Multiple sequence alignment - TraesCS5D01G259400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G259400 chr5D 100.000 3779 0 0 1 3779 365689937 365693715 0.000000e+00 6979
1 TraesCS5D01G259400 chr5D 95.575 113 5 0 3366 3478 68696996 68696884 8.340000e-42 182
2 TraesCS5D01G259400 chr5A 96.073 3540 114 13 248 3779 467374341 467377863 0.000000e+00 5744
3 TraesCS5D01G259400 chr5A 91.732 254 16 5 1 252 132628342 132628092 7.770000e-92 348
4 TraesCS5D01G259400 chr5A 94.118 119 5 2 3367 3484 308093339 308093222 3.000000e-41 180
5 TraesCS5D01G259400 chr5A 94.118 119 5 2 3367 3484 308179883 308179766 3.000000e-41 180
6 TraesCS5D01G259400 chr5B 95.937 3126 110 12 257 3369 432151194 432154315 0.000000e+00 5053
7 TraesCS5D01G259400 chr5B 96.753 308 7 2 3472 3779 432154313 432154617 9.360000e-141 510
8 TraesCS5D01G259400 chr5B 90.514 253 21 3 1 252 650118047 650117797 7.820000e-87 331
9 TraesCS5D01G259400 chr5B 94.118 119 4 2 3368 3486 617823369 617823484 1.080000e-40 178
10 TraesCS5D01G259400 chr2D 96.443 253 6 3 1 251 481992683 481992432 7.550000e-112 414
11 TraesCS5D01G259400 chr3B 95.635 252 10 1 1 251 679111352 679111603 1.630000e-108 403
12 TraesCS5D01G259400 chr7D 94.862 253 12 1 1 252 628602707 628602455 9.840000e-106 394
13 TraesCS5D01G259400 chr1A 91.016 256 22 1 1 255 556653774 556653519 1.000000e-90 344
14 TraesCS5D01G259400 chr4B 89.370 254 23 4 1 252 140210733 140210984 2.190000e-82 316
15 TraesCS5D01G259400 chr4B 97.273 110 3 0 3366 3475 87405116 87405225 1.790000e-43 187
16 TraesCS5D01G259400 chr4A 88.976 254 25 3 1 252 153768392 153768644 1.020000e-80 311
17 TraesCS5D01G259400 chr3D 87.879 264 27 5 1 262 565656210 565655950 4.740000e-79 305
18 TraesCS5D01G259400 chr3D 98.148 108 2 0 3367 3474 536331139 536331032 4.980000e-44 189
19 TraesCS5D01G259400 chr3D 93.333 120 6 2 3368 3486 44007437 44007319 3.880000e-40 176
20 TraesCS5D01G259400 chr7B 99.074 108 1 0 3367 3474 683101466 683101573 1.070000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G259400 chr5D 365689937 365693715 3778 False 6979.0 6979 100.000 1 3779 1 chr5D.!!$F1 3778
1 TraesCS5D01G259400 chr5A 467374341 467377863 3522 False 5744.0 5744 96.073 248 3779 1 chr5A.!!$F1 3531
2 TraesCS5D01G259400 chr5B 432151194 432154617 3423 False 2781.5 5053 96.345 257 3779 2 chr5B.!!$F2 3522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 803 0.248621 CCGCAATTCCGCTCAATTCC 60.249 55.0 0.0 0.0 0.0 3.01 F
791 804 0.589729 CGCAATTCCGCTCAATTCCG 60.590 55.0 0.0 0.0 0.0 4.30 F
1597 1621 0.109597 CCGTCCTGATTTTGTGCTGC 60.110 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1619 0.249868 CTTGAGGACCGTGACAAGCA 60.250 55.0 9.47 0.0 34.46 3.91 R
2094 2118 0.250038 CTACCACATCCCGCTCATGG 60.250 60.0 0.00 0.0 36.46 3.66 R
2948 2972 0.935898 CTGAATGCAGCGGATCTCAC 59.064 55.0 0.00 0.0 34.95 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.444600 AAAAATATATCACGTTACCTCTGTGTT 57.555 29.630 0.00 0.00 35.20 3.32
50 51 9.444600 AAAATATATCACGTTACCTCTGTGTTT 57.555 29.630 0.00 0.00 35.20 2.83
51 52 8.420374 AATATATCACGTTACCTCTGTGTTTG 57.580 34.615 0.00 0.00 35.20 2.93
