Multiple sequence alignment - TraesCS5D01G261100

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G261100 chr5D 100.000 8307 0 0 1 8307 367442847 367434541 0.000000e+00 15341.0
1 TraesCS5D01G261100 chr5D 91.344 774 64 3 1995 2766 543698369 543697597 0.000000e+00 1055.0
2 TraesCS5D01G261100 chr5D 97.545 448 10 1 1077 1523 367590488 367590041 0.000000e+00 765.0
3 TraesCS5D01G261100 chr5D 96.875 416 10 3 3707 4120 445486885 445486471 0.000000e+00 693.0
4 TraesCS5D01G261100 chr5D 96.009 426 10 3 3704 4129 397882364 397882782 0.000000e+00 686.0
5 TraesCS5D01G261100 chr5D 87.336 608 63 6 5617 6216 367588772 367588171 0.000000e+00 684.0
6 TraesCS5D01G261100 chr5D 81.296 679 74 24 6305 6974 367588000 367587366 1.240000e-137 501.0
7 TraesCS5D01G261100 chr5D 85.385 260 29 7 1714 1967 367589034 367588778 2.300000e-65 261.0
8 TraesCS5D01G261100 chr5D 86.275 204 24 3 638 839 418945933 418946134 1.400000e-52 219.0
9 TraesCS5D01G261100 chr5D 97.321 112 3 0 7193 7304 544700491 544700380 3.060000e-44 191.0
10 TraesCS5D01G261100 chr5D 95.690 116 3 2 7192 7307 438351944 438351831 1.420000e-42 185.0
11 TraesCS5D01G261100 chr5D 83.051 118 18 2 196 313 509653072 509652957 1.140000e-18 106.0
12 TraesCS5D01G261100 chr5B 94.352 2833 108 28 4174 6986 434828761 434825961 0.000000e+00 4298.0
13 TraesCS5D01G261100 chr5B 95.450 945 32 8 2766 3701 434829701 434828759 0.000000e+00 1496.0
14 TraesCS5D01G261100 chr5B 93.114 668 41 2 1044 1711 434830682 434830020 0.000000e+00 974.0
15 TraesCS5D01G261100 chr5B 97.098 448 12 1 1077 1523 434922583 434922136 0.000000e+00 754.0
16 TraesCS5D01G261100 chr5B 86.281 605 59 13 5618 6213 434920617 434920028 3.270000e-178 636.0
17 TraesCS5D01G261100 chr5B 94.464 289 9 3 1711 1995 434829989 434829704 9.900000e-119 438.0
18 TraesCS5D01G261100 chr5B 83.415 410 53 9 6574 6974 434919605 434919202 4.740000e-97 366.0
19 TraesCS5D01G261100 chr5B 86.909 275 22 10 6279 6543 434919873 434919603 6.300000e-76 296.0
20 TraesCS5D01G261100 chr5B 88.482 191 21 1 7295 7484 27407593 27407403 6.490000e-56 230.0
21 TraesCS5D01G261100 chr5B 92.105 152 9 3 7010 7160 434825965 434825816 2.350000e-50 211.0
22 TraesCS5D01G261100 chr5B 96.581 117 4 0 7183 7299 441671891 441672007 2.370000e-45 195.0
23 TraesCS5D01G261100 chr5B 95.763 118 5 0 7185 7302 559999865 559999748 3.060000e-44 191.0
24 TraesCS5D01G261100 chr5B 95.763 118 5 0 7193 7310 678315118 678315001 3.060000e-44 191.0
25 TraesCS5D01G261100 chr5B 75.486 257 45 10 209 462 550139746 550139505 8.820000e-20 110.0
26 TraesCS5D01G261100 chr5B 82.171 129 19 3 7577 7702 115863516 115863643 3.170000e-19 108.0
27 TraesCS5D01G261100 chr5A 93.862 2558 101 24 4639 7162 469112555 469110020 0.000000e+00 3803.0
28 TraesCS5D01G261100 chr5A 91.215 1514 78 22 1 1502 469492905 469491435 0.000000e+00 2008.0
29 TraesCS5D01G261100 chr5A 93.274 669 30 4 1015 1673 469113778 469113115 0.000000e+00 972.0
30 TraesCS5D01G261100 chr5A 91.304 690 37 10 7525 8197 536367917 536368600 0.000000e+00 920.0
31 TraesCS5D01G261100 chr5A 95.434 438 19 1 1084 1521 469423616 469423180 0.000000e+00 697.0
32 TraesCS5D01G261100 chr5A 87.417 604 63 5 5617 6213 469421946 469421349 0.000000e+00 682.0
33 TraesCS5D01G261100 chr5A 84.116 724 92 11 6266 6974 469421207 469420492 0.000000e+00 678.0
34 TraesCS5D01G261100 chr5A 93.548 279 18 0 1084 1362 456294132 456293854 4.640000e-112 416.0
35 TraesCS5D01G261100 chr5A 95.038 262 9 2 1711 1968 469112917 469112656 7.760000e-110 409.0
36 TraesCS5D01G261100 chr5A 85.000 260 30 7 1714 1967 469422208 469421952 1.070000e-63 255.0
37 TraesCS5D01G261100 chr5A 87.255 204 23 3 638 839 368563061 368562859 6.490000e-56 230.0
38 TraesCS5D01G261100 chr1B 96.244 772 29 0 1995 2766 170574850 170574079 0.000000e+00 1266.0
39 TraesCS5D01G261100 chr1B 85.033 461 45 13 7666 8109 44608881 44608428 1.640000e-121 448.0
40 TraesCS5D01G261100 chr1B 84.946 279 20 7 7301 7571 44609195 44608931 6.390000e-66 263.0
41 TraesCS5D01G261100 chr1B 79.259 405 38 13 2777 3163 348330960 348330584 3.000000e-59 241.0
42 TraesCS5D01G261100 chr1B 87.805 205 22 2 638 839 562893903 562894107 3.880000e-58 237.0
43 TraesCS5D01G261100 chr1B 75.000 252 42 14 205 450 512979899 512979663 6.860000e-16 97.1
44 TraesCS5D01G261100 chr2B 89.696 922 68 13 7299 8197 575829106 575830023 0.000000e+00 1151.0
45 TraesCS5D01G261100 chr2B 90.701 613 37 8 7600 8197 442926270 442925663 0.000000e+00 798.0
46 TraesCS5D01G261100 chr2B 84.946 279 23 9 7299 7571 36497095 36496830 1.780000e-66 265.0
47 TraesCS5D01G261100 chr2B 86.730 211 24 2 633 839 465132916 465133126 1.800000e-56 231.0
48 TraesCS5D01G261100 chr2B 88.971 136 13 2 8174 8307 798306395 798306260 5.160000e-37 167.0
49 TraesCS5D01G261100 chr1A 96.541 665 19 4 7299 7962 369502806 369502145 0.000000e+00 1098.0
50 TraesCS5D01G261100 chr1A 98.131 107 2 0 7196 7302 403636545 403636439 3.960000e-43 187.0
51 TraesCS5D01G261100 chr1A 94.872 117 5 1 7184 7299 531866983 531867099 1.840000e-41 182.0
52 TraesCS5D01G261100 chr1A 100.000 39 0 0 8269 8307 369502148 369502110 1.160000e-08 73.1
53 TraesCS5D01G261100 chr7A 92.238 773 57 3 1994 2764 114634040 114633269 0.000000e+00 1092.0
54 TraesCS5D01G261100 chr7A 95.642 413 16 2 3706 4117 10282396 10282807 0.000000e+00 662.0
55 TraesCS5D01G261100 chr7A 98.198 111 2 0 7192 7302 513215693 513215583 2.370000e-45 195.0
56 TraesCS5D01G261100 chr7A 97.321 112 2 1 7192 7303 101275264 101275374 1.100000e-43 189.0
57 TraesCS5D01G261100 chr7D 91.462 773 64 2 1995 2766 260978 261749 0.000000e+00 1061.0
58 TraesCS5D01G261100 chr7D 91.097 775 65 3 1995 2766 185760500 185759727 0.000000e+00 1046.0
59 TraesCS5D01G261100 chr7D 91.085 774 65 3 1994 2766 144159707 144158937 0.000000e+00 1044.0
60 TraesCS5D01G261100 chr7D 91.074 773 67 2 1995 2766 501110673 501109902 0.000000e+00 1044.0
61 TraesCS5D01G261100 chr7D 96.610 413 12 1 3706 4118 620116078 620115668 0.000000e+00 684.0
62 TraesCS5D01G261100 chr7D 87.333 450 37 9 7668 8102 110459386 110458942 1.610000e-136 497.0
63 TraesCS5D01G261100 chr7D 85.612 278 22 8 7300 7571 110459703 110459438 8.210000e-70 276.0
64 TraesCS5D01G261100 chr7D 93.496 123 6 2 7193 7313 52468753 52468631 1.840000e-41 182.0
65 TraesCS5D01G261100 chr7D 91.176 136 9 3 8174 8307 634367178 634367312 1.840000e-41 182.0
66 TraesCS5D01G261100 chr7D 82.796 186 20 8 7299 7484 232341944 232341771 1.120000e-33 156.0
67 TraesCS5D01G261100 chr7D 77.612 268 42 12 191 456 153943633 153943884 6.720000e-31 147.0
68 TraesCS5D01G261100 chr7D 93.023 86 5 1 8221 8305 110458942 110458857 3.150000e-24 124.0
69 TraesCS5D01G261100 chr7D 86.813 91 12 0 7301 7391 169027979 169028069 1.480000e-17 102.0
70 TraesCS5D01G261100 chr7D 84.810 79 10 2 7303 7380 230464570 230464647 2.490000e-10 78.7
71 TraesCS5D01G261100 chr7D 82.353 85 13 1 7400 7484 28771689 28771771 1.160000e-08 73.1
72 TraesCS5D01G261100 chr1D 91.108 776 67 2 1991 2766 96934067 96933294 0.000000e+00 1050.0
73 TraesCS5D01G261100 chr1D 96.145 415 14 2 3706 4119 397217615 397218028 0.000000e+00 676.0
74 TraesCS5D01G261100 chr1D 85.149 404 33 13 7485 7866 464024745 464024347 1.010000e-103 388.0
75 TraesCS5D01G261100 chr1D 90.374 187 16 1 638 822 276797594 276797408 2.320000e-60 244.0
76 TraesCS5D01G261100 chr1D 85.714 203 27 1 639 839 199421303 199421505 6.530000e-51 213.0
77 TraesCS5D01G261100 chr1D 86.000 200 24 4 639 836 285439753 285439556 2.350000e-50 211.0
78 TraesCS5D01G261100 chr1D 85.437 206 26 3 636 839 436103887 436104090 2.350000e-50 211.0
79 TraesCS5D01G261100 chr1D 83.645 214 31 3 628 839 225401891 225402102 1.830000e-46 198.0
80 TraesCS5D01G261100 chr1D 84.390 205 29 3 638 839 445264542 445264746 1.830000e-46 198.0
81 TraesCS5D01G261100 chr1D 98.148 108 2 0 7193 7300 349422925 349423032 1.100000e-43 189.0
82 TraesCS5D01G261100 chr1D 97.196 107 3 0 7193 7299 48024729 48024623 1.840000e-41 182.0
83 TraesCS5D01G261100 chr1D 97.196 107 3 0 7193 7299 73714858 73714964 1.840000e-41 182.0
84 TraesCS5D01G261100 chr1D 88.793 116 13 0 7368 7483 313133852 313133967 8.690000e-30 143.0
85 TraesCS5D01G261100 chr1D 88.095 84 10 0 7301 7384 373375723 373375640 5.310000e-17 100.0
86 TraesCS5D01G261100 chr1D 83.333 84 14 0 1451 1534 26670109 26670192 2.490000e-10 78.7
87 TraesCS5D01G261100 chr3D 91.074 773 67 2 1995 2766 120626123 120626894 0.000000e+00 1044.0
88 TraesCS5D01G261100 chr3D 93.961 414 19 5 3705 4117 43718028 43717620 9.160000e-174 621.0
89 TraesCS5D01G261100 chr3D 82.783 424 47 13 3187 3599 135128832 135129240 1.030000e-93 355.0
90 TraesCS5D01G261100 chr3D 85.000 240 30 3 2953 3187 135126885 135127123 1.080000e-58 239.0
91 TraesCS5D01G261100 chr3D 86.765 204 23 4 638 839 586108568 586108367 3.020000e-54 224.0
92 TraesCS5D01G261100 chr3D 91.912 136 9 2 8174 8307 160628237 160628372 1.100000e-43 189.0
93 TraesCS5D01G261100 chr3D 96.491 114 3 1 7188 7301 614541796 614541908 3.960000e-43 187.0
94 TraesCS5D01G261100 chr3D 88.235 136 14 2 8174 8307 570263259 570263124 2.400000e-35 161.0
95 TraesCS5D01G261100 chr3D 91.304 115 6 4 2764 2877 135126739 135126850 4.020000e-33 154.0
96 TraesCS5D01G261100 chr3D 84.810 79 10 2 7303 7380 278500288 278500365 2.490000e-10 78.7
97 TraesCS5D01G261100 chr3B 90.865 613 35 9 7600 8197 806126178 806125572 0.000000e+00 802.0
98 TraesCS5D01G261100 chr3B 88.235 204 21 2 638 839 786867567 786867365 3.000000e-59 241.0
99 TraesCS5D01G261100 chr3B 79.032 186 20 9 7299 7484 558505122 558504956 8.820000e-20 110.0
100 TraesCS5D01G261100 chr3B 76.804 194 34 7 264 456 749679523 749679340 1.910000e-16 99.0
101 TraesCS5D01G261100 chr6A 90.468 619 38 9 7594 8197 162422113 162422725 0.000000e+00 797.0
102 TraesCS5D01G261100 chr6A 86.207 203 26 1 639 839 557985067 557984865 1.400000e-52 219.0
103 TraesCS5D01G261100 chr6A 96.491 114 4 0 7188 7301 106923557 106923444 1.100000e-43 189.0
104 TraesCS5D01G261100 chr6A 95.652 115 4 1 7186 7300 272347669 272347782 5.120000e-42 183.0
105 TraesCS5D01G261100 chr6A 94.915 118 5 1 7186 7303 535140103 535140219 5.120000e-42 183.0
106 TraesCS5D01G261100 chr6A 90.840 131 10 2 7173 7302 5061830 5061701 3.080000e-39 174.0
107 TraesCS5D01G261100 chr6A 87.912 91 11 0 7301 7391 561609058 561609148 3.170000e-19 108.0
108 TraesCS5D01G261100 chr6A 89.041 73 4 4 7301 7371 51764482 51764552 4.130000e-13 87.9
109 TraesCS5D01G261100 chr6D 99.282 418 1 2 3705 4121 87080615 87081031 0.000000e+00 754.0
110 TraesCS5D01G261100 chr6D 94.498 418 15 5 3707 4118 29840062 29839647 9.090000e-179 638.0
111 TraesCS5D01G261100 chr6D 96.373 386 12 2 3734 4118 4627960 4627576 1.180000e-177 634.0
112 TraesCS5D01G261100 chr6D 86.012 336 35 6 7666 7995 384372961 384372632 4.770000e-92 350.0
113 TraesCS5D01G261100 chr6D 87.319 276 18 7 7301 7571 384373273 384373010 4.870000e-77 300.0
