Multiple sequence alignment - TraesCS5D01G262100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G262100 chr5D 100.000 5229 0 0 1 5229 368243982 368249210 0.000000e+00 9657.0
1 TraesCS5D01G262100 chr5D 89.606 1982 191 9 625 2602 368078658 368080628 0.000000e+00 2505.0
2 TraesCS5D01G262100 chr5D 89.169 1985 194 13 625 2602 368029529 368031499 0.000000e+00 2455.0
3 TraesCS5D01G262100 chr5D 86.550 2000 234 19 624 2619 368286074 368288042 0.000000e+00 2170.0
4 TraesCS5D01G262100 chr5D 87.218 266 26 5 182 444 368029092 368029352 3.960000e-76 296.0
5 TraesCS5D01G262100 chr5D 80.846 402 44 25 52 444 368078099 368078476 8.570000e-73 285.0
6 TraesCS5D01G262100 chr5D 83.471 121 7 8 52 159 367990279 367990399 3.330000e-17 100.0
7 TraesCS5D01G262100 chr5B 95.984 3735 102 17 604 4319 436162893 436166598 0.000000e+00 6023.0
8 TraesCS5D01G262100 chr5B 88.866 1985 197 13 625 2602 436152766 436154733 0.000000e+00 2420.0
9 TraesCS5D01G262100 chr5B 86.882 1982 233 14 624 2602 436209202 436211159 0.000000e+00 2194.0
10 TraesCS5D01G262100 chr5B 90.548 1661 139 5 625 2282 436096036 436097681 0.000000e+00 2182.0
11 TraesCS5D01G262100 chr5B 91.594 571 25 10 48 614 436162036 436162587 0.000000e+00 767.0
12 TraesCS5D01G262100 chr5B 80.191 838 121 26 3514 4329 435774311 435775125 2.100000e-163 586.0
13 TraesCS5D01G262100 chr5B 91.990 412 30 3 4365 4773 436166849 436167260 4.540000e-160 575.0
14 TraesCS5D01G262100 chr5B 87.740 416 16 13 4836 5229 436167286 436167688 2.220000e-123 453.0
15 TraesCS5D01G262100 chr5B 83.135 421 36 16 52 444 436152171 436152584 8.330000e-93 351.0
16 TraesCS5D01G262100 chr5B 86.312 263 29 4 184 444 436095596 436095853 3.990000e-71 279.0
17 TraesCS5D01G262100 chr5B 86.857 175 19 4 75 246 436077422 436077595 5.340000e-45 193.0
18 TraesCS5D01G262100 chr5B 83.824 136 9 7 52 174 435948593 435948728 3.310000e-22 117.0
19 TraesCS5D01G262100 chr5B 91.071 56 3 1 4302 4357 436166623 436166676 2.020000e-09 75.0
20 TraesCS5D01G262100 chr5A 88.844 1999 206 13 626 2619 470076591 470078577 0.000000e+00 2440.0
21 TraesCS5D01G262100 chr5A 86.143 1999 247 14 624 2619 470170471 470172442 0.000000e+00 2130.0
22 TraesCS5D01G262100 chr5A 80.263 836 124 20 3514 4329 469901109 469901923 4.510000e-165 592.0
23 TraesCS5D01G262100 chr5A 95.000 40 2 0 5024 5063 470105206 470105245 4.370000e-06 63.9
24 TraesCS5D01G262100 chr6D 87.660 235 24 5 2636 2867 440639726 440639494 8.630000e-68 268.0
25 TraesCS5D01G262100 chr4B 86.475 244 28 5 2625 2867 368106290 368106051 4.020000e-66 263.0
26 TraesCS5D01G262100 chr6A 85.600 250 31 5 2621 2867 588601131 588600884 1.870000e-64 257.0
27 TraesCS5D01G262100 chr4D 85.903 227 30 2 2642 2867 315080488 315080263 1.880000e-59 241.0
28 TraesCS5D01G262100 chr1D 84.400 250 32 7 2617 2864 12232117 12232361 6.770000e-59 239.0
29 TraesCS5D01G262100 chrUn 83.740 246 32 7 2625 2867 221305029 221304789 5.270000e-55 226.0
30 TraesCS5D01G262100 chrUn 83.740 246 32 7 2625 2867 245445442 245445202 5.270000e-55 226.0
31 TraesCS5D01G262100 chrUn 83.740 246 32 7 2625 2867 245457791 245457551 5.270000e-55 226.0
32 TraesCS5D01G262100 chr7B 100.000 29 0 0 4802 4830 428491521 428491549 3.000000e-03 54.7
33 TraesCS5D01G262100 chr6B 100.000 29 0 0 4802 4830 21137193 21137165 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G262100 chr5D 368243982 368249210 5228 False 9657.0 9657 100.0000 1 5229 1 chr5D.!!$F2 5228
1 TraesCS5D01G262100 chr5D 368286074 368288042 1968 False 2170.0 2170 86.5500 624 2619 1 chr5D.!!$F3 1995
2 TraesCS5D01G262100 chr5D 368078099 368080628 2529 False 1395.0 2505 85.2260 52 2602 2 chr5D.!!$F5 2550
