Multiple sequence alignment - TraesCS5D01G259600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G259600 chr5D 100.000 7231 0 0 1 7231 365738472 365731242 0.000000e+00 13354
1 TraesCS5D01G259600 chr5D 84.768 151 16 2 2939 3082 204323387 204323237 2.100000e-30 145
2 TraesCS5D01G259600 chr5D 83.660 153 15 6 2942 3085 528717428 528717277 1.270000e-27 135
3 TraesCS5D01G259600 chr5B 93.173 3545 158 30 1461 4958 432271048 432267541 0.000000e+00 5129
4 TraesCS5D01G259600 chr5B 93.196 2278 98 24 4988 7231 432267542 432265288 0.000000e+00 3295
5 TraesCS5D01G259600 chr5B 93.103 493 22 6 939 1429 432271734 432271252 0.000000e+00 712
6 TraesCS5D01G259600 chr5B 86.093 151 14 2 2939 3082 208523454 208523304 9.710000e-34 156
7 TraesCS5D01G259600 chr5B 92.500 80 6 0 836 915 432276464 432276385 1.650000e-21 115
8 TraesCS5D01G259600 chr5A 95.059 2469 89 13 1547 3987 467402642 467400179 0.000000e+00 3853
9 TraesCS5D01G259600 chr5A 93.256 1557 79 10 4975 6517 467398324 467396780 0.000000e+00 2270
10 TraesCS5D01G259600 chr5A 96.784 995 30 2 3986 4979 467400018 467399025 0.000000e+00 1659
11 TraesCS5D01G259600 chr5A 88.627 721 51 11 118 836 467580540 467579849 0.000000e+00 848
12 TraesCS5D01G259600 chr5A 94.635 466 14 5 966 1429 467403145 467402689 0.000000e+00 712
13 TraesCS5D01G259600 chr5A 91.957 373 21 3 6853 7224 467396352 467395988 1.390000e-141 514
14 TraesCS5D01G259600 chr5A 89.313 262 26 2 6596 6856 467396771 467396511 1.950000e-85 327
15 TraesCS5D01G259600 chr5A 83.482 224 37 0 1620 1843 166882334 166882111 7.350000e-50 209
16 TraesCS5D01G259600 chr5A 85.034 147 12 5 2942 3079 35260222 35260367 2.720000e-29 141
17 TraesCS5D01G259600 chr5A 83.660 153 15 6 2942 3085 656872435 656872284 1.270000e-27 135
18 TraesCS5D01G259600 chr5A 95.652 69 3 0 1 69 467580711 467580643 2.130000e-20 111
19 TraesCS5D01G259600 chr5A 95.652 46 2 0 2117 2162 472477376 472477421 2.800000e-09 75
20 TraesCS5D01G259600 chr2D 84.509 723 89 11 131 836 324430092 324430808 0.000000e+00 693
21 TraesCS5D01G259600 chr2D 85.403 459 55 4 388 836 7158779 7158323 3.950000e-127 466
22 TraesCS5D01G259600 chr2D 76.093 732 137 22 117 830 359935373 359936084 1.490000e-91 348
23 TraesCS5D01G259600 chr2D 85.443 158 13 1 1856 2003 24751213 24751370 9.710000e-34 156
24 TraesCS5D01G259600 chr4A 84.160 726 96 10 121 831 482871286 482870565 0.000000e+00 686
25 TraesCS5D01G259600 chr2B 83.747 726 99 14 120 836 176311009 176311724 0.000000e+00 669
26 TraesCS5D01G259600 chr2B 81.903 746 101 21 120 836 585196366 585197106 3.730000e-167 599
27 TraesCS5D01G259600 chr2B 85.637 557 65 5 1718 2262 220192848 220193401 8.140000e-159 571
28 TraesCS5D01G259600 chr2B 79.652 747 117 26 120 836 476555848 476555107 8.370000e-139 505
29 TraesCS5D01G259600 chr2B 85.714 147 10 6 2942 3079 91043386 91043242 2.100000e-30 145
30 TraesCS5D01G259600 chr1D 82.282 745 102 17 120 836 482906710 482905968 1.030000e-172 617
31 TraesCS5D01G259600 chr4D 89.528 487 39 9 1998 2479 317190590 317190111 2.230000e-169 606
32 TraesCS5D01G259600 chr4D 84.177 158 15 4 1856 2003 480150131 480150288 2.100000e-30 145
33 TraesCS5D01G259600 chr1A 81.830 754 101 25 117 836 579224646 579225397 1.040000e-167 601
34 TraesCS5D01G259600 chr1A 82.911 158 16 2 1856 2003 12993464 12993308 1.640000e-26 132
35 TraesCS5D01G259600 chr6B 86.355 557 58 6 1718 2262 195464615 195465165 6.250000e-165 592
36 TraesCS5D01G259600 chr6B 85.663 558 64 6 1718 2262 201226716 201227270 2.260000e-159 573
37 TraesCS5D01G259600 chr3A 83.156 659 88 19 120 762 671005031 671005682 1.350000e-161 580
38 TraesCS5D01G259600 chr3A 86.275 357 47 2 481 836 149033191 149032836 3.160000e-103 387
39 TraesCS5D01G259600 chr3A 83.628 226 35 2 1620 1843 267365393 267365168 2.040000e-50 211
40 TraesCS5D01G259600 chr3A 83.186 226 36 2 1620 1843 302495249 302495024 9.510000e-49 206
41 TraesCS5D01G259600 chr3A 90.000 100 8 2 1856 1955 644717561 644717658 2.120000e-25 128
42 TraesCS5D01G259600 chr7B 81.107 741 102 21 124 831 328521859 328522594 6.340000e-155 558
43 TraesCS5D01G259600 chr6A 86.902 481 54 9 360 836 545103246 545102771 1.380000e-146 531
44 TraesCS5D01G259600 chr6A 80.000 370 36 16 1803 2160 535382507 535382850 9.380000e-59 239
45 TraesCS5D01G259600 chr6A 85.034 147 17 4 2947 3088 151462049 151462195 2.100000e-30 145
46 TraesCS5D01G259600 chr6D 83.396 536 68 10 122 639 52041668 52042200 1.830000e-130 477
47 TraesCS5D01G259600 chr6D 84.804 408 45 7 1718 2113 406646447 406646045 1.890000e-105 394
48 TraesCS5D01G259600 chr6D 83.514 370 53 6 120 483 335779116 335779483 8.990000e-89 339
49 TraesCS5D01G259600 chr4B 83.641 379 51 8 117 487 570075700 570076075 5.370000e-91 346
50 TraesCS5D01G259600 chr3B 86.161 224 31 0 1620 1843 158633089 158633312 7.250000e-60 243
51 TraesCS5D01G259600 chr3B 83.929 224 36 0 1620 1843 678846062 678845839 1.580000e-51 215
52 TraesCS5D01G259600 chr3B 87.407 135 13 4 2942 3074 475993837 475993705 1.260000e-32 152
53 TraesCS5D01G259600 chrUn 95.652 46 2 0 2117 2162 137775813 137775858 2.800000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G259600 chr5D 365731242 365738472 7230 True 13354.000000 13354 100.000000 1 7231 1 chr5D.!!$R2 7230
1 TraesCS5D01G259600 chr5B 432265288 432271734 6446 True 3045.333333 5129 93.157333 939 7231 3 chr5B.!!$R3 6292
2 TraesCS5D01G259600 chr5A 467395988 467403145 7157 True 1555.833333 3853 93.500667 966 7224 6 chr5A.!!$R3 6258
3 TraesCS5D01G259600 chr5A 467579849 467580711 862 True 479.500000 848 92.139500 1 836 2 chr5A.!!$R4 835
4 TraesCS5D01G259600 chr2D 324430092 324430808 716 False 693.000000 693 84.509000 131 836 1 chr2D.!!$F2 705
5 TraesCS5D01G259600 chr2D 359935373 359936084 711 False 348.000000 348 76.093000 117 830 1 chr2D.!!$F3 713
6 TraesCS5D01G259600 chr4A 482870565 482871286 721 True 686.000000 686 84.160000 121 831 1 chr4A.!!$R1 710
7 TraesCS5D01G259600 chr2B 176311009 176311724 715 False 669.000000 669 83.747000 120 836 1 chr2B.!!$F1 716
8 TraesCS5D01G259600 chr2B 585196366 585197106 740 False 599.000000 599 81.903000 120 836 1 chr2B.!!$F3 716
9 TraesCS5D01G259600 chr2B 220192848 220193401 553 False 571.000000 571 85.637000 1718 2262 1 chr2B.!!$F2 544
10 TraesCS5D01G259600 chr2B 476555107 476555848 741 True 505.000000 505 79.652000 120 836 1 chr2B.!!$R2 716
11 TraesCS5D01G259600 chr1D 482905968 482906710 742 True 617.000000 617 82.282000 120 836 1 chr1D.!!$R1 716
12 TraesCS5D01G259600 chr1A 579224646 579225397 751 False 601.000000 601 81.830000 117 836 1 chr1A.!!$F1 719