52 53 2.206750 TCACGTTACCTCTGTGTTTGC 58.793 47.619 0.00 0.00 35.20 3.68
53 54 1.937223 CACGTTACCTCTGTGTTTGCA 59.063 47.619 0.00 0.00 0.00 4.08
54 55 2.548057 CACGTTACCTCTGTGTTTGCAT 59.452 45.455 0.00 0.00 0.00 3.96
55 56 2.548057 ACGTTACCTCTGTGTTTGCATG 59.452 45.455 0.00 0.00 0.00 4.06
56 57 2.548057 CGTTACCTCTGTGTTTGCATGT 59.452 45.455 0.00 0.00 0.00 3.21
57 58 3.743911 CGTTACCTCTGTGTTTGCATGTA 59.256 43.478 0.00 0.00 0.00 2.29
58 59 4.212425 CGTTACCTCTGTGTTTGCATGTAA 59.788 41.667 0.00 0.00 0.00 2.41
59 60 5.277586 CGTTACCTCTGTGTTTGCATGTAAA 60.278 40.000 4.71 4.71 0.00 2.01
60 61 6.567701 CGTTACCTCTGTGTTTGCATGTAAAT 60.568 38.462 12.26 0.00 0.00 1.40
61 62 7.360522 CGTTACCTCTGTGTTTGCATGTAAATA 60.361 37.037 12.26 6.93 0.00 1.40
62 63 6.892658 ACCTCTGTGTTTGCATGTAAATAA 57.107 33.333 12.26 1.74 0.00 1.40
63 64 7.466746 ACCTCTGTGTTTGCATGTAAATAAT 57.533 32.000 12.26 0.00 0.00 1.28
64 65 7.538575 ACCTCTGTGTTTGCATGTAAATAATC 58.461 34.615 12.26 0.34 0.00 1.75
65 66 7.394359 ACCTCTGTGTTTGCATGTAAATAATCT 59.606 33.333 12.26 0.00 0.00 2.40
66 67 7.699391 CCTCTGTGTTTGCATGTAAATAATCTG 59.301 37.037 12.26 3.84 0.00 2.90
67 68 7.537715 TCTGTGTTTGCATGTAAATAATCTGG 58.462 34.615 12.26 1.03 0.00 3.86
68 69 7.176515 TCTGTGTTTGCATGTAAATAATCTGGT 59.823 33.333 12.26 0.00 0.00 4.00
69 70 7.312154 TGTGTTTGCATGTAAATAATCTGGTC 58.688 34.615 12.26 0.00 0.00 4.02
70 71 7.040132 TGTGTTTGCATGTAAATAATCTGGTCA 60.040 33.333 12.26 0.00 0.00 4.02
71 72 7.273381 GTGTTTGCATGTAAATAATCTGGTCAC 59.727 37.037 12.26 8.31 0.00 3.67
72 73 7.040132 TGTTTGCATGTAAATAATCTGGTCACA 60.040 33.333 12.26 0.00 0.00 3.58
73 74 7.643569 TTGCATGTAAATAATCTGGTCACAT 57.356 32.000 0.00 0.00 0.00 3.21
74 75 8.744568 TTGCATGTAAATAATCTGGTCACATA 57.255 30.769 0.00 0.00 0.00 2.29
75 76 8.153479 TGCATGTAAATAATCTGGTCACATAC 57.847 34.615 0.00 0.00 0.00 2.39
76 77 7.992608 TGCATGTAAATAATCTGGTCACATACT 59.007 33.333 0.00 0.00 0.00 2.12
77 78 8.285394 GCATGTAAATAATCTGGTCACATACTG 58.715 37.037 0.00 0.00 0.00 2.74
78 79 9.330063 CATGTAAATAATCTGGTCACATACTGT 57.670 33.333 0.00 0.00 0.00 3.55
80 81 9.811995 TGTAAATAATCTGGTCACATACTGTAC 57.188 33.333 0.00 0.00 0.00 2.90
84 85 6.716934 AATCTGGTCACATACTGTACTAGG 57.283 41.667 0.00 0.00 0.00 3.02
85 86 4.533815 TCTGGTCACATACTGTACTAGGG 58.466 47.826 0.00 0.00 0.00 3.53
86 87 3.637229 CTGGTCACATACTGTACTAGGGG 59.363 52.174 0.00 0.00 0.00 4.79
87 88 3.012047 TGGTCACATACTGTACTAGGGGT 59.988 47.826 0.00 0.00 0.00 4.95
88 89 4.230272 TGGTCACATACTGTACTAGGGGTA 59.770 45.833 0.00 0.00 0.00 3.69
89 90 5.203528 GGTCACATACTGTACTAGGGGTAA 58.796 45.833 0.00 0.00 31.56 2.85
90 91 5.658190 GGTCACATACTGTACTAGGGGTAAA 59.342 44.000 0.00 0.00 31.56 2.01
91 92 6.155049 GGTCACATACTGTACTAGGGGTAAAA 59.845 42.308 0.00 0.00 31.56 1.52
92 93 7.038048 GTCACATACTGTACTAGGGGTAAAAC 58.962 42.308 0.00 0.00 31.56 2.43
93 94 6.725369 TCACATACTGTACTAGGGGTAAAACA 59.275 38.462 0.00 0.00 31.56 2.83
94 95 7.039882 CACATACTGTACTAGGGGTAAAACAG 58.960 42.308 0.00 0.00 37.78 3.16
95 96 6.727697 ACATACTGTACTAGGGGTAAAACAGT 59.272 38.462 10.39 10.39 43.48 3.55