114 TraesCS5D01G261100 chr6D 87.500 208 21 3 634 839 402325057 402325261 1.390000e-57 235.0
115 TraesCS5D01G261100 chr6D 84.018 219 32 2 638 854 114764166 114763949 3.040000e-49 207.0
116 TraesCS5D01G261100 chr6D 84.762 210 29 2 632 839 402882105 402882313 3.040000e-49 207.0
117 TraesCS5D01G261100 chr6D 96.429 112 4 0 7191 7302 112344484 112344373 1.420000e-42 185.0
118 TraesCS5D01G261100 chr6D 97.196 107 3 0 7193 7299 81674638 81674744 1.840000e-41 182.0
119 TraesCS5D01G261100 chr6D 95.614 114 4 1 7189 7302 457694100 457693988 1.840000e-41 182.0
120 TraesCS5D01G261100 chr4B 82.375 783 71 25 7534 8307 626510820 626510096 3.290000e-173 619.0
121 TraesCS5D01G261100 chr4B 86.598 194 24 1 639 830 71704416 71704609 6.530000e-51 213.0
122 TraesCS5D01G261100 chr4B 95.652 115 5 0 7185 7299 40784357 40784471 1.420000e-42 185.0
123 TraesCS5D01G261100 chr4B 96.429 112 4 0 7193 7304 182254800 182254689 1.420000e-42 185.0
124 TraesCS5D01G261100 chr4B 94.783 115 4 2 7186 7299 191365334 191365447 2.380000e-40 178.0
125 TraesCS5D01G261100 chr4B 88.235 136 14 2 8174 8307 59870066 59869931 2.400000e-35 161.0
126 TraesCS5D01G261100 chr4B 82.031 128 17 5 7577 7702 242924848 242924971 4.100000e-18 104.0
127 TraesCS5D01G261100 chr2A 80.861 836 68 33 7299 8102 81174625 81173850 2.600000e-159 573.0
128 TraesCS5D01G261100 chr2A 96.552 116 3 1 7193 7307 16546939 16547054 3.060000e-44 191.0
129 TraesCS5D01G261100 chr2A 91.000 100 8 1 7299 7398 655290053 655290151 5.230000e-27 134.0
130 TraesCS5D01G261100 chr7B 84.768 453 47 13 7666 8102 603818615 603819061 1.280000e-117 435.0
131 TraesCS5D01G261100 chr7B 96.491 114 3 1 7186 7299 523681969 523682081 3.960000e-43 187.0
132 TraesCS5D01G261100 chr7B 95.690 116 4 1 7188 7303 22065647 22065533 1.420000e-42 185.0
133 TraesCS5D01G261100 chr7B 88.971 136 13 2 8174 8307 60370211 60370346 5.160000e-37 167.0
134 TraesCS5D01G261100 chr7B 88.971 136 13 2 8174 8307 486727554 486727419 5.160000e-37 167.0
135 TraesCS5D01G261100 chr7B 93.182 88 5 1 8221 8307 603819061 603819148 2.430000e-25 128.0
136 TraesCS5D01G261100 chr7B 85.149 101 14 1 7299 7399 553104895 553104994 1.480000e-17 102.0
137 TraesCS5D01G261100 chr7B 81.111 90 12 2 7391 7477 11250558 11250645 5.380000e-07 67.6
138 TraesCS5D01G261100 chr4A 88.293 205 21 2 638 839 211380219 211380423 8.330000e-60 243.0
139 TraesCS5D01G261100 chr4A 87.745 204 23 1 638 839 624353351 624353148 3.880000e-58 237.0
140 TraesCS5D01G261100 chr4A 88.770 187 19 1 638 822 286747844 286747658 2.330000e-55 228.0
141 TraesCS5D01G261100 chr4A 93.496 123 7 1 7180 7302 699042529 699042408 1.840000e-41 182.0
142 TraesCS5D01G261100 chr4A 93.103 87 6 0 8141 8227 652841971 652842057 2.430000e-25 128.0
143 TraesCS5D01G261100 chr4D 87.745 204 23 1 638 839 114578956 114579159 3.880000e-58 237.0
144 TraesCS5D01G261100 chr4D 97.222 108 3 0 7192 7299 138117753 138117860 5.120000e-42 183.0
145 TraesCS5D01G261100 chr4D 89.051 137 12 3 8174 8307 24117196 24117060 5.160000e-37 167.0
146 TraesCS5D01G261100 chr4D 88.889 81 9 0 7301 7381 86314865 86314945 5.310000e-17 100.0
147 TraesCS5D01G261100 chrUn 85.446 213 27 3 638 847 87093624 87093413 1.400000e-52 219.0
148 TraesCS5D01G261100 chrUn 83.744 203 31 2 639 839 91651122 91651324 3.060000e-44 191.0
149 TraesCS5D01G261100 chrUn 83.744 203 31 2 639 839 239780584 239780382 3.060000e-44 191.0
150 TraesCS5D01G261100 chrUn 83.744 203 31 2 639 839 274319910 274320112 3.060000e-44 191.0
151 TraesCS5D01G261100 chrUn 96.429 112 4 0 7192 7303 110700246 110700135 1.420000e-42 185.0
152 TraesCS5D01G261100 chrUn 97.248 109 3 0 7192 7300 143995223 143995331 1.420000e-42 185.0
153 TraesCS5D01G261100 chrUn 97.222 108 3 0 7192 7299 267451511 267451404 5.120000e-42 183.0
154 TraesCS5D01G261100 chrUn 97.222 108 3 0 7192 7299 340254879 340254772 5.120000e-42 183.0
155 TraesCS5D01G261100 chrUn 94.167 120 5 2 7190 7308 91488905 91489023 1.840000e-41 182.0
156 TraesCS5D01G261100 chrUn 95.536 112 5 0 7189 7300 355880605 355880494 6.620000e-41 180.0
157 TraesCS5D01G261100 chrUn 96.296 108 4 0 7192 7299 77508705 77508812 2.380000e-40 178.0
158 TraesCS5D01G261100 chrUn 96.296 108 4 0 7192 7299 260324627 260324734 2.380000e-40 178.0
159 TraesCS5D01G261100 chrUn 96.262 107 4 0 7193 7299 37054870 37054976 8.570000e-40 176.0
160 TraesCS5D01G261100 chrUn 95.495 111 4 1 7189 7299 301837031 301836922 8.570000e-40 176.0
161 TraesCS5D01G261100 chrUn 93.220 118 6 1 7193 7308 322990761 322990644 1.110000e-38 172.0
162 TraesCS5D01G261100 chrUn 81.683 202 33 4 637 835 394071888 394071688 1.850000e-36 165.0
163 TraesCS5D01G261100 chrUn 81.818 198 31 4 629 823 215698564 215698369 2.400000e-35 161.0
164 TraesCS5D01G261100 chrUn 81.818 198 31 4 629 823 215704811 215704616 2.400000e-35 161.0
165 TraesCS5D01G261100 chrUn 87.023 131 17 0 642 772 56266857 56266727 1.870000e-31 148.0
166 TraesCS5D01G261100 chr3A 96.522 115 4 0 7193 7307 152176379 152176493 3.060000e-44 191.0
167 TraesCS5D01G261100 chr3A 92.857 126 7 2 7183 7307 564540097 564540221 1.840000e-41 182.0
168 TraesCS5D01G261100 chr6B 96.491 114 4 0 7189 7302 551910551 551910664 1.100000e-43 189.0
169 TraesCS5D01G261100 chr6B 89.623 106 11 0 7299 7404 485762866 485762761 1.450000e-27 135.0
170 TraesCS5D01G261100 chr2D 94.215 121 7 0 7182 7302 627971630 627971510 1.420000e-42 185.0
171 TraesCS5D01G261100 chr2D 86.813 91 12 0 7301 7391 189523038 189523128 1.480000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G261100 chr5D 367434541 367442847 8306 True 15341.000000 15341 100.000000 1 8307 1 chr5D.!!$R1 8306
1 TraesCS5D01G261100 chr5D 543697597 543698369 772 True 1055.000000 1055 91.344000 1995 2766 1 chr5D.!!$R5 771
2 TraesCS5D01G261100 chr5D 367587366 367590488 3122 True 552.750000 765 87.890500 1077 6974 4 chr5D.!!$R7 5897
3 TraesCS5D01G261100 chr5B 434825816 434830682 4866 True 1483.400000 4298 93.897000 1044 7160 5 chr5B.!!$R5 6116
4 TraesCS5D01G261100 chr5B 434919202 434922583 3381 True 513.000000 754 88.425750 1077 6974 4 chr5B.!!$R6 5897
5 TraesCS5D01G261100 chr5A 469491435 469492905 1470 True 2008.000000 2008 91.215000 1 1502 1 chr5A.!!$R3 1501
6 TraesCS5D01G261100 chr5A 469110020 469113778 3758 True 1728.000000 3803 94.058000 1015 7162 3 chr5A.!!$R4 6147
7 TraesCS5D01G261100 chr5A 536367917 536368600 683 False 920.000000 920 91.304000 7525 8197 1 chr5A.!!$F1 672
8 TraesCS5D01G261100 chr5A 469420492 469423616 3124 True 578.000000 697 87.991750 1084 6974 4 chr5A.!!$R5 5890
9 TraesCS5D01G261100 chr1B 170574079 170574850 771 True 1266.000000 1266 96.244000 1995 2766 1 chr1B.!!$R1 771
10 TraesCS5D01G261100 chr1B 44608428 44609195 767 True 355.500000 448 84.989500 7301 8109 2 chr1B.!!$R4 808
11 TraesCS5D01G261100 chr2B 575829106 575830023 917 False 1151.000000 1151 89.696000 7299 8197 1 chr2B.!!$F2 898
12 TraesCS5D01G261100 chr2B 442925663 442926270 607 True 798.000000 798 90.701000 7600 8197 1 chr2B.!!$R2 597
13 TraesCS5D01G261100 chr1A 369502110 369502806 696 True 585.550000 1098 98.270500 7299 8307 2 chr1A.!!$R2 1008
14 TraesCS5D01G261100 chr7A 114633269 114634040 771 True 1092.000000 1092 92.238000 1994 2764 1 chr7A.!!$R1 770
15 TraesCS5D01G261100 chr7D 260978 261749 771 False 1061.000000 1061 91.462000 1995 2766 1 chr7D.!!$F1 771
16 TraesCS5D01G261100 chr7D 185759727 185760500 773 True 1046.000000 1046 91.097000 1995 2766 1 chr7D.!!$R3 771
17 TraesCS5D01G261100 chr7D 144158937 144159707 770 True 1044.000000 1044 91.085000 1994 2766 1 chr7D.!!$R2 772
18 TraesCS5D01G261100 chr7D 501109902 501110673 771 True 1044.000000 1044 91.074000 1995 2766 1 chr7D.!!$R5 771
19 TraesCS5D01G261100 chr7D 110458857 110459703 846 True 299.000000 497 88.656000 7300 8305 3 chr7D.!!$R7 1005
20 TraesCS5D01G261100 chr1D 96933294 96934067 773 True 1050.000000 1050 91.108000 1991 2766 1 chr1D.!!$R2 775
21 TraesCS5D01G261100 chr3D 120626123 120626894 771 False 1044.000000 1044 91.074000 1995 2766 1 chr3D.!!$F1 771
22 TraesCS5D01G261100 chr3D 135126739 135129240 2501 False 249.333333 355 86.362333 2764 3599 3 chr3D.!!$F5 835
23 TraesCS5D01G261100 chr3B 806125572 806126178 606 True 802.000000 802 90.865000 7600 8197 1 chr3B.!!$R4 597
24 TraesCS5D01G261100 chr6A 162422113 162422725 612 False 797.000000 797 90.468000 7594 8197 1 chr6A.!!$F2 603
25 TraesCS5D01G261100 chr6D 384372632 384373273 641 True 325.000000 350 86.665500 7301 7995 2 chr6D.!!$R6 694
26 TraesCS5D01G261100 chr4B 626510096 626510820 724 True 619.000000 619 82.375000 7534 8307 1 chr4B.!!$R3 773
27 TraesCS5D01G261100 chr2A 81173850 81174625 775 True 573.000000 573 80.861000 7299 8102 1 chr2A.!!$R1 803
28 TraesCS5D01G261100 chr7B 603818615 603819148 533 False 281.500000 435 88.975000 7666 8307 2 chr7B.!!$F5 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 653 0.179000 TAGACGTACTCCCTCCGGTC 59.821 60.0 0.00 0.0 0.00 4.79 F
1065 1082 0.179020 TTGTGCCTGGTTGGTCTCTG 60.179 55.0 0.00 0.0 38.35 3.35 F
2397 3600 0.248661 CACCTACGCGACTCCATCTG 60.249 60.0 15.93 0.0 0.00 2.90 F
3851 6799 0.238289 CGCTCCAAAATGCAACTCGT 59.762 50.0 0.00 0.0 0.00 4.18 F
4095 7043 0.179702 TGATCAGGTGCAGATGAGCC 59.820 55.0 12.39 0.0 30.86 4.70 F
4096 7044 0.534652 GATCAGGTGCAGATGAGCCC 60.535 60.0 5.26 0.0 0.00 5.19 F
4114 7062 0.764890 CCGGGCTCCAGGATGAATTA 59.235 55.0 0.00 0.0 39.69 1.40 F
4981 7937 1.305219 TGCAGAAAAATCGGCTCCGG 61.305 55.0 8.59 0.0 40.25 5.14 F
6369 9455 0.249031 ACAAGCTTGCAGTTTTCGGC 60.249 50.0 26.27 0.0 41.20 5.54 F
7206 10373 0.531200 AAAGCTACTCCCTCCGTTCG 59.469 55.0 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 3291 0.242017 GGCGGATTCAGGCATATTGC 59.758 55.000 5.51 0.00 44.08 3.56 R
2558 3761 1.084084 CCTCCCCCTAGGTTTCCCA 59.916 63.158 8.29 0.00 36.75 4.37 R
4076 7024 0.179702 GGCTCATCTGCACCTGATCA 59.820 55.000 0.00 0.00 34.04 2.92 R
5172 8128 0.761187 ACCTCCCGGACATCATGATG 59.239 55.000 29.95 29.95 44.15 3.07 R
5551 8511 1.339929 ACCGTTTTGCTTCATCCAACC 59.660 47.619 0.00 0.00 0.00 3.77 R
5788 8750 2.906389 TGGTCTGTAGCTTCATGTTCCT 59.094 45.455 0.00 0.00 0.00 3.36 R
5789 8751 3.334583 TGGTCTGTAGCTTCATGTTCC 57.665 47.619 0.00 0.00 0.00 3.62 R
6929 10086 0.101759 GGCTACCGTAGTTCATCGCA 59.898 55.000 7.40 0.00 0.00 5.10 R
7280 10447 0.460311 CTACTCCCTCCGTTCGCAAT 59.540 55.000 0.00 0.00 0.00 3.56 R
8262 11499 4.941873 AGTTTCTAAATAAGTTCAGCCCCG 59.058 41.667 0.00 0.00 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 7.712797 TGTTGGACATTCTTCTAAAAGTTTCC 58.287 34.615 0.00 0.00 33.95 3.13
156 158 0.818296 AGGTCAATCCGGAACTCGAG 59.182 55.000 9.01 11.84 42.43 4.04
157 159 0.806492 GGTCAATCCGGAACTCGAGC 60.806 60.000 9.01 8.72 42.43 5.03
160 162 0.867753 CAATCCGGAACTCGAGCTCG 60.868 60.000 30.03 30.03 42.43 5.03
250 252 2.575735 TGGTTCAAGATGCTCCCATGTA 59.424 45.455 0.00 0.00 0.00 2.29
256 258 3.117491 AGATGCTCCCATGTATGAACG 57.883 47.619 0.00 0.00 0.00 3.95
