.143 0.00 0.00 0.00 2.57
3733 5253 1.012086 AGAACATGCATGCTACTGCG 58.988 50.000 26.53 0.29 45.30 5.18
3749 5269 4.071961 ACTGCGATATGTGCCAAGATAA 57.928 40.909 0.00 0.00 0.00 1.75
3761 5281 3.740832 TGCCAAGATAAATATGTCTCGCG 59.259 43.478 0.00 0.00 29.75 5.87
3768 5288 6.380190 AGATAAATATGTCTCGCGGTACTTC 58.620 40.000 6.13 0.00 0.00 3.01
3777 5297 0.248336 CGCGGTACTTCGACTATGCA 60.248 55.000 0.00 0.00 0.00 3.96
3781 5301 2.734175 CGGTACTTCGACTATGCAAGCA 60.734 50.000 0.00 0.00 0.00 3.91
3786 5306 3.257393 CTTCGACTATGCAAGCAGTCTT 58.743 45.455 18.66 0.00 39.23 3.01
3793 5313 3.736483 CAAGCAGTCTTGGCACGT 58.264 55.556 0.00 0.00 44.53 4.49
3807 5327 1.838568 GCACGTTCGGAGTTGGGAAC 61.839 60.000 0.00 0.00 39.26 3.62
3859 5379 5.619625 AGTGAACTGGTCGTAGTACTAAC 57.380 43.478 3.61 0.00 0.00 2.34
3877 5404 6.588348 ACTAACGGTGTGTTAACAAACTAC 57.412 37.500 24.64 14.42 42.31 2.73
3878 5405 6.340522 ACTAACGGTGTGTTAACAAACTACT 58.659 36.000 24.64 13.35 42.31 2.57
3879 5406 5.723492 AACGGTGTGTTAACAAACTACTC 57.277 39.130 24.64 10.08 39.61 2.59
3880 5407 4.122046 ACGGTGTGTTAACAAACTACTCC 58.878 43.478 24.64 14.19 38.27 3.85
3881 5408 3.495753 CGGTGTGTTAACAAACTACTCCC 59.504 47.826 24.64 9.32 38.27 4.30
3882 5409 4.711399 GGTGTGTTAACAAACTACTCCCT 58.289 43.478 24.64 0.00 38.27 4.20
3883 5410 4.753610 GGTGTGTTAACAAACTACTCCCTC 59.246 45.833 24.64 5.52 38.27 4.30
3884 5411 4.753610 GTGTGTTAACAAACTACTCCCTCC 59.246 45.833 19.79 0.00 38.27 4.30
3885 5412 3.992427 GTGTTAACAAACTACTCCCTCCG 59.008 47.826 10.51 0.00 0.00 4.63
3886 5413 3.642848 TGTTAACAAACTACTCCCTCCGT 59.357 43.478 5.64 0.00 0.00 4.69
3887 5414 4.240888 GTTAACAAACTACTCCCTCCGTC 58.759 47.826 0.00 0.00 0.00 4.79
3888 5415 1.264295 ACAAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
3889 5416 0.535797 CAAACTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
3890 5417 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
3891 5418 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
3892 5419 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3893 5420 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3894 5421 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3895 5422 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3896 5423 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3897 5424 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3898 5425 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3899 5426 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3900 5427 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3901 5428 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
3903 5430 4.461781 CCTCCGTCCCATAATATAAGACGT 59.538 45.833 17.31 0.00 46.62 4.34
3904 5431 5.047519 CCTCCGTCCCATAATATAAGACGTT 60.048 44.000 17.31 0.00 46.62 3.99
3905 5432 6.409524 TCCGTCCCATAATATAAGACGTTT 57.590 37.500 17.31 0.00 46.62 3.60
3906 5433 7.309377 CCTCCGTCCCATAATATAAGACGTTTA 60.309 40.741 17.31 0.00 46.62 2.01
3907 5434 8.125978 TCCGTCCCATAATATAAGACGTTTAT 57.874 34.615 17.31 0.00 46.62 1.40
3908 5435 8.030692 TCCGTCCCATAATATAAGACGTTTATG 58.969 37.037 17.31 7.97 46.62 1.90
3909 5436 7.277098 CCGTCCCATAATATAAGACGTTTATGG 59.723 40.741 20.40 20.40 46.62 2.74
3913 5440 8.181487 CCATAATATAAGACGTTTATGGGACG 57.819 38.462 19.90 0.00 43.66 4.79
3914 5441 7.277098 CCATAATATAAGACGTTTATGGGACGG 59.723 40.741 19.90 9.34 43.66 4.79
3915 5442 6.409524 AATATAAGACGTTTATGGGACGGA 57.590 37.500 11.05 0.00 44.34 4.69
3916 5443 2.667473 AAGACGTTTATGGGACGGAG 57.333 50.000 0.00 0.00 44.34 4.63
3917 5444 0.822164 AGACGTTTATGGGACGGAGG 59.178 55.000 0.00 0.00 44.34 4.30
3918 5445 0.179092 GACGTTTATGGGACGGAGGG 60.179 60.000 0.00 0.00 44.34 4.30
3919 5446 0.615544 ACGTTTATGGGACGGAGGGA 60.616 55.000 1.64 0.00 44.34 4.20
3920 5447 0.104304 CGTTTATGGGACGGAGGGAG 59.896 60.000 0.00 0.00 36.90 4.30
3921 5448 1.201424 GTTTATGGGACGGAGGGAGT 58.799 55.000 0.00 0.00 0.00 3.85
3922 5449 2.391678 GTTTATGGGACGGAGGGAGTA 58.608 52.381 0.00 0.00 0.00 2.59
3937 5464 2.904434 GGGAGTAGTTCTGAAACCTGGA 59.096 50.000 0.00 0.00 35.92 3.86
3941 5468 5.513267 GGAGTAGTTCTGAAACCTGGAATGT 60.513 44.000 0.00 0.00 35.92 2.71
3942 5469 5.941788 AGTAGTTCTGAAACCTGGAATGTT 58.058 37.500 0.00 0.00 35.92 2.71
3966 5493 1.542547 GGTGAACTTGATGTGGGACGT 60.543 52.381 0.00 0.00 0.00 4.34