13 TraesCS5D01G259600 chr6B 195464615 195465165 550 False 592.000000 592 86.355000 1718 2262 1 chr6B.!!$F1 544
14 TraesCS5D01G259600 chr6B 201226716 201227270 554 False 573.000000 573 85.663000 1718 2262 1 chr6B.!!$F2 544
15 TraesCS5D01G259600 chr3A 671005031 671005682 651 False 580.000000 580 83.156000 120 762 1 chr3A.!!$F2 642
16 TraesCS5D01G259600 chr7B 328521859 328522594 735 False 558.000000 558 81.107000 124 831 1 chr7B.!!$F1 707
17 TraesCS5D01G259600 chr6D 52041668 52042200 532 False 477.000000 477 83.396000 122 639 1 chr6D.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.033642 GACCTACTAAGCGGATGGCC 59.966 60.000 0.00 0.00 45.17 5.36 F
1411 1555 0.102300 TGATCCCGTACAGCATGACG 59.898 55.000 0.00 0.00 39.69 4.35 F
1430 1574 1.202256 CGTGGAACTGTATCGCTAGCA 60.202 52.381 16.45 2.17 31.75 3.49 F
1433 1577 2.035961 TGGAACTGTATCGCTAGCATCC 59.964 50.000 16.45 8.79 0.00 3.51 F
3217 3583 0.749649 TTGTGGCCTGAACGCATTTT 59.250 45.000 3.32 0.00 0.00 1.82 F
5108 6380 0.251742 CATGGAGTTTGGCTTCCCCA 60.252 55.000 0.00 0.00 43.51 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2121 0.179004 ACTCCATTCCGTTTGGCACA 60.179 50.000 0.00 0.00 34.06 4.57 R
2616 2969 3.552604 AACGTCGCAAAATGCATTAGT 57.447 38.095 13.39 0.54 45.36 2.24 R
2618 2971 4.159857 GGTAAACGTCGCAAAATGCATTA 58.840 39.130 13.39 0.00 45.36 1.90 R
3273 3639 6.001449 ACCTAGCAATAGAAATACAGGCAA 57.999 37.500 0.00 0.00 0.00 4.52 R
5167 6453 0.039256 GCATGCAAGAGAAACGGCAA 60.039 50.000 14.21 0.00 37.27 4.52 R
7046 8516 0.748005 TTTGCGCCTTGGGATCTAGC 60.748 55.000 4.18 0.00 0.00 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.143684 GATTCCTTGCTGATGGGCCTA 59.856 52.381 4.53 0.00 0.00 3.93
31 32 0.397957 TGATGGGCCTACTAAGCGGA 60.398 55.000 4.53 0.00 0.00 5.54
69 70 4.800993 CGCTCAGAACTTAATTCGATCACT 59.199 41.667 0.00 0.00 42.69 3.41
71 72 6.472486 CGCTCAGAACTTAATTCGATCACTAA 59.528 38.462 0.00 0.00 42.69 2.24
72 73 7.168302 CGCTCAGAACTTAATTCGATCACTAAT 59.832 37.037 0.00 0.00 42.69 1.73
73 74 8.272176 GCTCAGAACTTAATTCGATCACTAATG 58.728 37.037 0.00 0.00 42.69 1.90
74 75 9.521503 CTCAGAACTTAATTCGATCACTAATGA 57.478 33.333 0.00 0.00 42.69 2.57
75 76 9.302345 TCAGAACTTAATTCGATCACTAATGAC 57.698 33.333 0.00 0.00 42.69 3.06
76 77 8.543774 CAGAACTTAATTCGATCACTAATGACC 58.456 37.037 0.00 0.00 42.69 4.02
77 78 8.478877 AGAACTTAATTCGATCACTAATGACCT 58.521 33.333 0.00 0.00 42.69 3.85
78 79 9.745880 GAACTTAATTCGATCACTAATGACCTA 57.254 33.333 0.00 0.00 37.79 3.08
79 80 9.530633 AACTTAATTCGATCACTAATGACCTAC 57.469 33.333 0.00 0.00 37.79 3.18
80 81 8.915036 ACTTAATTCGATCACTAATGACCTACT 58.085 33.333 0.00 0.00 37.79 2.57
84 85 6.315091 TCGATCACTAATGACCTACTAAGC 57.685 41.667 0.00 0.00 37.79 3.09
86 87 4.913335 TCACTAATGACCTACTAAGCGG 57.087 45.455 0.00 0.00 0.00 5.52
87 88 4.529897 TCACTAATGACCTACTAAGCGGA 58.470 43.478 0.00 0.00 0.00 5.54
89 90 5.009710 TCACTAATGACCTACTAAGCGGATG 59.990 44.000 0.00 0.00 0.00 3.51
90 91 3.753294 AATGACCTACTAAGCGGATGG 57.247 47.619 0.00 0.00 0.00 3.51
91 92 0.750850 TGACCTACTAAGCGGATGGC 59.249 55.000 0.00 0.00 44.05 4.40
92 93 0.033642 GACCTACTAAGCGGATGGCC 59.966 60.000 0.00 0.00 45.17 5.36
94 95 1.133262 ACCTACTAAGCGGATGGCCTA 60.133 52.381 3.32 0.00 45.17 3.93
95 96 1.272769 CCTACTAAGCGGATGGCCTAC 59.727 57.143 3.32 0.00 45.17 3.18
96 97 2.240279 CTACTAAGCGGATGGCCTACT 58.760 52.381 3.32 0.00 45.17 2.57
97 98 2.376695 ACTAAGCGGATGGCCTACTA 57.623 50.000 3.32 0.00 45.17 1.82
98 99 2.674420 ACTAAGCGGATGGCCTACTAA 58.326 47.619 3.32 0.00 45.17 2.24
99 100 2.628657 ACTAAGCGGATGGCCTACTAAG 59.371 50.000 3.32 0.00 45.17 2.18
100 101 0.106894 AAGCGGATGGCCTACTAAGC 59.893 55.000 3.32 2.09 45.17 3.09
101 102 1.664965 GCGGATGGCCTACTAAGCG 60.665 63.158 3.32 0.00 34.80 4.68
102 103 1.006102 CGGATGGCCTACTAAGCGG 60.006 63.158 3.32 0.00 0.00 5.52
103 104 1.461091 CGGATGGCCTACTAAGCGGA 61.461 60.000 3.32 0.00 0.00 5.54
104 105 0.977395 GGATGGCCTACTAAGCGGAT 59.023 55.000 3.32 0.00 0.00 4.18
105 106 1.338200 GGATGGCCTACTAAGCGGATG 60.338 57.143 3.32 0.00 0.00 3.51
106 107 0.687354 ATGGCCTACTAAGCGGATGG 59.313 55.000 3.32 0.00 0.00 3.51
108 109 1.301795 GCCTACTAAGCGGATGGCC 60.302 63.158 0.00 0.00 45.17 5.36
109 110 1.759459 GCCTACTAAGCGGATGGCCT 61.759 60.000 3.32 0.00 45.17 5.19
111 112 1.272769 CCTACTAAGCGGATGGCCTAC 59.727 57.143 3.32 0.00 45.17 3.18
113 114 2.376695 ACTAAGCGGATGGCCTACTA 57.623 50.000 3.32 0.00 45.17 1.82
114 115 2.674420 ACTAAGCGGATGGCCTACTAA 58.326 47.619 3.32 0.00 45.17 2.24
115 116 2.628657 ACTAAGCGGATGGCCTACTAAG 59.371 50.000 3.32 0.00 45.17 2.18
134 189 3.275617 AGCGGTATTGCCACTAATGAA 57.724 42.857 0.00 0.00 36.97 2.57
141 196 6.265577 GGTATTGCCACTAATGAACAATGAC 58.734 40.000 0.00 0.00 35.38 3.06
158 213 5.298527 ACAATGACTGCATATGATTCCACAG 59.701 40.000 6.97 5.60 33.44 3.66
169 226 5.549742 ATGATTCCACAGATCCTCTCTTC 57.450 43.478 0.00 0.00 29.16 2.87
438 508 4.841422 CCAGAACAAAGTCATCCTCATCT 58.159 43.478 0.00 0.00 0.00 2.90
590 733 4.494484 TCTATGATGTGTTCTTCGTGTGG 58.506 43.478 0.00 0.00 0.00 4.17
608 751 4.692625 GTGTGGTCTGATATCCATGTATGC 59.307 45.833 0.00 0.00 36.09 3.14
641 784 2.639839 AGGTATGTGTTGAGGCAAGAGT 59.360 45.455 0.00 0.00 0.00 3.24
678 821 5.328565 TGTATTTGTTGTGGGGATCAATGA 58.671 37.500 0.00 0.00 0.00 2.57
778 922 4.363546 TCCTTTTAGGTACCCAGGATCT 57.636 45.455 8.74 0.00 36.53 2.75
831 975 4.618920 AGGAGACCGTGAAGTGTTATTT 57.381 40.909 0.00 0.00 0.00 1.40
836 980 6.072673 GGAGACCGTGAAGTGTTATTTTGAAT 60.073 38.462 0.00 0.00 0.00 2.57
837 981 7.118680 GGAGACCGTGAAGTGTTATTTTGAATA 59.881 37.037 0.00 0.00 0.00 1.75
838 982 8.561738 AGACCGTGAAGTGTTATTTTGAATAT 57.438 30.769 0.00 0.00 0.00 1.28
839 983 9.010029 AGACCGTGAAGTGTTATTTTGAATATT 57.990 29.630 0.00 0.00 0.00 1.28
840 984 9.620660 GACCGTGAAGTGTTATTTTGAATATTT 57.379 29.630 0.00 0.00 0.00 1.40
841 985 9.405587 ACCGTGAAGTGTTATTTTGAATATTTG 57.594 29.630 0.00 0.00 0.00 2.32
842 986 9.405587 CCGTGAAGTGTTATTTTGAATATTTGT 57.594 29.630 0.00 0.00 0.00 2.83
880 1024 9.907576 TCGTATTTAAACATTTTGCAAGTTTTG 57.092 25.926 17.27 8.85 36.85 2.44
881 1025 9.152851 CGTATTTAAACATTTTGCAAGTTTTGG 57.847 29.630 17.27 1.90 36.85 3.28
882 1026 9.444534 GTATTTAAACATTTTGCAAGTTTTGGG 57.555 29.630 17.27 0.99 36.85 4.12
883 1027 7.687941 TTTAAACATTTTGCAAGTTTTGGGA 57.312 28.000 17.27 1.16 36.85 4.37
884 1028 7.872113 TTAAACATTTTGCAAGTTTTGGGAT 57.128 28.000 17.27 0.00 36.85 3.85
885 1029 5.754543 AACATTTTGCAAGTTTTGGGATG 57.245 34.783 0.00 0.00 0.00 3.51
886 1030 4.779696 ACATTTTGCAAGTTTTGGGATGT 58.220 34.783 0.00 0.00 0.00 3.06