258 260 0.463654 TGCTCCCATGTATGAACGCC 60.464 55.000 0.00 0.00 0.00 5.68
259 261 0.179045 GCTCCCATGTATGAACGCCT 60.179 55.000 0.00 0.00 0.00 5.52
327 329 2.611225 ACAAAAAGCAAAATCGGGCA 57.389 40.000 0.00 0.00 0.00 5.36
368 370 2.871453 AGTTTACCCGACAGCCAAAAT 58.129 42.857 0.00 0.00 0.00 1.82
372 374 1.102978 ACCCGACAGCCAAAATATGC 58.897 50.000 0.00 0.00 0.00 3.14
416 418 9.130661 TCCTCAAATGTCTAAACTTCATCAAAA 57.869 29.630 0.00 0.00 0.00 2.44
484 486 3.764885 AGCGATTTTACTGTTCATGCC 57.235 42.857 0.00 0.00 0.00 4.40
519 521 0.458889 CCAAATGCCGCATCCACAAG 60.459 55.000 6.27 0.00 0.00 3.16
586 588 0.497265 CGTGCTTATACGCGTGTAGC 59.503 55.000 24.59 25.12 43.95 3.58
608 610 2.553602 AGTGTGTGATGGACGTACGTTA 59.446 45.455 23.70 15.14 0.00 3.18
619 621 5.899318 TGGACGTACGTTATTTTGTTTACG 58.101 37.500 23.70 0.00 38.56 3.18
621 623 6.129221 TGGACGTACGTTATTTTGTTTACGAG 60.129 38.462 23.70 0.00 36.63 4.18
635 637 4.159266 CGAGGGGCGTCTGATAGA 57.841 61.111 0.00 0.00 34.64 1.98
636 638 1.655329 CGAGGGGCGTCTGATAGAC 59.345 63.158 0.00 0.00 41.71 2.59
647 649 3.140623 GTCTGATAGACGTACTCCCTCC 58.859 54.545 0.00 0.00 35.28 4.30
648 650 2.144730 CTGATAGACGTACTCCCTCCG 58.855 57.143 0.00 0.00 0.00 4.63
649 651 1.202734 TGATAGACGTACTCCCTCCGG 60.203 57.143 0.00 0.00 0.00 5.14
650 652 0.842635 ATAGACGTACTCCCTCCGGT 59.157 55.000 0.00 0.00 0.00 5.28
651 653 0.179000 TAGACGTACTCCCTCCGGTC 59.821 60.000 0.00 0.00 0.00 4.79
652 654 2.044551 ACGTACTCCCTCCGGTCC 60.045 66.667 0.00 0.00 0.00 4.46
661 663 3.102204 CTCCCTCCGGTCCTTTTTACTA 58.898 50.000 0.00 0.00 0.00 1.82
693 695 6.484364 AGATTTTGGTCAGGTCAAACATTT 57.516 33.333 0.00 0.00 34.34 2.32
1065 1082 0.179020 TTGTGCCTGGTTGGTCTCTG 60.179 55.000 0.00 0.00 38.35 3.35
1509 1534 2.171448 ACCAAGCTCCTCATGATGGTAC 59.829 50.000 13.53 6.43 39.29 3.34
1515 1540 0.681733 CCTCATGATGGTACCCTCCG 59.318 60.000 10.07 3.50 0.00 4.63
1599 1736 8.964420 AACATGTTTATTTAGGATTGAACACG 57.036 30.769 4.92 0.00 30.81 4.49
1603 1740 8.031848 TGTTTATTTAGGATTGAACACGTACC 57.968 34.615 0.00 0.00 0.00 3.34
1842 2977 7.568199 AAATGTTGTGTTATCCAGGTATAGC 57.432 36.000 0.00 0.00 0.00 2.97
2092 3291 8.311836 TCTTGAGGACCTTACAAAGTATAACAG 58.688 37.037 0.00 0.00 0.00 3.16
2163 3362 2.564062 CAAATGATGAAGGGGTGCAAGT 59.436 45.455 0.00 0.00 0.00 3.16
2305 3504 3.308688 CCATCTTCCACTGGTCCATCTTT 60.309 47.826 0.00 0.00 0.00 2.52
2397 3600 0.248661 CACCTACGCGACTCCATCTG 60.249 60.000 15.93 0.00 0.00 2.90
2937 4141 8.939201 ATTACTTGTGTATCTCTGACATCAAG 57.061 34.615 12.42 12.42 39.35 3.02
3069 4294 5.565509 TGTATCTTGCAAATCTAACACCCA 58.434 37.500 0.00 0.00 0.00 4.51
3150 4375 0.880278 CGGATGCCATACCAGTTCCG 60.880 60.000 0.00 0.00 39.98 4.30
3160 4385 2.281761 CAGTTCCGGGCTGCACTT 60.282 61.111 12.66 0.00 0.00 3.16
3388 6328 1.887198 AGTGACGTGACTGTTCCCTAG 59.113 52.381 6.94 0.00 0.00 3.02
3434 6375 2.322355 ATCCATCTTCTCACCAAGCG 57.678 50.000 0.00 0.00 0.00 4.68
3442 6383 3.832237 CTCACCAAGCGTGCCCACT 62.832 63.158 0.00 0.00 42.69 4.00
3505 6453 4.003648 CGAAGCTTGAGATGTAAACCCTT 58.996 43.478 2.10 0.00 0.00 3.95
3601 6549 3.736094 TCAGATTTCTCCACCCCATAGT 58.264 45.455 0.00 0.00 0.00 2.12
3609 6557 3.263425 TCTCCACCCCATAGTTCTTGTTC 59.737 47.826 0.00 0.00 0.00 3.18
3648 6596 0.742505 TACCTATTGTGGAGACCGCG 59.257 55.000 0.00 0.00 36.72 6.46
3665 6613 3.775654 GAGAGGGAGGCCACCACG 61.776 72.222 21.72 0.00 0.00 4.94
3702 6650 6.759497 AGATTTGCTAAGTTAACCATGTCC 57.241 37.500 0.88 0.00 0.00 4.02
3703 6651 6.485171 AGATTTGCTAAGTTAACCATGTCCT 58.515 36.000 0.88 0.00 0.00 3.85
3704 6652 5.957842 TTTGCTAAGTTAACCATGTCCTG 57.042 39.130 0.88 0.00 0.00 3.86
3712 6660 2.124983 CCATGTCCTGGGAGTGCG 60.125 66.667 0.00 0.00 41.82 5.34
3713 6661 2.124983 CATGTCCTGGGAGTGCGG 60.125 66.667 0.00 0.00 0.00 5.69
3714 6662 4.101448 ATGTCCTGGGAGTGCGGC 62.101 66.667 0.00 0.00 0.00 6.53
3718 6666 4.473520 CCTGGGAGTGCGGCGAAT 62.474 66.667 12.98 0.00 0.00 3.34
3719 6667 2.892425 CTGGGAGTGCGGCGAATC 60.892 66.667 12.98 4.25 0.00 2.52
3720 6668 3.376935 CTGGGAGTGCGGCGAATCT 62.377 63.158 12.98 4.64 0.00 2.40
3721 6669 2.892425 GGGAGTGCGGCGAATCTG 60.892 66.667 12.98 0.00 0.00 2.90
3731 6679 4.473520 CGAATCTGCACCCGGGCT 62.474 66.667 24.08 4.79 34.04 5.19
3732 6680 2.514824 GAATCTGCACCCGGGCTC 60.515 66.667 24.08 13.62 34.04 4.70
3733 6681 3.329542 GAATCTGCACCCGGGCTCA 62.330 63.158 24.08 17.97 34.04 4.26
3734 6682 2.615227 GAATCTGCACCCGGGCTCAT 62.615 60.000 24.08 3.38 34.04 2.90
3735 6683 2.615227 AATCTGCACCCGGGCTCATC 62.615 60.000 24.08 5.69 34.04 2.92
3736 6684 3.790437 CTGCACCCGGGCTCATCT 61.790 66.667 24.08 0.00 34.04 2.90
3737 6685 4.100084 TGCACCCGGGCTCATCTG 62.100 66.667 24.08 11.82 34.04 2.90
3739 6687 4.100084 CACCCGGGCTCATCTGCA 62.100 66.667 24.08 0.00 34.04 4.41
3740 6688 4.101448 ACCCGGGCTCATCTGCAC 62.101 66.667 24.08 0.00 34.04 4.57
3741 6689 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
3742 6690 4.864334 CCGGGCTCATCTGCACCC 62.864 72.222 0.00 0.00 39.12 4.61
3747 6695 4.827087 CTCATCTGCACCCGCGCT 62.827 66.667 5.56 0.00 42.97 5.92
3748 6696 4.819761 TCATCTGCACCCGCGCTC 62.820 66.667 5.56 0.00 42.97 5.03
3820 6768 8.459911 AAAAATTCGGGTGGTAGATAATTAGG 57.540 34.615 0.00 0.00 0.00 2.69
3821 6769 6.758806 AATTCGGGTGGTAGATAATTAGGT 57.241 37.500 0.00 0.00 0.00 3.08
3822 6770 5.540400 TTCGGGTGGTAGATAATTAGGTG 57.460 43.478 0.00 0.00 0.00 4.00
3823 6771 3.322828 TCGGGTGGTAGATAATTAGGTGC 59.677 47.826 0.00 0.00 0.00 5.01
3824 6772 3.660865 GGGTGGTAGATAATTAGGTGCG 58.339 50.000 0.00 0.00 0.00 5.34
3825 6773 3.070590 GGGTGGTAGATAATTAGGTGCGT 59.929 47.826 0.00 0.00 0.00 5.24
3826 6774 4.056050 GGTGGTAGATAATTAGGTGCGTG 58.944 47.826 0.00 0.00 0.00 5.34
3827 6775 4.202182 GGTGGTAGATAATTAGGTGCGTGA 60.202 45.833 0.00 0.00 0.00 4.35
3828 6776 4.982916 GTGGTAGATAATTAGGTGCGTGAG 59.017 45.833 0.00 0.00 0.00 3.51
3829 6777 4.038763 TGGTAGATAATTAGGTGCGTGAGG 59.961 45.833 0.00 0.00 0.00 3.86
3830 6778 4.038883 GGTAGATAATTAGGTGCGTGAGGT 59.961 45.833 0.00 0.00 0.00 3.85
3831 6779 4.755266 AGATAATTAGGTGCGTGAGGTT 57.245 40.909 0.00 0.00 0.00 3.50
3832 6780 4.694339 AGATAATTAGGTGCGTGAGGTTC 58.306 43.478 0.00 0.00 0.00 3.62
3833 6781 1.722011 AATTAGGTGCGTGAGGTTCG 58.278 50.000 0.00 0.00 0.00 3.95
3840 6788 4.354155 CGTGAGGTTCGCTCCAAA 57.646 55.556 0.00 0.00 0.00 3.28
3841 6789 2.612200 CGTGAGGTTCGCTCCAAAA 58.388 52.632 0.00 0.00 0.00 2.44
3842 6790 1.156736 CGTGAGGTTCGCTCCAAAAT 58.843 50.000 0.00 0.00 0.00 1.82
3843 6791 1.135972 CGTGAGGTTCGCTCCAAAATG 60.136 52.381 0.00 0.00 0.00 2.32
3844 6792 0.881118 TGAGGTTCGCTCCAAAATGC 59.119 50.000 0.00 0.00 0.00 3.56
3845 6793 0.881118 GAGGTTCGCTCCAAAATGCA 59.119 50.000 0.00 0.00 0.00 3.96
3846 6794 1.269448 GAGGTTCGCTCCAAAATGCAA 59.731 47.619 0.00 0.00 0.00 4.08
3847 6795 1.000274 AGGTTCGCTCCAAAATGCAAC 60.000 47.619 0.00 0.00 0.00 4.17
3848 6796 1.000274 GGTTCGCTCCAAAATGCAACT 60.000 47.619 0.00 0.00 0.00 3.16
3849 6797 2.319472 GTTCGCTCCAAAATGCAACTC 58.681 47.619 0.00 0.00 0.00 3.01
3850 6798 0.516877 TCGCTCCAAAATGCAACTCG 59.483 50.000 0.00 0.00 0.00 4.18
3851 6799 0.238289 CGCTCCAAAATGCAACTCGT 59.762 50.000 0.00 0.00 0.00 4.18
3852 6800 1.334960 CGCTCCAAAATGCAACTCGTT 60.335 47.619 0.00 0.00 0.00 3.85
3853 6801 2.742774 GCTCCAAAATGCAACTCGTTT 58.257 42.857 0.00 0.00 0.00 3.60
3854 6802 2.472488 GCTCCAAAATGCAACTCGTTTG 59.528 45.455 0.00 0.00 38.37 2.93
3855 6803 3.795150 GCTCCAAAATGCAACTCGTTTGA 60.795 43.478 0.00 0.00 37.39 2.69
3856 6804 4.358851 CTCCAAAATGCAACTCGTTTGAA 58.641 39.130 0.00 0.00 37.39 2.69
3857 6805 4.109050 TCCAAAATGCAACTCGTTTGAAC 58.891 39.130 0.00 0.00 37.39 3.18
3858 6806 3.862267 CCAAAATGCAACTCGTTTGAACA 59.138 39.130 0.00 0.00 37.39 3.18
3859 6807 4.507388 CCAAAATGCAACTCGTTTGAACAT 59.493 37.500 0.00 0.00 37.39 2.71
3860 6808 5.006552 CCAAAATGCAACTCGTTTGAACATT 59.993 36.000 0.00 2.94 37.39 2.71
3861 6809 6.456718 CCAAAATGCAACTCGTTTGAACATTT 60.457 34.615 0.00 7.56 37.39 2.32
3862 6810 5.640218 AATGCAACTCGTTTGAACATTTG 57.360 34.783 0.00 0.00 37.39 2.32
3863 6811 4.362932 TGCAACTCGTTTGAACATTTGA 57.637 36.364 4.05 0.00 37.39 2.69
3864 6812 4.350346 TGCAACTCGTTTGAACATTTGAG 58.650 39.130 4.05 0.00 37.39 3.02
3865 6813 3.180387 GCAACTCGTTTGAACATTTGAGC 59.820 43.478 4.05 0.00 37.39 4.26
3866 6814 4.350346 CAACTCGTTTGAACATTTGAGCA 58.650 39.130 0.00 0.00 37.39 4.26
3867 6815 4.630894 ACTCGTTTGAACATTTGAGCAA 57.369 36.364 0.00 0.00 0.00 3.91
3868 6816 4.601019 ACTCGTTTGAACATTTGAGCAAG 58.399 39.130 0.00 0.00 0.00 4.01
3869 6817 4.096382 ACTCGTTTGAACATTTGAGCAAGT 59.904 37.500 0.00 0.00 0.00 3.16
3870 6818 4.597079 TCGTTTGAACATTTGAGCAAGTC 58.403 39.130 0.00 0.00 0.00 3.01
3871 6819 4.335315 TCGTTTGAACATTTGAGCAAGTCT 59.665 37.500 0.00 0.00 0.00 3.24
3872 6820 4.438797 CGTTTGAACATTTGAGCAAGTCTG 59.561 41.667 0.00 0.00 0.00 3.51
3873 6821 5.343249 GTTTGAACATTTGAGCAAGTCTGT 58.657 37.500 0.00 0.00 0.00 3.41
3874 6822 4.556942 TGAACATTTGAGCAAGTCTGTG 57.443 40.909 0.00 0.00 0.00 3.66
3875 6823 3.243168 TGAACATTTGAGCAAGTCTGTGC 60.243 43.478 0.00 0.00 45.28 4.57
3898 6846 4.584327 AAAAAGACAAAATCGGGGTCTG 57.416 40.909 0.00 0.00 40.80 3.51
3899 6847 2.951229 AAGACAAAATCGGGGTCTGT 57.049 45.000 0.00 0.00 40.80 3.41
3900 6848 2.185004 AGACAAAATCGGGGTCTGTG 57.815 50.000 0.00 0.00 40.21 3.66
3901 6849 1.697432 AGACAAAATCGGGGTCTGTGA 59.303 47.619 0.00 0.00 40.21 3.58
3902 6850 2.105821 AGACAAAATCGGGGTCTGTGAA 59.894 45.455 0.00 0.00 40.21 3.18
3903 6851 2.882137 GACAAAATCGGGGTCTGTGAAA 59.118 45.455 0.00 0.00 0.00 2.69
3904 6852 3.292460 ACAAAATCGGGGTCTGTGAAAA 58.708 40.909 0.00 0.00 0.00 2.29
3905 6853 3.702045 ACAAAATCGGGGTCTGTGAAAAA 59.298 39.130 0.00 0.00 0.00 1.94
3906 6854 4.202111 ACAAAATCGGGGTCTGTGAAAAAG 60.202 41.667 0.00 0.00 0.00 2.27
3907 6855 2.951229 ATCGGGGTCTGTGAAAAAGT 57.049 45.000 0.00 0.00 0.00 2.66
3908 6856 2.721425 TCGGGGTCTGTGAAAAAGTT 57.279 45.000 0.00 0.00 0.00 2.66
3909 6857 3.007473 TCGGGGTCTGTGAAAAAGTTT 57.993 42.857 0.00 0.00 0.00 2.66
3910 6858 4.153673 TCGGGGTCTGTGAAAAAGTTTA 57.846 40.909 0.00 0.00 0.00 2.01
3911 6859 3.878699 TCGGGGTCTGTGAAAAAGTTTAC 59.121 43.478 0.00 0.00 0.00 2.01
3912 6860 3.881089 CGGGGTCTGTGAAAAAGTTTACT 59.119 43.478 0.00 0.00 0.00 2.24
3913 6861 4.261031 CGGGGTCTGTGAAAAAGTTTACTG 60.261 45.833 0.00 0.00 0.00 2.74
3914 6862 4.643334 GGGGTCTGTGAAAAAGTTTACTGT 59.357 41.667 0.00 0.00 0.00 3.55
3915 6863 5.126545 GGGGTCTGTGAAAAAGTTTACTGTT 59.873 40.000 0.00 0.00 0.00 3.16
3916 6864 6.263344 GGGTCTGTGAAAAAGTTTACTGTTC 58.737 40.000 0.00 0.00 0.00 3.18
3917 6865 6.127842 GGGTCTGTGAAAAAGTTTACTGTTCA 60.128 38.462 5.58 5.58 32.00 3.18
3918 6866 6.745907 GGTCTGTGAAAAAGTTTACTGTTCAC 59.254 38.462 21.39 21.39 44.16 3.18
3922 6870 8.288217 TGTGAAAAAGTTTACTGTTCACAAAC 57.712 30.769 25.11 6.97 46.89 2.93
3923 6871 8.138712 TGTGAAAAAGTTTACTGTTCACAAACT 58.861 29.630 25.11 8.83 46.89 2.66