3979 5506 1.142060 TGGGACGTCTTTTCATGTGGT 59.858 47.619 16.46 0.00 0.00 4.16
3981 5508 1.069227 GGACGTCTTTTCATGTGGTGC 60.069 52.381 16.46 0.00 0.00 5.01
3982 5509 0.586319 ACGTCTTTTCATGTGGTGCG 59.414 50.000 0.00 0.00 0.00 5.34
3983 5510 0.586319 CGTCTTTTCATGTGGTGCGT 59.414 50.000 0.00 0.00 0.00 5.24
3984 5511 1.660052 CGTCTTTTCATGTGGTGCGTG 60.660 52.381 0.00 0.00 35.47 5.34
3985 5512 1.333619 GTCTTTTCATGTGGTGCGTGT 59.666 47.619 0.00 0.00 35.64 4.49
3986 5513 2.020720 TCTTTTCATGTGGTGCGTGTT 58.979 42.857 0.00 0.00 35.64 3.32
3987 5514 2.118683 CTTTTCATGTGGTGCGTGTTG 58.881 47.619 0.00 0.00 35.64 3.33
3988 5515 1.383523 TTTCATGTGGTGCGTGTTGA 58.616 45.000 0.00 0.00 35.64 3.18
3990 5517 0.873721 TCATGTGGTGCGTGTTGATG 59.126 50.000 0.00 0.00 35.64 3.07
3991 5518 0.873721 CATGTGGTGCGTGTTGATGA 59.126 50.000 0.00 0.00 0.00 2.92
3992 5519 1.135888 CATGTGGTGCGTGTTGATGAG 60.136 52.381 0.00 0.00 0.00 2.90
3994 5521 1.270785 TGTGGTGCGTGTTGATGAGAT 60.271 47.619 0.00 0.00 0.00 2.75
3995 5522 1.129251 GTGGTGCGTGTTGATGAGATG 59.871 52.381 0.00 0.00 0.00 2.90
3996 5523 0.097674 GGTGCGTGTTGATGAGATGC 59.902 55.000 0.00 0.00 34.29 3.91
3998 5525 0.321475 TGCGTGTTGATGAGATGCCA 60.321 50.000 0.00 0.00 32.78 4.92
3999 5526 1.019673 GCGTGTTGATGAGATGCCAT 58.980 50.000 0.00 0.00 0.00 4.40
4000 5527 1.003116 GCGTGTTGATGAGATGCCATC 60.003 52.381 0.00 0.00 42.38 3.51
4001 5528 1.600957 CGTGTTGATGAGATGCCATCC 59.399 52.381 0.00 0.00 41.60 3.51
4002 5529 2.646930 GTGTTGATGAGATGCCATCCA 58.353 47.619 0.00 0.00 41.60 3.41
4003 5530 2.357009 GTGTTGATGAGATGCCATCCAC 59.643 50.000 0.00 0.00 41.60 4.02
4018 5561 3.329386 CATCCACCACTGTGTAACTGAG 58.671 50.000 7.08 0.00 41.09 3.35
4026 5569 5.164233 CCACTGTGTAACTGAGTAGATGTG 58.836 45.833 7.08 0.00 39.30 3.21
4027 5570 5.279006 CCACTGTGTAACTGAGTAGATGTGT 60.279 44.000 7.08 0.00 39.30 3.72
4028 5571 6.216569 CACTGTGTAACTGAGTAGATGTGTT 58.783 40.000 0.00 0.00 39.30 3.32
4029 5572 7.368059 CACTGTGTAACTGAGTAGATGTGTTA 58.632 38.462 0.00 0.00 39.30 2.41
4030 5573 7.326305 CACTGTGTAACTGAGTAGATGTGTTAC 59.674 40.741 0.00 0.00 41.63 2.50
4033 5576 6.807230 GTGTAACTGAGTAGATGTGTTACTGG 59.193 42.308 13.13 0.00 41.73 4.00
4034 5577 6.492429 TGTAACTGAGTAGATGTGTTACTGGT 59.508 38.462 13.13 0.00 41.73 4.00
4035 5578 5.646577 ACTGAGTAGATGTGTTACTGGTC 57.353 43.478 0.00 0.00 31.74 4.02
4074 5618 3.244976 GTGGTGATGTAAATGCAAGCAC 58.755 45.455 0.00 0.00 0.00 4.40
4083 5627 3.806625 AAATGCAAGCACTTCTGTTGT 57.193 38.095 0.00 0.00 0.00 3.32
4108 5652 3.583086 TGGTTTGTTTTTCCCTGTTTCCA 59.417 39.130 0.00 0.00 0.00 3.53
4131 5685 2.875296 TGCCAAGCTTTATTCACTGGT 58.125 42.857 0.00 0.00 0.00 4.00
4136 5690 3.423539 AGCTTTATTCACTGGTCTGCA 57.576 42.857 0.00 0.00 0.00 4.41
4148 5702 5.711506 TCACTGGTCTGCATATTCATTTTGT 59.288 36.000 0.00 0.00 0.00 2.83
4149 5703 6.209192 TCACTGGTCTGCATATTCATTTTGTT 59.791 34.615 0.00 0.00 0.00 2.83
4151 5705 6.015180 ACTGGTCTGCATATTCATTTTGTTGT 60.015 34.615 0.00 0.00 0.00 3.32
4154 5708 7.384660 TGGTCTGCATATTCATTTTGTTGTTTC 59.615 33.333 0.00 0.00 0.00 2.78
4175 5729 3.333680 TCTTATCCCTTCCAGCAAAGGTT 59.666 43.478 10.53 2.65 43.70 3.50
4176 5730 1.928868 ATCCCTTCCAGCAAAGGTTG 58.071 50.000 10.53 0.00 43.70 3.77
4200 5754 5.335897 GCAGATTTAGTGAAAACATGGCAGA 60.336 40.000 0.00 0.00 0.00 4.26
4231 5785 8.849543 ACCCTCTAAATTACTTCCATGTACTA 57.150 34.615 0.00 0.00 0.00 1.82
4232 5786 9.275572 ACCCTCTAAATTACTTCCATGTACTAA 57.724 33.333 0.00 0.00 0.00 2.24
4254 5808 9.975218 ACTAAAAATATTAACCCTCAGATGTGT 57.025 29.630 0.00 0.00 0.00 3.72
4257 5811 8.877864 AAAATATTAACCCTCAGATGTGTCAA 57.122 30.769 0.00 0.00 0.00 3.18
4258 5812 8.511604 AAATATTAACCCTCAGATGTGTCAAG 57.488 34.615 0.00 0.00 0.00 3.02
4260 5814 3.409026 AACCCTCAGATGTGTCAAGTC 57.591 47.619 0.00 0.00 0.00 3.01
4261 5815 2.329267 ACCCTCAGATGTGTCAAGTCA 58.671 47.619 0.00 0.00 0.00 3.41
4263 5817 3.136443 ACCCTCAGATGTGTCAAGTCAAA 59.864 43.478 0.00 0.00 0.00 2.69
4264 5818 3.499918 CCCTCAGATGTGTCAAGTCAAAC 59.500 47.826 0.00 0.00 0.00 2.93
4265 5819 4.384056 CCTCAGATGTGTCAAGTCAAACT 58.616 43.478 0.00 0.00 0.00 2.66
4267 5821 5.297776 CCTCAGATGTGTCAAGTCAAACTTT 59.702 40.000 0.00 0.00 36.03 2.66
4268 5822 6.483307 CCTCAGATGTGTCAAGTCAAACTTTA 59.517 38.462 0.00 0.00 36.03 1.85
4269 5823 7.246674 TCAGATGTGTCAAGTCAAACTTTAC 57.753 36.000 0.00 0.00 36.03 2.01