3 TraesCS5D01G262100 chr5D 368029092 368031499 2407 False 1375.5 2455 88.1935 182 2602 2 chr5D.!!$F4 2420
4 TraesCS5D01G262100 chr5B 436209202 436211159 1957 False 2194.0 2194 86.8820 624 2602 1 chr5B.!!$F4 1978
5 TraesCS5D01G262100 chr5B 436162036 436167688 5652 False 1578.6 6023 91.6758 48 5229 5 chr5B.!!$F7 5181
6 TraesCS5D01G262100 chr5B 436152171 436154733 2562 False 1385.5 2420 86.0005 52 2602 2 chr5B.!!$F6 2550
7 TraesCS5D01G262100 chr5B 436095596 436097681 2085 False 1230.5 2182 88.4300 184 2282 2 chr5B.!!$F5 2098
8 TraesCS5D01G262100 chr5B 435774311 435775125 814 False 586.0 586 80.1910 3514 4329 1 chr5B.!!$F1 815
9 TraesCS5D01G262100 chr5A 470076591 470078577 1986 False 2440.0 2440 88.8440 626 2619 1 chr5A.!!$F2 1993
10 TraesCS5D01G262100 chr5A 470170471 470172442 1971 False 2130.0 2130 86.1430 624 2619 1 chr5A.!!$F4 1995
11 TraesCS5D01G262100 chr5A 469901109 469901923 814 False 592.0 592 80.2630 3514 4329 1 chr5A.!!$F1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 627 0.037697 TATGGTTGTCTTGTCGCGCT 60.038 50.0 5.56 0.0 0.00 5.92 F
619 961 0.174389 TGCCACATTTTGTTGTGCGT 59.826 45.0 0.00 0.0 44.53 5.24 F
1160 1553 1.462616 TGGCACAAAATCATCCGAGG 58.537 50.0 0.00 0.0 31.92 4.63 F
1818 2211 0.815734 CTGGTGGTTCTCGTCGGTAT 59.184 55.0 0.00 0.0 0.00 2.73 F
3496 3903 0.178981 AGGCAGCCAACAGTCAACAT 60.179 50.0 15.80 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 2092 1.522580 GCTGCCAGCTAGCTACCAC 60.523 63.158 18.86 7.69 38.45 4.16 R
1818 2211 2.371179 GCCATCCATCTCTCTGATCCAA 59.629 50.000 0.00 0.00 32.05 3.53 R
2927 3323 0.963355 GTGCCACCCAATTAAGCCGA 60.963 55.000 0.00 0.00 0.00 5.54 R
3582 3990 1.859302 TTGCAACCAAACCAGTTCCT 58.141 45.000 0.00 0.00 0.00 3.36 R
4378 5014 0.040204 AGTGCCTAGCCAAATTGCCT 59.960 50.000 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.830573 AGGCTTTCCTCTGTTGCC 57.169 55.556 0.00 0.00 38.72 4.52
24 25 3.267974 GGCTTTCCTCTGTTGCCG 58.732 61.111 0.00 0.00 33.96 5.69
25 26 2.563427 GCTTTCCTCTGTTGCCGC 59.437 61.111 0.00 0.00 0.00 6.53
26 27 2.863153 CTTTCCTCTGTTGCCGCG 59.137 61.111 0.00 0.00 0.00 6.46
27 28 3.314388 CTTTCCTCTGTTGCCGCGC 62.314 63.158 0.00 0.00 0.00 6.86
50 51 4.302509 TCCGCGCACCCTCGAAAA 62.303 61.111 8.75 0.00 0.00 2.29
189 194 0.321996 GAGGAGCTCCGTTGGTCTTT 59.678 55.000 26.95 6.05 42.08 2.52
192 197 1.578206 GAGCTCCGTTGGTCTTTGGC 61.578 60.000 0.87 0.00 0.00 4.52
255 270 3.860930 TTCCCGCCCTCAAGTTGCC 62.861 63.158 0.00 0.00 0.00 4.52
312 340 2.033407 CCGTCAATCGATTCATGTGAGC 60.033 50.000 7.92 0.00 42.86 4.26
331 360 2.094545 AGCATCATTTTGTTCCTTCGCC 60.095 45.455 0.00 0.00 0.00 5.54
369 398 1.123077 TGCCGGAATACAGCAGAGAT 58.877 50.000 5.05 0.00 31.65 2.75
433 462 3.595709 CACAAAAGGTGCAGCAAATTG 57.404 42.857 19.63 19.80 41.36 2.32
453 482 1.339610 GCTGTCTGTGAGACTGTGACT 59.660 52.381 11.00 0.00 45.27 3.41
463 492 2.230266 GAGACTGTGACTGGTCCTCTTC 59.770 54.545 5.87 0.00 33.39 2.87
589 619 9.975218 ACTATTTCTAATTGGTATGGTTGTCTT 57.025 29.630 0.00 0.00 0.00 3.01
591 621 8.650143 ATTTCTAATTGGTATGGTTGTCTTGT 57.350 30.769 0.00 0.00 0.00 3.16
594 624 1.803334 TGGTATGGTTGTCTTGTCGC 58.197 50.000 0.00 0.00 0.00 5.19
595 625 0.719465 GGTATGGTTGTCTTGTCGCG 59.281 55.000 0.00 0.00 0.00 5.87
596 626 0.094730 GTATGGTTGTCTTGTCGCGC 59.905 55.000 0.00 0.00 0.00 6.86
597 627 0.037697 TATGGTTGTCTTGTCGCGCT 60.038 50.000 5.56 0.00 0.00 5.92
598 628 1.568612 ATGGTTGTCTTGTCGCGCTG 61.569 55.000 5.56 0.00 0.00 5.18
599 629 1.954146 GGTTGTCTTGTCGCGCTGA 60.954 57.895 5.56 1.08 0.00 4.26
600 630 1.291877 GGTTGTCTTGTCGCGCTGAT 61.292 55.000 5.56 0.00 0.00 2.90