96 97 5.735285 ACTGTACTAGGGGTAAAACAGTC 57.265 43.478 0.30 0.00 39.60 3.51
97 98 5.400870 ACTGTACTAGGGGTAAAACAGTCT 58.599 41.667 0.30 0.00 39.60 3.24
98 99 5.842874 ACTGTACTAGGGGTAAAACAGTCTT 59.157 40.000 0.30 0.00 39.60 3.01
99 100 6.328410 ACTGTACTAGGGGTAAAACAGTCTTT 59.672 38.462 0.30 0.00 39.60 2.52
100 101 7.140522 TGTACTAGGGGTAAAACAGTCTTTT 57.859 36.000 0.00 0.00 31.56 2.27
101 102 7.576403 TGTACTAGGGGTAAAACAGTCTTTTT 58.424 34.615 0.00 0.00 33.27 1.94
102 103 8.713036 TGTACTAGGGGTAAAACAGTCTTTTTA 58.287 33.333 0.00 0.00 31.15 1.52
103 104 9.212641 GTACTAGGGGTAAAACAGTCTTTTTAG 57.787 37.037 0.00 0.00 32.77 1.85
104 105 8.037723 ACTAGGGGTAAAACAGTCTTTTTAGA 57.962 34.615 0.00 0.00 32.77 2.10
105 106 8.666821 ACTAGGGGTAAAACAGTCTTTTTAGAT 58.333 33.333 0.00 0.00 32.77 1.98
106 107 7.997773 AGGGGTAAAACAGTCTTTTTAGATC 57.002 36.000 0.00 0.00 32.77 2.75
107 108 7.523415 AGGGGTAAAACAGTCTTTTTAGATCA 58.477 34.615 0.00 0.00 32.77 2.92
108 109 7.665974 AGGGGTAAAACAGTCTTTTTAGATCAG 59.334 37.037 0.00 0.00 32.77 2.90
109 110 7.664318 GGGGTAAAACAGTCTTTTTAGATCAGA 59.336 37.037 0.00 0.00 32.77 3.27
110 111 8.504815 GGGTAAAACAGTCTTTTTAGATCAGAC 58.495 37.037 0.00 0.00 37.76 3.51
111 112 9.274206 GGTAAAACAGTCTTTTTAGATCAGACT 57.726 33.333 6.80 6.80 46.73 3.24
116 117 9.832445 AACAGTCTTTTTAGATCAGACTTAACA 57.168 29.630 9.36 0.00 43.97 2.41
117 118 9.262358 ACAGTCTTTTTAGATCAGACTTAACAC 57.738 33.333 9.36 0.00 43.97 3.32
118 119 8.713271 CAGTCTTTTTAGATCAGACTTAACACC 58.287 37.037 9.36 0.00 43.97 4.16
119 120 7.599245 AGTCTTTTTAGATCAGACTTAACACCG 59.401 37.037 6.80 0.00 43.97 4.94
120 121 7.384387 GTCTTTTTAGATCAGACTTAACACCGT 59.616 37.037 0.00 0.00 35.10 4.83
121 122 7.929785 TCTTTTTAGATCAGACTTAACACCGTT 59.070 33.333 0.00 0.00 0.00 4.44
122 123 9.199982 CTTTTTAGATCAGACTTAACACCGTTA 57.800 33.333 0.00 0.00 0.00 3.18
123 124 9.715121 TTTTTAGATCAGACTTAACACCGTTAT 57.285 29.630 0.00 0.00 0.00 1.89
124 125 9.715121 TTTTAGATCAGACTTAACACCGTTATT 57.285 29.630 0.00 0.00 0.00 1.40
127 128 6.979238 AGATCAGACTTAACACCGTTATTAGC 59.021 38.462 0.00 0.00 0.00 3.09
128 129 5.413499 TCAGACTTAACACCGTTATTAGCC 58.587 41.667 0.00 0.00 0.00 3.93
129 130 5.047164 TCAGACTTAACACCGTTATTAGCCA 60.047 40.000 0.00 0.00 0.00 4.75
130 131 5.640357 CAGACTTAACACCGTTATTAGCCAA 59.360 40.000 0.00 0.00 0.00 4.52
131 132 6.148150 CAGACTTAACACCGTTATTAGCCAAA 59.852 38.462 0.00 0.00 0.00 3.28
132 133 6.711645 AGACTTAACACCGTTATTAGCCAAAA 59.288 34.615 0.00 0.00 0.00 2.44
133 134 6.671190 ACTTAACACCGTTATTAGCCAAAAC 58.329 36.000 0.00 0.00 0.00 2.43
134 135 6.487668 ACTTAACACCGTTATTAGCCAAAACT 59.512 34.615 0.00 0.00 0.00 2.66
135 136 4.759516 ACACCGTTATTAGCCAAAACTG 57.240 40.909 0.00 0.00 0.00 3.16
136 137 4.391155 ACACCGTTATTAGCCAAAACTGA 58.609 39.130 0.00 0.00 0.00 3.41
137 138 4.214758 ACACCGTTATTAGCCAAAACTGAC 59.785 41.667 0.00 0.00 0.00 3.51
138 139 3.434299 ACCGTTATTAGCCAAAACTGACG 59.566 43.478 0.00 0.00 0.00 4.35
139 140 3.181514 CCGTTATTAGCCAAAACTGACGG 60.182 47.826 0.00 0.00 41.01 4.79
140 141 3.680937 CGTTATTAGCCAAAACTGACGGA 59.319 43.478 0.00 0.00 0.00 4.69