4270 5824 6.821160 TCAGATGTGTCAAGTCAAACTTTACA 59.179 34.615 3.40 3.40 39.27 2.41
4271 5825 7.335673 TCAGATGTGTCAAGTCAAACTTTACAA 59.664 33.333 8.07 1.87 42.03 2.41
4273 5827 8.519526 AGATGTGTCAAGTCAAACTTTACAAAA 58.480 29.630 8.07 2.32 42.03 2.44
4275 5829 8.682128 TGTGTCAAGTCAAACTTTACAAAATC 57.318 30.769 8.07 0.00 42.03 2.17
4277 5831 8.798153 GTGTCAAGTCAAACTTTACAAAATCTG 58.202 33.333 8.07 0.00 42.03 2.90
4279 5833 9.010366 GTCAAGTCAAACTTTACAAAATCTGAC 57.990 33.333 0.51 0.00 36.03 3.51
4280 5834 8.188139 TCAAGTCAAACTTTACAAAATCTGACC 58.812 33.333 0.00 0.00 36.03 4.02
4283 5837 8.527810 AGTCAAACTTTACAAAATCTGACCAAA 58.472 29.630 0.00 0.00 33.94 3.28
4284 5838 9.313118 GTCAAACTTTACAAAATCTGACCAAAT 57.687 29.630 0.00 0.00 0.00 2.32
4355 5909 8.523915 TGAATCTAACAATACTCATTTGGCAT 57.476 30.769 0.00 0.00 0.00 4.40
4356 5910 8.970020 TGAATCTAACAATACTCATTTGGCATT 58.030 29.630 0.00 0.00 0.00 3.56
4359 5913 7.761409 TCTAACAATACTCATTTGGCATTGTC 58.239 34.615 0.00 0.00 38.52 3.18
4360 5914 5.981088 ACAATACTCATTTGGCATTGTCA 57.019 34.783 0.00 0.00 35.48 3.58
4361 5915 6.343716 ACAATACTCATTTGGCATTGTCAA 57.656 33.333 0.00 0.00 35.48 3.18
4363 5917 6.814644 ACAATACTCATTTGGCATTGTCAATG 59.185 34.615 19.42 19.42 35.48 2.82
4365 5919 5.217978 ACTCATTTGGCATTGTCAATGTT 57.782 34.783 23.27 4.84 41.01 2.71
4366 5920 4.992319 ACTCATTTGGCATTGTCAATGTTG 59.008 37.500 23.27 14.33 41.01 3.33
4367 5921 5.211174 TCATTTGGCATTGTCAATGTTGA 57.789 34.783 23.27 15.89 41.01 3.18
4368 5922 5.795972 TCATTTGGCATTGTCAATGTTGAT 58.204 33.333 23.27 11.79 41.01 2.57
4369 5923 6.932947 TCATTTGGCATTGTCAATGTTGATA 58.067 32.000 23.27 8.96 41.01 2.15
4370 5924 7.557724 TCATTTGGCATTGTCAATGTTGATAT 58.442 30.769 23.27 10.50 41.01 1.63
4371 5925 8.041919 TCATTTGGCATTGTCAATGTTGATATT 58.958 29.630 23.27 4.25 41.01 1.28
4372 5926 8.670135 CATTTGGCATTGTCAATGTTGATATTT 58.330 29.630 23.27 3.01 41.01 1.40
4373 5927 8.618702 TTTGGCATTGTCAATGTTGATATTTT 57.381 26.923 23.27 0.00 41.01 1.82
4374 5928 8.618702 TTGGCATTGTCAATGTTGATATTTTT 57.381 26.923 23.27 0.00 41.01 1.94
4408 5962 9.793259 AGTTTGGTTGAAGTAGAGATATTTTGA 57.207 29.630 0.00 0.00 0.00 2.69
4409 5963 9.827411 GTTTGGTTGAAGTAGAGATATTTTGAC 57.173 33.333 0.00 0.00 0.00 3.18
4410 5964 9.793259 TTTGGTTGAAGTAGAGATATTTTGACT 57.207 29.630 0.00 0.00 0.00 3.41
4411 5965 9.793259 TTGGTTGAAGTAGAGATATTTTGACTT 57.207 29.630 0.00 0.00 0.00 3.01
4412 5966 9.436957 TGGTTGAAGTAGAGATATTTTGACTTC 57.563 33.333 11.40 11.40 41.92 3.01
4413 5967 9.436957 GGTTGAAGTAGAGATATTTTGACTTCA 57.563 33.333 14.74 14.74 46.64 3.02
4430 5984 9.809096 TTTGACTTCAAACAAAACTTATATGCA 57.191 25.926 0.07 0.00 40.55 3.96
4431 5985 9.462174 TTGACTTCAAACAAAACTTATATGCAG 57.538 29.630 0.00 0.00 32.11 4.41
4432 5986 8.845227 TGACTTCAAACAAAACTTATATGCAGA 58.155 29.630 0.00 0.00 0.00 4.26
4433 5987 9.118236 GACTTCAAACAAAACTTATATGCAGAC 57.882 33.333 0.00 0.00 0.00 3.51
4434 5988 8.850156 ACTTCAAACAAAACTTATATGCAGACT 58.150 29.630 0.00 0.00 0.00 3.24
4444 5998 9.740710 AAACTTATATGCAGACTAAAAAGGACT 57.259 29.630 0.00 0.00 0.00 3.85
4445 5999 8.723942 ACTTATATGCAGACTAAAAAGGACTG 57.276 34.615 0.00 0.00 0.00 3.51
4446 6000 7.770897 ACTTATATGCAGACTAAAAAGGACTGG 59.229 37.037 0.00 0.00 0.00 4.00
4447 6001 4.640771 ATGCAGACTAAAAAGGACTGGA 57.359 40.909 0.00 0.00 33.99 3.86
4448 6002 4.008074 TGCAGACTAAAAAGGACTGGAG 57.992 45.455 0.00 0.00 0.00 3.86
4449 6003 3.244561 TGCAGACTAAAAAGGACTGGAGG 60.245 47.826 0.00 0.00 0.00 4.30
4450 6004 3.339141 CAGACTAAAAAGGACTGGAGGC 58.661 50.000 0.00 0.00 0.00 4.70
4456 6010 3.356529 AAAAGGACTGGAGGCAGTATG 57.643 47.619 0.00 0.00 35.23 2.39
4472 6026 0.892755 TATGTTCTGGCGAGACGGTT 59.107 50.000 0.00 0.00 0.00 4.44
4489 6043 6.063404 AGACGGTTTTGTGGTTTTTAGGATA 58.937 36.000 0.00 0.00 0.00 2.59
4607 6165 0.766131 TCCCCCTTTGAAAGTACGCA 59.234 50.000 4.02 0.00 0.00 5.24
4610 6168 2.432444 CCCCTTTGAAAGTACGCATGA 58.568 47.619 4.02 0.00 0.00 3.07
4611 6169 3.016736 CCCCTTTGAAAGTACGCATGAT 58.983 45.455 4.02 0.00 0.00 2.45
4612 6170 3.065371 CCCCTTTGAAAGTACGCATGATC 59.935 47.826 4.02 0.00 0.00 2.92
4616 6174 1.658596 TGAAAGTACGCATGATCGTGC 59.341 47.619 26.87 26.87 43.21 5.34
4622 6180 3.868123 GCATGATCGTGCGCTGCA 61.868 61.111 23.38 0.00 35.10 4.41