3924 6872 8.424731 GTGAAAAAGTTTACTGTTCACAAACTG 58.575 33.333 22.36 0.00 43.78 3.16
3925 6873 8.138712 TGAAAAAGTTTACTGTTCACAAACTGT 58.861 29.630 7.08 6.18 45.85 3.55
3926 6874 8.880878 AAAAAGTTTACTGTTCACAAACTGTT 57.119 26.923 7.08 5.64 42.77 3.16
3927 6875 8.880878 AAAAGTTTACTGTTCACAAACTGTTT 57.119 26.923 7.08 0.00 42.77 2.83
3928 6876 8.880878 AAAGTTTACTGTTCACAAACTGTTTT 57.119 26.923 2.41 0.00 42.77 2.43
3929 6877 7.867445 AGTTTACTGTTCACAAACTGTTTTG 57.133 32.000 2.41 6.15 42.77 2.44
3930 6878 7.653647 AGTTTACTGTTCACAAACTGTTTTGA 58.346 30.769 2.41 8.24 44.38 2.69
3931 6879 7.593644 AGTTTACTGTTCACAAACTGTTTTGAC 59.406 33.333 2.41 1.36 44.38 3.18
3932 6880 4.805219 ACTGTTCACAAACTGTTTTGACC 58.195 39.130 2.41 4.92 44.38 4.02
3933 6881 4.173256 CTGTTCACAAACTGTTTTGACCC 58.827 43.478 2.41 5.58 44.38 4.46
3934 6882 3.175929 GTTCACAAACTGTTTTGACCCG 58.824 45.455 2.41 0.00 44.38 5.28
3935 6883 2.712709 TCACAAACTGTTTTGACCCGA 58.287 42.857 2.41 0.00 44.38 5.14
3936 6884 3.283751 TCACAAACTGTTTTGACCCGAT 58.716 40.909 2.41 0.00 44.38 4.18
3937 6885 3.697045 TCACAAACTGTTTTGACCCGATT 59.303 39.130 2.41 0.00 44.38 3.34
3938 6886 4.158764 TCACAAACTGTTTTGACCCGATTT 59.841 37.500 2.41 0.00 44.38 2.17
3939 6887 4.267452 CACAAACTGTTTTGACCCGATTTG 59.733 41.667 2.41 0.00 44.38 2.32
3940 6888 4.081917 ACAAACTGTTTTGACCCGATTTGT 60.082 37.500 2.41 0.00 44.38 2.83
3941 6889 3.982576 ACTGTTTTGACCCGATTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
3942 6890 3.551846 ACTGTTTTGACCCGATTTGTCT 58.448 40.909 0.00 0.00 33.83 3.41
3943 6891 3.951680 ACTGTTTTGACCCGATTTGTCTT 59.048 39.130 0.00 0.00 33.83 3.01
3944 6892 4.401202 ACTGTTTTGACCCGATTTGTCTTT 59.599 37.500 0.00 0.00 33.83 2.52
3945 6893 5.105513 ACTGTTTTGACCCGATTTGTCTTTT 60.106 36.000 0.00 0.00 33.83 2.27
3946 6894 5.725362 TGTTTTGACCCGATTTGTCTTTTT 58.275 33.333 0.00 0.00 33.83 1.94
3960 6908 2.203480 TTTTTGCCGAGGCCTGCT 60.203 55.556 12.00 0.00 41.09 4.24
3961 6909 2.268076 TTTTTGCCGAGGCCTGCTC 61.268 57.895 12.00 0.00 41.09 4.26
3962 6910 2.974692 TTTTTGCCGAGGCCTGCTCA 62.975 55.000 12.00 0.68 41.09 4.26
3963 6911 3.907260 TTTGCCGAGGCCTGCTCAG 62.907 63.158 12.00 0.00 41.09 3.35
3965 6913 3.859414 GCCGAGGCCTGCTCAGAT 61.859 66.667 12.00 0.00 34.56 2.90
3966 6914 2.502492 GCCGAGGCCTGCTCAGATA 61.502 63.158 12.00 0.00 34.56 1.98
3967 6915 1.825281 GCCGAGGCCTGCTCAGATAT 61.825 60.000 12.00 0.00 34.56 1.63
3968 6916 0.246086 CCGAGGCCTGCTCAGATATC 59.754 60.000 12.00 0.00 0.00 1.63
3969 6917 0.246086 CGAGGCCTGCTCAGATATCC 59.754 60.000 12.00 0.00 0.00 2.59
3970 6918 1.346062 GAGGCCTGCTCAGATATCCA 58.654 55.000 12.00 0.00 0.00 3.41
3971 6919 1.696336 GAGGCCTGCTCAGATATCCAA 59.304 52.381 12.00 0.00 0.00 3.53
3972 6920 2.105477 GAGGCCTGCTCAGATATCCAAA 59.895 50.000 12.00 0.00 0.00 3.28
3973 6921 2.715336 AGGCCTGCTCAGATATCCAAAT 59.285 45.455 3.11 0.00 0.00 2.32
3974 6922 2.818432 GGCCTGCTCAGATATCCAAATG 59.182 50.000 0.00 0.00 0.00 2.32
3975 6923 3.497405 GGCCTGCTCAGATATCCAAATGA 60.497 47.826 0.00 0.00 0.00 2.57
3976 6924 3.752222 GCCTGCTCAGATATCCAAATGAG 59.248 47.826 12.97 12.97 41.68 2.90
3977 6925 4.746089 GCCTGCTCAGATATCCAAATGAGT 60.746 45.833 16.70 0.00 41.00 3.41
3978 6926 5.374921 CCTGCTCAGATATCCAAATGAGTT 58.625 41.667 16.70 0.00 41.00 3.01
3979 6927 5.238868 CCTGCTCAGATATCCAAATGAGTTG 59.761 44.000 16.70 11.40 41.00 3.16
3980 6928 5.993055 TGCTCAGATATCCAAATGAGTTGA 58.007 37.500 16.70 4.21 41.00 3.18
3981 6929 6.417258 TGCTCAGATATCCAAATGAGTTGAA 58.583 36.000 16.70 3.54 41.00 2.69
3982 6930 7.058525 TGCTCAGATATCCAAATGAGTTGAAT 58.941 34.615 16.70 0.00 41.00 2.57
3983 6931 7.558807 TGCTCAGATATCCAAATGAGTTGAATT 59.441 33.333 16.70 0.00 41.00 2.17
3984 6932 8.411683 GCTCAGATATCCAAATGAGTTGAATTT 58.588 33.333 16.70 0.00 41.00 1.82
3987 6935 9.309516 CAGATATCCAAATGAGTTGAATTTTGG 57.690 33.333 0.00 6.89 46.09 3.28
3991 6939 5.505165 CAAATGAGTTGAATTTTGGAGCG 57.495 39.130 0.00 0.00 39.87 5.03
3992 6940 3.855689 ATGAGTTGAATTTTGGAGCGG 57.144 42.857 0.00 0.00 0.00 5.52
3993 6941 1.885887 TGAGTTGAATTTTGGAGCGGG 59.114 47.619 0.00 0.00 0.00 6.13
3994 6942 0.603065 AGTTGAATTTTGGAGCGGGC 59.397 50.000 0.00 0.00 0.00 6.13
3995 6943 0.389817 GTTGAATTTTGGAGCGGGCC 60.390 55.000 0.00 0.00 0.00 5.80
3996 6944 0.541764 TTGAATTTTGGAGCGGGCCT 60.542 50.000 0.84 0.00 0.00 5.19
3997 6945 0.965363 TGAATTTTGGAGCGGGCCTC 60.965 55.000 0.84 0.00 39.98 4.70
3998 6946 0.965363 GAATTTTGGAGCGGGCCTCA 60.965 55.000 0.84 0.00 42.62 3.86
3999 6947 1.250840 AATTTTGGAGCGGGCCTCAC 61.251 55.000 0.84 0.00 42.62 3.51
4000 6948 4.697756 TTTGGAGCGGGCCTCACG 62.698 66.667 0.84 0.00 42.62 4.35
4007 6955 3.499737 CGGGCCTCACGCATCAAC 61.500 66.667 0.84 0.00 40.31 3.18
4008 6956 2.045926 GGGCCTCACGCATCAACT 60.046 61.111 0.84 0.00 40.31 3.16
4009 6957 1.675641 GGGCCTCACGCATCAACTT 60.676 57.895 0.84 0.00 40.31 2.66
4010 6958 0.392461 GGGCCTCACGCATCAACTTA 60.392 55.000 0.84 0.00 40.31 2.24
4011 6959 1.668419 GGCCTCACGCATCAACTTAT 58.332 50.000 0.00 0.00 40.31 1.73
4012 6960 1.599542 GGCCTCACGCATCAACTTATC 59.400 52.381 0.00 0.00 40.31 1.75
4013 6961 2.555199 GCCTCACGCATCAACTTATCT 58.445 47.619 0.00 0.00 37.47 1.98
4014 6962 3.492656 GGCCTCACGCATCAACTTATCTA 60.493 47.826 0.00 0.00 40.31 1.98
4015 6963 3.491267 GCCTCACGCATCAACTTATCTAC 59.509 47.826 0.00 0.00 37.47 2.59
4016 6964 4.051922 CCTCACGCATCAACTTATCTACC 58.948 47.826 0.00 0.00 0.00 3.18
4017 6965 4.441495 CCTCACGCATCAACTTATCTACCA 60.441 45.833 0.00 0.00 0.00 3.25
4018 6966 4.430007 TCACGCATCAACTTATCTACCAC 58.570 43.478 0.00 0.00 0.00 4.16
4019 6967 3.555956 CACGCATCAACTTATCTACCACC 59.444 47.826 0.00 0.00 0.00 4.61
4020 6968 3.131396 CGCATCAACTTATCTACCACCC 58.869 50.000 0.00 0.00 0.00 4.61
4021 6969 3.131396 GCATCAACTTATCTACCACCCG 58.869 50.000 0.00 0.00 0.00 5.28
4022 6970 3.181469 GCATCAACTTATCTACCACCCGA 60.181 47.826 0.00 0.00 0.00 5.14
4023 6971 4.682320 GCATCAACTTATCTACCACCCGAA 60.682 45.833 0.00 0.00 0.00 4.30
4024 6972 5.611374 CATCAACTTATCTACCACCCGAAT 58.389 41.667 0.00 0.00 0.00 3.34
4025 6973 5.687166 TCAACTTATCTACCACCCGAATT 57.313 39.130 0.00 0.00 0.00 2.17
4026 6974 6.057321 TCAACTTATCTACCACCCGAATTT 57.943 37.500 0.00 0.00 0.00 1.82
4027 6975 6.478129 TCAACTTATCTACCACCCGAATTTT 58.522 36.000 0.00 0.00 0.00 1.82
4028 6976 6.943718 TCAACTTATCTACCACCCGAATTTTT 59.056 34.615 0.00 0.00 0.00 1.94
4089 7037 2.275134 TTTTGCTGATCAGGTGCAGA 57.725 45.000 23.89 9.50 38.01 4.26
4090 7038 2.502142 TTTGCTGATCAGGTGCAGAT 57.498 45.000 23.89 0.00 38.01 2.90
4091 7039 1.746470 TTGCTGATCAGGTGCAGATG 58.254 50.000 23.89 0.00 38.01 2.90
4092 7040 0.906775 TGCTGATCAGGTGCAGATGA 59.093 50.000 23.89 3.40 34.06 2.92
4093 7041 1.134491 TGCTGATCAGGTGCAGATGAG 60.134 52.381 23.89 2.36 34.06 2.90
4094 7042 1.584175 CTGATCAGGTGCAGATGAGC 58.416 55.000 15.38 8.94 34.06 4.26
4095 7043 0.179702 TGATCAGGTGCAGATGAGCC 59.820 55.000 12.39 0.00 30.86 4.70
4096 7044 0.534652 GATCAGGTGCAGATGAGCCC 60.535 60.000 5.26 0.00 0.00 5.19
4097 7045 2.321263 ATCAGGTGCAGATGAGCCCG 62.321 60.000 6.88 0.00 32.32 6.13
4098 7046 3.790437 AGGTGCAGATGAGCCCGG 61.790 66.667 0.00 0.00 32.32 5.73
4099 7047 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
4111 7059 3.089874 CCCGGGCTCCAGGATGAA 61.090 66.667 8.08 0.00 39.69 2.57
4112 7060 2.455565 CCCGGGCTCCAGGATGAAT 61.456 63.158 8.08 0.00 39.69 2.57
4113 7061 1.533711 CCGGGCTCCAGGATGAATT 59.466 57.895 0.00 0.00 39.69 2.17
4114 7062 0.764890 CCGGGCTCCAGGATGAATTA 59.235 55.000 0.00 0.00 39.69 1.40
4115 7063 1.352352 CCGGGCTCCAGGATGAATTAT 59.648 52.381 0.00 0.00 39.69 1.28
4116 7064 2.616510 CCGGGCTCCAGGATGAATTATC 60.617 54.545 0.00 0.00 39.69 1.75
4131 7079 8.641498 GATGAATTATCCATGTCCTGGTTATT 57.359 34.615 0.00 0.00 46.08 1.40
4132 7080 9.739276 GATGAATTATCCATGTCCTGGTTATTA 57.261 33.333 0.00 0.00 46.08 0.98
4162 7110 8.564509 AATTTCTTCTCTCCTTCAGATTCTTG 57.435 34.615 0.00 0.00 0.00 3.02
4163 7111 6.924913 TTCTTCTCTCCTTCAGATTCTTGA 57.075 37.500 0.00 0.00 0.00 3.02
4164 7112 6.924913 TCTTCTCTCCTTCAGATTCTTGAA 57.075 37.500 0.00 0.00 35.83 2.69
4165 7113 7.493499 TCTTCTCTCCTTCAGATTCTTGAAT 57.507 36.000 0.00 0.00 36.55 2.57
4166 7114 8.601047 TCTTCTCTCCTTCAGATTCTTGAATA 57.399 34.615 0.00 0.00 36.55 1.75
4167 7115 8.474025 TCTTCTCTCCTTCAGATTCTTGAATAC 58.526 37.037 0.00 0.00 36.55 1.89
4168 7116 7.118496 TCTCTCCTTCAGATTCTTGAATACC 57.882 40.000 0.00 0.00 36.55 2.73
4169 7117 6.900186 TCTCTCCTTCAGATTCTTGAATACCT 59.100 38.462 0.00 0.00 36.55 3.08
4170 7118 6.882656 TCTCCTTCAGATTCTTGAATACCTG 58.117 40.000 0.00 1.67 36.55 4.00
4171 7119 6.441924 TCTCCTTCAGATTCTTGAATACCTGT 59.558 38.462 10.05 0.00 36.55 4.00
4172 7120 7.020827 TCCTTCAGATTCTTGAATACCTGTT 57.979 36.000 10.05 0.00 36.55 3.16
4248 7199 6.380095 AGAGAAGGATCGTTCTGTATGTAC 57.620 41.667 29.96 16.11 36.89 2.90
4378 7331 5.343249 ACAACATTTGCTGAACTCAGTTTC 58.657 37.500 8.46 0.00 45.45 2.78
4396 7349 8.608844 TCAGTTTCCTAATTCAAGAACTTCTC 57.391 34.615 0.00 0.00 0.00 2.87
4397 7350 7.661847 TCAGTTTCCTAATTCAAGAACTTCTCC 59.338 37.037 0.00 0.00 0.00 3.71
4498 7451 4.978099 TCTGTTCTGCTCTCCTTTTTCAT 58.022 39.130 0.00 0.00 0.00 2.57
4583 7536 2.746362 GAGACCAAGCAATCACCTCAAG 59.254 50.000 0.00 0.00 0.00 3.02
4698 7653 6.875972 AACCAGTAGATAGGTTGACAGAAT 57.124 37.500 0.00 0.00 45.91 2.40
4725 7680 6.954487 AGAAAGACCCAGTTTATTTTTCGT 57.046 33.333 0.00 0.00 0.00 3.85
4773 7729 4.304110 CACTGAGCGAAAGTGTTTAGGTA 58.696 43.478 7.94 0.00 40.17 3.08
4774 7730 4.929808 CACTGAGCGAAAGTGTTTAGGTAT 59.070 41.667 7.94 0.00 40.17 2.73
4775 7731 4.929808 ACTGAGCGAAAGTGTTTAGGTATG 59.070 41.667 0.00 0.00 0.00 2.39
4776 7732 5.142061 TGAGCGAAAGTGTTTAGGTATGA 57.858 39.130 0.00 0.00 0.00 2.15
4918 7874 5.718146 TGACTCTTCATCAATGACTGAGAC 58.282 41.667 20.11 16.36 38.67 3.36
4947 7903 3.293311 AACATTGTTGTCATGCTCAGC 57.707 42.857 0.15 0.00 34.06 4.26
4981 7937 1.305219 TGCAGAAAAATCGGCTCCGG 61.305 55.000 8.59 0.00 40.25 5.14
5172 8128 2.438951 TAGACGGCGTTGGGGTTGAC 62.439 60.000 16.19 0.00 0.00 3.18
5233 8189 1.470632 GCACAGAAGATCAGTCCGAGG 60.471 57.143 0.00 0.00 0.00 4.63
5350 8310 3.592865 GGGGATCCAGTAGATTCTCCTT 58.407 50.000 15.23 0.00 34.42 3.36
5551 8511 2.436115 GGGAGGGGAAGCGAAACG 60.436 66.667 0.00 0.00 0.00 3.60
5831 8793 2.040412 AGAAAGGAGGGAACGCAAGATT 59.960 45.455 0.00 0.00 43.62 2.40
6197 9166 3.266964 CAAGGTCACCCGTGCATG 58.733 61.111 0.00 0.00 33.37 4.06
6217 9187 5.297776 GCATGATGGTGCTAGATTTGTTAGT 59.702 40.000 0.00 0.00 41.82 2.24
6221 9191 9.632638 ATGATGGTGCTAGATTTGTTAGTTATT 57.367 29.630 0.00 0.00 0.00 1.40
6262 9233 8.523915 TTACCTCGTGTCCTCATTAGTTATTA 57.476 34.615 0.00 0.00 0.00 0.98
6369 9455 0.249031 ACAAGCTTGCAGTTTTCGGC 60.249 50.000 26.27 0.00 41.20 5.54
6421 9519 7.856145 AATTCTGAAGGCATTAGTTAGTCAG 57.144 36.000 0.00 0.00 33.82 3.51
6592 9738 6.373774 AGCAAGTCATCTCTTTTCTAATGTGG 59.626 38.462 0.00 0.00 0.00 4.17