141 142 4.152759 CGTTATTAGCCAAAACTGACGGAA 59.847 41.667 0.00 0.00 0.00 4.30
142 143 5.628134 GTTATTAGCCAAAACTGACGGAAG 58.372 41.667 0.00 0.00 0.00 3.46
176 177 8.062065 AGGAACAAAATAAAGTTTGAGTGTCA 57.938 30.769 9.62 0.00 40.29 3.58
177 178 8.527810 AGGAACAAAATAAAGTTTGAGTGTCAA 58.472 29.630 9.62 0.00 40.29 3.18
178 179 9.145865 GGAACAAAATAAAGTTTGAGTGTCAAA 57.854 29.630 9.62 0.00 43.37 2.69
217 218 6.739331 TTTTTAGAGCCAAAAAGGGAATCA 57.261 33.333 0.00 0.00 38.09 2.57
218 219 6.739331 TTTTAGAGCCAAAAAGGGAATCAA 57.261 33.333 0.00 0.00 38.09 2.57
219 220 6.739331 TTTAGAGCCAAAAAGGGAATCAAA 57.261 33.333 0.00 0.00 38.09 2.69
220 221 6.933514 TTAGAGCCAAAAAGGGAATCAAAT 57.066 33.333 0.00 0.00 38.09 2.32
221 222 5.830799 AGAGCCAAAAAGGGAATCAAATT 57.169 34.783 0.00 0.00 38.09 1.82
222 223 6.191657 AGAGCCAAAAAGGGAATCAAATTT 57.808 33.333 0.00 0.00 38.09 1.82
223 224 6.604171 AGAGCCAAAAAGGGAATCAAATTTT 58.396 32.000 0.00 0.00 38.09 1.82
224 225 7.744733 AGAGCCAAAAAGGGAATCAAATTTTA 58.255 30.769 0.00 0.00 38.09 1.52
225 226 8.217111 AGAGCCAAAAAGGGAATCAAATTTTAA 58.783 29.630 0.00 0.00 38.09 1.52
226 227 8.394971 AGCCAAAAAGGGAATCAAATTTTAAG 57.605 30.769 0.00 0.00 38.09 1.85
227 228 8.217111 AGCCAAAAAGGGAATCAAATTTTAAGA 58.783 29.630 0.00 0.00 38.09 2.10
228 229 8.845227 GCCAAAAAGGGAATCAAATTTTAAGAA 58.155 29.630 0.00 0.00 38.09 2.52
232 233 9.573166 AAAAGGGAATCAAATTTTAAGAAAGGG 57.427 29.630 0.00 0.00 0.00 3.95
233 234 6.711277 AGGGAATCAAATTTTAAGAAAGGGC 58.289 36.000 0.00 0.00 0.00 5.19
234 235 5.880332 GGGAATCAAATTTTAAGAAAGGGCC 59.120 40.000 0.00 0.00 0.00 5.80
235 236 6.472016 GGAATCAAATTTTAAGAAAGGGCCA 58.528 36.000 6.18 0.00 0.00 5.36
236 237 6.939730 GGAATCAAATTTTAAGAAAGGGCCAA 59.060 34.615 6.18 0.00 0.00 4.52
237 238 7.446931 GGAATCAAATTTTAAGAAAGGGCCAAA 59.553 33.333 6.18 0.00 0.00 3.28
238 239 8.938801 AATCAAATTTTAAGAAAGGGCCAAAT 57.061 26.923 6.18 0.00 0.00 2.32
241 242 9.500785 TCAAATTTTAAGAAAGGGCCAAATAAG 57.499 29.630 6.18 0.00 0.00 1.73
242 243 8.729756 CAAATTTTAAGAAAGGGCCAAATAAGG 58.270 33.333 6.18 0.00 0.00 2.69
243 244 7.806680 ATTTTAAGAAAGGGCCAAATAAGGA 57.193 32.000 6.18 0.00 0.00 3.36
244 245 7.619512 TTTTAAGAAAGGGCCAAATAAGGAA 57.380 32.000 6.18 0.00 0.00 3.36
245 246 7.806680 TTTAAGAAAGGGCCAAATAAGGAAT 57.193 32.000 6.18 0.00 0.00 3.01
246 247 7.806680 TTAAGAAAGGGCCAAATAAGGAATT 57.193 32.000 6.18 0.00 0.00 2.17
247 248 5.939764 AGAAAGGGCCAAATAAGGAATTC 57.060 39.130 6.18 0.00 0.00 2.17
248 249 5.593786 AGAAAGGGCCAAATAAGGAATTCT 58.406 37.500 6.18 0.00 0.00 2.40
249 250 5.658634 AGAAAGGGCCAAATAAGGAATTCTC 59.341 40.000 6.18 0.00 0.00 2.87
250 251 4.888626 AGGGCCAAATAAGGAATTCTCT 57.111 40.909 6.18 0.00 0.00 3.10
251 252 4.797743 AGGGCCAAATAAGGAATTCTCTC 58.202 43.478 6.18 0.00 0.00 3.20
252 253 3.891977 GGGCCAAATAAGGAATTCTCTCC 59.108 47.826 4.39 0.00 35.51 3.71
254 255 5.163088 GGGCCAAATAAGGAATTCTCTCCTA 60.163 44.000 4.39 0.00 45.59 2.94
326 328 2.194597 GGCCGGCATAATGGGTCA 59.805 61.111 30.85 0.00 0.00 4.02
365 367 1.367659 GTGCAACTGATGAGCCTCTC 58.632 55.000 0.00 0.00 0.00 3.20