4623 6181 3.019800 CATGATCGTGCGCTGCAT 58.980 55.556 9.73 2.01 41.91 3.96
4643 6206 4.907582 GCATTTGCATTTCAAAAGAACTGC 59.092 37.500 11.96 11.96 46.60 4.40
4676 6257 1.073923 ACTCCCTTGGCGTTTCAGATT 59.926 47.619 0.00 0.00 0.00 2.40
4680 6261 1.533625 CTTGGCGTTTCAGATTCCCA 58.466 50.000 0.00 0.00 0.00 4.37
4681 6262 2.094675 CTTGGCGTTTCAGATTCCCAT 58.905 47.619 0.00 0.00 0.00 4.00
4682 6263 1.462616 TGGCGTTTCAGATTCCCATG 58.537 50.000 0.00 0.00 0.00 3.66
4683 6264 1.004161 TGGCGTTTCAGATTCCCATGA 59.996 47.619 0.00 0.00 0.00 3.07
4684 6265 1.672881 GGCGTTTCAGATTCCCATGAG 59.327 52.381 0.00 0.00 0.00 2.90
4685 6266 2.359900 GCGTTTCAGATTCCCATGAGT 58.640 47.619 0.00 0.00 0.00 3.41
4686 6267 2.096496 GCGTTTCAGATTCCCATGAGTG 59.904 50.000 0.00 0.00 0.00 3.51
4687 6268 3.338249 CGTTTCAGATTCCCATGAGTGT 58.662 45.455 0.00 0.00 0.00 3.55
4688 6269 3.125829 CGTTTCAGATTCCCATGAGTGTG 59.874 47.826 0.00 0.00 0.00 3.82
4689 6270 4.326826 GTTTCAGATTCCCATGAGTGTGA 58.673 43.478 0.00 0.00 30.16 3.58
4700 6281 6.582636 TCCCATGAGTGTGAATTACTGTATC 58.417 40.000 0.00 0.00 0.00 2.24
4761 6342 4.025401 GCACAACCCAAGGCGACG 62.025 66.667 0.00 0.00 0.00 5.12
4762 6343 3.353836 CACAACCCAAGGCGACGG 61.354 66.667 0.00 0.00 0.00 4.79
4763 6344 3.552384 ACAACCCAAGGCGACGGA 61.552 61.111 0.00 0.00 0.00 4.69
4764 6345 3.047877 CAACCCAAGGCGACGGAC 61.048 66.667 0.00 0.00 0.00 4.79
4777 6358 2.065512 CGACGGACACATCACAAATGA 58.934 47.619 0.00 0.00 39.83 2.57
4785 6366 3.441572 ACACATCACAAATGAAGCTAGCC 59.558 43.478 12.13 0.00 38.69 3.93
4786 6367 3.693085 CACATCACAAATGAAGCTAGCCT 59.307 43.478 12.13 0.00 38.69 4.58
4822 6416 5.127031 GCCATCTACAAATAAAAAGCCCTCA 59.873 40.000 0.00 0.00 0.00 3.86
4827 6421 7.913789 TCTACAAATAAAAAGCCCTCAGTCTA 58.086 34.615 0.00 0.00 0.00 2.59
4828 6422 8.380099 TCTACAAATAAAAAGCCCTCAGTCTAA 58.620 33.333 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 333 0.105964 GCTCATGTACCGGCATACCA 59.894 55.000 0.00 0.00 34.57 3.25
619 691 3.989817 GGAATTGTGGTCATTCAACTTGC 59.010 43.478 0.00 0.00 0.00 4.01
687 759 6.493802 AGAGCTAATATCACCGGAAGTCATAA 59.506 38.462 9.46 0.00 0.00 1.90
887 967 2.362889 CGCCTTGCCCCTCCAATT 60.363 61.111 0.00 0.00 0.00 2.32
934 1014 4.986708 GCCCCTTTCCCGCCAACA 62.987 66.667 0.00 0.00 0.00 3.33
1021 1108 3.711782 CCTCCCCCTCCCCCTCTT 61.712 72.222 0.00 0.00 0.00 2.85
1092 1179 0.535797 AGAACGAGAAATCCCCGTCC 59.464 55.000 0.00 0.00 35.28 4.79
1193 1280 5.737635 GCGTTAGTAATGCTGAAGGAGAGAT 60.738 44.000 18.06 0.00 40.27 2.75
1260 1347 3.758554 CCATTCTTGAAACCCTAGGTGTG 59.241 47.826 8.29 0.00 35.34 3.82
1363 1599 8.786826 AATGTACCAAATTCTCGTAGATTTCA 57.213 30.769 0.00 0.00 33.89 2.69
1365 1601 8.883731 CAGAATGTACCAAATTCTCGTAGATTT 58.116 33.333 4.40 0.00 41.39 2.17
1448 1684 0.249868 TCACCAAAGTGGCAGAGTCG 60.250 55.000 0.00 0.00 42.67 4.18
1450 1686 4.680708 CGTATATCACCAAAGTGGCAGAGT 60.681 45.833 0.00 0.00 42.67 3.24
1453 1689 3.792401 TCGTATATCACCAAAGTGGCAG 58.208 45.455 0.00 0.00 42.67 4.85
1454 1690 3.792401 CTCGTATATCACCAAAGTGGCA 58.208 45.455 0.00 0.00 42.67 4.92
1455 1691 2.544267 GCTCGTATATCACCAAAGTGGC 59.456 50.000 0.00 0.00 42.67 5.01
1456 1692 4.060038 AGCTCGTATATCACCAAAGTGG 57.940 45.455 0.00 0.00 44.64 4.00
1457 1693 4.681942 GCTAGCTCGTATATCACCAAAGTG 59.318 45.833 7.70 0.00 46.00 3.16
1461 1697 3.634910 TGTGCTAGCTCGTATATCACCAA 59.365 43.478 17.23 0.00 0.00 3.67
1503 1739 5.732331 TTCCATCATAAAACCTCTCCCAT 57.268 39.130 0.00 0.00 0.00 4.00
1539 1777 4.667519 ATAAGAAAACGGGAGCGACTAT 57.332 40.909 0.00 0.00 0.00 2.12
1613 1852 6.338146 TCACTCAAATAGGTCTCCGTAATTG 58.662 40.000 0.00 0.00 0.00 2.32
1665 1904 3.835395 TCCGCCCCAAGATAAACAATTTT 59.165 39.130 0.00 0.00 0.00 1.82
1729 1968 9.308000 ACATCTGGTTCCATAATAGAAACAAAA 57.692 29.630 0.00 0.00 40.29 2.44
1733 1972 9.046296 CACTACATCTGGTTCCATAATAGAAAC 57.954 37.037 0.00 0.00 0.00 2.78
1738 1977 7.985184 GTGTTCACTACATCTGGTTCCATAATA 59.015 37.037 0.00 0.00 39.39 0.98
1796 2035 8.469200 GGATTCAAGAACCATATGAAACAATGA 58.531 33.333 3.65 0.00 36.72 2.57
1909 2170 4.932146 AGTTCGAAAGGTTTTGTTGGATG 58.068 39.130 0.00 0.00 0.00 3.51
1910 2171 5.126384 TCAAGTTCGAAAGGTTTTGTTGGAT 59.874 36.000 0.00 0.00 0.00 3.41
1911 2172 4.459685 TCAAGTTCGAAAGGTTTTGTTGGA 59.540 37.500 0.00 0.00 0.00 3.53
1912 2173 4.739195 TCAAGTTCGAAAGGTTTTGTTGG 58.261 39.130 0.00 0.00 0.00 3.77