6594 9740 7.308830 GCAAGTCATCTCTTTTCTAATGTGGTT 60.309 37.037 0.00 0.00 0.00 3.67
6671 9820 1.804748 GGTTTGACCTACCTTTCGCTG 59.195 52.381 0.00 0.00 34.73 5.18
6714 9863 4.414337 ACTTATCTTGACATCTCTGCCC 57.586 45.455 0.00 0.00 0.00 5.36
6811 9960 4.154918 GCGGAAGTGATCAAGAAGAAATGT 59.845 41.667 0.00 0.00 0.00 2.71
6883 10034 2.095718 GGGTTCTCTTGAATGCACGTTC 60.096 50.000 0.00 0.00 34.40 3.95
6906 10063 6.369629 TCCATGGTTTCTTTTGAAGTTCCTA 58.630 36.000 12.58 0.00 39.88 2.94
6915 10072 3.314541 TTGAAGTTCCTAACTCCTCGC 57.685 47.619 0.00 0.00 41.91 5.03
6929 10086 3.123804 CTCCTCGCAAATGCTAACGTAT 58.876 45.455 3.63 0.00 39.32 3.06
6986 10143 8.136165 AGTCTCCTTGCTACAATAAATACTACG 58.864 37.037 0.00 0.00 0.00 3.51
6993 10150 8.638685 TGCTACAATAAATACTACGGTTCTTC 57.361 34.615 0.00 0.00 0.00 2.87
7022 10179 3.403558 AGAAGCTTCTCCCCGCCC 61.404 66.667 23.49 0.00 29.94 6.13
7043 10200 2.531912 CGATTCGATGACCTGAAGTTCG 59.468 50.000 0.00 0.00 0.00 3.95
7046 10203 1.611977 TCGATGACCTGAAGTTCGTGT 59.388 47.619 0.00 0.00 0.00 4.49
7055 10212 3.342269 CTGAAGTTCGTGTCGTTTGTTG 58.658 45.455 0.00 0.00 0.00 3.33
7080 10238 3.813529 GCAACTAGCGAATTCTTGTGT 57.186 42.857 3.52 0.00 0.00 3.72
7082 10240 3.433615 GCAACTAGCGAATTCTTGTGTCT 59.566 43.478 3.52 0.00 0.00 3.41
7102 10260 7.754924 TGTGTCTTTTTCTTAAACTTTGCAGAG 59.245 33.333 2.03 2.03 0.00 3.35
7162 10329 7.674772 ACCTCTTGTGTTTAGATCTTACTAGGT 59.325 37.037 0.00 7.71 0.00 3.08
7163 10330 7.976734 CCTCTTGTGTTTAGATCTTACTAGGTG 59.023 40.741 0.00 0.85 0.00 4.00
7164 10331 8.645814 TCTTGTGTTTAGATCTTACTAGGTGA 57.354 34.615 0.00 0.00 0.00 4.02
7165 10332 8.521176 TCTTGTGTTTAGATCTTACTAGGTGAC 58.479 37.037 0.00 0.00 0.00 3.67
7166 10333 7.166691 TGTGTTTAGATCTTACTAGGTGACC 57.833 40.000 0.00 0.00 0.00 4.02
7167 10334 6.154021 TGTGTTTAGATCTTACTAGGTGACCC 59.846 42.308 0.00 0.00 0.00 4.46
7168 10335 5.359009 TGTTTAGATCTTACTAGGTGACCCG 59.641 44.000 0.00 0.00 35.12 5.28
7169 10336 2.946785 AGATCTTACTAGGTGACCCGG 58.053 52.381 0.00 0.00 35.12 5.73
7170 10337 2.244252 AGATCTTACTAGGTGACCCGGT 59.756 50.000 0.00 0.00 35.12 5.28
7171 10338 2.610438 TCTTACTAGGTGACCCGGTT 57.390 50.000 0.00 0.00 35.12 4.44
7172 10339 2.173519 TCTTACTAGGTGACCCGGTTG 58.826 52.381 0.00 0.00 35.12 3.77
7173 10340 0.609662 TTACTAGGTGACCCGGTTGC 59.390 55.000 0.00 0.00 35.12 4.17
7174 10341 1.597797 TACTAGGTGACCCGGTTGCG 61.598 60.000 0.00 0.00 35.12 4.85
7175 10342 4.382320 TAGGTGACCCGGTTGCGC 62.382 66.667 0.00 0.00 35.12 6.09
7179 10346 4.652131 TGACCCGGTTGCGCCAAT 62.652 61.111 4.18 0.00 36.97 3.16
7180 10347 4.114997 GACCCGGTTGCGCCAATG 62.115 66.667 4.18 0.00 36.97 2.82
7198 10365 1.616159 TGGCACAAAAAGCTACTCCC 58.384 50.000 0.00 0.00 31.92 4.30
7199 10366 1.144913 TGGCACAAAAAGCTACTCCCT 59.855 47.619 0.00 0.00 31.92 4.20
7200 10367 1.813178 GGCACAAAAAGCTACTCCCTC 59.187 52.381 0.00 0.00 0.00 4.30
7201 10368 1.813178 GCACAAAAAGCTACTCCCTCC 59.187 52.381 0.00 0.00 0.00 4.30
7202 10369 2.076863 CACAAAAAGCTACTCCCTCCG 58.923 52.381 0.00 0.00 0.00 4.63
7203 10370 1.697982 ACAAAAAGCTACTCCCTCCGT 59.302 47.619 0.00 0.00 0.00 4.69
7204 10371 2.105993 ACAAAAAGCTACTCCCTCCGTT 59.894 45.455 0.00 0.00 0.00 4.44
7205 10372 2.742589 CAAAAAGCTACTCCCTCCGTTC 59.257 50.000 0.00 0.00 0.00 3.95
7206 10373 0.531200 AAAGCTACTCCCTCCGTTCG 59.469 55.000 0.00 0.00 0.00 3.95
7207 10374 1.321074 AAGCTACTCCCTCCGTTCGG 61.321 60.000 4.74 4.74 0.00 4.30
7208 10375 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
7209 10376 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
7210 10377 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
7211 10378 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
7212 10379 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7213 10380 2.395619 ACTCCCTCCGTTCGGAATTAT 58.604 47.619 14.79 0.00 33.41 1.28
7214 10381 2.770232 ACTCCCTCCGTTCGGAATTATT 59.230 45.455 14.79 0.00 33.41 1.40
7215 10382 3.199289 ACTCCCTCCGTTCGGAATTATTT 59.801 43.478 14.79 0.00 33.41 1.40
7216 10383 3.537580 TCCCTCCGTTCGGAATTATTTG 58.462 45.455 14.79 1.97 33.41 2.32
7217 10384 3.054948 TCCCTCCGTTCGGAATTATTTGT 60.055 43.478 14.79 0.00 33.41 2.83
7218 10385 3.311596 CCCTCCGTTCGGAATTATTTGTC 59.688 47.826 14.79 0.00 33.41 3.18
7219 10386 3.000925 CCTCCGTTCGGAATTATTTGTCG 59.999 47.826 14.79 0.00 33.41 4.35
7220 10387 2.349275 TCCGTTCGGAATTATTTGTCGC 59.651 45.455 11.66 0.00 0.00 5.19
7221 10388 2.094575 CCGTTCGGAATTATTTGTCGCA 59.905 45.455 5.19 0.00 0.00 5.10
7222 10389 3.342269 CGTTCGGAATTATTTGTCGCAG 58.658 45.455 0.00 0.00 0.00 5.18
7223 10390 3.061563 CGTTCGGAATTATTTGTCGCAGA 59.938 43.478 0.00 0.00 0.00 4.26
7224 10391 4.434989 CGTTCGGAATTATTTGTCGCAGAA 60.435 41.667 0.00 0.00 39.69 3.02
7225 10392 5.387279 GTTCGGAATTATTTGTCGCAGAAA 58.613 37.500 0.00 0.00 39.69 2.52
7226 10393 5.811399 TCGGAATTATTTGTCGCAGAAAT 57.189 34.783 0.00 0.00 39.69 2.17
7227 10394 5.568482 TCGGAATTATTTGTCGCAGAAATG 58.432 37.500 0.00 0.00 39.69 2.32
7228 10395 4.734854 CGGAATTATTTGTCGCAGAAATGG 59.265 41.667 0.00 0.00 39.69 3.16
7229 10396 5.448496 CGGAATTATTTGTCGCAGAAATGGA 60.448 40.000 0.00 0.00 39.69 3.41
7230 10397 6.507023 GGAATTATTTGTCGCAGAAATGGAT 58.493 36.000 0.00 0.00 39.69 3.41
7231 10398 6.418819 GGAATTATTTGTCGCAGAAATGGATG 59.581 38.462 0.00 0.00 39.69 3.51
7232 10399 5.895636 TTATTTGTCGCAGAAATGGATGT 57.104 34.783 0.00 0.00 39.69 3.06
7233 10400 6.993786 TTATTTGTCGCAGAAATGGATGTA 57.006 33.333 0.00 0.00 39.69 2.29
7234 10401 7.566760 TTATTTGTCGCAGAAATGGATGTAT 57.433 32.000 0.00 0.00 39.69 2.29
7235 10402 5.484173 TTTGTCGCAGAAATGGATGTATC 57.516 39.130 0.00 0.00 39.69 2.24
7236 10403 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
7237 10404 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
7238 10405 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
7239 10406 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
7240 10407 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
7241 10408 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
7242 10409 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
7243 10410 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
7244 10411 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
7245 10412 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
7270 10437 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
7271 10438 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
7272 10439 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
7273 10440 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
7274 10441 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
7275 10442 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
7276 10443 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
7277 10444 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
7278 10445 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
7279 10446 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
7280 10447 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
7281 10448 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
7282 10449 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
7283 10450 6.094048 ACATCCATTTCCGAGACAAGTAATTG 59.906 38.462 0.45 0.45 0.00 2.32
7284 10451 4.394920 TCCATTTCCGAGACAAGTAATTGC 59.605 41.667 2.17 0.00 0.00 3.56
7285 10452 4.334443 CATTTCCGAGACAAGTAATTGCG 58.666 43.478 2.17 0.00 0.00 4.85
7286 10453 3.306917 TTCCGAGACAAGTAATTGCGA 57.693 42.857 2.17 0.00 0.00 5.10
7287 10454 3.306917 TCCGAGACAAGTAATTGCGAA 57.693 42.857 2.17 0.00 0.00 4.70
7288 10455 2.991190 TCCGAGACAAGTAATTGCGAAC 59.009 45.455 2.17 0.00 0.00 3.95
7289 10456 2.222508 CCGAGACAAGTAATTGCGAACG 60.223 50.000 2.17 4.43 0.00 3.95
7290 10457 2.222508 CGAGACAAGTAATTGCGAACGG 60.223 50.000 2.17 0.00 0.00 4.44
7291 10458 2.991190 GAGACAAGTAATTGCGAACGGA 59.009 45.455 2.17 0.00 0.00 4.69
7292 10459 2.993899 AGACAAGTAATTGCGAACGGAG 59.006 45.455 2.17 0.00 0.00 4.63
7293 10460 2.073816 ACAAGTAATTGCGAACGGAGG 58.926 47.619 2.17 0.00 0.00 4.30
7294 10461 1.396996 CAAGTAATTGCGAACGGAGGG 59.603 52.381 0.00 0.00 0.00 4.30
7295 10462 0.899720 AGTAATTGCGAACGGAGGGA 59.100 50.000 0.00 0.00 0.00 4.20
7296 10463 1.134788 AGTAATTGCGAACGGAGGGAG 60.135 52.381 0.00 0.00 0.00 4.30
7297 10464 0.899720 TAATTGCGAACGGAGGGAGT 59.100 50.000 0.00 0.00 0.00 3.85
7339 10506 5.313280 AGTGAGTAGGTAGGAGATGTAGG 57.687 47.826 0.00 0.00 0.00 3.18
7519 10700 1.063717 CCCCTAGTGCCATCAAACCAT 60.064 52.381 0.00 0.00 0.00 3.55
7702 10911 7.765695 TTGGCTCTTCTCAAGAACAAATAAT 57.234 32.000 0.00 0.00 37.02 1.28
7820 11040 6.313519 AGAAATGGTGCTACTGAATTAGGA 57.686 37.500 0.00 0.00 0.00 2.94
7973 11197 2.886523 ACAATGTGAAGCTGCAAAGCTA 59.113 40.909 0.00 0.00 45.54 3.32
8200 11437 9.912634 AATTCCAAGTCAAATGTAAACATACTG 57.087 29.630 0.00 0.00 35.10 2.74
8208 11445 9.769093 GTCAAATGTAAACATACTGTATGAACC 57.231 33.333 29.17 15.84 39.45 3.62
8209 11446 9.508642 TCAAATGTAAACATACTGTATGAACCA 57.491 29.630 29.17 19.70 39.45 3.67
8210 11447 9.773328 CAAATGTAAACATACTGTATGAACCAG 57.227 33.333 29.17 6.87 39.45 4.00
8219 11456 8.855110 ACATACTGTATGAACCAGAGAGAATAG 58.145 37.037 29.17 2.30 39.45 1.73
8262 11499 4.595762 ATGGATGCAAAATATGTGCTCC 57.404 40.909 11.71 14.04 42.69 4.70
8264 11501 2.287788 GGATGCAAAATATGTGCTCCGG 60.288 50.000 11.71 0.00 42.69 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 7.559897 AGGAAACTTTTAGAAGAATGTCCAACA 59.440 33.333 0.00 0.00 37.44 3.33
138 140 0.806492 GCTCGAGTTCCGGATTGACC 60.806 60.000 15.13 0.00 39.14 4.02
156 158 2.803155 TTCACTGGGTGCATCCGAGC 62.803 60.000 12.39 0.00 44.37 5.03
157 159 0.107508 ATTCACTGGGTGCATCCGAG 60.108 55.000 12.39 12.34 45.69 4.63
160 162 2.496942 CCATTCACTGGGTGCATCC 58.503 57.895 9.82 9.82 41.82 3.51
228 230 1.747355 CATGGGAGCATCTTGAACCAC 59.253 52.381 0.00 0.00 33.73 4.16
250 252 3.876320 ACAAAAATTTGCAAGGCGTTCAT 59.124 34.783 0.00 0.00 41.79 2.57
256 258 4.880886 ACTTCACAAAAATTTGCAAGGC 57.119 36.364 16.50 0.00 41.79 4.35
258 260 6.742264 GTCCAAACTTCACAAAAATTTGCAAG 59.258 34.615 0.00 10.15 41.79 4.01
259 261 6.606768 GTCCAAACTTCACAAAAATTTGCAA 58.393 32.000 5.82 0.00 41.79 4.08
309 311 3.065655 TCATGCCCGATTTTGCTTTTTG 58.934 40.909 0.00 0.00 0.00 2.44
353 355 1.102978 GCATATTTTGGCTGTCGGGT 58.897 50.000 0.00 0.00 0.00 5.28
391 393 9.918630 ATTTTGATGAAGTTTAGACATTTGAGG 57.081 29.630 0.00 0.00 0.00 3.86
416 418 6.222389 TCAAATGCGTGATTTCCTTGAAAAT 58.778 32.000 0.00 0.00 35.11 1.82
420 422 3.366273 GCTCAAATGCGTGATTTCCTTGA 60.366 43.478 0.00 0.00 31.41 3.02
423 425 2.161855 TGCTCAAATGCGTGATTTCCT 58.838 42.857 0.00 0.00 31.41 3.36
429 431 1.135603 GCAAGATGCTCAAATGCGTGA 60.136 47.619 0.00 0.00 40.96 4.35
460 462 6.090129 GGCATGAACAGTAAAATCGCTAAAA 58.910 36.000 0.00 0.00 0.00 1.52
557 559 4.354587 GCGTATAAGCACGTAAACTAGGT 58.645 43.478 5.73 0.00 43.79 3.08
586 588 1.335597 ACGTACGTCCATCACACACTG 60.336 52.381 16.72 0.00 0.00 3.66