601 631 0.179240 GTTGTCTTGTCGCGCTGATG 60.179 55.000 5.56 0.00 0.00 3.07
602 632 1.900585 TTGTCTTGTCGCGCTGATGC 61.901 55.000 5.56 0.00 0.00 3.91
619 961 0.174389 TGCCACATTTTGTTGTGCGT 59.826 45.000 0.00 0.00 44.53 5.24
1016 1409 4.706962 GCTTACCATGGTTTCTGAGGAAAT 59.293 41.667 25.38 0.00 42.45 2.17
1044 1437 4.395542 CCAAAGAAGCAAAGAGATGAGGAG 59.604 45.833 0.00 0.00 0.00 3.69
1160 1553 1.462616 TGGCACAAAATCATCCGAGG 58.537 50.000 0.00 0.00 31.92 4.63
1340 1733 6.295462 CCTGATGATTTCCTTTGTGGTTCATT 60.295 38.462 0.00 0.00 34.08 2.57
1699 2092 5.351465 ACACTGTATTGGCTAATTGAAGACG 59.649 40.000 0.00 0.00 0.00 4.18
1773 2166 2.566833 TTGCACAGATACAACTGCCT 57.433 45.000 0.00 0.00 41.06 4.75
1818 2211 0.815734 CTGGTGGTTCTCGTCGGTAT 59.184 55.000 0.00 0.00 0.00 2.73
1885 2278 1.202330 CTGTCCTTCTCTGCCCAGAT 58.798 55.000 0.00 0.00 36.76 2.90
2026 2420 5.057149 GGGATAAGATCATACTGCAACGTT 58.943 41.667 0.00 0.00 0.00 3.99
2077 2471 3.786635 CTCGGGGAGAACTTCAATACTG 58.213 50.000 0.00 0.00 0.00 2.74
2549 2943 5.109210 TGTCTAAATGGAAGTCAGCATACG 58.891 41.667 0.00 0.00 0.00 3.06
2889 3285 3.517901 ACCCTTATAGCTGCTGTAACACA 59.482 43.478 13.43 0.00 0.00 3.72
2927 3323 4.431131 CAGCCAAGGCCCATCCGT 62.431 66.667 7.62 0.00 43.17 4.69
2945 3341 0.963355 GTCGGCTTAATTGGGTGGCA 60.963 55.000 0.00 0.00 0.00 4.92
2953 3349 0.469705 AATTGGGTGGCACAGAAGCA 60.470 50.000 20.82 0.00 41.80 3.91
2958 3354 0.610232 GGTGGCACAGAAGCAGGATT 60.610 55.000 20.82 0.00 41.80 3.01
3071 3467 9.883142 TTTTCCTTGAAACATGTCAAACTAATT 57.117 25.926 0.00 0.00 37.08 1.40
3206 3613 3.126001 TCATTTCGCTGGTTCTTGTCT 57.874 42.857 0.00 0.00 0.00 3.41
3215 3622 4.559704 CGCTGGTTCTTGTCTCCTATATCC 60.560 50.000 0.00 0.00 0.00 2.59
3229 3636 8.794553 GTCTCCTATATCCGTTTTAATCTCTCA 58.205 37.037 0.00 0.00 0.00 3.27
3238 3645 8.450578 TCCGTTTTAATCTCTCATGCAATAAT 57.549 30.769 0.00 0.00 0.00 1.28
3480 3887 3.012518 ACTATGTTCATTGTGCTGAGGC 58.987 45.455 0.00 0.00 39.26 4.70
3496 3903 0.178981 AGGCAGCCAACAGTCAACAT 60.179 50.000 15.80 0.00 0.00 2.71
3497 3904 0.675633 GGCAGCCAACAGTCAACATT 59.324 50.000 6.55 0.00 0.00 2.71
3498 3905 1.069049 GGCAGCCAACAGTCAACATTT 59.931 47.619 6.55 0.00 0.00 2.32
3530 3937 7.800155 TGAGAATCACAGTCAACATGTTTTA 57.200 32.000 8.77 0.00 42.56 1.52
3536 3943 7.326968 TCACAGTCAACATGTTTTACATCAA 57.673 32.000 8.77 0.00 36.53 2.57
3537 3944 7.192913 TCACAGTCAACATGTTTTACATCAAC 58.807 34.615 8.77 0.00 36.53 3.18
3582 3990 5.477637 GGTTTGTGTAGGTGCCCTAAATTTA 59.522 40.000 2.86 0.00 37.91 1.40
3606 4014 3.625649 ACTGGTTTGGTTGCAAAACAT 57.374 38.095 13.07 0.00 47.00 2.71
3748 4158 1.945662 GCGTTTGCTGGCACACTTG 60.946 57.895 9.63 0.00 38.39 3.16
3852 4263 7.981102 ACAGAGAGGTACTTAAAAATGTTCC 57.019 36.000 0.00 0.00 41.55 3.62
3927 4338 5.923204 ACACTCAGATTAGGAATCATGGAC 58.077 41.667 0.00 0.00 40.42 4.02
3958 4369 1.967066 ACGCCAAATTTTCCATGTCCA 59.033 42.857 0.00 0.00 0.00 4.02
3959 4370 2.366916 ACGCCAAATTTTCCATGTCCAA 59.633 40.909 0.00 0.00 0.00 3.53
3987 4401 7.024340 TCTGATTTGAGCTTTGAATATGAGC 57.976 36.000 0.00 0.00 36.68 4.26
3988 4402 6.600427 TCTGATTTGAGCTTTGAATATGAGCA 59.400 34.615 0.00 0.00 38.85 4.26
3997 4411 2.905075 TGAATATGAGCAACGACCTGG 58.095 47.619 0.00 0.00 0.00 4.45
4030 4447 6.428159 GTCTCTGCACCTTTAATTCTTTGAGA 59.572 38.462 0.00 0.00 0.00 3.27
4046 4463 6.924111 TCTTTGAGAAAAAGAAAACAGTGCT 58.076 32.000 0.00 0.00 33.72 4.40
4082 4507 3.252701 TCGAACGGCTATTCTACCTGATC 59.747 47.826 0.00 0.00 0.00 2.92
4119 4544 5.779771 ACCATTGTCCTGTATTTGAACCATT 59.220 36.000 0.00 0.00 0.00 3.16
4171 4596 3.863142 AATGCTGGCATTTCTTCTCAC 57.137 42.857 14.14 0.00 43.32 3.51
4185 4610 0.174389 TCTCACAATCTCAGCGAGGC 59.826 55.000 5.87 0.00 0.00 4.70