1913 2174 6.698359 TTTCAAGTTCGAAAGGTTTTGTTG 57.302 33.333 0.00 0.00 31.38 3.33
1976 2237 2.739379 GCTAGCCTGACACAGAGTTTTC 59.261 50.000 2.29 0.00 32.44 2.29
2006 2267 7.612633 GGTTACATGGAAATAAACCAGGAAGTA 59.387 37.037 0.00 0.00 40.97 2.24
2009 2270 6.315714 TGGTTACATGGAAATAAACCAGGAA 58.684 36.000 0.00 0.00 43.44 3.36
2079 2340 7.810260 AGAGGAATTAATGAGGCAAGATAACT 58.190 34.615 0.00 0.00 0.00 2.24
2085 2346 6.764308 TCAAAGAGGAATTAATGAGGCAAG 57.236 37.500 0.00 0.00 0.00 4.01
2104 2367 5.221303 GCTTAATGCATATGGAAGCCTCAAA 60.221 40.000 18.05 0.00 42.31 2.69
2581 2851 1.689892 GGCCCTAGGACTACTGAAGCT 60.690 57.143 11.48 0.00 0.00 3.74
2623 2893 6.139679 TGATGGAAACTTTGGAGGATAACT 57.860 37.500 0.00 0.00 0.00 2.24
2624 2894 7.260603 CAATGATGGAAACTTTGGAGGATAAC 58.739 38.462 0.00 0.00 0.00 1.89
2625 2895 6.127366 GCAATGATGGAAACTTTGGAGGATAA 60.127 38.462 0.00 0.00 0.00 1.75
2626 2896 5.360714 GCAATGATGGAAACTTTGGAGGATA 59.639 40.000 0.00 0.00 0.00 2.59
2627 2897 4.161001 GCAATGATGGAAACTTTGGAGGAT 59.839 41.667 0.00 0.00 0.00 3.24
2628 2898 3.511146 GCAATGATGGAAACTTTGGAGGA 59.489 43.478 0.00 0.00 0.00 3.71
2629 2899 3.512724 AGCAATGATGGAAACTTTGGAGG 59.487 43.478 0.00 0.00 0.00 4.30
2630 2900 4.796038 AGCAATGATGGAAACTTTGGAG 57.204 40.909 0.00 0.00 0.00 3.86
2631 2901 5.549742 AAAGCAATGATGGAAACTTTGGA 57.450 34.783 0.00 0.00 0.00 3.53
2632 2902 5.759273 TGAAAAGCAATGATGGAAACTTTGG 59.241 36.000 0.00 0.00 0.00 3.28
2633 2903 6.293027 GGTGAAAAGCAATGATGGAAACTTTG 60.293 38.462 0.00 0.00 0.00 2.77
2634 2904 5.759763 GGTGAAAAGCAATGATGGAAACTTT 59.240 36.000 0.00 0.00 0.00 2.66
2635 2905 5.070847 AGGTGAAAAGCAATGATGGAAACTT 59.929 36.000 0.00 0.00 0.00 2.66
2672 2990 6.127054 ACTCATGGTAAAGTATAGCAGCAAGA 60.127 38.462 0.00 0.00 0.00 3.02
2825 3165 6.217294 GTCCTTGGTCTATGATAGCTTGTAC 58.783 44.000 0.00 0.00 0.00 2.90
3028 3471 7.881142 TGGATCACGAACAGAAATTATTGTTT 58.119 30.769 8.40 0.00 37.63 2.83
3113 3557 1.423541 ACAGCACATTAGACACCCCAA 59.576 47.619 0.00 0.00 0.00 4.12
3118 3562 7.429340 GCATACATTTTACAGCACATTAGACAC 59.571 37.037 0.00 0.00 0.00 3.67
3305 3754 7.244886 AGAAAAGGTTCCCCAAAAATATCAG 57.755 36.000 0.00 0.00 33.92 2.90
3417 4924 3.862642 GCTCCCTATGCAACCTAAGATCG 60.863 52.174 0.00 0.00 0.00 3.69
3453 4973 0.039256 GCTCTCGTGCATTGCCAAAA 60.039 50.000 6.12 0.00 0.00 2.44
3555 5075 6.126968 TGTCAATCATAGCCAGAGAAGATTCA 60.127 38.462 0.00 0.00 0.00 2.57
3618 5138 3.157087 TGAACCATTTCCTCTCTTTGGC 58.843 45.455 0.00 0.00 0.00 4.52
3733 5253 8.598924 CGAGACATATTTATCTTGGCACATATC 58.401 37.037 0.00 0.00 39.30 1.63
3749 5269 2.615447 TCGAAGTACCGCGAGACATATT 59.385 45.455 8.23 0.00 32.13 1.28
3761 5281 2.860735 CTGCTTGCATAGTCGAAGTACC 59.139 50.000 0.00 0.00 0.00 3.34
3777 5297 1.498865 CGAACGTGCCAAGACTGCTT 61.499 55.000 0.00 0.00 33.74 3.91
3781 5301 1.006102 CTCCGAACGTGCCAAGACT 60.006 57.895 0.00 0.00 0.00 3.24
3786 5306 2.280524 CCAACTCCGAACGTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
3788 5308 1.595929 TTCCCAACTCCGAACGTGC 60.596 57.895 0.00 0.00 0.00 5.34
3792 5312 1.670083 CCCGTTCCCAACTCCGAAC 60.670 63.158 0.00 0.00 35.97 3.95
3793 5313 2.745037 CCCGTTCCCAACTCCGAA 59.255 61.111 0.00 0.00 0.00 4.30
3859 5379 3.495753 GGGAGTAGTTTGTTAACACACCG 59.504 47.826 18.84 0.00 36.70 4.94
3877 5404 5.127356 GTCTTATATTATGGGACGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
3878 5405 5.021458 GTCTTATATTATGGGACGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
3879 5406 4.142227 CGTCTTATATTATGGGACGGAGGG 60.142 50.000 17.59 0.46 43.69 4.30
3880 5407 4.995124 CGTCTTATATTATGGGACGGAGG 58.005 47.826 17.59 0.00 43.69 4.30
3884 5411 8.181487 CCATAAACGTCTTATATTATGGGACG 57.819 38.462 19.90 20.89 45.66 4.79
3889 5416 8.030692 TCCGTCCCATAAACGTCTTATATTATG 58.969 37.037 7.97 7.97 38.44 1.90
3890 5417 8.125978 TCCGTCCCATAAACGTCTTATATTAT 57.874 34.615 0.00 0.00 38.44 1.28
3891 5418 7.309377 CCTCCGTCCCATAAACGTCTTATATTA 60.309 40.741 0.00 0.00 38.44 0.98
3892 5419 6.409524 TCCGTCCCATAAACGTCTTATATT 57.590 37.500 0.00 0.00 38.44 1.28
3893 5420 5.047519 CCTCCGTCCCATAAACGTCTTATAT 60.048 44.000 0.00 0.00 38.44 0.86
3894 5421 4.279169 CCTCCGTCCCATAAACGTCTTATA 59.721 45.833 0.00 0.00 38.44 0.98
3895 5422 3.069158 CCTCCGTCCCATAAACGTCTTAT 59.931 47.826 0.00 0.00 38.44 1.73