887 1031 5.192176 ACATTTTGCAAGTTTTGGGATGTT 58.808 33.333 0.00 0.00 0.00 2.71
888 1032 5.651576 ACATTTTGCAAGTTTTGGGATGTTT 59.348 32.000 0.00 0.00 0.00 2.83
889 1033 5.557891 TTTTGCAAGTTTTGGGATGTTTG 57.442 34.783 0.00 0.00 0.00 2.93
890 1034 3.902881 TGCAAGTTTTGGGATGTTTGT 57.097 38.095 0.00 0.00 0.00 2.83
891 1035 3.529533 TGCAAGTTTTGGGATGTTTGTG 58.470 40.909 0.00 0.00 0.00 3.33
892 1036 3.055530 TGCAAGTTTTGGGATGTTTGTGT 60.056 39.130 0.00 0.00 0.00 3.72
893 1037 3.938334 GCAAGTTTTGGGATGTTTGTGTT 59.062 39.130 0.00 0.00 0.00 3.32
894 1038 5.112686 GCAAGTTTTGGGATGTTTGTGTTA 58.887 37.500 0.00 0.00 0.00 2.41
895 1039 5.006261 GCAAGTTTTGGGATGTTTGTGTTAC 59.994 40.000 0.00 0.00 0.00 2.50
896 1040 5.923733 AGTTTTGGGATGTTTGTGTTACA 57.076 34.783 0.00 0.00 0.00 2.41
897 1041 5.656480 AGTTTTGGGATGTTTGTGTTACAC 58.344 37.500 8.76 8.76 34.56 2.90
898 1042 3.972950 TTGGGATGTTTGTGTTACACG 57.027 42.857 11.07 0.00 37.14 4.49
899 1043 1.604755 TGGGATGTTTGTGTTACACGC 59.395 47.619 11.07 4.52 37.14 5.34
900 1044 1.068816 GGGATGTTTGTGTTACACGCC 60.069 52.381 11.07 5.16 37.14 5.68
901 1045 1.604755 GGATGTTTGTGTTACACGCCA 59.395 47.619 11.07 7.41 37.14 5.69
902 1046 2.350388 GGATGTTTGTGTTACACGCCAG 60.350 50.000 11.07 0.00 37.14 4.85
903 1047 0.378962 TGTTTGTGTTACACGCCAGC 59.621 50.000 11.07 0.61 37.14 4.85
904 1048 0.378962 GTTTGTGTTACACGCCAGCA 59.621 50.000 11.07 0.00 37.14 4.41
905 1049 0.660488 TTTGTGTTACACGCCAGCAG 59.340 50.000 11.07 0.00 37.14 4.24
906 1050 0.462937 TTGTGTTACACGCCAGCAGT 60.463 50.000 11.07 0.00 37.14 4.40
907 1051 0.462937 TGTGTTACACGCCAGCAGTT 60.463 50.000 11.07 0.00 37.14 3.16
908 1052 0.234884 GTGTTACACGCCAGCAGTTC 59.765 55.000 0.00 0.00 0.00 3.01
909 1053 1.218875 TGTTACACGCCAGCAGTTCG 61.219 55.000 0.00 0.00 0.00 3.95
910 1054 0.942410 GTTACACGCCAGCAGTTCGA 60.942 55.000 0.00 0.00 0.00 3.71
911 1055 0.666274 TTACACGCCAGCAGTTCGAG 60.666 55.000 0.00 0.00 0.00 4.04
912 1056 1.802337 TACACGCCAGCAGTTCGAGT 61.802 55.000 0.00 0.00 0.00 4.18
913 1057 1.080772 CACGCCAGCAGTTCGAGTA 60.081 57.895 0.00 0.00 0.00 2.59
914 1058 1.080705 ACGCCAGCAGTTCGAGTAC 60.081 57.895 0.00 0.00 0.00 2.73
915 1059 2.152699 CGCCAGCAGTTCGAGTACG 61.153 63.158 0.00 0.00 41.26 3.67
916 1060 1.080705 GCCAGCAGTTCGAGTACGT 60.081 57.895 0.00 0.00 40.69 3.57
917 1061 0.169672 GCCAGCAGTTCGAGTACGTA 59.830 55.000 0.00 0.00 40.69 3.57
918 1062 1.401931 GCCAGCAGTTCGAGTACGTAA 60.402 52.381 0.00 0.00 40.69 3.18
919 1063 2.734492 GCCAGCAGTTCGAGTACGTAAT 60.734 50.000 0.00 0.00 40.69 1.89
920 1064 3.508762 CCAGCAGTTCGAGTACGTAATT 58.491 45.455 0.00 0.00 40.69 1.40
921 1065 3.924686 CCAGCAGTTCGAGTACGTAATTT 59.075 43.478 0.00 0.00 40.69 1.82
922 1066 4.387862 CCAGCAGTTCGAGTACGTAATTTT 59.612 41.667 0.00 0.00 40.69 1.82
923 1067 5.444218 CCAGCAGTTCGAGTACGTAATTTTC 60.444 44.000 0.00 0.00 40.69 2.29
924 1068 5.345202 CAGCAGTTCGAGTACGTAATTTTCT 59.655 40.000 0.00 0.00 40.69 2.52
925 1069 5.572126 AGCAGTTCGAGTACGTAATTTTCTC 59.428 40.000 0.00 0.00 40.69 2.87
926 1070 5.496657 GCAGTTCGAGTACGTAATTTTCTCG 60.497 44.000 20.41 20.41 45.85 4.04
930 1074 5.980324 CGAGTACGTAATTTTCTCGACAA 57.020 39.130 21.37 0.00 46.92 3.18
931 1075 6.366644 CGAGTACGTAATTTTCTCGACAAA 57.633 37.500 21.37 0.00 46.92 2.83
932 1076 6.800216 CGAGTACGTAATTTTCTCGACAAAA 58.200 36.000 21.37 0.94 46.92 2.44
933 1077 7.275785 CGAGTACGTAATTTTCTCGACAAAAA 58.724 34.615 21.37 3.42 46.92 1.94
959 1103 6.719829 ACATTAGAACCTTAGAAAAACCCCAG 59.280 38.462 0.00 0.00 0.00 4.45
961 1105 3.465966 AGAACCTTAGAAAAACCCCAGGT 59.534 43.478 0.00 0.00 37.65 4.00
964 1108 2.433436 CTTAGAAAAACCCCAGGTCCG 58.567 52.381 0.00 0.00 33.12 4.79
965 1109 1.732117 TAGAAAAACCCCAGGTCCGA 58.268 50.000 0.00 0.00 33.12 4.55
967 1111 0.608308 GAAAAACCCCAGGTCCGAGG 60.608 60.000 0.00 0.00 33.12 4.63
968 1112 2.708593 AAAAACCCCAGGTCCGAGGC 62.709 60.000 0.00 0.00 33.12 4.70
970 1114 4.658786 ACCCCAGGTCCGAGGCTT 62.659 66.667 0.00 0.00 0.00 4.35
972 1116 3.787001 CCCAGGTCCGAGGCTTCC 61.787 72.222 0.00 0.00 0.00 3.46
1213 1357 4.296729 ACACCTCCGACCCCGACT 62.297 66.667 0.00 0.00 38.22 4.18
1272 1416 4.243008 TTCGTTGGTGCTGCCGGA 62.243 61.111 5.05 0.00 41.21 5.14
1372 1516 1.376812 GGCCCTTGGTTCGTACTGG 60.377 63.158 0.00 0.00 0.00 4.00
1373 1517 2.038837 GCCCTTGGTTCGTACTGGC 61.039 63.158 0.00 0.00 0.00 4.85
1374 1518 1.740296 CCCTTGGTTCGTACTGGCG 60.740 63.158 0.00 0.00 0.00 5.69
1375 1519 1.005394 CCTTGGTTCGTACTGGCGT 60.005 57.895 0.00 0.00 0.00 5.68
1376 1520 0.244450 CCTTGGTTCGTACTGGCGTA 59.756 55.000 0.00 0.00 0.00 4.42
1377 1521 1.343506 CTTGGTTCGTACTGGCGTAC 58.656 55.000 8.82 8.82 42.03 3.67
1378 1522 0.961019 TTGGTTCGTACTGGCGTACT 59.039 50.000 14.44 0.00 43.03 2.73
1379 1523 0.961019 TGGTTCGTACTGGCGTACTT 59.039 50.000 14.44 0.00 43.03 2.24
1380 1524 1.340889 TGGTTCGTACTGGCGTACTTT 59.659 47.619 14.44 0.00 43.03 2.66
1411 1555 0.102300 TGATCCCGTACAGCATGACG 59.898 55.000 0.00 0.00 39.69 4.35
1429 1573 1.202268 ACGTGGAACTGTATCGCTAGC 60.202 52.381 4.06 4.06 31.75 3.42
1430 1574 1.202256 CGTGGAACTGTATCGCTAGCA 60.202 52.381 16.45 2.17 31.75 3.49
1433 1577 2.035961 TGGAACTGTATCGCTAGCATCC 59.964 50.000 16.45 8.79 0.00 3.51
1434 1578 2.297597 GGAACTGTATCGCTAGCATCCT 59.702 50.000 16.45 0.00 0.00 3.24
1439 1583 4.827835 ACTGTATCGCTAGCATCCTTCTAA 59.172 41.667 16.45 0.00 0.00 2.10
1441 1585 6.659668 ACTGTATCGCTAGCATCCTTCTAATA 59.340 38.462 16.45 0.00 0.00 0.98
1443 1587 8.747538 TGTATCGCTAGCATCCTTCTAATATA 57.252 34.615 16.45 0.00 0.00 0.86
1444 1588 8.841300 TGTATCGCTAGCATCCTTCTAATATAG 58.159 37.037 16.45 0.00 0.00 1.31
1445 1589 6.137794 TCGCTAGCATCCTTCTAATATAGC 57.862 41.667 16.45 0.00 0.00 2.97
1446 1590 5.652452 TCGCTAGCATCCTTCTAATATAGCA 59.348 40.000 16.45 0.00 35.30 3.49
1448 1592 6.640499 CGCTAGCATCCTTCTAATATAGCATC 59.360 42.308 16.45 0.00 35.30 3.91
1449 1593 7.495901 GCTAGCATCCTTCTAATATAGCATCA 58.504 38.462 10.63 0.00 35.58 3.07
1450 1594 7.437862 GCTAGCATCCTTCTAATATAGCATCAC 59.562 40.741 10.63 0.00 35.58 3.06
1451 1595 7.250032 AGCATCCTTCTAATATAGCATCACA 57.750 36.000 0.00 0.00 0.00 3.58
1452 1596 7.329499 AGCATCCTTCTAATATAGCATCACAG 58.671 38.462 0.00 0.00 0.00 3.66
1453 1597 7.179872 AGCATCCTTCTAATATAGCATCACAGA 59.820 37.037 0.00 0.00 0.00 3.41
1454 1598 7.821359 GCATCCTTCTAATATAGCATCACAGAA 59.179 37.037 0.00 0.00 0.00 3.02
1457 1601 8.580720 TCCTTCTAATATAGCATCACAGAAGTC 58.419 37.037 0.00 0.00 37.09 3.01
1465 1781 9.979578 ATATAGCATCACAGAAGTCTTTTCTAG 57.020 33.333 0.00 0.00 0.00 2.43
1474 1790 6.326843 ACAGAAGTCTTTTCTAGTGTAGGGTT 59.673 38.462 0.00 0.00 0.00 4.11