374 376 1.830477 GATGAGCCTCTCTTGTCCTGT 59.170 52.381 0.00 0.00 0.00 4.00
428 430 3.181461 GCCCATATCTATCCTTGCGCTAT 60.181 47.826 9.73 0.00 0.00 2.97
457 459 0.948678 CACGTCGTCCCCACAAATTT 59.051 50.000 0.00 0.00 0.00 1.82
466 468 0.665972 CCCACAAATTTTCGGCGTGG 60.666 55.000 14.70 14.70 45.46 4.94
525 527 1.302993 TCGCTGTTGGGTAAAGGGC 60.303 57.895 0.00 0.00 0.00 5.19
644 647 2.030562 CGTCCAGAAAGCACCCGT 59.969 61.111 0.00 0.00 0.00 5.28
784 797 0.743345 AAGGTACCGCAATTCCGCTC 60.743 55.000 6.18 0.00 0.00 5.03
785 798 1.448893 GGTACCGCAATTCCGCTCA 60.449 57.895 0.00 0.00 0.00 4.26
786 799 1.022451 GGTACCGCAATTCCGCTCAA 61.022 55.000 0.00 0.00 0.00 3.02
787 800 1.014352 GTACCGCAATTCCGCTCAAT 58.986 50.000 0.00 0.00 0.00 2.57
788 801 1.400494 GTACCGCAATTCCGCTCAATT 59.600 47.619 0.00 0.00 0.00 2.32
789 802 0.451783 ACCGCAATTCCGCTCAATTC 59.548 50.000 0.00 0.00 0.00 2.17
790 803 0.248621 CCGCAATTCCGCTCAATTCC 60.249 55.000 0.00 0.00 0.00 3.01
791 804 0.589729 CGCAATTCCGCTCAATTCCG 60.590 55.000 0.00 0.00 0.00 4.30
792 805 0.867329 GCAATTCCGCTCAATTCCGC 60.867 55.000 0.00 0.00 0.00 5.54
793 806 0.734889 CAATTCCGCTCAATTCCGCT 59.265 50.000 0.00 0.00 0.00 5.52
907 921 4.446857 TCTGTTTCGTTTTTGCTAGACG 57.553 40.909 0.00 0.00 38.09 4.18
937 955 1.292223 GTACTCACAGCGGAGGCAA 59.708 57.895 7.77 0.00 43.41 4.52
961 985 3.278668 TCGTGTAGAGGGAAGAGTAGG 57.721 52.381 0.00 0.00 0.00 3.18
964 988 1.574339 TGTAGAGGGAAGAGTAGGGGG 59.426 57.143 0.00 0.00 0.00 5.40
975 999 0.860901 AGTAGGGGGAAGGGAGGAGT 60.861 60.000 0.00 0.00 0.00 3.85
1245 1269 3.151022 CTCCGCCTGACCTCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
1267 1291 3.417275 CTCCGCCACTACCTCGCTG 62.417 68.421 0.00 0.00 0.00 5.18
1595 1619 1.202758 TGTCCGTCCTGATTTTGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
1597 1621 0.109597 CCGTCCTGATTTTGTGCTGC 60.110 55.000 0.00 0.00 0.00 5.25
1605 1629 2.046313 GATTTTGTGCTGCTTGTCACG 58.954 47.619 0.00 0.00 36.06 4.35
1683 1707 0.690762 TGGTAGTCAAGGGTGGCTTC 59.309 55.000 0.00 0.00 35.70 3.86
1687 1711 0.693049 AGTCAAGGGTGGCTTCGATT 59.307 50.000 0.00 0.00 35.70 3.34
1710 1734 2.611751 TGAACAAGATGTTGTGACCACG 59.388 45.455 9.27 0.00 46.68 4.94
1711 1735 2.325583 ACAAGATGTTGTGACCACGT 57.674 45.000 7.55 0.00 45.58 4.49
1843 1867 3.737172 CCAAGAACGGGCTTGCCG 61.737 66.667 12.42 0.00 42.99 5.69
2094 2118 0.874390 TCTTTGAACAGATGCGTGCC 59.126 50.000 0.00 0.00 0.00 5.01
2172 2196 1.630126 ATCTCGCTGAGGCCATTGGT 61.630 55.000 5.01 0.00 34.44 3.67
2193 2217 3.817647 GTCTGTTTGAGGACATGAAGCTT 59.182 43.478 0.00 0.00 33.19 3.74
2646 2670 1.033746 CAACCGGATGCAGCTCCATT 61.034 55.000 9.46 0.00 34.78 3.16
2948 2972 9.465985 AAAATAAACAAAACATACCAGGTTACG 57.534 29.630 0.00 0.00 0.00 3.18
2949 2973 7.748691 ATAAACAAAACATACCAGGTTACGT 57.251 32.000 0.00 0.00 0.00 3.57
3049 3075 7.596749 TTTTTATGTAGCAGAGTTAGCTGTC 57.403 36.000 0.00 0.00 43.33 3.51
3276 3302 4.900635 AAGTTGTGACCTCAATTGTGTC 57.099 40.909 18.05 18.05 0.00 3.67
3464 3490 9.493206 GTCTGAAACGTCTTATAAAAACAAACA 57.507 29.630 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.444600 AACACAGAGGTAACGTGATATATTTTT 57.555 29.630 0.00 0.00 46.39 1.94