3896 5423 2.428171 CCTCCGTCCCATAAACGTCTTA 59.572 50.000 0.00 0.00 38.44 2.10
3897 5424 1.206371 CCTCCGTCCCATAAACGTCTT 59.794 52.381 0.00 0.00 38.44 3.01
3898 5425 0.822164 CCTCCGTCCCATAAACGTCT 59.178 55.000 0.00 0.00 38.44 4.18
3899 5426 0.179092 CCCTCCGTCCCATAAACGTC 60.179 60.000 0.00 0.00 38.44 4.34
3900 5427 0.615544 TCCCTCCGTCCCATAAACGT 60.616 55.000 0.00 0.00 38.44 3.99
3901 5428 0.104304 CTCCCTCCGTCCCATAAACG 59.896 60.000 0.00 0.00 39.78 3.60
3902 5429 1.201424 ACTCCCTCCGTCCCATAAAC 58.799 55.000 0.00 0.00 0.00 2.01
3903 5430 2.023695 ACTACTCCCTCCGTCCCATAAA 60.024 50.000 0.00 0.00 0.00 1.40
3904 5431 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3905 5432 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3906 5433 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
3907 5434 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
3908 5435 0.033306 AGAACTACTCCCTCCGTCCC 60.033 60.000 0.00 0.00 0.00 4.46
3909 5436 1.104630 CAGAACTACTCCCTCCGTCC 58.895 60.000 0.00 0.00 0.00 4.79
3910 5437 2.125773 TCAGAACTACTCCCTCCGTC 57.874 55.000 0.00 0.00 0.00 4.79
3911 5438 2.561858 GTTTCAGAACTACTCCCTCCGT 59.438 50.000 0.00 0.00 32.91 4.69
3912 5439 2.094130 GGTTTCAGAACTACTCCCTCCG 60.094 54.545 0.00 0.00 36.03 4.63
3913 5440 3.055747 CAGGTTTCAGAACTACTCCCTCC 60.056 52.174 0.00 0.00 36.03 4.30
3914 5441 3.055747 CCAGGTTTCAGAACTACTCCCTC 60.056 52.174 0.00 0.00 36.03 4.30
3915 5442 2.907042 CCAGGTTTCAGAACTACTCCCT 59.093 50.000 0.00 0.00 36.03 4.20
3916 5443 2.904434 TCCAGGTTTCAGAACTACTCCC 59.096 50.000 0.00 0.00 36.03 4.30
3917 5444 4.618920 TTCCAGGTTTCAGAACTACTCC 57.381 45.455 0.00 0.00 36.03 3.85
3918 5445 5.552178 ACATTCCAGGTTTCAGAACTACTC 58.448 41.667 0.00 0.00 36.03 2.59
3919 5446 5.568620 ACATTCCAGGTTTCAGAACTACT 57.431 39.130 0.00 0.00 36.03 2.57
3920 5447 6.635030 AAACATTCCAGGTTTCAGAACTAC 57.365 37.500 0.00 0.00 33.39 2.73
3921 5448 7.417342 CCAAAAACATTCCAGGTTTCAGAACTA 60.417 37.037 0.00 0.00 37.47 2.24
3922 5449 6.340522 CAAAAACATTCCAGGTTTCAGAACT 58.659 36.000 0.00 0.00 37.47 3.01
3937 5464 5.816777 CCACATCAAGTTCACCAAAAACATT 59.183 36.000 0.00 0.00 0.00 2.71
3941 5468 4.026744 TCCCACATCAAGTTCACCAAAAA 58.973 39.130 0.00 0.00 0.00 1.94
3942 5469 3.383185 GTCCCACATCAAGTTCACCAAAA 59.617 43.478 0.00 0.00 0.00 2.44
3966 5493 1.674359 ACACGCACCACATGAAAAGA 58.326 45.000 0.00 0.00 0.00 2.52
3979 5506 0.321475 TGGCATCTCATCAACACGCA 60.321 50.000 0.00 0.00 0.00 5.24
3981 5508 1.600957 GGATGGCATCTCATCAACACG 59.399 52.381 25.48 0.00 43.82 4.49
3982 5509 2.357009 GTGGATGGCATCTCATCAACAC 59.643 50.000 25.48 18.36 43.88 3.32
3983 5510 2.646930 GTGGATGGCATCTCATCAACA 58.353 47.619 25.48 11.29 43.88 3.33
3984 5511 1.952296 GGTGGATGGCATCTCATCAAC 59.048 52.381 25.48 14.50 43.77 3.18
3985 5512 1.565288 TGGTGGATGGCATCTCATCAA 59.435 47.619 25.48 10.85 43.82 2.57
3986 5513 1.134007 GTGGTGGATGGCATCTCATCA 60.134 52.381 25.48 22.80 43.82 3.07
3987 5514 1.142465 AGTGGTGGATGGCATCTCATC 59.858 52.381 25.48 20.78 41.93 2.92
3988 5515 1.133884 CAGTGGTGGATGGCATCTCAT 60.134 52.381 25.48 5.85 0.00 2.90
3990 5517 0.254178 ACAGTGGTGGATGGCATCTC 59.746 55.000 25.48 18.07 0.00 2.75
3991 5518 0.034767 CACAGTGGTGGATGGCATCT 60.035 55.000 25.48 3.09 41.45 2.90
3992 5519 2.485677 CACAGTGGTGGATGGCATC 58.514 57.895 19.23 19.23 41.45 3.91
4002 5529 4.833380 ACATCTACTCAGTTACACAGTGGT 59.167 41.667 5.31 0.00 0.00 4.16
4003 5530 5.164233 CACATCTACTCAGTTACACAGTGG 58.836 45.833 5.31 0.00 0.00 4.00
4018 5561 8.033038 TCATACTTTGACCAGTAACACATCTAC 58.967 37.037 0.00 0.00 32.90 2.59
4026 5569 7.724305 TCTTGTTCATACTTTGACCAGTAAC 57.276 36.000 0.00 0.00 32.90 2.50
4027 5570 8.783093 CAATCTTGTTCATACTTTGACCAGTAA 58.217 33.333 0.00 0.00 32.90 2.24
4028 5571 7.936847 ACAATCTTGTTCATACTTTGACCAGTA 59.063 33.333 0.00 0.00 38.47 2.74
4029 5572 6.772716 ACAATCTTGTTCATACTTTGACCAGT 59.227 34.615 0.00 0.00 38.47 4.00
4030 5573 7.080099 CACAATCTTGTTCATACTTTGACCAG 58.920 38.462 0.00 0.00 39.91 4.00
4033 5576 6.857964 CACCACAATCTTGTTCATACTTTGAC 59.142 38.462 0.00 0.00 39.91 3.18
4034 5577 6.770303 TCACCACAATCTTGTTCATACTTTGA 59.230 34.615 0.00 0.00 39.91 2.69
4035 5578 6.969366 TCACCACAATCTTGTTCATACTTTG 58.031 36.000 0.00 0.00 39.91 2.77
4074 5618 7.011016 GGGAAAAACAAACCATTACAACAGAAG 59.989 37.037 0.00 0.00 0.00 2.85
4083 5627 6.070194 TGGAAACAGGGAAAAACAAACCATTA 60.070 34.615 0.00 0.00 35.01 1.90