1481 1797 9.281371 GTCTTTTCTAGTGTAGGGTTATGTTTT 57.719 33.333 0.00 0.00 0.00 2.43
1508 1824 8.500837 TCTTGCACGATTTTAGTGTTAAATTG 57.499 30.769 0.00 0.00 41.36 2.32
1512 1828 7.168302 TGCACGATTTTAGTGTTAAATTGTTGG 59.832 33.333 0.00 0.00 37.45 3.77
1514 1830 8.687301 CACGATTTTAGTGTTAAATTGTTGGTC 58.313 33.333 0.00 0.00 37.45 4.02
1515 1831 8.407064 ACGATTTTAGTGTTAAATTGTTGGTCA 58.593 29.630 0.00 0.00 36.61 4.02
1528 1844 4.305539 TGTTGGTCATGTCAGATGGAAT 57.694 40.909 0.00 0.00 0.00 3.01
1569 1903 2.060284 CGGTTGTGGAATGCATTGTTG 58.940 47.619 18.59 0.00 0.00 3.33
1570 1904 2.415776 GGTTGTGGAATGCATTGTTGG 58.584 47.619 18.59 0.00 0.00 3.77
1577 1911 5.105797 TGTGGAATGCATTGTTGGTCTAATC 60.106 40.000 18.59 0.00 0.00 1.75
1587 1921 3.056107 TGTTGGTCTAATCTCCTTGGACG 60.056 47.826 0.00 0.00 44.08 4.79
1634 1969 9.646427 CTTCTGACTAGAAACATAGCTTTTACT 57.354 33.333 0.00 0.00 42.11 2.24
1712 2047 9.533253 AATACTTTTTGCTACATAAATGATGCC 57.467 29.630 0.00 0.00 39.39 4.40
1735 2072 4.376210 CGCACAACAAAATACAATTGCCTG 60.376 41.667 5.05 0.00 0.00 4.85
1751 2088 2.280628 GCCTGTGTGTCTTACATAGCC 58.719 52.381 0.00 0.00 44.49 3.93
1784 2121 7.733047 TGTGTATCCAGGTCATATTACCAGTAT 59.267 37.037 8.77 0.00 42.40 2.12
1830 2167 2.952310 GTTTTGTCCAGAAAGCTGAGGT 59.048 45.455 0.00 0.00 45.17 3.85
1913 2250 4.217118 GTGTTGCTTGACTGGAATGAGATT 59.783 41.667 0.00 0.00 0.00 2.40
2006 2353 9.226345 GTGAGCTTCAATTGTATAGTTTAATGC 57.774 33.333 5.13 0.00 0.00 3.56
2095 2444 6.374053 TCTTGCGATGAGGACATTTTATTTGA 59.626 34.615 0.00 0.00 36.82 2.69
2386 2739 6.890268 TCAGTAAGTCTTCCTGCAATAGAGTA 59.110 38.462 0.36 0.00 0.00 2.59
2647 3001 6.479436 CATTTTGCGACGTTTACCACATATA 58.521 36.000 0.00 0.00 0.00 0.86
2917 3271 2.317594 AGGTCTCTCCCTCCTTCAGAAT 59.682 50.000 0.00 0.00 36.75 2.40
2924 3278 5.994250 TCTCCCTCCTTCAGAATGTAAATG 58.006 41.667 0.00 0.00 37.40 2.32
3028 3387 6.389830 AATGAGTGAACACACTAAAATGCA 57.610 33.333 7.68 0.00 43.70 3.96
3050 3409 8.272545 TGCATCTATATACATTCAAATCAGGC 57.727 34.615 0.00 0.00 0.00 4.85
3092 3457 8.684386 TGGTGAACAGAGTGATATTTGTTAAA 57.316 30.769 0.00 0.00 34.18 1.52
3217 3583 0.749649 TTGTGGCCTGAACGCATTTT 59.250 45.000 3.32 0.00 0.00 1.82
3562 3928 5.714806 CACCAAATACTTAACCCACCTTGAT 59.285 40.000 0.00 0.00 0.00 2.57
3623 3989 7.180408 ACTTCCAATGTATAACCTGTACTCTGT 59.820 37.037 0.00 0.00 0.00 3.41
3651 4017 9.606631 ATTGTCATTCTCTCTACCTTTTCATAC 57.393 33.333 0.00 0.00 0.00 2.39
3691 4057 4.502282 GCTACTCATGATTCTGAACACTCG 59.498 45.833 0.00 0.00 0.00 4.18
3707 4073 6.869388 TGAACACTCGTGTATTATTTGTGCTA 59.131 34.615 2.75 0.00 44.13 3.49
4159 4688 8.042119 GCGTTTTATTATGTTAATTGAGCAACG 58.958 33.333 0.00 0.00 35.16 4.10
4186 4715 9.660180 TTATTGTACAGTGCATCTATTGTGTTA 57.340 29.630 0.34 0.00 0.00 2.41
4204 4733 8.752766 TTGTGTTACTAGAGATAAGTTTTCCG 57.247 34.615 0.00 0.00 0.00 4.30
4320 4849 3.118038 AGTGACTGGCCTTTGTTCAAGTA 60.118 43.478 3.32 0.00 0.00 2.24
4442 4971 2.143925 GAGAGGGTCCAAGTTGTTTCG 58.856 52.381 1.45 0.00 0.00 3.46
4642 5171 2.504367 GTACAGTTTGATGCCTGTGGT 58.496 47.619 2.72 0.00 41.77 4.16
4693 5222 4.768968 CCCCATCATCATTCAGTATTTCCC 59.231 45.833 0.00 0.00 0.00 3.97
4744 5273 4.208873 GCGAAACTGTGCATTTTCATTTGA 59.791 37.500 14.91 0.00 31.80 2.69
4908 5444 4.285863 AGGTCCTAGGCTGCTATCATATC 58.714 47.826 2.96 0.00 0.00 1.63
4940 5476 4.916041 TCCATCATCTTGTGAAAGGACT 57.084 40.909 0.00 0.00 40.97 3.85
4958 6230 3.406764 GACTGCCTGATTTCACTGTTCT 58.593 45.455 0.00 0.00 0.00 3.01
4959 6231 3.144506 ACTGCCTGATTTCACTGTTCTG 58.855 45.455 0.00 0.00 0.00 3.02
4960 6232 2.486982 CTGCCTGATTTCACTGTTCTGG 59.513 50.000 0.32 0.32 0.00 3.86
4961 6233 2.106338 TGCCTGATTTCACTGTTCTGGA 59.894 45.455 7.16 0.00 32.03 3.86
4962 6234 2.746362 GCCTGATTTCACTGTTCTGGAG 59.254 50.000 7.16 0.00 32.03 3.86
4963 6235 3.808618 GCCTGATTTCACTGTTCTGGAGT 60.809 47.826 7.16 0.00 32.03 3.85
4964 6236 4.563580 GCCTGATTTCACTGTTCTGGAGTA 60.564 45.833 7.16 0.00 32.03 2.59
4965 6237 5.174395 CCTGATTTCACTGTTCTGGAGTAG 58.826 45.833 0.00 0.00 32.03 2.57
4966 6238 5.047021 CCTGATTTCACTGTTCTGGAGTAGA 60.047 44.000 0.00 0.00 32.03 2.59
4967 6239 6.030548 TGATTTCACTGTTCTGGAGTAGAG 57.969 41.667 0.00 0.00 36.61 2.43
4968 6240 3.944055 TTCACTGTTCTGGAGTAGAGC 57.056 47.619 0.00 0.00 36.61 4.09
4969 6241 2.876581 TCACTGTTCTGGAGTAGAGCA 58.123 47.619 0.00 0.00 43.30 4.26
4972 6244 2.310779 TGTTCTGGAGTAGAGCAGGT 57.689 50.000 0.00 0.00 41.07 4.00
4973 6245 2.609747 TGTTCTGGAGTAGAGCAGGTT 58.390 47.619 0.00 0.00 41.07 3.50
4974 6246 2.563179 TGTTCTGGAGTAGAGCAGGTTC 59.437 50.000 0.00 0.00 41.07 3.62
4975 6247 1.853963 TCTGGAGTAGAGCAGGTTCC 58.146 55.000 0.00 0.00 0.00 3.62
4976 6248 1.359474 TCTGGAGTAGAGCAGGTTCCT 59.641 52.381 0.00 0.00 0.00 3.36
4977 6249 1.480137 CTGGAGTAGAGCAGGTTCCTG 59.520 57.143 13.88 13.88 37.15 3.86
4978 6250 1.077169 TGGAGTAGAGCAGGTTCCTGA 59.923 52.381 21.32 0.00 36.24 3.86
4979 6251 2.292521 TGGAGTAGAGCAGGTTCCTGAT 60.293 50.000 21.32 15.85 36.24 2.90
4980 6252 3.052869 TGGAGTAGAGCAGGTTCCTGATA 60.053 47.826 21.32 8.47 36.24 2.15
4981 6253 3.319689 GGAGTAGAGCAGGTTCCTGATAC 59.680 52.174 21.32 17.64 36.24 2.24
4982 6254 2.952978 AGTAGAGCAGGTTCCTGATACG 59.047 50.000 21.32 0.00 36.24 3.06
4983 6255 1.115467 AGAGCAGGTTCCTGATACGG 58.885 55.000 21.32 0.00 36.24 4.02
4984 6256 0.824759 GAGCAGGTTCCTGATACGGT 59.175 55.000 21.32 0.58 36.24 4.83
4985 6257 0.537188 AGCAGGTTCCTGATACGGTG 59.463 55.000 21.32 0.00 36.24 4.94
4986 6258 0.535335 GCAGGTTCCTGATACGGTGA 59.465 55.000 21.32 0.00 36.24 4.02
4987 6259 1.139058 GCAGGTTCCTGATACGGTGAT 59.861 52.381 21.32 0.00 36.24 3.06
4988 6260 2.803492 GCAGGTTCCTGATACGGTGATC 60.803 54.545 21.32 0.00 36.24 2.92
5041 6313 5.575157 TGAAAGGTGGCCATTTAATAGTCA 58.425 37.500 9.72 4.54 0.00 3.41
5071 6343 2.042686 TCATTTTCTCCATCCAGCGG 57.957 50.000 0.00 0.00 0.00 5.52
5072 6344 1.281867 TCATTTTCTCCATCCAGCGGT 59.718 47.619 0.00 0.00 0.00 5.68
5076 6348 4.764050 TTTTCTCCATCCAGCGGTATTA 57.236 40.909 0.00 0.00 0.00 0.98
5108 6380 0.251742 CATGGAGTTTGGCTTCCCCA 60.252 55.000 0.00 0.00 43.51 4.96
5167 6453 6.318648 GTGGTGTGAATGTGTGATATACCATT 59.681 38.462 0.00 0.00 37.91 3.16
5180 6466 6.038271 GTGATATACCATTTGCCGTTTCTCTT 59.962 38.462 0.00 0.00 0.00 2.85
5234 6520 6.861055 TGACAAGACAGTTGTTTTTGACTTTC 59.139 34.615 13.72 5.39 31.96 2.62
5276 6562 3.669536 TGCATTTTATGACTGACACCGA 58.330 40.909 0.00 0.00 0.00 4.69
5318 6604 8.838649 ATTGTTTGTAATTCCCTAGCCTAATT 57.161 30.769 0.00 0.00 0.00 1.40
5350 6636 0.473694 AGGGGATCCGTCATGGCATA 60.474 55.000 5.45 0.00 37.80 3.14