4255 4683 0.590195 GCTCACTCAGGCTGTTGTTG 59.410 55.000 15.27 7.62 0.00 3.33
4281 4710 3.746940 CTGTTTCTTTTTACCCCCGAGA 58.253 45.455 0.00 0.00 0.00 4.04
4293 4722 0.175989 CCCCGAGAGACTGTTTAGCC 59.824 60.000 0.00 0.00 0.00 3.93
4357 4828 3.010420 GCTGTTAGATGGAGGTTGAACC 58.990 50.000 6.16 6.16 38.99 3.62
4358 4829 3.610911 CTGTTAGATGGAGGTTGAACCC 58.389 50.000 11.41 2.41 39.75 4.11
4359 4830 2.307686 TGTTAGATGGAGGTTGAACCCC 59.692 50.000 11.41 12.40 39.75 4.95
4362 4833 1.355720 AGATGGAGGTTGAACCCCAAG 59.644 52.381 22.54 0.00 40.39 3.61
4376 5012 3.343972 CAAGCCGTGACTTGGTGG 58.656 61.111 0.00 0.00 42.73 4.61
4413 5049 4.040755 AGGCACTCTGGTTAGTGGAATAT 58.959 43.478 6.17 0.00 45.75 1.28
4430 5066 7.160457 TGGAATATATGTCTTCCCATTCCAA 57.840 36.000 10.57 0.00 45.09 3.53
4457 5093 8.752005 AATACATAACCAAATCTATGTGCTGT 57.248 30.769 5.24 0.00 38.78 4.40
4459 5095 6.855836 ACATAACCAAATCTATGTGCTGTTG 58.144 36.000 0.00 0.00 37.36 3.33
4474 5110 2.726241 GCTGTTGCGTTTTTCTCCATTC 59.274 45.455 0.00 0.00 0.00 2.67
4482 5118 6.616947 TGCGTTTTTCTCCATTCGAATTTAT 58.383 32.000 8.21 0.00 0.00 1.40
4486 5122 4.811555 TTCTCCATTCGAATTTATGGCG 57.188 40.909 8.21 3.46 40.90 5.69
4500 5137 5.744666 TTTATGGCGCTTATTTAGTCCAC 57.255 39.130 7.64 0.00 33.53 4.02
4526 5164 7.213706 CGTGACGTGATTAACATATTGTTTGAC 59.786 37.037 0.00 0.00 41.45 3.18
4617 5255 4.154347 GGGCTCCCTGCTCTCACG 62.154 72.222 0.00 0.00 39.58 4.35
4669 5307 1.227999 AAATGGACAGCGTCGTGTGG 61.228 55.000 5.40 0.00 32.65 4.17
4681 5319 0.963962 TCGTGTGGTAGACCCTTGAC 59.036 55.000 0.00 0.00 34.29 3.18
4685 5323 0.903236 GTGGTAGACCCTTGACTCCC 59.097 60.000 0.00 0.00 34.29 4.30
4688 5326 1.652947 GTAGACCCTTGACTCCCCAA 58.347 55.000 0.00 0.00 0.00 4.12
4690 5328 0.995024 AGACCCTTGACTCCCCAATG 59.005 55.000 0.00 0.00 0.00 2.82
4705 5343 0.457166 CAATGCACATTCCGCTGGTG 60.457 55.000 0.00 0.00 35.68 4.17
4715 5353 2.671177 CCGCTGGTGCTTCAACTCG 61.671 63.158 0.00 0.00 36.97 4.18
4720 5358 2.719798 CTGGTGCTTCAACTCGTTTTG 58.280 47.619 0.00 0.00 0.00 2.44
4722 5360 1.112459 GTGCTTCAACTCGTTTTGCG 58.888 50.000 0.00 0.00 43.01 4.85
4731 5369 1.662122 ACTCGTTTTGCGACGTTCTTT 59.338 42.857 0.00 0.00 45.68 2.52
4769 5407 1.310216 ATTTCGGCTGCGGGTAAACC 61.310 55.000 7.38 0.00 0.00 3.27
4781 5419 1.403323 GGGTAAACCGTACTCTCTCCG 59.597 57.143 0.00 0.00 36.71 4.63
4783 5421 2.096657 GGTAAACCGTACTCTCTCCGTC 59.903 54.545 0.00 0.00 0.00 4.79
4785 5423 1.451067 AACCGTACTCTCTCCGTCTG 58.549 55.000 0.00 0.00 0.00 3.51
4786 5424 0.392729 ACCGTACTCTCTCCGTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
4787 5425 0.107800 CCGTACTCTCTCCGTCTGGA 60.108 60.000 0.00 0.00 43.88 3.86
4788 5426 1.678123 CCGTACTCTCTCCGTCTGGAA 60.678 57.143 0.00 0.00 45.87 3.53
4789 5427 2.082231 CGTACTCTCTCCGTCTGGAAA 58.918 52.381 0.00 0.00 45.87 3.13
4790 5428 2.486982 CGTACTCTCTCCGTCTGGAAAA 59.513 50.000 0.00 0.00 45.87 2.29
4791 5429 3.426426 CGTACTCTCTCCGTCTGGAAAAG 60.426 52.174 0.00 0.00 45.87 2.27
4792 5430 1.273886 ACTCTCTCCGTCTGGAAAAGC 59.726 52.381 0.00 0.00 45.87 3.51
4793 5431 1.548269 CTCTCTCCGTCTGGAAAAGCT 59.452 52.381 0.00 0.00 45.87 3.74
4794 5432 1.971357 TCTCTCCGTCTGGAAAAGCTT 59.029 47.619 0.00 0.00 45.87 3.74
4795 5433 2.072298 CTCTCCGTCTGGAAAAGCTTG 58.928 52.381 0.00 0.00 45.87 4.01
4796 5434 1.416401 TCTCCGTCTGGAAAAGCTTGT 59.584 47.619 0.00 0.00 45.87 3.16
4797 5435 1.801178 CTCCGTCTGGAAAAGCTTGTC 59.199 52.381 8.23 8.23 45.87 3.18
4798 5436 0.875059 CCGTCTGGAAAAGCTTGTCC 59.125 55.000 26.56 26.56 37.49 4.02
4799 5437 0.875059 CGTCTGGAAAAGCTTGTCCC 59.125 55.000 29.33 15.25 32.48 4.46