626 628 3.140623 GGAGGGAGTACGTCTATCAGAC 58.859 54.545 0.00 0.00 41.71 3.51
642 644 9.262386 ATACACATAGTAAAAAGGACCGGAGGG 62.262 44.444 9.46 0.00 45.25 4.30
643 645 6.407752 ATACACATAGTAAAAAGGACCGGAGG 60.408 42.308 9.46 0.00 46.08 4.30
644 646 4.828829 ACACATAGTAAAAAGGACCGGAG 58.171 43.478 9.46 0.00 0.00 4.63
645 647 4.895668 ACACATAGTAAAAAGGACCGGA 57.104 40.909 9.46 0.00 0.00 5.14
646 648 8.199449 TCTAATACACATAGTAAAAAGGACCGG 58.801 37.037 0.00 0.00 36.05 5.28
647 649 9.760077 ATCTAATACACATAGTAAAAAGGACCG 57.240 33.333 0.00 0.00 36.05 4.79
661 663 7.402054 TGACCTGACCAAAATCTAATACACAT 58.598 34.615 0.00 0.00 0.00 3.21
791 793 8.674263 AAAAGTATCAATTCACAATGCCAAAA 57.326 26.923 0.00 0.00 0.00 2.44
895 900 5.783360 TCCCTCATGTCCTTTTTAGTCTGTA 59.217 40.000 0.00 0.00 0.00 2.74
896 901 4.597507 TCCCTCATGTCCTTTTTAGTCTGT 59.402 41.667 0.00 0.00 0.00 3.41
1018 1025 0.613777 GGCCTATAATGGTCGAGGGG 59.386 60.000 0.00 0.00 0.00 4.79
1065 1082 1.021920 GGCGCTTCAAGAGGGAGAAC 61.022 60.000 7.64 0.00 40.59 3.01
1306 1331 2.134287 GTAGATCCCTCGGCCAGCA 61.134 63.158 2.24 0.00 0.00 4.41
1478 1503 1.682257 GAGCTTGGTGAAGAGGGCT 59.318 57.895 0.00 0.00 0.00 5.19
1515 1540 2.671682 GAACAGAGGAGTGGGGGC 59.328 66.667 0.00 0.00 0.00 5.80
1526 1551 3.267483 GCAATTAACCCTAGCGAACAGA 58.733 45.455 0.00 0.00 0.00 3.41
1599 1736 4.621991 ACGCAGATCACATGATTAGGTAC 58.378 43.478 0.00 0.00 34.37 3.34
1603 1740 5.284864 ACAGTACGCAGATCACATGATTAG 58.715 41.667 0.00 0.00 34.37 1.73
1781 2915 7.767250 TTCACTACTCTACCATGGATAGATG 57.233 40.000 21.47 15.06 0.00 2.90
2092 3291 0.242017 GGCGGATTCAGGCATATTGC 59.758 55.000 5.51 0.00 44.08 3.56
2122 3321 2.041216 TGGATAGGAGTAGCGGCAGATA 59.959 50.000 1.45 0.00 0.00 1.98
2223 3422 4.115199 GGACCCGGCAGATGGCTT 62.115 66.667 0.00 0.00 44.01 4.35
2305 3504 3.055819 GGTTGTCACCTCAATCTGCTCTA 60.056 47.826 0.00 0.00 40.44 2.43
2397 3600 2.163412 TGGATTTATGTCCGTTGCTTGC 59.837 45.455 0.00 0.00 41.35 4.01
2445 3648 1.603455 CTTGTTGGTGGTGGGCGAT 60.603 57.895 0.00 0.00 0.00 4.58
2558 3761 1.084084 CCTCCCCCTAGGTTTCCCA 59.916 63.158 8.29 0.00 36.75 4.37
2573 3776 4.098807 GGACTAATCTCCTCACTTCACCTC 59.901 50.000 0.00 0.00 0.00 3.85
2921 4125 5.105752 AGAAACGCTTGATGTCAGAGATAC 58.894 41.667 0.00 0.00 0.00 2.24
2937 4141 1.362406 GCTGAGGCACCTAGAAACGC 61.362 60.000 0.00 0.00 38.54 4.84
3140 4365 2.925706 TGCAGCCCGGAACTGGTA 60.926 61.111 21.48 4.32 34.22 3.25
3150 4375 0.033781 TGCATTCAAAAGTGCAGCCC 59.966 50.000 0.00 0.00 45.60 5.19
3160 4385 7.448161 TGGTTAAGAGAGAAGAATGCATTCAAA 59.552 33.333 34.59 14.84 39.23 2.69
3373 6313 3.256136 AGAAGAACTAGGGAACAGTCACG 59.744 47.826 0.00 0.00 29.76 4.35
3376 6316 4.875561 ACAGAAGAACTAGGGAACAGTC 57.124 45.455 0.00 0.00 0.00 3.51
3388 6328 5.872070 CAGAGGGATAAGACAACAGAAGAAC 59.128 44.000 0.00 0.00 0.00 3.01
3434 6375 1.868997 CGTGACATTGAGTGGGCAC 59.131 57.895 0.00 0.00 35.30 5.01
3442 6383 0.684535 TCCTGAAGGCGTGACATTGA 59.315 50.000 0.00 0.00 34.44 2.57
3481 6423 3.003480 GGTTTACATCTCAAGCTTCGCT 58.997 45.455 0.00 0.00 42.56 4.93
3505 6453 5.531122 AACAGTACTTGTCTCAAGCTACA 57.469 39.130 9.06 0.00 39.73 2.74
3536 6484 0.694771 AGGTCAATCCAGAGCTTGCA 59.305 50.000 0.00 0.00 43.31 4.08
3537 6485 1.093159 CAGGTCAATCCAGAGCTTGC 58.907 55.000 0.00 0.00 43.31 4.01
3601 6549 1.135333 GGCAACCAAACCGAACAAGAA 59.865 47.619 0.00 0.00 0.00 2.52
3609 6557 1.659794 CTTCCTGGCAACCAAACCG 59.340 57.895 0.00 0.00 30.80 4.44
3648 6596 3.775654 CGTGGTGGCCTCCCTCTC 61.776 72.222 21.06 8.11 0.00 3.20
3658 6606 2.386661 ATACTGAAGAAGCGTGGTGG 57.613 50.000 0.00 0.00 0.00 4.61
3665 6613 9.103861 ACTTAGCAAATCTTATACTGAAGAAGC 57.896 33.333 0.00 0.00 38.89 3.86
3701 6649 4.473520 ATTCGCCGCACTCCCAGG 62.474 66.667 0.00 0.00 0.00 4.45
3702 6650 2.892425 GATTCGCCGCACTCCCAG 60.892 66.667 0.00 0.00 0.00 4.45
3703 6651 3.390521 AGATTCGCCGCACTCCCA 61.391 61.111 0.00 0.00 0.00 4.37
3704 6652 2.892425 CAGATTCGCCGCACTCCC 60.892 66.667 0.00 0.00 0.00 4.30
3705 6653 3.567797 GCAGATTCGCCGCACTCC 61.568 66.667 0.00 0.00 0.00 3.85
3706 6654 2.815211 TGCAGATTCGCCGCACTC 60.815 61.111 0.00 0.00 0.00 3.51
3714 6662 4.473520 AGCCCGGGTGCAGATTCG 62.474 66.667 24.63 0.00 0.00 3.34
3715 6663 2.514824 GAGCCCGGGTGCAGATTC 60.515 66.667 24.63 1.65 0.00 2.52
3716 6664 2.615227 GATGAGCCCGGGTGCAGATT 62.615 60.000 24.63 5.68 0.00 2.40
3717 6665 3.092511 ATGAGCCCGGGTGCAGAT 61.093 61.111 24.63 4.52 0.00 2.90
3718 6666 3.785859 GATGAGCCCGGGTGCAGA 61.786 66.667 24.63 1.93 0.00 4.26
3719 6667 3.790437 AGATGAGCCCGGGTGCAG 61.790 66.667 24.63 0.00 0.00 4.41
3720 6668 4.100084 CAGATGAGCCCGGGTGCA 62.100 66.667 24.63 20.72 0.00 4.57
3722 6670 4.100084 TGCAGATGAGCCCGGGTG 62.100 66.667 24.63 12.63 0.00 4.61
3723 6671 4.101448 GTGCAGATGAGCCCGGGT 62.101 66.667 24.63 9.10 0.00 5.28
3724 6672 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
3725 6673 4.864334 GGGTGCAGATGAGCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
3730 6678 4.827087 AGCGCGGGTGCAGATGAG 62.827 66.667 8.83 0.00 42.97 2.90
3731 6679 4.819761 GAGCGCGGGTGCAGATGA 62.820 66.667 8.83 0.00 42.97 2.92
3795 6743 8.057011 ACCTAATTATCTACCACCCGAATTTTT 58.943 33.333 0.00 0.00 0.00 1.94
3796 6744 7.501225 CACCTAATTATCTACCACCCGAATTTT 59.499 37.037 0.00 0.00 0.00 1.82
3797 6745 6.996282 CACCTAATTATCTACCACCCGAATTT 59.004 38.462 0.00 0.00 0.00 1.82
3798 6746 6.531021 CACCTAATTATCTACCACCCGAATT 58.469 40.000 0.00 0.00 0.00 2.17
3799 6747 5.512576 GCACCTAATTATCTACCACCCGAAT 60.513 44.000 0.00 0.00 0.00 3.34
3800 6748 4.202284 GCACCTAATTATCTACCACCCGAA 60.202 45.833 0.00 0.00 0.00 4.30
3801 6749 3.322828 GCACCTAATTATCTACCACCCGA 59.677 47.826 0.00 0.00 0.00 5.14
3802 6750 3.660865 GCACCTAATTATCTACCACCCG 58.339 50.000 0.00 0.00 0.00 5.28
3803 6751 3.070590 ACGCACCTAATTATCTACCACCC 59.929 47.826 0.00 0.00 0.00 4.61
3804 6752 4.056050 CACGCACCTAATTATCTACCACC 58.944 47.826 0.00 0.00 0.00 4.61
3805 6753 4.940463 TCACGCACCTAATTATCTACCAC 58.060 43.478 0.00 0.00 0.00 4.16
3806 6754 4.038763 CCTCACGCACCTAATTATCTACCA 59.961 45.833 0.00 0.00 0.00 3.25
3807 6755 4.038883 ACCTCACGCACCTAATTATCTACC 59.961 45.833 0.00 0.00 0.00 3.18
3808 6756 5.197682 ACCTCACGCACCTAATTATCTAC 57.802 43.478 0.00 0.00 0.00 2.59
3809 6757 5.506815 CGAACCTCACGCACCTAATTATCTA 60.507 44.000 0.00 0.00 0.00 1.98
3810 6758 4.694339 GAACCTCACGCACCTAATTATCT 58.306 43.478 0.00 0.00 0.00 1.98
3811 6759 3.489785 CGAACCTCACGCACCTAATTATC 59.510 47.826 0.00 0.00 0.00 1.75
3812 6760 3.454375 CGAACCTCACGCACCTAATTAT 58.546 45.455 0.00 0.00 0.00 1.28
3813 6761 2.883574 CGAACCTCACGCACCTAATTA 58.116 47.619 0.00 0.00 0.00 1.40
3814 6762 1.722011 CGAACCTCACGCACCTAATT 58.278 50.000 0.00 0.00 0.00 1.40
3815 6763 3.436001 CGAACCTCACGCACCTAAT 57.564 52.632 0.00 0.00 0.00 1.73
3816 6764 4.979204 CGAACCTCACGCACCTAA 57.021 55.556 0.00 0.00 0.00 2.69
3823 6771 1.135972 CATTTTGGAGCGAACCTCACG 60.136 52.381 0.00 0.00 42.62 4.35
3824 6772 1.401539 GCATTTTGGAGCGAACCTCAC 60.402 52.381 0.00 0.00 42.62 3.51
3825 6773 0.881118 GCATTTTGGAGCGAACCTCA 59.119 50.000 0.00 0.00 42.62 3.86
3826 6774 0.881118 TGCATTTTGGAGCGAACCTC 59.119 50.000 0.00 0.00 39.98 3.85
3827 6775 1.000274 GTTGCATTTTGGAGCGAACCT 60.000 47.619 0.00 0.00 0.00 3.50
3828 6776 1.000274 AGTTGCATTTTGGAGCGAACC 60.000 47.619 0.00 0.00 0.00 3.62
3829 6777 2.319472 GAGTTGCATTTTGGAGCGAAC 58.681 47.619 0.00 0.00 0.00 3.95
3830 6778 1.069296 CGAGTTGCATTTTGGAGCGAA 60.069 47.619 0.00 0.00 0.00 4.70
3831 6779 0.516877 CGAGTTGCATTTTGGAGCGA 59.483 50.000 0.00 0.00 0.00 4.93
3832 6780 0.238289 ACGAGTTGCATTTTGGAGCG 59.762 50.000 0.00 0.00 0.00 5.03
3833 6781 2.422276 AACGAGTTGCATTTTGGAGC 57.578 45.000 0.00 0.00 0.00 4.70
3834 6782 3.963665 TCAAACGAGTTGCATTTTGGAG 58.036 40.909 0.00 0.00 37.13 3.86
3835 6783 4.109050 GTTCAAACGAGTTGCATTTTGGA 58.891 39.130 0.00 0.00 37.13 3.53
3836 6784 3.862267 TGTTCAAACGAGTTGCATTTTGG 59.138 39.130 0.00 0.00 37.13 3.28
3837 6785 5.640218 ATGTTCAAACGAGTTGCATTTTG 57.360 34.783 0.00 0.00 37.13 2.44
3838 6786 6.312426 TCAAATGTTCAAACGAGTTGCATTTT 59.688 30.769 13.68 4.89 37.59 1.82
3839 6787 5.809562 TCAAATGTTCAAACGAGTTGCATTT 59.190 32.000 12.01 12.01 38.97 2.32
3840 6788 5.347342 TCAAATGTTCAAACGAGTTGCATT 58.653 33.333 0.00 0.00 37.13 3.56
3841 6789 4.930963 TCAAATGTTCAAACGAGTTGCAT 58.069 34.783 0.00 0.00 37.13 3.96
3842 6790 4.350346 CTCAAATGTTCAAACGAGTTGCA 58.650 39.130 0.00 0.00 37.13 4.08
3843 6791 3.180387 GCTCAAATGTTCAAACGAGTTGC 59.820 43.478 0.00 0.00 37.13 4.17
3844 6792 4.350346 TGCTCAAATGTTCAAACGAGTTG 58.650 39.130 0.00 0.00 38.71 3.16
3845 6793 4.630894 TGCTCAAATGTTCAAACGAGTT 57.369 36.364 0.00 0.00 0.00 3.01
3846 6794 4.096382 ACTTGCTCAAATGTTCAAACGAGT 59.904 37.500 0.00 0.00 0.00 4.18
3847 6795 4.601019 ACTTGCTCAAATGTTCAAACGAG 58.399 39.130 0.00 0.00 0.00 4.18
3848 6796 4.335315 AGACTTGCTCAAATGTTCAAACGA 59.665 37.500 0.00 0.00 0.00 3.85
3849 6797 4.438797 CAGACTTGCTCAAATGTTCAAACG 59.561 41.667 0.00 0.00 0.00 3.60
3850 6798 5.230726 CACAGACTTGCTCAAATGTTCAAAC 59.769 40.000 0.00 0.00 0.00 2.93
3851 6799 5.342433 CACAGACTTGCTCAAATGTTCAAA 58.658 37.500 0.00 0.00 0.00 2.69
3852 6800 4.734402 GCACAGACTTGCTCAAATGTTCAA 60.734 41.667 3.32 0.00 39.59 2.69
3853 6801 3.243168 GCACAGACTTGCTCAAATGTTCA 60.243 43.478 3.32 0.00 39.59 3.18
3854 6802 3.243168 TGCACAGACTTGCTCAAATGTTC 60.243 43.478 9.86 0.00 43.41 3.18
3855 6803 2.689471 TGCACAGACTTGCTCAAATGTT 59.311 40.909 9.86 0.00 43.41 2.71
3856 6804 2.300433 TGCACAGACTTGCTCAAATGT 58.700 42.857 9.86 0.00 43.41 2.71
3857 6805 3.358707 TTGCACAGACTTGCTCAAATG 57.641 42.857 9.86 0.00 43.41 2.32
3858 6806 4.389890 TTTTGCACAGACTTGCTCAAAT 57.610 36.364 9.86 0.00 43.41 2.32
3859 6807 3.865011 TTTTGCACAGACTTGCTCAAA 57.135 38.095 9.86 7.06 43.41 2.69
3860 6808 3.865011 TTTTTGCACAGACTTGCTCAA 57.135 38.095 9.86 2.78 43.41 3.02
3877 6825 3.958147 ACAGACCCCGATTTTGTCTTTTT 59.042 39.130 0.00 0.00 37.25 1.94
3878 6826 3.317993 CACAGACCCCGATTTTGTCTTTT 59.682 43.478 0.00 0.00 37.25 2.27
3879 6827 2.884639 CACAGACCCCGATTTTGTCTTT 59.115 45.455 0.00 0.00 37.25 2.52
3880 6828 2.105821 TCACAGACCCCGATTTTGTCTT 59.894 45.455 0.00 0.00 37.25 3.01
3881 6829 1.697432 TCACAGACCCCGATTTTGTCT 59.303 47.619 0.00 0.00 39.86 3.41
3882 6830 2.178912 TCACAGACCCCGATTTTGTC 57.821 50.000 0.00 0.00 0.00 3.18
3883 6831 2.649531 TTCACAGACCCCGATTTTGT 57.350 45.000 0.00 0.00 0.00 2.83
3884 6832 4.202111 ACTTTTTCACAGACCCCGATTTTG 60.202 41.667 0.00 0.00 0.00 2.44
3885 6833 3.958147 ACTTTTTCACAGACCCCGATTTT 59.042 39.130 0.00 0.00 0.00 1.82
3886 6834 3.562182 ACTTTTTCACAGACCCCGATTT 58.438 40.909 0.00 0.00 0.00 2.17
3887 6835 3.223674 ACTTTTTCACAGACCCCGATT 57.776 42.857 0.00 0.00 0.00 3.34
3888 6836 2.951229 ACTTTTTCACAGACCCCGAT 57.049 45.000 0.00 0.00 0.00 4.18
3889 6837 2.721425 AACTTTTTCACAGACCCCGA 57.279 45.000 0.00 0.00 0.00 5.14
3890 6838 3.881089 AGTAAACTTTTTCACAGACCCCG 59.119 43.478 0.00 0.00 0.00 5.73