5503 6789 0.533308 TGGGGCGGTCGTTAATATGC 60.533 55.000 0.00 0.00 0.00 3.14
5558 6844 6.430007 AGGTAAATCTTTGAGCTCATCCATT 58.570 36.000 19.04 12.35 0.00 3.16
5563 6849 8.707796 AAATCTTTGAGCTCATCCATTGATAT 57.292 30.769 19.04 0.00 32.72 1.63
5570 6856 9.749340 TTGAGCTCATCCATTGATATATCATTT 57.251 29.630 19.04 4.74 36.56 2.32
5787 7075 2.095263 AGTTGAATTTGACGCAATCCGG 60.095 45.455 0.00 0.00 42.52 5.14
5817 7105 6.392625 TCTCCTTATGACAACTTATCTCCG 57.607 41.667 0.00 0.00 0.00 4.63
5877 7165 9.974980 TCTTTTAATGATACAAGGTTTTTGTCC 57.025 29.630 0.00 0.00 34.11 4.02
5879 7167 9.535878 TTTTAATGATACAAGGTTTTTGTCCAC 57.464 29.630 0.00 0.00 34.11 4.02
5902 7191 5.593095 ACCTCATTGTACTCTTGCGATACTA 59.407 40.000 0.00 0.00 0.00 1.82
5958 7247 7.229306 TGAAATTTTCAGCTCACAAGACTGTAT 59.771 33.333 7.74 0.00 34.08 2.29
5969 7258 6.591935 TCACAAGACTGTATTCAAGGTTTCT 58.408 36.000 0.00 0.00 33.22 2.52
5972 7261 7.657761 CACAAGACTGTATTCAAGGTTTCTAGT 59.342 37.037 0.00 0.00 33.22 2.57
5977 7266 6.204882 ACTGTATTCAAGGTTTCTAGTTGTGC 59.795 38.462 0.00 0.00 0.00 4.57
5999 7288 5.936956 TGCACTGTTGGTTTTCTTTTGAATT 59.063 32.000 0.00 0.00 38.37 2.17
6001 7290 6.128309 GCACTGTTGGTTTTCTTTTGAATTGT 60.128 34.615 0.00 0.00 38.37 2.71
6047 7336 0.978146 TAGGAGTCTGGGAAGCTGCC 60.978 60.000 0.16 0.16 0.00 4.85
6059 7348 1.455383 AAGCTGCCAAGTGGGTTTCG 61.455 55.000 0.00 0.00 39.65 3.46
6182 7471 1.402613 GAGGAGACAGCCTTCGAGTAC 59.597 57.143 0.00 0.00 38.73 2.73
6239 7528 4.820897 TGTCTGCGAAGTAATGAACTGAT 58.179 39.130 0.00 0.00 38.88 2.90
6244 7533 6.095580 TCTGCGAAGTAATGAACTGATACTCT 59.904 38.462 0.00 0.00 38.88 3.24
6311 7600 7.062722 CAGTAATCGATATCATTACCTGCTGTG 59.937 40.741 21.64 14.39 37.41 3.66
6332 7621 0.770499 TGACATCTGGCAACCTGGAA 59.230 50.000 0.00 0.00 0.00 3.53
6380 7669 1.876799 TCCACACTATTGTTGGTTGCG 59.123 47.619 7.81 0.00 31.66 4.85
6407 7696 4.497300 CATTTATTTGTGGGTTCCTGCAG 58.503 43.478 6.78 6.78 0.00 4.41
6463 7755 6.266203 CACAAATGAATGTTGTGCGTTAAA 57.734 33.333 4.52 0.00 46.63 1.52
6496 7788 1.154205 GCATCATCTGTCGTTCCCCG 61.154 60.000 0.00 0.00 38.13 5.73
6517 7809 5.006358 CCCGTCAAAATTAAGGTCAGTATCG 59.994 44.000 0.00 0.00 0.00 2.92
6518 7810 5.579511 CCGTCAAAATTAAGGTCAGTATCGT 59.420 40.000 0.00 0.00 0.00 3.73
6582 7884 8.897752 GTTCTCTCTATTATGGCAAAACTCAAT 58.102 33.333 0.00 0.00 0.00 2.57
6628 7931 5.150715 TCCAGATTGACATATGGCTCTAGT 58.849 41.667 10.60 0.00 41.08 2.57
6674 7977 4.082190 GTGCTACCGATGCTAGATATGGAA 60.082 45.833 0.00 0.00 0.00 3.53
6685 7988 8.954950 ATGCTAGATATGGAACTATAATGTGC 57.045 34.615 0.00 0.00 0.00 4.57
6758 8065 3.189495 TGTCGCTGTCTTGTGTTTTGAAA 59.811 39.130 0.00 0.00 0.00 2.69
6773 8080 7.916977 TGTGTTTTGAAACTCTGAATGAGATTG 59.083 33.333 7.97 0.00 45.39 2.67
6811 8118 4.418973 AGATGAGCTGCATGTAACATCT 57.581 40.909 16.04 16.04 39.31 2.90
6816 8123 3.144506 AGCTGCATGTAACATCTATGCC 58.855 45.455 1.02 0.00 44.91 4.40
6850 8157 5.125100 TGTTTCGATCGTTGTTAGTAGGT 57.875 39.130 15.94 0.00 0.00 3.08
6851 8158 6.252967 TGTTTCGATCGTTGTTAGTAGGTA 57.747 37.500 15.94 0.00 0.00 3.08
6906 8376 4.933400 TGTTTAGTACATTTTCTCGGAGCC 59.067 41.667 0.00 0.00 0.00 4.70
6938 8408 8.649973 AGTTTAAATATCCTTTCGCTAGTGAG 57.350 34.615 6.04 0.00 0.00 3.51
6939 8409 8.258708 AGTTTAAATATCCTTTCGCTAGTGAGT 58.741 33.333 6.04 0.00 0.00 3.41
6940 8410 9.525409 GTTTAAATATCCTTTCGCTAGTGAGTA 57.475 33.333 6.04 0.00 0.00 2.59
7046 8516 0.320073 TCCACAGTTTTCTACGCCGG 60.320 55.000 0.00 0.00 0.00 6.13
7105 8575 4.640771 TCTTCTTGAAACCTGGCAGTAT 57.359 40.909 14.43 0.00 0.00 2.12
7106 8576 4.579869 TCTTCTTGAAACCTGGCAGTATC 58.420 43.478 14.43 8.91 0.00 2.24
7154 8625 3.499737 GGCACGCCAATCTCCACG 61.500 66.667 2.36 0.00 35.81 4.94
7202 8678 0.317160 TGTGTGGTCCTCTGCTTACG 59.683 55.000 0.00 0.00 0.00 3.18
7226 8702 0.472925 TTCACTGGGTGGCTACTCCA 60.473 55.000 0.00 3.94 44.18 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.255890 GTAGGCCCATCAGCAAGGAA 59.744 55.000 0.00 0.00 0.00 3.36
22 23 1.041437 GAGTAGGCCATCCGCTTAGT 58.959 55.000 5.01 0.00 35.50 2.24
31 32 1.033574 GAGCGTACAGAGTAGGCCAT 58.966 55.000 5.01 0.00 0.00 4.40
69 70 3.006537 GCCATCCGCTTAGTAGGTCATTA 59.993 47.826 0.00 0.00 0.00 1.90
71 72 1.344763 GCCATCCGCTTAGTAGGTCAT 59.655 52.381 0.00 0.00 0.00 3.06
72 73 0.750850 GCCATCCGCTTAGTAGGTCA 59.249 55.000 0.00 0.00 0.00 4.02
73 74 0.033642 GGCCATCCGCTTAGTAGGTC 59.966 60.000 0.00 0.00 37.74 3.85
74 75 0.398664 AGGCCATCCGCTTAGTAGGT 60.399 55.000 5.01 0.00 37.74 3.08
75 76 1.272769 GTAGGCCATCCGCTTAGTAGG 59.727 57.143 5.01 0.00 37.74 3.18
76 77 2.240279 AGTAGGCCATCCGCTTAGTAG 58.760 52.381 5.01 0.00 37.74 2.57
77 78 2.376695 AGTAGGCCATCCGCTTAGTA 57.623 50.000 5.01 0.00 37.74 1.82
78 79 2.376695 TAGTAGGCCATCCGCTTAGT 57.623 50.000 5.01 0.00 36.68 2.24
79 80 2.610727 GCTTAGTAGGCCATCCGCTTAG 60.611 54.545 5.01 0.00 37.74 2.18
80 81 1.343465 GCTTAGTAGGCCATCCGCTTA 59.657 52.381 5.01 0.00 37.74 3.09
83 84 1.664965 CGCTTAGTAGGCCATCCGC 60.665 63.158 5.01 0.00 37.47 5.54
84 85 1.006102 CCGCTTAGTAGGCCATCCG 60.006 63.158 5.01 0.00 37.47 4.18
86 87 1.338200 CCATCCGCTTAGTAGGCCATC 60.338 57.143 5.01 0.00 0.00 3.51
87 88 0.687354 CCATCCGCTTAGTAGGCCAT 59.313 55.000 5.01 0.00 0.00 4.40
89 90 1.301795 GCCATCCGCTTAGTAGGCC 60.302 63.158 0.00 0.00 36.17 5.19
90 91 1.301795 GGCCATCCGCTTAGTAGGC 60.302 63.158 0.00 0.00 41.29 3.93
91 92 1.272769 GTAGGCCATCCGCTTAGTAGG 59.727 57.143 5.01 0.00 37.74 3.18
92 93 2.240279 AGTAGGCCATCCGCTTAGTAG 58.760 52.381 5.01 0.00 37.74 2.57
94 95 2.376695 TAGTAGGCCATCCGCTTAGT 57.623 50.000 5.01 0.00 36.68 2.24
95 96 2.610727 GCTTAGTAGGCCATCCGCTTAG 60.611 54.545 5.01 0.00 37.74 2.18
96 97 1.343465 GCTTAGTAGGCCATCCGCTTA 59.657 52.381 5.01 0.00 37.74 3.09
97 98 0.106894 GCTTAGTAGGCCATCCGCTT 59.893 55.000 5.01 0.00 37.74 4.68
98 99 1.749033 GCTTAGTAGGCCATCCGCT 59.251 57.895 5.01 0.00 37.74 5.52
99 100 1.664965 CGCTTAGTAGGCCATCCGC 60.665 63.158 5.01 0.00 37.47 5.54
100 101 1.006102 CCGCTTAGTAGGCCATCCG 60.006 63.158 5.01 0.00 37.47 4.18
101 102 1.335145 TACCGCTTAGTAGGCCATCC 58.665 55.000 5.01 0.00 0.00 3.51
102 103 3.326747 CAATACCGCTTAGTAGGCCATC 58.673 50.000 5.01 0.00 0.00 3.51
103 104 2.550208 GCAATACCGCTTAGTAGGCCAT 60.550 50.000 5.01 0.00 0.00 4.40
104 105 1.202604 GCAATACCGCTTAGTAGGCCA 60.203 52.381 5.01 0.00 0.00 5.36
105 106 1.509703 GCAATACCGCTTAGTAGGCC 58.490 55.000 0.00 0.00 0.00 5.19
106 107 1.202604 TGGCAATACCGCTTAGTAGGC 60.203 52.381 0.00 0.00 43.94 3.93
134 189 5.195185 TGTGGAATCATATGCAGTCATTGT 58.805 37.500 0.00 0.00 34.22 2.71