4800 5438 1.813862 CGTCTGGAAAAGCTTGTCCCA 60.814 52.381 29.33 20.18 32.48 4.37
4801 5439 2.306847 GTCTGGAAAAGCTTGTCCCAA 58.693 47.619 29.33 16.45 32.48 4.12
4802 5440 2.693074 GTCTGGAAAAGCTTGTCCCAAA 59.307 45.455 29.33 14.10 32.48 3.28
4803 5441 2.693074 TCTGGAAAAGCTTGTCCCAAAC 59.307 45.455 29.33 7.92 32.48 2.93
4804 5442 2.695147 CTGGAAAAGCTTGTCCCAAACT 59.305 45.455 29.33 0.00 32.48 2.66
4805 5443 3.103742 TGGAAAAGCTTGTCCCAAACTT 58.896 40.909 29.33 3.55 32.48 2.66
4806 5444 3.118811 TGGAAAAGCTTGTCCCAAACTTG 60.119 43.478 29.33 0.00 32.48 3.16
4820 5458 5.741388 CCAAACTTGGTGCTAGATACATC 57.259 43.478 0.00 0.00 43.43 3.06
4821 5459 4.576463 CCAAACTTGGTGCTAGATACATCC 59.424 45.833 0.00 0.00 43.43 3.51
4822 5460 5.185454 CAAACTTGGTGCTAGATACATCCA 58.815 41.667 0.00 0.00 0.00 3.41
4823 5461 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
4824 5462 6.747414 AACTTGGTGCTAGATACATCCATA 57.253 37.500 0.00 0.00 0.00 2.74
4825 5463 6.942163 ACTTGGTGCTAGATACATCCATAT 57.058 37.500 0.00 0.00 0.00 1.78
4826 5464 6.705302 ACTTGGTGCTAGATACATCCATATG 58.295 40.000 0.00 0.00 39.17 1.78
4827 5465 6.498303 ACTTGGTGCTAGATACATCCATATGA 59.502 38.462 3.65 0.00 36.54 2.15
4828 5466 6.535963 TGGTGCTAGATACATCCATATGAG 57.464 41.667 3.65 0.00 36.54 2.90
4829 5467 5.423290 TGGTGCTAGATACATCCATATGAGG 59.577 44.000 3.65 0.00 36.54 3.86
4830 5468 5.423610 GGTGCTAGATACATCCATATGAGGT 59.576 44.000 3.65 1.84 41.66 3.85
4831 5469 6.070538 GGTGCTAGATACATCCATATGAGGTT 60.071 42.308 3.65 0.00 39.14 3.50
4832 5470 7.390027 GTGCTAGATACATCCATATGAGGTTT 58.610 38.462 3.65 0.00 39.14 3.27
4833 5471 8.531982 GTGCTAGATACATCCATATGAGGTTTA 58.468 37.037 3.65 0.00 39.14 2.01
4834 5472 8.531982 TGCTAGATACATCCATATGAGGTTTAC 58.468 37.037 3.65 0.00 39.14 2.01
4950 5597 2.347731 GAAGTTGGTTCTCCCGTGATC 58.652 52.381 0.00 0.00 35.15 2.92
4957 5604 1.532604 TTCTCCCGTGATCAGCGTGT 61.533 55.000 13.90 0.00 0.00 4.49
4961 5608 0.802222 CCCGTGATCAGCGTGTACTG 60.802 60.000 13.90 0.00 39.12 2.74
4962 5609 0.109272 CCGTGATCAGCGTGTACTGT 60.109 55.000 13.90 0.00 38.84 3.55
4964 5611 1.401018 CGTGATCAGCGTGTACTGTGA 60.401 52.381 0.00 0.00 38.84 3.58
4965 5612 2.732282 CGTGATCAGCGTGTACTGTGAT 60.732 50.000 0.00 0.00 38.84 3.06
4967 5614 4.421058 GTGATCAGCGTGTACTGTGATTA 58.579 43.478 0.00 0.00 38.84 1.75
4968 5615 5.043903 GTGATCAGCGTGTACTGTGATTAT 58.956 41.667 0.00 0.00 38.84 1.28
4969 5616 5.174035 GTGATCAGCGTGTACTGTGATTATC 59.826 44.000 0.00 0.00 38.84 1.75
5029 5685 0.179153 CTGCTCTTCGATCGTGCTCA 60.179 55.000 15.94 7.24 0.00 4.26
5056 5712 4.025396 GCTCACCATCTGATTCATACAACG 60.025 45.833 0.00 0.00 0.00 4.10
5057 5713 5.337578 TCACCATCTGATTCATACAACGA 57.662 39.130 0.00 0.00 0.00 3.85
5151 5811 6.203723 GTCAAGGCATCACACTCTATTAATCC 59.796 42.308 0.00 0.00 0.00 3.01
5154 5814 5.370880 AGGCATCACACTCTATTAATCCCTT 59.629 40.000 0.00 0.00 0.00 3.95
5157 5817 6.688922 GCATCACACTCTATTAATCCCTTCCA 60.689 42.308 0.00 0.00 0.00 3.53
5180 5840 4.794248 TTCTCATTTTGTGTCAGTGTCG 57.206 40.909 0.00 0.00 0.00 4.35
5181 5841 4.053469 TCTCATTTTGTGTCAGTGTCGA 57.947 40.909 0.00 0.00 0.00 4.20
5183 5843 4.873259 TCTCATTTTGTGTCAGTGTCGAAA 59.127 37.500 0.00 0.00 0.00 3.46
5184 5844 4.904116 TCATTTTGTGTCAGTGTCGAAAC 58.096 39.130 0.00 0.00 0.00 2.78
5185 5845 4.634004 TCATTTTGTGTCAGTGTCGAAACT 59.366 37.500 1.19 1.19 0.00 2.66
5186 5846 5.813157 TCATTTTGTGTCAGTGTCGAAACTA 59.187 36.000 8.22 0.00 0.00 2.24
5187 5847 6.481976 TCATTTTGTGTCAGTGTCGAAACTAT 59.518 34.615 8.22 0.00 0.00 2.12
5188 5848 7.654116 TCATTTTGTGTCAGTGTCGAAACTATA 59.346 33.333 8.22 0.00 0.00 1.31
5189 5849 7.402811 TTTTGTGTCAGTGTCGAAACTATAG 57.597 36.000 8.22 0.00 0.00 1.31