4108 5652 3.256631 CCAGTGAATAAAGCTTGGCAACT 59.743 43.478 0.00 0.00 37.61 3.16
4148 5702 4.380843 TGCTGGAAGGGATAAGAAACAA 57.619 40.909 0.00 0.00 0.00 2.83
4149 5703 4.380843 TTGCTGGAAGGGATAAGAAACA 57.619 40.909 0.00 0.00 0.00 2.83
4151 5705 4.344104 CCTTTGCTGGAAGGGATAAGAAA 58.656 43.478 3.92 0.00 42.04 2.52
4175 5729 4.280425 TGCCATGTTTTCACTAAATCTGCA 59.720 37.500 0.00 0.00 0.00 4.41
4176 5730 4.808558 TGCCATGTTTTCACTAAATCTGC 58.191 39.130 0.00 0.00 0.00 4.26
4231 5785 8.877864 TGACACATCTGAGGGTTAATATTTTT 57.122 30.769 0.00 0.00 0.00 1.94
4232 5786 8.877864 TTGACACATCTGAGGGTTAATATTTT 57.122 30.769 0.00 0.00 0.00 1.82
4233 5787 8.109634 ACTTGACACATCTGAGGGTTAATATTT 58.890 33.333 0.00 0.00 0.00 1.40
4234 5788 7.633789 ACTTGACACATCTGAGGGTTAATATT 58.366 34.615 0.00 0.00 0.00 1.28
4235 5789 7.092891 TGACTTGACACATCTGAGGGTTAATAT 60.093 37.037 0.00 0.00 0.00 1.28
4237 5791 5.013079 TGACTTGACACATCTGAGGGTTAAT 59.987 40.000 0.00 0.00 0.00 1.40
4239 5793 3.901222 TGACTTGACACATCTGAGGGTTA 59.099 43.478 0.00 0.00 0.00 2.85
4240 5794 2.705658 TGACTTGACACATCTGAGGGTT 59.294 45.455 0.00 0.00 0.00 4.11
4241 5795 2.329267 TGACTTGACACATCTGAGGGT 58.671 47.619 0.00 0.00 0.00 4.34
4242 5796 3.407424 TTGACTTGACACATCTGAGGG 57.593 47.619 0.00 0.00 0.00 4.30
4243 5797 4.384056 AGTTTGACTTGACACATCTGAGG 58.616 43.478 0.00 0.00 0.00 3.86
4244 5798 5.998454 AAGTTTGACTTGACACATCTGAG 57.002 39.130 0.00 0.00 37.00 3.35
4245 5799 6.821160 TGTAAAGTTTGACTTGACACATCTGA 59.179 34.615 6.87 0.00 42.97 3.27
4246 5800 7.015226 TGTAAAGTTTGACTTGACACATCTG 57.985 36.000 6.87 0.00 42.97 2.90
4248 5802 8.682128 TTTTGTAAAGTTTGACTTGACACATC 57.318 30.769 9.91 0.00 46.40 3.06
4250 5804 8.519526 AGATTTTGTAAAGTTTGACTTGACACA 58.480 29.630 9.91 2.50 46.40 3.72
4252 5806 8.735315 TCAGATTTTGTAAAGTTTGACTTGACA 58.265 29.630 6.87 6.87 45.40 3.58
4253 5807 9.010366 GTCAGATTTTGTAAAGTTTGACTTGAC 57.990 33.333 12.92 2.03 39.53 3.18
4254 5808 8.188139 GGTCAGATTTTGTAAAGTTTGACTTGA 58.812 33.333 17.00 0.00 38.66 3.02
4255 5809 7.973388 TGGTCAGATTTTGTAAAGTTTGACTTG 59.027 33.333 17.00 0.00 38.66 3.16
4257 5811 7.639113 TGGTCAGATTTTGTAAAGTTTGACT 57.361 32.000 17.00 0.00 38.73 3.41
4258 5812 8.696410 TTTGGTCAGATTTTGTAAAGTTTGAC 57.304 30.769 12.20 12.20 38.31 3.18
4328 5882 9.625747 TGCCAAATGAGTATTGTTAGATTCATA 57.374 29.630 0.00 0.00 0.00 2.15
4331 5885 9.241317 CAATGCCAAATGAGTATTGTTAGATTC 57.759 33.333 0.00 0.00 0.00 2.52
4332 5886 8.752187 ACAATGCCAAATGAGTATTGTTAGATT 58.248 29.630 10.29 0.00 38.42 2.40
4333 5887 8.297470 ACAATGCCAAATGAGTATTGTTAGAT 57.703 30.769 10.29 0.00 38.42 1.98
4334 5888 7.392953 TGACAATGCCAAATGAGTATTGTTAGA 59.607 33.333 14.41 5.37 40.78 2.10
4335 5889 7.537715 TGACAATGCCAAATGAGTATTGTTAG 58.462 34.615 14.41 0.00 40.78 2.34
4336 5890 7.459795 TGACAATGCCAAATGAGTATTGTTA 57.540 32.000 14.41 10.41 40.78 2.41
4338 5892 5.981088 TGACAATGCCAAATGAGTATTGT 57.019 34.783 13.66 13.66 42.68 2.71
4339 5893 6.814644 ACATTGACAATGCCAAATGAGTATTG 59.185 34.615 24.85 0.96 42.69 1.90
4341 5895 6.534475 ACATTGACAATGCCAAATGAGTAT 57.466 33.333 24.85 1.45 42.69 2.12
4343 5897 4.877378 ACATTGACAATGCCAAATGAGT 57.123 36.364 24.85 2.62 42.69 3.41
4344 5898 5.231702 TCAACATTGACAATGCCAAATGAG 58.768 37.500 24.85 8.61 42.69 2.90
4345 5899 5.211174 TCAACATTGACAATGCCAAATGA 57.789 34.783 24.85 17.92 42.69 2.57
4346 5900 7.780008 ATATCAACATTGACAATGCCAAATG 57.220 32.000 24.85 16.32 42.69 2.32
4347 5901 8.795842 AAATATCAACATTGACAATGCCAAAT 57.204 26.923 24.85 16.05 42.69 2.32
4348 5902 8.618702 AAAATATCAACATTGACAATGCCAAA 57.381 26.923 24.85 10.84 42.69 3.28
4382 5936 9.793259 TCAAAATATCTCTACTTCAACCAAACT 57.207 29.630 0.00 0.00 0.00 2.66
4383 5937 9.827411 GTCAAAATATCTCTACTTCAACCAAAC 57.173 33.333 0.00 0.00 0.00 2.93
4384 5938 9.793259 AGTCAAAATATCTCTACTTCAACCAAA 57.207 29.630 0.00 0.00 0.00 3.28
4385 5939 9.793259 AAGTCAAAATATCTCTACTTCAACCAA 57.207 29.630 0.00 0.00 0.00 3.67
4386 5940 9.436957 GAAGTCAAAATATCTCTACTTCAACCA 57.563 33.333 0.00 0.00 41.42 3.67
4387 5941 9.436957 TGAAGTCAAAATATCTCTACTTCAACC 57.563 33.333 11.99 0.00 45.75 3.77
4404 5958 9.809096 TGCATATAAGTTTTGTTTGAAGTCAAA 57.191 25.926 2.32 2.32 42.90 2.69
4405 5959 9.462174 CTGCATATAAGTTTTGTTTGAAGTCAA 57.538 29.630 0.00 0.00 0.00 3.18