141 196 4.907809 AGGATCTGTGGAATCATATGCAG 58.092 43.478 0.00 0.00 0.00 4.41
158 213 6.508721 CGCGAAAACTTAATGAAGAGAGGATC 60.509 42.308 0.00 0.00 36.45 3.36
169 226 5.677178 GCCTATTTCTCGCGAAAACTTAATG 59.323 40.000 11.33 0.00 42.03 1.90
438 508 3.260884 GGCGAATAGGGTTGATGGAGATA 59.739 47.826 0.00 0.00 0.00 1.98
590 733 5.955488 ACTACGCATACATGGATATCAGAC 58.045 41.667 4.83 0.00 0.00 3.51
608 751 4.361451 ACACATACCTTACCGAACTACG 57.639 45.455 0.00 0.00 42.18 3.51
641 784 8.798402 CACAACAAATACAAAGGGTTATAAGGA 58.202 33.333 0.00 0.00 0.00 3.36
678 821 4.214758 CGAGACGTTAATTCAAACCCCTTT 59.785 41.667 0.00 0.00 0.00 3.11
778 922 1.964608 CTCCATGGCTCGCTCTCCAA 61.965 60.000 6.96 0.00 35.75 3.53
854 998 9.907576 CAAAACTTGCAAAATGTTTAAATACGA 57.092 25.926 13.70 0.00 35.65 3.43
855 999 9.152851 CCAAAACTTGCAAAATGTTTAAATACG 57.847 29.630 13.70 0.00 35.65 3.06
856 1000 9.444534 CCCAAAACTTGCAAAATGTTTAAATAC 57.555 29.630 13.70 0.00 35.65 1.89
857 1001 9.396022 TCCCAAAACTTGCAAAATGTTTAAATA 57.604 25.926 13.70 0.00 35.65 1.40
858 1002 8.286191 TCCCAAAACTTGCAAAATGTTTAAAT 57.714 26.923 13.70 0.00 35.65 1.40
859 1003 7.687941 TCCCAAAACTTGCAAAATGTTTAAA 57.312 28.000 13.70 0.00 35.65 1.52
860 1004 7.337942 ACATCCCAAAACTTGCAAAATGTTTAA 59.662 29.630 13.70 3.80 35.65 1.52
861 1005 6.825721 ACATCCCAAAACTTGCAAAATGTTTA 59.174 30.769 13.70 1.89 35.65 2.01
862 1006 5.651576 ACATCCCAAAACTTGCAAAATGTTT 59.348 32.000 8.93 8.93 37.65 2.83
863 1007 5.192176 ACATCCCAAAACTTGCAAAATGTT 58.808 33.333 0.00 0.00 0.00 2.71
864 1008 4.779696 ACATCCCAAAACTTGCAAAATGT 58.220 34.783 0.00 0.00 0.00 2.71
865 1009 5.754543 AACATCCCAAAACTTGCAAAATG 57.245 34.783 0.00 0.00 0.00 2.32
866 1010 5.651576 ACAAACATCCCAAAACTTGCAAAAT 59.348 32.000 0.00 0.00 0.00 1.82
867 1011 5.006386 ACAAACATCCCAAAACTTGCAAAA 58.994 33.333 0.00 0.00 0.00 2.44
868 1012 4.394300 CACAAACATCCCAAAACTTGCAAA 59.606 37.500 0.00 0.00 0.00 3.68
869 1013 3.937706 CACAAACATCCCAAAACTTGCAA 59.062 39.130 0.00 0.00 0.00 4.08
870 1014 3.055530 ACACAAACATCCCAAAACTTGCA 60.056 39.130 0.00 0.00 0.00 4.08
871 1015 3.530535 ACACAAACATCCCAAAACTTGC 58.469 40.909 0.00 0.00 0.00 4.01
872 1016 6.035542 GTGTAACACAAACATCCCAAAACTTG 59.964 38.462 0.00 0.00 36.32 3.16
873 1017 6.103330 GTGTAACACAAACATCCCAAAACTT 58.897 36.000 0.00 0.00 36.32 2.66
874 1018 5.656480 GTGTAACACAAACATCCCAAAACT 58.344 37.500 0.00 0.00 36.32 2.66
875 1019 4.501198 CGTGTAACACAAACATCCCAAAAC 59.499 41.667 0.00 0.00 35.74 2.43
876 1020 4.673441 CGTGTAACACAAACATCCCAAAA 58.327 39.130 0.00 0.00 35.74 2.44
877 1021 3.489398 GCGTGTAACACAAACATCCCAAA 60.489 43.478 0.00 0.00 35.74 3.28
878 1022 2.033550 GCGTGTAACACAAACATCCCAA 59.966 45.455 0.00 0.00 35.74 4.12
879 1023 1.604755 GCGTGTAACACAAACATCCCA 59.395 47.619 0.00 0.00 35.74 4.37
880 1024 1.068816 GGCGTGTAACACAAACATCCC 60.069 52.381 0.00 0.00 35.74 3.85
881 1025 1.604755 TGGCGTGTAACACAAACATCC 59.395 47.619 0.00 0.00 35.74 3.51
882 1026 2.916111 CTGGCGTGTAACACAAACATC 58.084 47.619 0.00 0.00 35.74 3.06
883 1027 1.001815 GCTGGCGTGTAACACAAACAT 60.002 47.619 0.00 0.00 35.74 2.71
884 1028 0.378962 GCTGGCGTGTAACACAAACA 59.621 50.000 0.00 0.00 35.74 2.83
885 1029 0.378962 TGCTGGCGTGTAACACAAAC 59.621 50.000 0.00 0.00 35.74 2.93
886 1030 0.660488 CTGCTGGCGTGTAACACAAA 59.340 50.000 0.00 0.00 35.74 2.83
887 1031 0.462937 ACTGCTGGCGTGTAACACAA 60.463 50.000 0.00 0.00 35.74 3.33
888 1032 0.462937 AACTGCTGGCGTGTAACACA 60.463 50.000 0.00 0.00 35.74 3.72
889 1033 0.234884 GAACTGCTGGCGTGTAACAC 59.765 55.000 0.00 0.00 35.74 3.32
890 1034 1.218875 CGAACTGCTGGCGTGTAACA 61.219 55.000 0.00 0.00 35.74 2.41
891 1035 0.942410 TCGAACTGCTGGCGTGTAAC 60.942 55.000 7.70 0.00 0.00 2.50
892 1036 0.666274 CTCGAACTGCTGGCGTGTAA 60.666 55.000 7.70 0.00 0.00 2.41
893 1037 1.080772 CTCGAACTGCTGGCGTGTA 60.081 57.895 7.70 0.00 0.00 2.90
894 1038 1.802337 TACTCGAACTGCTGGCGTGT 61.802 55.000 15.63 15.63 36.08 4.49
895 1039 1.080772 TACTCGAACTGCTGGCGTG 60.081 57.895 7.70 7.87 0.00 5.34
896 1040 1.080705 GTACTCGAACTGCTGGCGT 60.081 57.895 7.70 0.00 0.00 5.68
897 1041 2.152699 CGTACTCGAACTGCTGGCG 61.153 63.158 0.00 0.00 39.71 5.69
898 1042 0.169672 TACGTACTCGAACTGCTGGC 59.830 55.000 0.00 0.00 40.62 4.85
899 1043 2.624316 TTACGTACTCGAACTGCTGG 57.376 50.000 0.00 0.00 40.62 4.85
900 1044 5.345202 AGAAAATTACGTACTCGAACTGCTG 59.655 40.000 0.00 0.00 40.62 4.41
901 1045 5.467705 AGAAAATTACGTACTCGAACTGCT 58.532 37.500 0.00 0.00 40.62 4.24
902 1046 5.758570 AGAAAATTACGTACTCGAACTGC 57.241 39.130 0.00 0.00 40.62 4.40
930 1074 9.826574 GGGTTTTTCTAAGGTTCTAATGTTTTT 57.173 29.630 0.00 0.00 0.00 1.94
931 1075 8.426489 GGGGTTTTTCTAAGGTTCTAATGTTTT 58.574 33.333 0.00 0.00 0.00 2.43
932 1076 7.565768 TGGGGTTTTTCTAAGGTTCTAATGTTT 59.434 33.333 0.00 0.00 0.00 2.83
933 1077 7.070629 TGGGGTTTTTCTAAGGTTCTAATGTT 58.929 34.615 0.00 0.00 0.00 2.71
934 1078 6.616577 TGGGGTTTTTCTAAGGTTCTAATGT 58.383 36.000 0.00 0.00 0.00 2.71
935 1079 6.152831 CCTGGGGTTTTTCTAAGGTTCTAATG 59.847 42.308 0.00 0.00 0.00 1.90
936 1080 6.183361 ACCTGGGGTTTTTCTAAGGTTCTAAT 60.183 38.462 0.00 0.00 34.36 1.73
937 1081 5.134850 ACCTGGGGTTTTTCTAAGGTTCTAA 59.865 40.000 0.00 0.00 34.36 2.10
949 1093 1.458927 CCTCGGACCTGGGGTTTTT 59.541 57.895 0.00 0.00 35.25 1.94
959 1103 3.003763 AGTGGGAAGCCTCGGACC 61.004 66.667 0.00 0.00 0.00 4.46
961 1105 3.706373 GCAGTGGGAAGCCTCGGA 61.706 66.667 0.00 0.00 0.00 4.55
964 1108 0.315251 GTTTTGCAGTGGGAAGCCTC 59.685 55.000 0.00 0.00 0.00 4.70
965 1109 1.115326 GGTTTTGCAGTGGGAAGCCT 61.115 55.000 0.00 0.00 0.00 4.58
967 1111 1.007387 CGGTTTTGCAGTGGGAAGC 60.007 57.895 0.00 0.00 0.00 3.86
968 1112 0.310854 GACGGTTTTGCAGTGGGAAG 59.689 55.000 0.00 0.00 0.00 3.46
970 1114 0.817634 CAGACGGTTTTGCAGTGGGA 60.818 55.000 0.00 0.00 0.00 4.37
972 1116 1.021202 TTCAGACGGTTTTGCAGTGG 58.979 50.000 0.00 0.00 0.00 4.00
1372 1516 4.529446 TCAAACGAAATGGAAAAGTACGC 58.471 39.130 0.00 0.00 0.00 4.42
1373 1517 5.793457 GGATCAAACGAAATGGAAAAGTACG 59.207 40.000 0.00 0.00 0.00 3.67
1374 1518 6.090783 GGGATCAAACGAAATGGAAAAGTAC 58.909 40.000 0.00 0.00 0.00 2.73
1375 1519 5.106475 CGGGATCAAACGAAATGGAAAAGTA 60.106 40.000 0.00 0.00 0.00 2.24
1376 1520 4.320935 CGGGATCAAACGAAATGGAAAAGT 60.321 41.667 0.00 0.00 0.00 2.66
1377 1521 4.165779 CGGGATCAAACGAAATGGAAAAG 58.834 43.478 0.00 0.00 0.00 2.27
1378 1522 3.570550 ACGGGATCAAACGAAATGGAAAA 59.429 39.130 10.10 0.00 0.00 2.29
1379 1523 3.150767 ACGGGATCAAACGAAATGGAAA 58.849 40.909 10.10 0.00 0.00 3.13
1380 1524 2.785562 ACGGGATCAAACGAAATGGAA 58.214 42.857 10.10 0.00 0.00 3.53