5190 5850 5.952526 TGTGTCAGTGTCGAAACTATAGA 57.047 39.130 8.22 0.00 0.00 1.98
5191 5851 5.696822 TGTGTCAGTGTCGAAACTATAGAC 58.303 41.667 8.22 12.30 35.61 2.59
5192 5852 5.094134 GTGTCAGTGTCGAAACTATAGACC 58.906 45.833 17.53 8.78 34.24 3.85
5193 5853 4.157289 TGTCAGTGTCGAAACTATAGACCC 59.843 45.833 17.53 0.62 34.24 4.46
5194 5854 3.376234 TCAGTGTCGAAACTATAGACCCG 59.624 47.826 8.22 6.43 34.24 5.28
5195 5855 3.376234 CAGTGTCGAAACTATAGACCCGA 59.624 47.826 8.22 8.63 34.24 5.14
5196 5856 4.012374 AGTGTCGAAACTATAGACCCGAA 58.988 43.478 6.42 1.42 34.24 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.982744 GCGGCAACAGAGGAAAGCC 61.983 63.158 0.00 0.00 41.86 4.35
9 10 2.863153 CGCGGCAACAGAGGAAAG 59.137 61.111 0.00 0.00 0.00 2.62
10 11 3.353836 GCGCGGCAACAGAGGAAA 61.354 61.111 8.83 0.00 0.00 3.13
33 34 3.811118 TTTTTCGAGGGTGCGCGGA 62.811 57.895 8.83 0.00 0.00 5.54
34 35 3.350612 TTTTTCGAGGGTGCGCGG 61.351 61.111 8.83 0.00 0.00 6.46
50 51 4.474651 GGGAAATGGAGATTGGGGATTTTT 59.525 41.667 0.00 0.00 0.00 1.94
170 175 0.321996 AAAGACCAACGGAGCTCCTC 59.678 55.000 29.73 19.62 0.00 3.71
171 176 0.035458 CAAAGACCAACGGAGCTCCT 59.965 55.000 29.73 14.52 0.00 3.69
174 179 1.600916 GCCAAAGACCAACGGAGCT 60.601 57.895 0.00 0.00 0.00 4.09
175 180 2.954611 GCCAAAGACCAACGGAGC 59.045 61.111 0.00 0.00 0.00 4.70
176 181 1.566018 GACGCCAAAGACCAACGGAG 61.566 60.000 0.00 0.00 0.00 4.63
177 182 1.595929 GACGCCAAAGACCAACGGA 60.596 57.895 0.00 0.00 0.00 4.69
179 184 0.041312 CAAGACGCCAAAGACCAACG 60.041 55.000 0.00 0.00 0.00 4.10
180 185 0.317854 GCAAGACGCCAAAGACCAAC 60.318 55.000 0.00 0.00 32.94 3.77
182 187 1.153066 TGCAAGACGCCAAAGACCA 60.153 52.632 0.00 0.00 41.33 4.02
183 188 1.576421 CTGCAAGACGCCAAAGACC 59.424 57.895 0.00 0.00 41.33 3.85
189 194 3.611674 TCGACCTGCAAGACGCCA 61.612 61.111 2.20 0.00 41.33 5.69
312 340 3.057315 ACAGGCGAAGGAACAAAATGATG 60.057 43.478 0.00 0.00 0.00 3.07
331 360 0.532862 ACCGTGGAACAGCAAGACAG 60.533 55.000 0.00 0.00 41.80 3.51
453 482 0.965866 ATCAGCGACGAAGAGGACCA 60.966 55.000 0.00 0.00 0.00 4.02
463 492 0.235665 ACAAAACTGCATCAGCGACG 59.764 50.000 0.00 0.00 46.23 5.12
544 573 6.839124 ATAGTTTGCATTGAGACATTGGAA 57.161 33.333 0.00 0.00 0.00 3.53
574 604 2.147958 GCGACAAGACAACCATACCAA 58.852 47.619 0.00 0.00 0.00 3.67
589 619 4.678499 TGTGGCATCAGCGCGACA 62.678 61.111 12.10 0.00 46.56 4.35
591 621 1.585267 AAAATGTGGCATCAGCGCGA 61.585 50.000 12.10 2.54 43.41 5.87
594 624 1.722464 CAACAAAATGTGGCATCAGCG 59.278 47.619 0.00 0.00 43.41 5.18
595 625 2.477375 CACAACAAAATGTGGCATCAGC 59.523 45.455 0.00 0.00 45.47 4.26
619 961 3.446799 AGTACGACACGCTAAAACACAA 58.553 40.909 0.00 0.00 0.00 3.33
1016 1409 5.593909 TCATCTCTTTGCTTCTTTGGTTTGA 59.406 36.000 0.00 0.00 0.00 2.69
1044 1437 4.576463 CCTGGGAGACAGTTTATAATGCAC 59.424 45.833 0.00 0.00 46.06 4.57
1160 1553 1.880027 GTGATGTGACAAACTGGGGAC 59.120 52.381 0.00 0.00 0.00 4.46
1340 1733 5.125417 GTGTATAAGCAAAGAAGCCCATTGA 59.875 40.000 0.00 0.00 34.23 2.57
1699 2092 1.522580 GCTGCCAGCTAGCTACCAC 60.523 63.158 18.86 7.69 38.45 4.16
1773 2166 5.288804 GCAAAATCTTCAGGTTTAGTTGCA 58.711 37.500 0.00 0.00 0.00 4.08
1818 2211 2.371179 GCCATCCATCTCTCTGATCCAA 59.629 50.000 0.00 0.00 32.05 3.53
2026 2420 2.371841 AGGAATATAGGTTGCCATCGCA 59.628 45.455 0.00 0.00 45.49 5.10
2077 2471 3.503748 AGCTTTGCCATCTTACACAGTTC 59.496 43.478 0.00 0.00 0.00 3.01
2566 2962 7.665145 TCAGATGATTAACTGACCATTCAAACA 59.335 33.333 0.00 0.00 38.08 2.83
2608 3004 9.152595 CAGAGGGAGTACTTAATTAAAGAACAC 57.847 37.037 0.00 0.00 38.67 3.32
2677 3073 9.838339 ACATTTTGTTGGTAAAATTAATGGTCA 57.162 25.926 0.00 0.00 37.97 4.02