24 25 9.444600 AAACACAGAGGTAACGTGATATATTTT 57.555 29.630 0.00 0.00 46.39 1.82
25 26 8.879759 CAAACACAGAGGTAACGTGATATATTT 58.120 33.333 0.00 0.00 46.39 1.40
26 27 7.011109 GCAAACACAGAGGTAACGTGATATATT 59.989 37.037 0.00 0.00 46.39 1.28
27 28 6.479001 GCAAACACAGAGGTAACGTGATATAT 59.521 38.462 0.00 0.00 46.39 0.86
28 29 5.808540 GCAAACACAGAGGTAACGTGATATA 59.191 40.000 0.00 0.00 46.39 0.86
29 30 4.630069 GCAAACACAGAGGTAACGTGATAT 59.370 41.667 0.00 0.00 46.39 1.63
30 31 3.991773 GCAAACACAGAGGTAACGTGATA 59.008 43.478 0.00 0.00 46.39 2.15
31 32 2.806244 GCAAACACAGAGGTAACGTGAT 59.194 45.455 0.00 0.00 46.39 3.06
32 33 2.206750 GCAAACACAGAGGTAACGTGA 58.793 47.619 0.00 0.00 46.39 4.35
33 34 1.937223 TGCAAACACAGAGGTAACGTG 59.063 47.619 0.00 0.00 46.39 4.49
34 35 2.319136 TGCAAACACAGAGGTAACGT 57.681 45.000 0.00 0.00 46.39 3.99
35 36 2.548057 ACATGCAAACACAGAGGTAACG 59.452 45.455 0.00 0.00 46.39 3.18
36 37 5.682943 TTACATGCAAACACAGAGGTAAC 57.317 39.130 0.00 0.00 0.00 2.50
37 38 6.892658 ATTTACATGCAAACACAGAGGTAA 57.107 33.333 0.00 0.00 0.00 2.85
38 39 7.987750 TTATTTACATGCAAACACAGAGGTA 57.012 32.000 0.00 0.00 0.00 3.08
39 40 6.892658 TTATTTACATGCAAACACAGAGGT 57.107 33.333 0.00 0.00 0.00 3.85
40 41 7.699391 CAGATTATTTACATGCAAACACAGAGG 59.301 37.037 0.00 0.00 0.00 3.69
41 42 7.699391 CCAGATTATTTACATGCAAACACAGAG 59.301 37.037 0.00 0.00 0.00 3.35
42 43 7.176515 ACCAGATTATTTACATGCAAACACAGA 59.823 33.333 0.00 0.00 0.00 3.41
43 44 7.315142 ACCAGATTATTTACATGCAAACACAG 58.685 34.615 0.00 0.00 0.00 3.66
44 45 7.040132 TGACCAGATTATTTACATGCAAACACA 60.040 33.333 0.00 0.00 0.00 3.72
45 46 7.273381 GTGACCAGATTATTTACATGCAAACAC 59.727 37.037 0.00 0.00 0.00 3.32
46 47 7.040132 TGTGACCAGATTATTTACATGCAAACA 60.040 33.333 0.00 0.00 0.00 2.83
47 48 7.312154 TGTGACCAGATTATTTACATGCAAAC 58.688 34.615 0.00 0.00 0.00 2.93
48 49 7.459795 TGTGACCAGATTATTTACATGCAAA 57.540 32.000 0.00 0.00 0.00 3.68
49 50 7.643569 ATGTGACCAGATTATTTACATGCAA 57.356 32.000 0.00 0.00 0.00 4.08
50 51 7.992608 AGTATGTGACCAGATTATTTACATGCA 59.007 33.333 0.00 0.00 33.87 3.96
51 52 8.285394 CAGTATGTGACCAGATTATTTACATGC 58.715 37.037 0.00 0.00 32.34 4.06
71 72 7.123847 AGACTGTTTTACCCCTAGTACAGTATG 59.876 40.741 0.00 0.00 36.46 2.39
72 73 7.187676 AGACTGTTTTACCCCTAGTACAGTAT 58.812 38.462 0.00 0.00 36.46 2.12
73 74 6.555711 AGACTGTTTTACCCCTAGTACAGTA 58.444 40.000 0.00 0.00 36.46 2.74
74 75 5.400870 AGACTGTTTTACCCCTAGTACAGT 58.599 41.667 0.00 0.00 38.08 3.55
75 76 5.997384 AGACTGTTTTACCCCTAGTACAG 57.003 43.478 0.00 0.00 31.83 2.74
76 77 6.752285 AAAGACTGTTTTACCCCTAGTACA 57.248 37.500 0.00 0.00 0.00 2.90
77 78 9.212641 CTAAAAAGACTGTTTTACCCCTAGTAC 57.787 37.037 0.00 0.00 32.95 2.73
78 79 9.158097 TCTAAAAAGACTGTTTTACCCCTAGTA 57.842 33.333 0.00 0.00 32.95 1.82
79 80 8.037723 TCTAAAAAGACTGTTTTACCCCTAGT 57.962 34.615 0.00 0.00 32.95 2.57
80 81 9.163899 GATCTAAAAAGACTGTTTTACCCCTAG 57.836 37.037 0.00 0.00 32.95 3.02
81 82 8.662255 TGATCTAAAAAGACTGTTTTACCCCTA 58.338 33.333 0.00 0.00 32.95 3.53
82 83 7.523415 TGATCTAAAAAGACTGTTTTACCCCT 58.477 34.615 0.00 0.00 32.95 4.79