1411 1555 2.579207 TGCTAGCGATACAGTTCCAC 57.421 50.000 10.77 0.00 0.00 4.02
1429 1573 9.368674 CTTCTGTGATGCTATATTAGAAGGATG 57.631 37.037 0.00 0.00 37.23 3.51
1430 1574 9.099071 ACTTCTGTGATGCTATATTAGAAGGAT 57.901 33.333 13.59 0.00 42.24 3.24
1433 1577 9.979578 AAGACTTCTGTGATGCTATATTAGAAG 57.020 33.333 0.00 0.00 43.08 2.85
1439 1583 9.979578 CTAGAAAAGACTTCTGTGATGCTATAT 57.020 33.333 0.00 0.00 0.00 0.86
1441 1585 7.763528 CACTAGAAAAGACTTCTGTGATGCTAT 59.236 37.037 0.00 0.00 33.50 2.97
1443 1587 5.931146 CACTAGAAAAGACTTCTGTGATGCT 59.069 40.000 0.00 0.00 33.50 3.79
1444 1588 5.698545 ACACTAGAAAAGACTTCTGTGATGC 59.301 40.000 16.70 0.00 34.61 3.91
1445 1589 7.543868 CCTACACTAGAAAAGACTTCTGTGATG 59.456 40.741 16.70 11.30 34.61 3.07
1446 1590 7.310113 CCCTACACTAGAAAAGACTTCTGTGAT 60.310 40.741 16.70 8.84 34.61 3.06
1448 1592 6.159988 CCCTACACTAGAAAAGACTTCTGTG 58.840 44.000 0.00 11.86 35.59 3.66
1449 1593 5.839606 ACCCTACACTAGAAAAGACTTCTGT 59.160 40.000 0.00 0.00 0.00 3.41
1450 1594 6.347859 ACCCTACACTAGAAAAGACTTCTG 57.652 41.667 0.00 0.00 0.00 3.02
1451 1595 6.997942 AACCCTACACTAGAAAAGACTTCT 57.002 37.500 0.00 0.00 0.00 2.85
1452 1596 8.312564 ACATAACCCTACACTAGAAAAGACTTC 58.687 37.037 0.00 0.00 0.00 3.01
1453 1597 8.203681 ACATAACCCTACACTAGAAAAGACTT 57.796 34.615 0.00 0.00 0.00 3.01
1454 1598 7.793948 ACATAACCCTACACTAGAAAAGACT 57.206 36.000 0.00 0.00 0.00 3.24
1481 1797 9.522804 AATTTAACACTAAAATCGTGCAAGAAA 57.477 25.926 6.39 0.00 35.84 2.52
1503 1819 5.078949 TCCATCTGACATGACCAACAATTT 58.921 37.500 0.00 0.00 0.00 1.82
1508 1824 4.264253 TCATTCCATCTGACATGACCAAC 58.736 43.478 0.00 0.00 0.00 3.77
1512 1828 4.940046 ACAGTTCATTCCATCTGACATGAC 59.060 41.667 0.00 0.00 0.00 3.06
1514 1830 5.646793 AGAACAGTTCATTCCATCTGACATG 59.353 40.000 15.85 0.00 0.00 3.21
1515 1831 5.646793 CAGAACAGTTCATTCCATCTGACAT 59.353 40.000 15.85 0.00 35.91 3.06
1528 1844 4.509970 CCGTGTATTTGACAGAACAGTTCA 59.490 41.667 15.85 0.00 39.29 3.18
1564 1898 4.562757 CGTCCAAGGAGATTAGACCAACAA 60.563 45.833 0.00 0.00 0.00 2.83
1569 1903 2.496470 ACACGTCCAAGGAGATTAGACC 59.504 50.000 0.00 0.00 0.00 3.85
1570 1904 3.870633 ACACGTCCAAGGAGATTAGAC 57.129 47.619 0.00 0.00 0.00 2.59
1577 1911 0.532862 AGTGCAACACGTCCAAGGAG 60.533 55.000 0.00 0.00 41.43 3.69
1587 1921 7.641411 CAGAAGCATATATAACAAGTGCAACAC 59.359 37.037 7.75 0.00 41.43 3.32
1700 2035 3.148026 TGTTGTGCGGCATCATTTATG 57.852 42.857 5.72 0.00 38.74 1.90
1701 2036 3.865011 TTGTTGTGCGGCATCATTTAT 57.135 38.095 5.72 0.00 0.00 1.40
1712 2047 3.740321 AGGCAATTGTATTTTGTTGTGCG 59.260 39.130 7.40 0.00 0.00 5.34
1751 2088 3.684908 TGACCTGGATACACAAACATGG 58.315 45.455 0.00 0.00 46.17 3.66
1784 2121 0.179004 ACTCCATTCCGTTTGGCACA 60.179 50.000 0.00 0.00 34.06 4.57
1830 2167 0.984230 CCTGCTAAACCACCAGAGGA 59.016 55.000 0.00 0.00 0.00 3.71
1913 2250 2.225491 GCACGTACCAAATTTCTCTGCA 59.775 45.455 0.00 0.00 0.00 4.41
2095 2444 3.201290 CTGATAAGTCTTCAGGCGCAAT 58.799 45.455 10.83 0.00 37.53 3.56
2175 2525 9.499479 AGAGTATATGCAAGAAACCTATGATTG 57.501 33.333 0.00 0.00 0.00 2.67
2176 2526 9.717942 GAGAGTATATGCAAGAAACCTATGATT 57.282 33.333 0.00 0.00 0.00 2.57
2326 2676 7.995289 AGAGTCTCATCACAGACAGTATAAAG 58.005 38.462 1.94 0.00 44.73 1.85
2612 2965 5.636837 ACGTCGCAAAATGCATTAGTATTT 58.363 33.333 13.39 0.00 45.36 1.40
2616 2969 3.552604 AACGTCGCAAAATGCATTAGT 57.447 38.095 13.39 0.54 45.36 2.24
2618 2971 4.159857 GGTAAACGTCGCAAAATGCATTA 58.840 39.130 13.39 0.00 45.36 1.90
2647 3001 7.930217 TCAGAAAGAACAATCGAAAACAAGAT 58.070 30.769 0.00 0.00 0.00 2.40
2917 3271 9.595823 GTAATAAACTCTGCCTAGACATTTACA 57.404 33.333 0.00 0.00 0.00 2.41
2924 3278 7.503230 AGAGGTAGTAATAAACTCTGCCTAGAC 59.497 40.741 5.25 0.00 39.80 2.59
3045 3404 7.933577 CACCAATATAAGATGTTCTAAGCCTGA 59.066 37.037 0.00 0.00 0.00 3.86
3049 3408 9.109393 TGTTCACCAATATAAGATGTTCTAAGC 57.891 33.333 0.00 0.00 0.00 3.09
3068 3433 9.394477 GTTTTAACAAATATCACTCTGTTCACC 57.606 33.333 0.00 0.00 34.08 4.02
3092 3457 8.322906 TGATCACTGACGAAGATATTTTTGTT 57.677 30.769 0.65 0.00 0.00 2.83
3265 3631 7.384932 GCAATAGAAATACAGGCAACAACTTTT 59.615 33.333 0.00 0.00 41.41 2.27
3273 3639 6.001449 ACCTAGCAATAGAAATACAGGCAA 57.999 37.500 0.00 0.00 0.00 4.52
3324 3690 8.836413 TCGTGAAAAATATCCATATCCTGAAAC 58.164 33.333 0.00 0.00 0.00 2.78
3549 3915 3.088532 GTCAATGCATCAAGGTGGGTTA 58.911 45.455 0.00 0.00 0.00 2.85
3550 3916 1.895131 GTCAATGCATCAAGGTGGGTT 59.105 47.619 0.00 0.00 0.00 4.11
3562 3928 4.759693 AGTGAAATTAAGACCGTCAATGCA 59.240 37.500 0.40 0.00 0.00 3.96
3651 4017 5.220710 AGTAGCAACAATCTAGCCCATAG 57.779 43.478 0.00 0.00 0.00 2.23
3707 4073 7.309438 GCTCCTGGAAGATAAACAAAAGTCATT 60.309 37.037 0.00 0.00 34.07 2.57
3725 4091 2.220653 CAATTCCTTTGGCTCCTGGA 57.779 50.000 0.00 0.00 0.00 3.86
3987 4354 3.494045 AGAAAAGAATTTGCTAGGCGC 57.506 42.857 0.00 0.00 43.82 6.53
3988 4355 5.106712 TGTGTAGAAAAGAATTTGCTAGGCG 60.107 40.000 0.00 0.00 46.53 5.52
3989 4356 6.072452 AGTGTGTAGAAAAGAATTTGCTAGGC 60.072 38.462 0.00 0.00 46.53 3.93
4075 4604 7.993821 ATTCTTCTACATGATACACAGTTCG 57.006 36.000 0.00 0.00 0.00 3.95
4159 4688 7.974675 ACACAATAGATGCACTGTACAATAAC 58.025 34.615 0.00 0.00 0.00 1.89
4238 4767 7.619965 TCATGTCATAATCCACAGTTAAGTCA 58.380 34.615 0.00 0.00 0.00 3.41
4320 4849 8.034313 ACATTGGATTGTCCTACTGTGTATAT 57.966 34.615 0.00 0.00 37.46 0.86
4442 4971 2.036475 AGGTATCGAGACACCATCATGC 59.964 50.000 12.92 0.00 37.28 4.06
4693 5222 6.619446 GCTGCAGTAAGTTGTAAGATGAGTTG 60.619 42.308 16.64 0.00 0.00 3.16
4744 5273 9.331282 GTCTGGTGCTTTAATAATCTAGTTCAT 57.669 33.333 0.00 0.00 0.00 2.57
4908 5444 3.361794 AGATGATGGATCAACGTCTCG 57.638 47.619 0.00 0.00 40.69 4.04
4940 5476 2.106338 TCCAGAACAGTGAAATCAGGCA 59.894 45.455 0.00 0.00 0.00 4.75
4958 6230 1.077169 TCAGGAACCTGCTCTACTCCA 59.923 52.381 15.20 0.00 43.31 3.86
4959 6231 1.853963 TCAGGAACCTGCTCTACTCC 58.146 55.000 15.20 0.00 43.31 3.85
4960 6232 3.003897 CGTATCAGGAACCTGCTCTACTC 59.996 52.174 15.20 2.32 43.31 2.59
4961 6233 2.952978 CGTATCAGGAACCTGCTCTACT 59.047 50.000 15.20 0.20 43.31 2.57
4962 6234 2.034812 CCGTATCAGGAACCTGCTCTAC 59.965 54.545 15.20 13.93 43.31 2.59
4963 6235 2.307768 CCGTATCAGGAACCTGCTCTA 58.692 52.381 15.20 5.11 43.31 2.43
4964 6236 1.115467 CCGTATCAGGAACCTGCTCT 58.885 55.000 15.20 5.96 43.31 4.09
4965 6237 0.824759 ACCGTATCAGGAACCTGCTC 59.175 55.000 15.20 7.56 43.31 4.26
4966 6238 0.537188 CACCGTATCAGGAACCTGCT 59.463 55.000 15.20 8.98 43.31 4.24
4967 6239 0.535335 TCACCGTATCAGGAACCTGC 59.465 55.000 15.20 2.02 43.31 4.85
4968 6240 2.224066 GGATCACCGTATCAGGAACCTG 60.224 54.545 14.01 14.01 44.86 4.00