2848 3244 1.001706 GTGTTCTCCCTCCGTTTTTGC 60.002 52.381 0.00 0.00 0.00 3.68
2873 3269 4.478206 AGACATGTGTTACAGCAGCTAT 57.522 40.909 1.15 0.00 0.00 2.97
2927 3323 0.963355 GTGCCACCCAATTAAGCCGA 60.963 55.000 0.00 0.00 0.00 5.54
2953 3349 6.650390 ACGAGCATTTAAATTTTGCAAATCCT 59.350 30.769 13.65 2.79 38.84 3.24
2958 3354 8.526218 TTCATACGAGCATTTAAATTTTGCAA 57.474 26.923 14.13 0.00 38.84 4.08
3071 3467 4.617530 CGTAGCCTGCAGACAAGTTAACTA 60.618 45.833 17.39 0.00 0.00 2.24
3073 3469 2.412089 CGTAGCCTGCAGACAAGTTAAC 59.588 50.000 17.39 0.00 0.00 2.01
3131 3527 7.501844 ACTTTTACCTGATCTTCTATAGCACC 58.498 38.462 0.00 0.00 0.00 5.01
3188 3584 2.039084 AGGAGACAAGAACCAGCGAAAT 59.961 45.455 0.00 0.00 0.00 2.17
3206 3613 8.035394 GCATGAGAGATTAAAACGGATATAGGA 58.965 37.037 0.00 0.00 0.00 2.94
3418 3825 7.968405 CACAGTAAGCAAACAAAGAACTAAAGT 59.032 33.333 0.00 0.00 0.00 2.66
3582 3990 1.859302 TTGCAACCAAACCAGTTCCT 58.141 45.000 0.00 0.00 0.00 3.36
3606 4014 8.966868 AGTTAAGAAAGGAATCAACACTTGAAA 58.033 29.630 0.00 0.00 43.95 2.69
3697 4106 6.875726 TGGAACTGTAGATAATAGCATGCATC 59.124 38.462 21.98 13.80 0.00 3.91
3748 4158 5.581126 TGCTCAATTAACCATCATTCACC 57.419 39.130 0.00 0.00 0.00 4.02
3852 4263 7.326305 GTCTGCTATATAAAGGTGTACGATGTG 59.674 40.741 0.00 0.00 0.00 3.21
3896 4307 8.772250 TGATTCCTAATCTGAGTGTTCCTTAAT 58.228 33.333 1.70 0.00 38.72 1.40
3907 4318 6.416631 TCAGTCCATGATTCCTAATCTGAG 57.583 41.667 0.00 0.00 38.72 3.35
3927 4338 6.201806 TGGAAAATTTGGCGTTTAACAATCAG 59.798 34.615 0.00 0.00 0.00 2.90
3987 4401 3.463944 AGACAGTTTAACCAGGTCGTTG 58.536 45.455 0.00 0.00 33.84 4.10
3988 4402 3.387050 AGAGACAGTTTAACCAGGTCGTT 59.613 43.478 0.00 0.00 33.84 3.85
3997 4411 6.613755 TTAAAGGTGCAGAGACAGTTTAAC 57.386 37.500 0.00 0.00 0.00 2.01
4030 4447 5.723295 ACATGACAGCACTGTTTTCTTTTT 58.277 33.333 4.52 0.00 45.05 1.94
4082 4507 5.122869 CAGGACAATGGTACTTTCATCACAG 59.877 44.000 0.00 0.00 35.42 3.66
4119 4544 2.736721 GCACGCTTCTGAAACATGAGTA 59.263 45.455 0.00 0.00 0.00 2.59
4171 4596 2.496341 TCGGCCTCGCTGAGATTG 59.504 61.111 0.00 0.00 39.19 2.67
4185 4610 4.872124 TCAAAGTCTTCACATCATCATCGG 59.128 41.667 0.00 0.00 0.00 4.18
4255 4683 3.551454 GGGGGTAAAAAGAAACAGCGTTC 60.551 47.826 0.00 0.00 0.00 3.95
4281 4710 1.574263 GAGAGGGGGCTAAACAGTCT 58.426 55.000 0.00 0.00 0.00 3.24
4359 4830 2.908073 GCCACCAAGTCACGGCTTG 61.908 63.158 4.37 4.37 43.88 4.01
4362 4833 3.357079 CTGCCACCAAGTCACGGC 61.357 66.667 0.00 0.00 45.11 5.68
4376 5012 1.142531 GCCTAGCCAAATTGCCTGC 59.857 57.895 0.00 0.00 0.00 4.85
4378 5014 0.040204 AGTGCCTAGCCAAATTGCCT 59.960 50.000 0.00 0.00 0.00 4.75
4413 5049 8.837099 ATGTATTTTTGGAATGGGAAGACATA 57.163 30.769 0.00 0.00 32.36 2.29
4454 5090 2.973224 CGAATGGAGAAAAACGCAACAG 59.027 45.455 0.00 0.00 0.00 3.16
4457 5093 3.972950 TTCGAATGGAGAAAAACGCAA 57.027 38.095 0.00 0.00 0.00 4.85
4459 5095 6.020678 CCATAAATTCGAATGGAGAAAAACGC 60.021 38.462 12.25 0.00 44.62 4.84
4474 5110 6.077838 GGACTAAATAAGCGCCATAAATTCG 58.922 40.000 2.29 0.00 0.00 3.34
4482 5118 1.066716 ACGTGGACTAAATAAGCGCCA 60.067 47.619 2.29 0.00 32.23 5.69
4486 5122 3.248266 ACGTCACGTGGACTAAATAAGC 58.752 45.455 17.00 0.00 44.68 3.09
4500 5137 7.213706 GTCAAACAATATGTTAATCACGTCACG 59.786 37.037 0.00 0.00 40.14 4.35
4526 5164 5.686159 AGCAAATTCTTCAGTGTCTCAAG 57.314 39.130 0.00 0.00 0.00 3.02
4584 5222 1.599047 CCCAGGACGCTGTCAAGAT 59.401 57.895 10.14 0.00 33.68 2.40
4587 5225 3.240134 GAGCCCAGGACGCTGTCAA 62.240 63.158 10.14 0.00 36.48 3.18
4617 5255 1.085893 GAAAAGAGGCTCAGCAGCTC 58.914 55.000 18.26 0.00 46.03 4.09
4632 5270 0.319083 TTACAGCGAGGAGGCGAAAA 59.681 50.000 0.00 0.00 38.18 2.29