83 84 7.664318 TCTGATCTAAAAAGACTGTTTTACCCC 59.336 37.037 0.00 0.00 32.95 4.95
84 85 8.504815 GTCTGATCTAAAAAGACTGTTTTACCC 58.495 37.037 0.00 0.00 37.84 3.69
85 86 9.274206 AGTCTGATCTAAAAAGACTGTTTTACC 57.726 33.333 10.89 0.00 46.81 2.85
94 95 7.384387 ACGGTGTTAAGTCTGATCTAAAAAGAC 59.616 37.037 2.65 2.65 40.53 3.01
95 96 7.439381 ACGGTGTTAAGTCTGATCTAAAAAGA 58.561 34.615 0.00 0.00 0.00 2.52
96 97 7.653767 ACGGTGTTAAGTCTGATCTAAAAAG 57.346 36.000 0.00 0.00 0.00 2.27
97 98 9.715121 ATAACGGTGTTAAGTCTGATCTAAAAA 57.285 29.630 0.00 0.00 0.00 1.94
98 99 9.715121 AATAACGGTGTTAAGTCTGATCTAAAA 57.285 29.630 0.00 0.00 0.00 1.52
101 102 8.133627 GCTAATAACGGTGTTAAGTCTGATCTA 58.866 37.037 0.00 0.00 0.00 1.98
102 103 6.979238 GCTAATAACGGTGTTAAGTCTGATCT 59.021 38.462 0.00 0.00 0.00 2.75
103 104 6.200475 GGCTAATAACGGTGTTAAGTCTGATC 59.800 42.308 0.00 0.00 0.00 2.92
104 105 6.047231 GGCTAATAACGGTGTTAAGTCTGAT 58.953 40.000 0.00 0.00 0.00 2.90
105 106 5.047164 TGGCTAATAACGGTGTTAAGTCTGA 60.047 40.000 0.00 0.00 0.00 3.27
106 107 5.172934 TGGCTAATAACGGTGTTAAGTCTG 58.827 41.667 0.00 0.00 0.00 3.51
107 108 5.410355 TGGCTAATAACGGTGTTAAGTCT 57.590 39.130 0.00 0.00 0.00 3.24
108 109 6.484818 TTTGGCTAATAACGGTGTTAAGTC 57.515 37.500 0.00 0.00 0.00 3.01
109 110 6.487668 AGTTTTGGCTAATAACGGTGTTAAGT 59.512 34.615 0.00 0.00 0.00 2.24
110 111 6.799925 CAGTTTTGGCTAATAACGGTGTTAAG 59.200 38.462 0.00 0.00 0.00 1.85
111 112 6.485984 TCAGTTTTGGCTAATAACGGTGTTAA 59.514 34.615 0.00 0.00 0.00 2.01
112 113 5.996513 TCAGTTTTGGCTAATAACGGTGTTA 59.003 36.000 0.00 0.00 0.00 2.41
113 114 4.822896 TCAGTTTTGGCTAATAACGGTGTT 59.177 37.500 0.00 0.00 0.00 3.32
114 115 4.214758 GTCAGTTTTGGCTAATAACGGTGT 59.785 41.667 0.00 0.00 0.00 4.16
115 116 4.668177 CGTCAGTTTTGGCTAATAACGGTG 60.668 45.833 0.00 2.02 0.00 4.94
116 117 3.434299 CGTCAGTTTTGGCTAATAACGGT 59.566 43.478 0.00 0.00 0.00 4.83
117 118 3.181514 CCGTCAGTTTTGGCTAATAACGG 60.182 47.826 0.00 0.00 40.80 4.44
118 119 3.680937 TCCGTCAGTTTTGGCTAATAACG 59.319 43.478 0.00 0.00 0.00 3.18
119 120 5.180680 ACTTCCGTCAGTTTTGGCTAATAAC 59.819 40.000 0.00 0.00 0.00 1.89
120 121 5.180492 CACTTCCGTCAGTTTTGGCTAATAA 59.820 40.000 0.00 0.00 0.00 1.40
121 122 4.693566 CACTTCCGTCAGTTTTGGCTAATA 59.306 41.667 0.00 0.00 0.00 0.98
122 123 3.502211 CACTTCCGTCAGTTTTGGCTAAT 59.498 43.478 0.00 0.00 0.00 1.73
123 124 2.875933 CACTTCCGTCAGTTTTGGCTAA 59.124 45.455 0.00 0.00 0.00 3.09
124 125 2.158871 ACACTTCCGTCAGTTTTGGCTA 60.159 45.455 0.00 0.00 0.00 3.93
125 126 1.308998 CACTTCCGTCAGTTTTGGCT 58.691 50.000 0.00 0.00 0.00 4.75
126 127 1.021968 ACACTTCCGTCAGTTTTGGC 58.978 50.000 0.00 0.00 0.00 4.52
127 128 6.737254 ATATAACACTTCCGTCAGTTTTGG 57.263 37.500 0.00 0.00 0.00 3.28
128 129 7.762615 TCCTATATAACACTTCCGTCAGTTTTG 59.237 37.037 0.00 0.00 0.00 2.44
129 130 7.844009 TCCTATATAACACTTCCGTCAGTTTT 58.156 34.615 0.00 0.00 0.00 2.43
130 131 7.414222 TCCTATATAACACTTCCGTCAGTTT 57.586 36.000 0.00 0.00 0.00 2.66
131 132 7.093640 TGTTCCTATATAACACTTCCGTCAGTT 60.094 37.037 0.00 0.00 32.07 3.16
132 133 6.379133 TGTTCCTATATAACACTTCCGTCAGT 59.621 38.462 0.00 0.00 32.07 3.41