3891 6839 4.643334 ACAGTAAACTTTTTCACAGACCCC 59.357 41.667 0.00 0.00 0.00 4.95
3892 6840 5.830000 ACAGTAAACTTTTTCACAGACCC 57.170 39.130 0.00 0.00 0.00 4.46
3893 6841 6.745907 GTGAACAGTAAACTTTTTCACAGACC 59.254 38.462 20.00 3.18 41.54 3.85
3894 6842 7.302524 TGTGAACAGTAAACTTTTTCACAGAC 58.697 34.615 22.04 7.34 43.92 3.51
3895 6843 7.441890 TGTGAACAGTAAACTTTTTCACAGA 57.558 32.000 22.04 9.70 43.92 3.41
3896 6844 8.424731 GTTTGTGAACAGTAAACTTTTTCACAG 58.575 33.333 23.36 0.00 46.36 3.66
3897 6845 8.138712 AGTTTGTGAACAGTAAACTTTTTCACA 58.861 29.630 22.04 22.04 45.39 3.58
3898 6846 8.424731 CAGTTTGTGAACAGTAAACTTTTTCAC 58.575 33.333 18.96 18.96 41.30 3.18
3899 6847 8.138712 ACAGTTTGTGAACAGTAAACTTTTTCA 58.861 29.630 11.65 1.45 41.30 2.69
3900 6848 8.515473 ACAGTTTGTGAACAGTAAACTTTTTC 57.485 30.769 11.65 0.00 41.30 2.29
3901 6849 8.880878 AACAGTTTGTGAACAGTAAACTTTTT 57.119 26.923 11.65 7.66 41.30 1.94
3902 6850 8.880878 AAACAGTTTGTGAACAGTAAACTTTT 57.119 26.923 0.00 10.08 41.30 2.27
3903 6851 8.760569 CAAAACAGTTTGTGAACAGTAAACTTT 58.239 29.630 0.00 6.16 41.30 2.66
3904 6852 8.138712 TCAAAACAGTTTGTGAACAGTAAACTT 58.861 29.630 0.00 5.03 43.90 2.66
3905 6853 7.593644 GTCAAAACAGTTTGTGAACAGTAAACT 59.406 33.333 0.00 9.67 43.90 2.66
3906 6854 7.148869 GGTCAAAACAGTTTGTGAACAGTAAAC 60.149 37.037 15.66 0.00 43.90 2.01
3907 6855 6.864165 GGTCAAAACAGTTTGTGAACAGTAAA 59.136 34.615 15.66 0.00 43.90 2.01
3908 6856 6.383415 GGTCAAAACAGTTTGTGAACAGTAA 58.617 36.000 15.66 0.00 43.90 2.24
3909 6857 5.106078 GGGTCAAAACAGTTTGTGAACAGTA 60.106 40.000 19.36 0.00 43.90 2.74
3910 6858 4.321675 GGGTCAAAACAGTTTGTGAACAGT 60.322 41.667 19.36 0.00 43.90 3.55
3911 6859 4.173256 GGGTCAAAACAGTTTGTGAACAG 58.827 43.478 19.36 1.19 43.90 3.16
3912 6860 3.366476 CGGGTCAAAACAGTTTGTGAACA 60.366 43.478 19.36 0.00 43.90 3.18
3913 6861 3.119779 TCGGGTCAAAACAGTTTGTGAAC 60.120 43.478 13.61 13.61 43.90 3.18
3914 6862 3.082548 TCGGGTCAAAACAGTTTGTGAA 58.917 40.909 0.00 0.00 43.90 3.18
3915 6863 2.712709 TCGGGTCAAAACAGTTTGTGA 58.287 42.857 0.00 3.41 43.90 3.58
3916 6864 3.708563 ATCGGGTCAAAACAGTTTGTG 57.291 42.857 0.00 1.09 43.90 3.33
3917 6865 4.081917 ACAAATCGGGTCAAAACAGTTTGT 60.082 37.500 0.00 0.00 43.90 2.83
3918 6866 4.429108 ACAAATCGGGTCAAAACAGTTTG 58.571 39.130 0.00 0.00 44.71 2.93
3919 6867 4.401202 AGACAAATCGGGTCAAAACAGTTT 59.599 37.500 0.00 0.00 37.74 2.66
3920 6868 3.951680 AGACAAATCGGGTCAAAACAGTT 59.048 39.130 0.00 0.00 37.74 3.16
3921 6869 3.551846 AGACAAATCGGGTCAAAACAGT 58.448 40.909 0.00 0.00 37.74 3.55
3922 6870 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
3923 6871 4.993029 AAAGACAAATCGGGTCAAAACA 57.007 36.364 0.00 0.00 37.74 2.83
3943 6891 2.203480 AGCAGGCCTCGGCAAAAA 60.203 55.556 16.78 0.00 44.11 1.94
3944 6892 2.672996 GAGCAGGCCTCGGCAAAA 60.673 61.111 16.78 0.00 44.11 2.44
3945 6893 3.907260 CTGAGCAGGCCTCGGCAAA 62.907 63.158 16.78 4.05 43.82 3.68
3946 6894 4.399395 CTGAGCAGGCCTCGGCAA 62.399 66.667 16.78 4.38 43.82 4.52
3948 6896 1.825281 ATATCTGAGCAGGCCTCGGC 61.825 60.000 0.00 4.07 45.00 5.54
3949 6897 0.246086 GATATCTGAGCAGGCCTCGG 59.754 60.000 0.00 0.00 46.45 4.63
3950 6898 0.246086 GGATATCTGAGCAGGCCTCG 59.754 60.000 0.00 0.00 43.82 4.63
3951 6899 1.346062 TGGATATCTGAGCAGGCCTC 58.654 55.000 0.00 0.00 41.15 4.70
3952 6900 1.811778 TTGGATATCTGAGCAGGCCT 58.188 50.000 0.00 0.00 0.00 5.19
3953 6901 2.645838 TTTGGATATCTGAGCAGGCC 57.354 50.000 2.05 0.00 0.00 5.19
3954 6902 3.748083 TCATTTGGATATCTGAGCAGGC 58.252 45.455 2.05 0.00 0.00 4.85
3955 6903 4.970711 ACTCATTTGGATATCTGAGCAGG 58.029 43.478 15.91 0.00 38.94 4.85
3956 6904 6.053650 TCAACTCATTTGGATATCTGAGCAG 58.946 40.000 15.91 10.63 38.94 4.24
3957 6905 5.993055 TCAACTCATTTGGATATCTGAGCA 58.007 37.500 15.91 0.00 38.94 4.26
3958 6906 6.932356 TTCAACTCATTTGGATATCTGAGC 57.068 37.500 15.91 0.00 38.94 4.26
3969 6917 4.386652 CCGCTCCAAAATTCAACTCATTTG 59.613 41.667 0.00 0.00 36.42 2.32
3970 6918 4.559153 CCGCTCCAAAATTCAACTCATTT 58.441 39.130 0.00 0.00 0.00 2.32
3971 6919 3.056607 CCCGCTCCAAAATTCAACTCATT 60.057 43.478 0.00 0.00 0.00 2.57
3972 6920 2.493278 CCCGCTCCAAAATTCAACTCAT 59.507 45.455 0.00 0.00 0.00 2.90
3973 6921 1.885887 CCCGCTCCAAAATTCAACTCA 59.114 47.619 0.00 0.00 0.00 3.41
3974 6922 1.402852 GCCCGCTCCAAAATTCAACTC 60.403 52.381 0.00 0.00 0.00 3.01
3975 6923 0.603065 GCCCGCTCCAAAATTCAACT 59.397 50.000 0.00 0.00 0.00 3.16
3976 6924 0.389817 GGCCCGCTCCAAAATTCAAC 60.390 55.000 0.00 0.00 0.00 3.18
3977 6925 0.541764 AGGCCCGCTCCAAAATTCAA 60.542 50.000 0.00 0.00 0.00 2.69
3978 6926 0.965363 GAGGCCCGCTCCAAAATTCA 60.965 55.000 0.00 0.00 0.00 2.57
3979 6927 0.965363 TGAGGCCCGCTCCAAAATTC 60.965 55.000 0.00 0.00 0.00 2.17
3980 6928 1.076549 TGAGGCCCGCTCCAAAATT 59.923 52.632 0.00 0.00 0.00 1.82
3981 6929 1.678970 GTGAGGCCCGCTCCAAAAT 60.679 57.895 0.00 0.00 0.00 1.82
3982 6930 2.282180 GTGAGGCCCGCTCCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
3983 6931 4.697756 CGTGAGGCCCGCTCCAAA 62.698 66.667 0.00 0.00 0.00 3.28
3990 6938 3.499737 GTTGATGCGTGAGGCCCG 61.500 66.667 0.00 0.00 42.61 6.13
3991 6939 0.392461 TAAGTTGATGCGTGAGGCCC 60.392 55.000 0.00 0.00 42.61 5.80
3992 6940 1.599542 GATAAGTTGATGCGTGAGGCC 59.400 52.381 0.00 0.00 42.61 5.19
3993 6941 2.555199 AGATAAGTTGATGCGTGAGGC 58.445 47.619 0.00 0.00 43.96 4.70
3994 6942 4.051922 GGTAGATAAGTTGATGCGTGAGG 58.948 47.826 0.00 0.00 0.00 3.86
3995 6943 4.504461 GTGGTAGATAAGTTGATGCGTGAG 59.496 45.833 0.00 0.00 0.00 3.51
3996 6944 4.430007 GTGGTAGATAAGTTGATGCGTGA 58.570 43.478 0.00 0.00 0.00 4.35
3997 6945 3.555956 GGTGGTAGATAAGTTGATGCGTG 59.444 47.826 0.00 0.00 0.00 5.34
3998 6946 3.431766 GGGTGGTAGATAAGTTGATGCGT 60.432 47.826 0.00 0.00 0.00 5.24
3999 6947 3.131396 GGGTGGTAGATAAGTTGATGCG 58.869 50.000 0.00 0.00 0.00 4.73
4000 6948 3.131396 CGGGTGGTAGATAAGTTGATGC 58.869 50.000 0.00 0.00 0.00 3.91
4001 6949 4.665833 TCGGGTGGTAGATAAGTTGATG 57.334 45.455 0.00 0.00 0.00 3.07
4002 6950 5.888982 ATTCGGGTGGTAGATAAGTTGAT 57.111 39.130 0.00 0.00 0.00 2.57
4003 6951 5.687166 AATTCGGGTGGTAGATAAGTTGA 57.313 39.130 0.00 0.00 0.00 3.18
4004 6952 6.753107 AAAATTCGGGTGGTAGATAAGTTG 57.247 37.500 0.00 0.00 0.00 3.16
4069 7017 2.585330 TCTGCACCTGATCAGCAAAAA 58.415 42.857 17.76 0.58 37.89 1.94
4070 7018 2.275134 TCTGCACCTGATCAGCAAAA 57.725 45.000 17.76 2.06 37.89 2.44
4071 7019 2.089201 CATCTGCACCTGATCAGCAAA 58.911 47.619 17.76 0.07 37.89 3.68
4072 7020 1.279846 TCATCTGCACCTGATCAGCAA 59.720 47.619 17.76 5.23 37.89 3.91
4073 7021 0.906775 TCATCTGCACCTGATCAGCA 59.093 50.000 17.76 12.28 36.72 4.41
4074 7022 1.584175 CTCATCTGCACCTGATCAGC 58.416 55.000 17.76 7.86 0.00 4.26
4075 7023 1.584175 GCTCATCTGCACCTGATCAG 58.416 55.000 16.24 16.24 0.00 2.90
4076 7024 0.179702 GGCTCATCTGCACCTGATCA 59.820 55.000 0.00 0.00 34.04 2.92
4077 7025 0.534652 GGGCTCATCTGCACCTGATC 60.535 60.000 0.00 0.00 34.04 2.92
4078 7026 1.530771 GGGCTCATCTGCACCTGAT 59.469 57.895 0.00 0.00 34.04 2.90
4079 7027 2.993008 GGGCTCATCTGCACCTGA 59.007 61.111 0.00 0.00 34.04 3.86
4080 7028 2.513204 CGGGCTCATCTGCACCTG 60.513 66.667 0.00 0.00 31.60 4.00
4081 7029 3.790437 CCGGGCTCATCTGCACCT 61.790 66.667 0.00 0.00 31.60 4.00
4082 7030 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
4095 7043 0.764890 TAATTCATCCTGGAGCCCGG 59.235 55.000 1.52 0.00 0.00 5.73
4096 7044 2.704572 GATAATTCATCCTGGAGCCCG 58.295 52.381 1.52 0.00 0.00 6.13
4136 7084 9.664332 CAAGAATCTGAAGGAGAGAAGAAATTA 57.336 33.333 0.00 0.00 32.80 1.40
4137 7085 8.381636 TCAAGAATCTGAAGGAGAGAAGAAATT 58.618 33.333 0.00 0.00 32.80 1.82
4138 7086 7.915930 TCAAGAATCTGAAGGAGAGAAGAAAT 58.084 34.615 0.00 0.00 32.80 2.17
4139 7087 7.308450 TCAAGAATCTGAAGGAGAGAAGAAA 57.692 36.000 0.00 0.00 32.80 2.52
4140 7088 6.924913 TCAAGAATCTGAAGGAGAGAAGAA 57.075 37.500 0.00 0.00 32.80 2.52
4141 7089 6.924913 TTCAAGAATCTGAAGGAGAGAAGA 57.075 37.500 0.00 0.00 32.80 2.87
4142 7090 7.710475 GGTATTCAAGAATCTGAAGGAGAGAAG 59.290 40.741 0.00 0.00 38.66 2.85
4143 7091 7.401493 AGGTATTCAAGAATCTGAAGGAGAGAA 59.599 37.037 0.00 0.00 38.66 2.87
4144 7092 6.900186 AGGTATTCAAGAATCTGAAGGAGAGA 59.100 38.462 0.00 0.00 38.66 3.10
4145 7093 6.985645 CAGGTATTCAAGAATCTGAAGGAGAG 59.014 42.308 0.00 0.00 38.66 3.20
4146 7094 6.441924 ACAGGTATTCAAGAATCTGAAGGAGA 59.558 38.462 14.69 0.00 38.66 3.71
4147 7095 6.648192 ACAGGTATTCAAGAATCTGAAGGAG 58.352 40.000 14.69 0.00 38.66 3.69
4148 7096 6.627087 ACAGGTATTCAAGAATCTGAAGGA 57.373 37.500 14.69 0.00 38.66 3.36
4149 7097 7.175641 ACAAACAGGTATTCAAGAATCTGAAGG 59.824 37.037 14.69 8.06 38.66 3.46
4150 7098 8.103948 ACAAACAGGTATTCAAGAATCTGAAG 57.896 34.615 14.69 8.52 38.66 3.02
4151 7099 8.463930 AACAAACAGGTATTCAAGAATCTGAA 57.536 30.769 14.69 0.00 39.56 3.02
4152 7100 7.719193 TGAACAAACAGGTATTCAAGAATCTGA 59.281 33.333 14.69 0.00 31.16 3.27
4153 7101 7.805071 GTGAACAAACAGGTATTCAAGAATCTG 59.195 37.037 0.00 4.58 33.09 2.90
4154 7102 7.502226 TGTGAACAAACAGGTATTCAAGAATCT 59.498 33.333 0.00 0.00 33.09 2.40
4155 7103 7.648142 TGTGAACAAACAGGTATTCAAGAATC 58.352 34.615 0.00 0.00 33.09 2.52
4156 7104 7.581213 TGTGAACAAACAGGTATTCAAGAAT 57.419 32.000 0.52 0.52 33.09 2.40
4157 7105 7.581213 ATGTGAACAAACAGGTATTCAAGAA 57.419 32.000 0.00 0.00 33.09 2.52
4158 7106 8.684386 TTATGTGAACAAACAGGTATTCAAGA 57.316 30.769 0.00 0.00 33.09 3.02
4321 7272 9.077885 AGCTTCAAAGTAAAACTGGAAATATCA 57.922 29.630 0.00 0.00 0.00 2.15
4343 7296 5.750067 CAGCAAATGTTGTAGTTGAAAGCTT 59.250 36.000 0.00 0.00 36.50 3.74
4344 7297 5.067674 TCAGCAAATGTTGTAGTTGAAAGCT 59.932 36.000 0.00 0.00 36.50 3.74
4378 7331 4.637977 GCAGGGAGAAGTTCTTGAATTAGG 59.362 45.833 6.88 0.00 0.00 2.69
4396 7349 1.066573 CCAGTACAACTCTGAGCAGGG 60.067 57.143 4.19 0.00 35.20 4.45
4397 7350 1.620819 ACCAGTACAACTCTGAGCAGG 59.379 52.381 4.19 0.00 35.20 4.85
4475 7428 4.978099 TGAAAAAGGAGAGCAGAACAGAT 58.022 39.130 0.00 0.00 0.00 2.90
4583 7536 5.335661 GGAATTGGTGTATTTCCACACTCAC 60.336 44.000 6.37 0.00 46.52 3.51
4698 7653 8.780249 CGAAAAATAAACTGGGTCTTTCTTCTA 58.220 33.333 0.00 0.00 0.00 2.10
4725 7680 4.339814 AGAGGACGCACCAATAAAACAAAA 59.660 37.500 2.21 0.00 42.04 2.44
4775 7731 3.668191 CGTTGTTGTGGCATTACAATGTC 59.332 43.478 20.06 0.00 42.02 3.06
4776 7732 3.316588 TCGTTGTTGTGGCATTACAATGT 59.683 39.130 23.98 0.00 42.02 2.71
4918 7874 0.881118 ACAACAATGTTAGGCGGCTG 59.119 50.000 23.55 6.95 35.91 4.85
4947 7903 0.792640 CTGCAGGCTACACGACAAAG 59.207 55.000 5.57 0.00 0.00 2.77
5135 8091 5.050769 CCGTCTACTTCAATCACATACATGC 60.051 44.000 0.00 0.00 0.00 4.06
5172 8128 0.761187 ACCTCCCGGACATCATGATG 59.239 55.000 29.95 29.95 44.15 3.07
5226 8182 2.182030 CTCCTTGTCGCCTCGGAC 59.818 66.667 0.00 0.00 37.45 4.79
5233 8189 1.739562 CACAGAGCCTCCTTGTCGC 60.740 63.158 0.00 0.00 0.00 5.19
5370 8330 1.688735 CAGCTGATAAGATCCCCGTCA 59.311 52.381 8.42 0.00 0.00 4.35