4406 5960 8.845227 TCTGCATATAAGTTTTGTTTGAAGTCA 58.155 29.630 0.00 0.00 0.00 3.41
4407 5961 9.118236 GTCTGCATATAAGTTTTGTTTGAAGTC 57.882 33.333 0.00 0.00 0.00 3.01
4408 5962 8.850156 AGTCTGCATATAAGTTTTGTTTGAAGT 58.150 29.630 0.00 0.00 0.00 3.01
4418 5972 9.740710 AGTCCTTTTTAGTCTGCATATAAGTTT 57.259 29.630 0.00 0.00 0.00 2.66
4419 5973 9.167311 CAGTCCTTTTTAGTCTGCATATAAGTT 57.833 33.333 0.00 0.00 0.00 2.66
4420 5974 7.770897 CCAGTCCTTTTTAGTCTGCATATAAGT 59.229 37.037 0.00 0.00 0.00 2.24
4421 5975 7.987458 TCCAGTCCTTTTTAGTCTGCATATAAG 59.013 37.037 0.00 0.00 0.00 1.73
4422 5976 7.857456 TCCAGTCCTTTTTAGTCTGCATATAA 58.143 34.615 0.00 0.00 0.00 0.98
4423 5977 7.419057 CCTCCAGTCCTTTTTAGTCTGCATATA 60.419 40.741 0.00 0.00 0.00 0.86
4424 5978 6.313519 TCCAGTCCTTTTTAGTCTGCATAT 57.686 37.500 0.00 0.00 0.00 1.78
4425 5979 5.338381 CCTCCAGTCCTTTTTAGTCTGCATA 60.338 44.000 0.00 0.00 0.00 3.14
4426 5980 4.566488 CCTCCAGTCCTTTTTAGTCTGCAT 60.566 45.833 0.00 0.00 0.00 3.96
4427 5981 3.244561 CCTCCAGTCCTTTTTAGTCTGCA 60.245 47.826 0.00 0.00 0.00 4.41
4428 5982 3.339141 CCTCCAGTCCTTTTTAGTCTGC 58.661 50.000 0.00 0.00 0.00 4.26
4429 5983 3.244561 TGCCTCCAGTCCTTTTTAGTCTG 60.245 47.826 0.00 0.00 0.00 3.51
4430 5984 2.979678 TGCCTCCAGTCCTTTTTAGTCT 59.020 45.455 0.00 0.00 0.00 3.24
4431 5985 3.339141 CTGCCTCCAGTCCTTTTTAGTC 58.661 50.000 0.00 0.00 34.31 2.59
4432 5986 3.425162 CTGCCTCCAGTCCTTTTTAGT 57.575 47.619 0.00 0.00 34.31 2.24
4443 5997 1.745141 GCCAGAACATACTGCCTCCAG 60.745 57.143 0.00 0.00 44.80 3.86
4444 5998 0.253044 GCCAGAACATACTGCCTCCA 59.747 55.000 0.00 0.00 36.67 3.86
4445 5999 0.811616 CGCCAGAACATACTGCCTCC 60.812 60.000 0.00 0.00 36.67 4.30
4446 6000 0.175760 TCGCCAGAACATACTGCCTC 59.824 55.000 0.00 0.00 36.67 4.70
4447 6001 0.176680 CTCGCCAGAACATACTGCCT 59.823 55.000 0.00 0.00 36.67 4.75
4448 6002 0.175760 TCTCGCCAGAACATACTGCC 59.824 55.000 0.00 0.00 36.67 4.85
4449 6003 1.281899 GTCTCGCCAGAACATACTGC 58.718 55.000 0.00 0.00 36.67 4.40
4450 6004 1.550065 CGTCTCGCCAGAACATACTG 58.450 55.000 0.00 0.00 37.61 2.74
4456 6010 0.234884 CAAAACCGTCTCGCCAGAAC 59.765 55.000 0.00 0.00 0.00 3.01
4531 6085 4.403734 ACCGGAGCTCCTTTAATTTGAAA 58.596 39.130 29.73 0.00 0.00 2.69
4551 6105 1.600916 GACACTGTGGGGAGCAACC 60.601 63.158 13.09 0.00 38.08 3.77
4561 6115 0.732538 TAGCGCACGATGACACTGTG 60.733 55.000 11.47 6.19 36.70 3.66
4562 6116 0.732880 GTAGCGCACGATGACACTGT 60.733 55.000 11.47 0.00 0.00 3.55
4584 6138 3.068448 GCGTACTTTCAAAGGGGGAAAAA 59.932 43.478 1.31 0.00 34.15 1.94
4589 6147 1.472480 CATGCGTACTTTCAAAGGGGG 59.528 52.381 1.31 0.00 0.00 5.40
4590 6148 2.432444 TCATGCGTACTTTCAAAGGGG 58.568 47.619 1.31 0.00 0.00 4.79
4591 6149 3.242413 CGATCATGCGTACTTTCAAAGGG 60.242 47.826 1.31 0.00 0.00 3.95
4597 6155 2.353257 GCACGATCATGCGTACTTTC 57.647 50.000 0.00 0.00 43.59 2.62
4607 6165 0.248336 CAAATGCAGCGCACGATCAT 60.248 50.000 11.47 1.92 43.04 2.45
4610 6168 2.202518 GCAAATGCAGCGCACGAT 60.203 55.556 11.47 0.00 43.04 3.73
4616 6174 4.318903 TTCTTTTGAAATGCAAATGCAGCG 60.319 37.500 14.08 0.00 45.30 5.18
4617 6175 4.907582 GTTCTTTTGAAATGCAAATGCAGC 59.092 37.500 14.08 6.50 45.30 5.25
4618 6176 6.133392 CAGTTCTTTTGAAATGCAAATGCAG 58.867 36.000 14.08 0.00 45.43 4.41
4619 6177 6.050454 CAGTTCTTTTGAAATGCAAATGCA 57.950 33.333 10.94 10.94 45.43 3.96
4629 6192 5.125257 TGATGTGTGAGCAGTTCTTTTGAAA 59.875 36.000 0.00 0.00 40.53 2.69
4632 6195 4.534168 CTGATGTGTGAGCAGTTCTTTTG 58.466 43.478 0.00 0.00 33.07 2.44
4643 6206 3.368843 CCAAGGGAGTACTGATGTGTGAG 60.369 52.174 0.00 0.00 0.00 3.51
4676 6257 4.908601 ACAGTAATTCACACTCATGGGA 57.091 40.909 0.00 0.00 36.04 4.37
4680 6261 9.453572 AATTGTGATACAGTAATTCACACTCAT 57.546 29.630 14.19 5.68 46.78 2.90
4681 6262 8.846943 AATTGTGATACAGTAATTCACACTCA 57.153 30.769 14.19 3.93 46.78 3.41
4761 6342 4.437930 GCTAGCTTCATTTGTGATGTGTCC 60.438 45.833 7.70 0.00 0.00 4.02
4762 6343 4.437930 GGCTAGCTTCATTTGTGATGTGTC 60.438 45.833 15.72 0.00 0.00 3.67
4763 6344 3.441572 GGCTAGCTTCATTTGTGATGTGT 59.558 43.478 15.72 0.00 0.00 3.72
4764 6345 3.693085 AGGCTAGCTTCATTTGTGATGTG 59.307 43.478 15.72 0.00 0.00 3.21
4785 6366 1.521681 GATGGCGGGGAGACGAAAG 60.522 63.158 0.00 0.00 35.47 2.62
4786 6367 0.685131 TAGATGGCGGGGAGACGAAA 60.685 55.000 0.00 0.00 35.47 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.