4634 5272 0.535335 ATTTACAGCGAGGAGGCGAA 59.465 50.000 0.00 0.00 38.18 4.70
4659 5297 2.126189 GGGTCTACCACACGACGC 60.126 66.667 0.81 0.00 39.85 5.19
4669 5307 1.652947 TTGGGGAGTCAAGGGTCTAC 58.347 55.000 0.00 0.00 0.00 2.59
4681 5319 2.008268 GCGGAATGTGCATTGGGGAG 62.008 60.000 1.77 0.00 0.00 4.30
4685 5323 1.140161 CCAGCGGAATGTGCATTGG 59.860 57.895 1.77 0.00 33.85 3.16
4688 5326 3.594568 CACCAGCGGAATGTGCAT 58.405 55.556 0.00 0.00 33.85 3.96
4715 5353 2.511879 ACACAAAGAACGTCGCAAAAC 58.488 42.857 0.00 0.00 0.00 2.43
4720 5358 1.796459 ACCATACACAAAGAACGTCGC 59.204 47.619 0.00 0.00 0.00 5.19
4722 5360 4.151867 GGAAGACCATACACAAAGAACGTC 59.848 45.833 0.00 0.00 35.97 4.34
4769 5407 1.735386 TTCCAGACGGAGAGAGTACG 58.265 55.000 0.00 0.00 44.10 3.67
4770 5408 3.673866 GCTTTTCCAGACGGAGAGAGTAC 60.674 52.174 0.00 0.00 44.10 2.73
4771 5409 2.492484 GCTTTTCCAGACGGAGAGAGTA 59.508 50.000 0.00 0.00 44.10 2.59
4772 5410 1.273886 GCTTTTCCAGACGGAGAGAGT 59.726 52.381 0.00 0.00 44.10 3.24
4773 5411 1.548269 AGCTTTTCCAGACGGAGAGAG 59.452 52.381 0.00 0.00 44.10 3.20
4775 5413 2.072298 CAAGCTTTTCCAGACGGAGAG 58.928 52.381 0.00 0.00 44.10 3.20
4777 5415 1.801178 GACAAGCTTTTCCAGACGGAG 59.199 52.381 0.00 0.00 44.10 4.63
4778 5416 1.542547 GGACAAGCTTTTCCAGACGGA 60.543 52.381 23.89 0.00 40.60 4.69
4781 5419 1.981256 TGGGACAAGCTTTTCCAGAC 58.019 50.000 28.35 14.71 31.92 3.51
4799 5437 5.185454 TGGATGTATCTAGCACCAAGTTTG 58.815 41.667 0.00 0.00 0.00 2.93
4800 5438 5.435686 TGGATGTATCTAGCACCAAGTTT 57.564 39.130 0.00 0.00 0.00 2.66
4801 5439 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
4802 5440 6.498303 TCATATGGATGTATCTAGCACCAAGT 59.502 38.462 2.13 0.00 34.41 3.16
4803 5441 6.939622 TCATATGGATGTATCTAGCACCAAG 58.060 40.000 2.13 0.00 34.41 3.61
4804 5442 6.070596 CCTCATATGGATGTATCTAGCACCAA 60.071 42.308 2.13 0.00 34.41 3.67
4805 5443 5.423290 CCTCATATGGATGTATCTAGCACCA 59.577 44.000 2.13 0.00 34.41 4.17
4806 5444 5.423610 ACCTCATATGGATGTATCTAGCACC 59.576 44.000 2.13 0.00 34.41 5.01
4807 5445 6.537453 ACCTCATATGGATGTATCTAGCAC 57.463 41.667 2.13 0.00 34.41 4.40
4808 5446 7.559335 AAACCTCATATGGATGTATCTAGCA 57.441 36.000 2.13 0.00 34.41 3.49
4809 5447 8.754080 AGTAAACCTCATATGGATGTATCTAGC 58.246 37.037 2.13 0.00 34.41 3.42
4819 5457 9.670442 AGGTCTAAATAGTAAACCTCATATGGA 57.330 33.333 2.13 0.00 35.42 3.41
4825 5463 9.931698 TGAGATAGGTCTAAATAGTAAACCTCA 57.068 33.333 3.35 0.00 40.69 3.86
4840 5478 7.861629 TCCAAAATACATGTTGAGATAGGTCT 58.138 34.615 2.30 0.00 37.42 3.85
4842 5480 8.877864 TTTCCAAAATACATGTTGAGATAGGT 57.122 30.769 2.30 0.00 0.00 3.08
4950 5597 2.789339 CGGATAATCACAGTACACGCTG 59.211 50.000 0.00 0.00 41.92 5.18
4957 5604 2.803133 GCAGCTGCGGATAATCACAGTA 60.803 50.000 25.23 0.00 32.65 2.74
4961 5608 1.835483 CGGCAGCTGCGGATAATCAC 61.835 60.000 35.37 16.71 43.02 3.06
4962 5609 1.595109 CGGCAGCTGCGGATAATCA 60.595 57.895 35.37 0.00 43.02 2.57
4964 5611 2.974698 GCGGCAGCTGCGGATAAT 60.975 61.111 40.48 0.00 43.02 1.28
5005 5657 4.317529 GATCGAAGAGCAGAGGCG 57.682 61.111 0.00 0.00 45.47 5.52
5029 5685 4.708576 ATGAATCAGATGGTGAGCAGAT 57.291 40.909 0.00 0.00 39.07 2.90
5056 5712 3.321497 GCCGTATGAATCAGATGGACTC 58.679 50.000 19.32 0.00 34.01 3.36
5057 5713 2.288457 CGCCGTATGAATCAGATGGACT 60.288 50.000 19.32 0.00 34.01 3.85
5115 5775 3.160872 GCCTTGACCTTGGCTAGTC 57.839 57.895 0.00 0.00 45.26 2.59
5151 5811 6.088016 TGACACAAAATGAGAATTGGAAGG 57.912 37.500 0.00 0.00 0.00 3.46
5154 5814 5.593909 ACACTGACACAAAATGAGAATTGGA 59.406 36.000 0.00 0.00 0.00 3.53
5157 5817 5.527214 TCGACACTGACACAAAATGAGAATT 59.473 36.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.