5551 8511 1.339929 ACCGTTTTGCTTCATCCAACC 59.660 47.619 0.00 0.00 0.00 3.77
5554 8514 3.810310 AAAACCGTTTTGCTTCATCCA 57.190 38.095 8.46 0.00 0.00 3.41
5786 8748 4.160439 TGGTCTGTAGCTTCATGTTCCTAG 59.840 45.833 0.00 0.00 0.00 3.02
5787 8749 4.093743 TGGTCTGTAGCTTCATGTTCCTA 58.906 43.478 0.00 0.00 0.00 2.94
5788 8750 2.906389 TGGTCTGTAGCTTCATGTTCCT 59.094 45.455 0.00 0.00 0.00 3.36
5789 8751 3.334583 TGGTCTGTAGCTTCATGTTCC 57.665 47.619 0.00 0.00 0.00 3.62
5831 8793 4.162320 CCTTGCTCAGGGTGACTATTCTTA 59.838 45.833 0.00 0.00 39.39 2.10
6221 9191 5.998981 ACGAGGTAAACCAAACATGTGAATA 59.001 36.000 0.00 0.00 38.89 1.75
6224 9194 3.562141 CACGAGGTAAACCAAACATGTGA 59.438 43.478 0.00 0.00 38.89 3.58
6262 9233 6.652481 CACTCAAATCCCGCTGAATATAATCT 59.348 38.462 0.00 0.00 0.00 2.40
6273 9355 2.086869 CACAATCACTCAAATCCCGCT 58.913 47.619 0.00 0.00 0.00 5.52
6329 9415 4.204799 GTTTCCTCAAGGTGTACTTTGGT 58.795 43.478 6.97 0.00 37.29 3.67
6421 9519 6.089954 GCTTTTAAGATGAAGGCATGTTTGAC 59.910 38.462 0.00 0.00 38.71 3.18
6479 9583 1.087202 ACGCACGCTCACTCACAAAA 61.087 50.000 0.00 0.00 0.00 2.44
6592 9738 9.425577 GTTAGATAAGGATGCAGGTAAGATAAC 57.574 37.037 0.00 0.00 0.00 1.89
6594 9740 8.958060 AGTTAGATAAGGATGCAGGTAAGATA 57.042 34.615 0.00 0.00 0.00 1.98
6632 9778 2.160813 ACCTTAAAAACGTATGCAGGCG 59.839 45.455 10.55 10.55 0.00 5.52
6671 9820 7.545965 TAAGTTGTCTTAAGCATCAAGCTCTAC 59.454 37.037 0.00 0.00 42.92 2.59
6714 9863 1.453379 CCTTGGCATCCTCCTGCAG 60.453 63.158 6.78 6.78 44.12 4.41
6811 9960 0.250510 TGGATGCGTTTGCTGGTGTA 60.251 50.000 0.00 0.00 43.34 2.90
6883 10034 5.535753 AGGAACTTCAAAAGAAACCATGG 57.464 39.130 11.19 11.19 27.25 3.66
6915 10072 4.451379 TCATCGCATACGTTAGCATTTG 57.549 40.909 11.65 6.20 41.18 2.32
6929 10086 0.101759 GGCTACCGTAGTTCATCGCA 59.898 55.000 7.40 0.00 0.00 5.10
6986 10143 2.897969 TCTGTACAGACCCAGAAGAACC 59.102 50.000 21.74 0.00 34.88 3.62
6993 10150 2.564947 AGAAGCTTCTGTACAGACCCAG 59.435 50.000 27.96 19.81 37.14 4.45
7022 10179 2.531912 CGAACTTCAGGTCATCGAATCG 59.468 50.000 0.00 0.00 35.65 3.34
7043 10200 2.483583 TGCATTCCAACAAACGACAC 57.516 45.000 0.00 0.00 0.00 3.67
7055 10212 4.142600 ACAAGAATTCGCTAGTTGCATTCC 60.143 41.667 0.00 0.00 43.06 3.01
7080 10238 9.174166 ACTACTCTGCAAAGTTTAAGAAAAAGA 57.826 29.630 0.00 0.00 0.00 2.52
7082 10240 8.952278 TCACTACTCTGCAAAGTTTAAGAAAAA 58.048 29.630 0.00 0.00 0.00 1.94
7102 10260 9.243637 CTACAGCTCTCAATTAGAATTCACTAC 57.756 37.037 8.44 0.00 32.46 2.73
7162 10329 4.652131 ATTGGCGCAACCGGGTCA 62.652 61.111 10.83 0.00 43.94 4.02
7163 10330 4.114997 CATTGGCGCAACCGGGTC 62.115 66.667 10.83 0.00 43.94 4.46
7175 10342 3.578688 GAGTAGCTTTTTGTGCCATTGG 58.421 45.455 0.00 0.00 0.00 3.16
7176 10343 3.578688 GGAGTAGCTTTTTGTGCCATTG 58.421 45.455 0.00 0.00 0.00 2.82
7177 10344 2.562738 GGGAGTAGCTTTTTGTGCCATT 59.437 45.455 0.00 0.00 0.00 3.16
7178 10345 2.171003 GGGAGTAGCTTTTTGTGCCAT 58.829 47.619 0.00 0.00 0.00 4.40
7179 10346 1.144913 AGGGAGTAGCTTTTTGTGCCA 59.855 47.619 0.00 0.00 0.00 4.92
7180 10347 1.813178 GAGGGAGTAGCTTTTTGTGCC 59.187 52.381 0.00 0.00 0.00 5.01
7181 10348 1.813178 GGAGGGAGTAGCTTTTTGTGC 59.187 52.381 0.00 0.00 0.00 4.57
7182 10349 2.076863 CGGAGGGAGTAGCTTTTTGTG 58.923 52.381 0.00 0.00 0.00 3.33
7183 10350 1.697982 ACGGAGGGAGTAGCTTTTTGT 59.302 47.619 0.00 0.00 0.00 2.83
7184 10351 2.474410 ACGGAGGGAGTAGCTTTTTG 57.526 50.000 0.00 0.00 0.00 2.44
7185 10352 2.612221 CGAACGGAGGGAGTAGCTTTTT 60.612 50.000 0.00 0.00 0.00 1.94
7186 10353 1.067071 CGAACGGAGGGAGTAGCTTTT 60.067 52.381 0.00 0.00 0.00 2.27
7187 10354 0.531200 CGAACGGAGGGAGTAGCTTT 59.469 55.000 0.00 0.00 0.00 3.51
7188 10355 1.321074 CCGAACGGAGGGAGTAGCTT 61.321 60.000 7.53 0.00 37.50 3.74
7189 10356 1.753463 CCGAACGGAGGGAGTAGCT 60.753 63.158 7.53 0.00 37.50 3.32
7190 10357 1.318158 TTCCGAACGGAGGGAGTAGC 61.318 60.000 15.34 0.00 46.06 3.58
7191 10358 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
7192 10359 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
7193 10360 1.856629 TAATTCCGAACGGAGGGAGT 58.143 50.000 15.34 4.12 46.06 3.85
7194 10361 3.470645 AATAATTCCGAACGGAGGGAG 57.529 47.619 15.34 0.00 46.06 4.30
7195 10362 3.054948 ACAAATAATTCCGAACGGAGGGA 60.055 43.478 15.34 2.49 46.06 4.20
7196 10363 3.275999 ACAAATAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
7197 10364 3.000925 CGACAAATAATTCCGAACGGAGG 59.999 47.826 15.34 4.52 46.06 4.30
7198 10365 3.543460 GCGACAAATAATTCCGAACGGAG 60.543 47.826 15.34 5.60 46.06 4.63
7199 10366 2.349275 GCGACAAATAATTCCGAACGGA 59.651 45.455 12.04 12.04 43.52 4.69
7200 10367 2.094575 TGCGACAAATAATTCCGAACGG 59.905 45.455 6.94 6.94 0.00 4.44
7201 10368 3.061563 TCTGCGACAAATAATTCCGAACG 59.938 43.478 0.00 0.00 0.00 3.95
7202 10369 4.593597 TCTGCGACAAATAATTCCGAAC 57.406 40.909 0.00 0.00 0.00 3.95
7203 10370 5.614923 TTTCTGCGACAAATAATTCCGAA 57.385 34.783 0.00 0.00 0.00 4.30
7204 10371 5.448496 CCATTTCTGCGACAAATAATTCCGA 60.448 40.000 0.00 0.00 0.00 4.55
7205 10372 4.734854 CCATTTCTGCGACAAATAATTCCG 59.265 41.667 0.00 0.00 0.00 4.30
7206 10373 5.890334 TCCATTTCTGCGACAAATAATTCC 58.110 37.500 0.00 0.00 0.00 3.01
7207 10374 6.974622 ACATCCATTTCTGCGACAAATAATTC 59.025 34.615 0.00 0.00 0.00 2.17
7208 10375 6.866480 ACATCCATTTCTGCGACAAATAATT 58.134 32.000 0.00 0.00 0.00 1.40
7209 10376 6.455360 ACATCCATTTCTGCGACAAATAAT 57.545 33.333 0.00 0.00 0.00 1.28
7210 10377 5.895636 ACATCCATTTCTGCGACAAATAA 57.104 34.783 0.00 0.00 0.00 1.40
7211 10378 6.992123 AGATACATCCATTTCTGCGACAAATA 59.008 34.615 0.00 0.00 0.00 1.40
7212 10379 5.824624 AGATACATCCATTTCTGCGACAAAT 59.175 36.000 0.00 0.00 0.00 2.32
7213 10380 5.185454 AGATACATCCATTTCTGCGACAAA 58.815 37.500 0.00 0.00 0.00 2.83
7214 10381 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
7215 10382 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
7216 10383 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
7217 10384 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
7218 10385 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
7219 10386 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
7244 10411 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
7245 10412 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
7246 10413 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
7247 10414 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
7248 10415 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
7249 10416 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
7250 10417 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
7251 10418 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
7252 10419 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
7253 10420 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
7254 10421 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
7255 10422 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
7256 10423 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
7257 10424 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
7258 10425 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
7259 10426 6.489675 CAATTACTTGTCTCGGAAATGGATG 58.510 40.000 0.00 0.00 0.00 3.51
7260 10427 5.066505 GCAATTACTTGTCTCGGAAATGGAT 59.933 40.000 0.00 0.00 34.69 3.41
7261 10428 4.394920 GCAATTACTTGTCTCGGAAATGGA 59.605 41.667 0.00 0.00 34.69 3.41
7262 10429 4.662145 GCAATTACTTGTCTCGGAAATGG 58.338 43.478 0.00 0.00 34.69 3.16
7263 10430 4.092821 TCGCAATTACTTGTCTCGGAAATG 59.907 41.667 0.00 0.00 34.69 2.32
7264 10431 4.250464 TCGCAATTACTTGTCTCGGAAAT 58.750 39.130 0.00 0.00 34.69 2.17
7265 10432 3.655486 TCGCAATTACTTGTCTCGGAAA 58.345 40.909 0.00 0.00 34.69 3.13
7266 10433 3.306917 TCGCAATTACTTGTCTCGGAA 57.693 42.857 0.00 0.00 34.69 4.30
7267 10434 2.991190 GTTCGCAATTACTTGTCTCGGA 59.009 45.455 0.00 0.00 34.69 4.55
7268 10435 2.222508 CGTTCGCAATTACTTGTCTCGG 60.223 50.000 0.00 0.00 34.69 4.63
7269 10436 2.222508 CCGTTCGCAATTACTTGTCTCG 60.223 50.000 0.00 0.00 34.69 4.04
7270 10437 2.991190 TCCGTTCGCAATTACTTGTCTC 59.009 45.455 0.00 0.00 34.69 3.36
7271 10438 2.993899 CTCCGTTCGCAATTACTTGTCT 59.006 45.455 0.00 0.00 34.69 3.41
7272 10439 2.093783 CCTCCGTTCGCAATTACTTGTC 59.906 50.000 0.00 0.00 34.69 3.18
7273 10440 2.073816 CCTCCGTTCGCAATTACTTGT 58.926 47.619 0.00 0.00 34.69 3.16
7274 10441 1.396996 CCCTCCGTTCGCAATTACTTG 59.603 52.381 0.00 0.00 35.36 3.16
7275 10442 1.276989 TCCCTCCGTTCGCAATTACTT 59.723 47.619 0.00 0.00 0.00 2.24
7276 10443 0.899720 TCCCTCCGTTCGCAATTACT 59.100 50.000 0.00 0.00 0.00 2.24
7277 10444 1.287425 CTCCCTCCGTTCGCAATTAC 58.713 55.000 0.00 0.00 0.00 1.89
7278 10445 0.899720 ACTCCCTCCGTTCGCAATTA 59.100 50.000 0.00 0.00 0.00 1.40
7279 10446 0.899720 TACTCCCTCCGTTCGCAATT 59.100 50.000 0.00 0.00 0.00 2.32
7280 10447 0.460311 CTACTCCCTCCGTTCGCAAT 59.540 55.000 0.00 0.00 0.00 3.56
7281 10448 0.896940 ACTACTCCCTCCGTTCGCAA 60.897 55.000 0.00 0.00 0.00 4.85
7282 10449 0.896940 AACTACTCCCTCCGTTCGCA 60.897 55.000 0.00 0.00 0.00 5.10
7283 10450 1.065251 CTAACTACTCCCTCCGTTCGC 59.935 57.143 0.00 0.00 0.00 4.70
7284 10451 2.636830 TCTAACTACTCCCTCCGTTCG 58.363 52.381 0.00 0.00 0.00 3.95
7285 10452 3.181488 GCTTCTAACTACTCCCTCCGTTC 60.181 52.174 0.00 0.00 0.00 3.95
7286 10453 2.759535 GCTTCTAACTACTCCCTCCGTT 59.240 50.000 0.00 0.00 0.00 4.44
7287 10454 2.291411 TGCTTCTAACTACTCCCTCCGT 60.291 50.000 0.00 0.00 0.00 4.69
7288 10455 2.376109 TGCTTCTAACTACTCCCTCCG 58.624 52.381 0.00 0.00 0.00 4.63
7289 10456 4.162509 ACATTGCTTCTAACTACTCCCTCC 59.837 45.833 0.00 0.00 0.00 4.30
7290 10457 5.346181 ACATTGCTTCTAACTACTCCCTC 57.654 43.478 0.00 0.00 0.00 4.30
7291 10458 5.763876 AACATTGCTTCTAACTACTCCCT 57.236 39.130 0.00 0.00 0.00 4.20
7292 10459 6.641474 ACTAACATTGCTTCTAACTACTCCC 58.359 40.000 0.00 0.00 0.00 4.30
7293 10460 8.468399 ACTACTAACATTGCTTCTAACTACTCC 58.532 37.037 0.00 0.00 0.00 3.85
7294 10461 9.291664 CACTACTAACATTGCTTCTAACTACTC 57.708 37.037 0.00 0.00 0.00 2.59
7295 10462 9.021807 TCACTACTAACATTGCTTCTAACTACT 57.978 33.333 0.00 0.00 0.00 2.57
7296 10463 9.291664 CTCACTACTAACATTGCTTCTAACTAC 57.708 37.037 0.00 0.00 0.00 2.73
7297 10464 9.021807 ACTCACTACTAACATTGCTTCTAACTA 57.978 33.333 0.00 0.00 0.00 2.24
7339 10506 8.408601 ACAATCCACATTGCATTATCTTTCTAC 58.591 33.333 0.00 0.00 43.03 2.59
7413 10580 7.491696 ACTGTATTTCTGTTAACCGATCTAAGC 59.508 37.037 2.48 0.00 0.00 3.09
7519 10700 4.953579 GGGAGTTGGTGGCAAAGAATTATA 59.046 41.667 0.00 0.00 0.00 0.98
7711 10920 9.629878 TTTGAATTAGGTCACTTTAGTACCAAA 57.370 29.630 0.00 0.00 35.64 3.28
7973 11197 4.201950 GCATTCAGGAATATGTTGCGTCTT 60.202 41.667 0.00 0.00 0.00 3.01
8156 11393 6.065374 TGGAATTGGCTGTACTTTTGTTCTA 58.935 36.000 0.00 0.00 0.00 2.10
8219 11456 8.632679 TCCATTGCTTATTTAACCATTGAGATC 58.367 33.333 0.00 0.00 0.00 2.75
8262 11499 4.941873 AGTTTCTAAATAAGTTCAGCCCCG 59.058 41.667 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.