4969 6241 2.040178 GGATCACCGTATCAGGAACCT 58.960 52.381 0.00 0.00 34.73 3.50
4970 6242 1.760613 TGGATCACCGTATCAGGAACC 59.239 52.381 0.00 0.00 39.42 3.62
4971 6243 3.181465 ACATGGATCACCGTATCAGGAAC 60.181 47.826 0.00 0.00 39.42 3.62
4972 6244 3.038280 ACATGGATCACCGTATCAGGAA 58.962 45.455 0.00 0.00 39.42 3.36
4973 6245 2.628178 GACATGGATCACCGTATCAGGA 59.372 50.000 0.00 0.00 39.42 3.86
4974 6246 2.365293 TGACATGGATCACCGTATCAGG 59.635 50.000 0.00 0.00 34.18 3.86
4975 6247 3.384668 GTGACATGGATCACCGTATCAG 58.615 50.000 5.37 0.00 38.99 2.90
4976 6248 3.452755 GTGACATGGATCACCGTATCA 57.547 47.619 5.37 0.00 42.74 2.15
4984 6256 5.698741 AATTACCTCTGTGACATGGATCA 57.301 39.130 10.93 0.00 0.00 2.92
4985 6257 5.220931 GCAAATTACCTCTGTGACATGGATC 60.221 44.000 10.93 0.00 0.00 3.36
4986 6258 4.641989 GCAAATTACCTCTGTGACATGGAT 59.358 41.667 10.93 0.37 0.00 3.41
4987 6259 4.009675 GCAAATTACCTCTGTGACATGGA 58.990 43.478 10.93 0.00 0.00 3.41
4988 6260 4.012374 AGCAAATTACCTCTGTGACATGG 58.988 43.478 0.00 3.69 0.00 3.66
4999 6271 7.890655 ACCTTTCAGAATTCTAGCAAATTACCT 59.109 33.333 7.86 0.00 0.00 3.08
5041 6313 7.890127 TGGATGGAGAAAATGATAGAACTTTGT 59.110 33.333 0.00 0.00 0.00 2.83
5071 6343 7.736893 ACTCCATGTTGATAACCTCCTAATAC 58.263 38.462 0.00 0.00 0.00 1.89
5072 6344 7.931015 ACTCCATGTTGATAACCTCCTAATA 57.069 36.000 0.00 0.00 0.00 0.98
5076 6348 5.256474 CAAACTCCATGTTGATAACCTCCT 58.744 41.667 0.00 0.00 39.13 3.69
5116 6391 8.623903 CATGCTCAGCCAAACTCTATTTATTTA 58.376 33.333 0.00 0.00 0.00 1.40
5117 6392 7.123247 ACATGCTCAGCCAAACTCTATTTATTT 59.877 33.333 0.00 0.00 0.00 1.40
5118 6393 6.604795 ACATGCTCAGCCAAACTCTATTTATT 59.395 34.615 0.00 0.00 0.00 1.40
5167 6453 0.039256 GCATGCAAGAGAAACGGCAA 60.039 50.000 14.21 0.00 37.27 4.52
5180 6466 8.613060 TTTAAAATTTTATTGTGGAGCATGCA 57.387 26.923 21.98 0.00 0.00 3.96
5212 6498 6.155827 TGGAAAGTCAAAAACAACTGTCTTG 58.844 36.000 0.00 0.38 31.55 3.02
5234 6520 9.991906 AATGCATTTCCTTCTAATCATAAATGG 57.008 29.630 5.99 0.00 35.74 3.16
5276 6562 8.669946 ACAAACAATCGGGAACATAAAATTTT 57.330 26.923 8.75 8.75 0.00 1.82
5318 6604 1.151413 GATCCCCTCCACCCCTACATA 59.849 57.143 0.00 0.00 0.00 2.29
5340 6626 1.808945 GTGCCTGCTATATGCCATGAC 59.191 52.381 0.00 0.00 42.00 3.06
5350 6636 3.164268 TGTTGATTTTGGTGCCTGCTAT 58.836 40.909 0.00 0.00 0.00 2.97
5503 6789 4.110482 GCAGCAGAGAATAAATTTGGCAG 58.890 43.478 0.00 0.00 0.00 4.85
5563 6849 7.946219 ACAGCAAATCCCAGATGATAAATGATA 59.054 33.333 0.00 0.00 0.00 2.15
5570 6856 3.117776 AGCACAGCAAATCCCAGATGATA 60.118 43.478 0.00 0.00 0.00 2.15
5877 7165 2.959516 TCGCAAGAGTACAATGAGGTG 58.040 47.619 0.00 0.00 45.01 4.00
5902 7191 8.357402 GGAACAGTAACAAATTATCCAAACTGT 58.643 33.333 0.00 0.00 45.97 3.55
5921 7210 5.069516 AGCTGAAAATTTCACATGGAACAGT 59.930 36.000 4.03 0.00 37.37 3.55
5951 7240 7.571428 GCACAACTAGAAACCTTGAATACAGTC 60.571 40.741 0.00 0.00 0.00 3.51
5958 7247 4.335315 CAGTGCACAACTAGAAACCTTGAA 59.665 41.667 21.04 0.00 36.83 2.69
5969 7258 4.013728 AGAAAACCAACAGTGCACAACTA 58.986 39.130 21.04 0.00 36.83 2.24
5972 7261 3.951775 AAGAAAACCAACAGTGCACAA 57.048 38.095 21.04 0.00 0.00 3.33
5977 7266 7.117523 TGACAATTCAAAAGAAAACCAACAGTG 59.882 33.333 0.00 0.00 0.00 3.66
6047 7336 3.202906 TCTCACTTTCGAAACCCACTTG 58.797 45.455 6.47 0.00 0.00 3.16
6059 7348 2.410053 GCACGTGACATCTCTCACTTTC 59.590 50.000 22.23 0.00 38.79 2.62
6182 7471 4.046462 CCAATGCCTTCATTAGAAATGCG 58.954 43.478 0.00 0.00 40.74 4.73
6311 7600 0.962356 CCAGGTTGCCAGATGTCACC 60.962 60.000 0.00 0.00 0.00 4.02
6332 7621 2.545952 GCGGTCTGATCCAACGTATCAT 60.546 50.000 0.14 0.00 33.08 2.45
6380 7669 3.118775 GGAACCCACAAATAAATGGCTCC 60.119 47.826 0.00 0.00 34.37 4.70
6390 7679 1.688197 CAACTGCAGGAACCCACAAAT 59.312 47.619 19.93 0.00 0.00 2.32
6407 7696 1.005867 CCAGTTGGCCATGTGCAAC 60.006 57.895 6.09 0.00 43.89 4.17
6463 7755 5.104610 ACAGATGATGCCTGATCTTAACACT 60.105 40.000 0.00 0.00 35.69 3.55
6496 7788 6.592607 TCCACGATACTGACCTTAATTTTGAC 59.407 38.462 0.00 0.00 0.00 3.18
6536 7838 4.054780 ACTCTGTAGCTCGACACAAAAA 57.945 40.909 0.00 0.00 0.00 1.94
6565 7867 6.839124 TGTCTGATTGAGTTTTGCCATAAT 57.161 33.333 0.00 0.00 0.00 1.28
6567 7869 6.040278 TGTTTGTCTGATTGAGTTTTGCCATA 59.960 34.615 0.00 0.00 0.00 2.74
6568 7870 5.163426 TGTTTGTCTGATTGAGTTTTGCCAT 60.163 36.000 0.00 0.00 0.00 4.40
6569 7871 4.159321 TGTTTGTCTGATTGAGTTTTGCCA 59.841 37.500 0.00 0.00 0.00 4.92
6570 7872 4.681744 TGTTTGTCTGATTGAGTTTTGCC 58.318 39.130 0.00 0.00 0.00 4.52
6571 7873 6.833342 AATGTTTGTCTGATTGAGTTTTGC 57.167 33.333 0.00 0.00 0.00 3.68
6651 7954 3.444034 TCCATATCTAGCATCGGTAGCAC 59.556 47.826 0.00 0.00 34.13 4.40
6674 7977 7.550551 CCAATATCCATTCTCGCACATTATAGT 59.449 37.037 0.00 0.00 0.00 2.12
6710 8013 3.102972 ACTAGCCTGATGTGTGAGTCAT 58.897 45.455 0.00 0.00 0.00 3.06
6720 8023 2.797156 GCGACATACAACTAGCCTGATG 59.203 50.000 0.00 0.00 0.00 3.07
6758 8065 2.203584 AGCCCCAATCTCATTCAGAGT 58.796 47.619 0.00 0.00 44.98 3.24
6773 8080 5.010112 GCTCATCTTAATTTAAGGAAGCCCC 59.990 44.000 14.60 0.00 36.45 5.80
6811 8118 8.902540 ATCGAAACATAGAAAATGTAGGCATA 57.097 30.769 0.00 0.00 34.39 3.14
6816 8123 8.380644 ACAACGATCGAAACATAGAAAATGTAG 58.619 33.333 24.34 0.00 0.00 2.74
6850 8157 4.768968 AGGTCGCCACTAACTTTCTACTTA 59.231 41.667 0.00 0.00 0.00 2.24
6851 8158 3.577415 AGGTCGCCACTAACTTTCTACTT 59.423 43.478 0.00 0.00 0.00 2.24
6931 8401 7.757097 AAATAATTGCGTCACTACTCACTAG 57.243 36.000 0.00 0.00 0.00 2.57
6934 8404 6.846283 GCATAAATAATTGCGTCACTACTCAC 59.154 38.462 0.00 0.00 0.00 3.51
6935 8405 6.761242 AGCATAAATAATTGCGTCACTACTCA 59.239 34.615 0.00 0.00 43.61 3.41
6936 8406 7.178712 AGCATAAATAATTGCGTCACTACTC 57.821 36.000 0.00 0.00 43.61 2.59
6937 8407 7.065803 ACAAGCATAAATAATTGCGTCACTACT 59.934 33.333 0.00 0.00 43.61 2.57
6938 8408 7.186804 ACAAGCATAAATAATTGCGTCACTAC 58.813 34.615 0.00 0.00 43.61 2.73
6939 8409 7.315247 ACAAGCATAAATAATTGCGTCACTA 57.685 32.000 0.00 0.00 43.61 2.74
6940 8410 6.194796 ACAAGCATAAATAATTGCGTCACT 57.805 33.333 0.00 0.00 43.61 3.41
7007 8477 1.128200 CTTGGGATCACGGGTCCATA 58.872 55.000 8.29 0.00 37.49 2.74
7046 8516 0.748005 TTTGCGCCTTGGGATCTAGC 60.748 55.000 4.18 0.00 0.00 3.42
7105 8575 9.547753 GCTGGACTTATTTTCTTGAGTATATGA 57.452 33.333 0.00 0.00 0.00 2.15
7106 8576 8.778358 GGCTGGACTTATTTTCTTGAGTATATG 58.222 37.037 0.00 0.00 0.00 1.78
7142 8613 2.106683 CGGAACCGTGGAGATTGGC 61.107 63.158 4.99 0.00 34.35 4.52
7154 8625 0.802494 CACAACAGCCATACGGAACC 59.198 55.000 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.