133 134 6.802608 TGTTCCTATATAACACTTCCGTCAG 58.197 40.000 0.00 0.00 32.07 3.51
134 135 6.778834 TGTTCCTATATAACACTTCCGTCA 57.221 37.500 0.00 0.00 32.07 4.35
135 136 8.483307 TTTTGTTCCTATATAACACTTCCGTC 57.517 34.615 1.36 0.00 36.61 4.79
150 151 9.179909 TGACACTCAAACTTTATTTTGTTCCTA 57.820 29.630 0.00 0.00 37.66 2.94
151 152 8.062065 TGACACTCAAACTTTATTTTGTTCCT 57.938 30.769 0.00 0.00 37.66 3.36
152 153 8.696410 TTGACACTCAAACTTTATTTTGTTCC 57.304 30.769 0.00 0.00 37.66 3.62
194 195 6.739331 TGATTCCCTTTTTGGCTCTAAAAA 57.261 33.333 4.31 4.31 37.23 1.94
195 196 6.739331 TTGATTCCCTTTTTGGCTCTAAAA 57.261 33.333 0.00 0.00 0.00 1.52
196 197 6.739331 TTTGATTCCCTTTTTGGCTCTAAA 57.261 33.333 0.00 0.00 0.00 1.85
197 198 6.933514 ATTTGATTCCCTTTTTGGCTCTAA 57.066 33.333 0.00 0.00 0.00 2.10
198 199 6.933514 AATTTGATTCCCTTTTTGGCTCTA 57.066 33.333 0.00 0.00 0.00 2.43
199 200 5.830799 AATTTGATTCCCTTTTTGGCTCT 57.169 34.783 0.00 0.00 0.00 4.09
200 201 6.882610 AAAATTTGATTCCCTTTTTGGCTC 57.117 33.333 0.00 0.00 0.00 4.70
201 202 8.217111 TCTTAAAATTTGATTCCCTTTTTGGCT 58.783 29.630 0.00 0.00 0.00 4.75
202 203 8.389779 TCTTAAAATTTGATTCCCTTTTTGGC 57.610 30.769 0.00 0.00 0.00 4.52
206 207 9.573166 CCCTTTCTTAAAATTTGATTCCCTTTT 57.427 29.630 0.00 0.00 0.00 2.27
207 208 7.665559 GCCCTTTCTTAAAATTTGATTCCCTTT 59.334 33.333 0.00 0.00 0.00 3.11
208 209 7.168219 GCCCTTTCTTAAAATTTGATTCCCTT 58.832 34.615 0.00 0.00 0.00 3.95
209 210 6.296432 GGCCCTTTCTTAAAATTTGATTCCCT 60.296 38.462 0.00 0.00 0.00 4.20
210 211 5.880332 GGCCCTTTCTTAAAATTTGATTCCC 59.120 40.000 0.00 0.00 0.00 3.97
211 212 6.472016 TGGCCCTTTCTTAAAATTTGATTCC 58.528 36.000 0.00 0.00 0.00 3.01
212 213 7.977789 TTGGCCCTTTCTTAAAATTTGATTC 57.022 32.000 0.00 0.00 0.00 2.52
213 214 8.938801 ATTTGGCCCTTTCTTAAAATTTGATT 57.061 26.923 0.00 0.00 0.00 2.57
215 216 9.500785 CTTATTTGGCCCTTTCTTAAAATTTGA 57.499 29.630 0.00 0.00 0.00 2.69
216 217 8.729756 CCTTATTTGGCCCTTTCTTAAAATTTG 58.270 33.333 0.00 0.00 0.00 2.32
217 218 8.664992 TCCTTATTTGGCCCTTTCTTAAAATTT 58.335 29.630 0.00 0.00 0.00 1.82
218 219 8.213489 TCCTTATTTGGCCCTTTCTTAAAATT 57.787 30.769 0.00 0.00 0.00 1.82
219 220 7.806680 TCCTTATTTGGCCCTTTCTTAAAAT 57.193 32.000 0.00 0.00 0.00 1.82
220 221 7.619512 TTCCTTATTTGGCCCTTTCTTAAAA 57.380 32.000 0.00 0.00 0.00 1.52
221 222 7.806680 ATTCCTTATTTGGCCCTTTCTTAAA 57.193 32.000 0.00 0.00 0.00 1.52
222 223 7.678171 AGAATTCCTTATTTGGCCCTTTCTTAA 59.322 33.333 0.00 0.00 0.00 1.85
223 224 7.189087 AGAATTCCTTATTTGGCCCTTTCTTA 58.811 34.615 0.00 0.00 0.00 2.10
224 225 6.025539 AGAATTCCTTATTTGGCCCTTTCTT 58.974 36.000 0.00 0.00 0.00 2.52
225 226 5.593786 AGAATTCCTTATTTGGCCCTTTCT 58.406 37.500 0.00 0.00 0.00 2.52
226 227 5.658634 AGAGAATTCCTTATTTGGCCCTTTC 59.341 40.000 0.00 0.00 0.00 2.62
227 228 5.593786 AGAGAATTCCTTATTTGGCCCTTT 58.406 37.500 0.00 0.00 0.00 3.11
228 229 5.204292 GAGAGAATTCCTTATTTGGCCCTT 58.796 41.667 0.00 0.00 0.00 3.95
229 230 4.386873 GGAGAGAATTCCTTATTTGGCCCT 60.387 45.833 0.00 0.00 34.27 5.19
230 231 3.891977 GGAGAGAATTCCTTATTTGGCCC 59.108 47.826 0.00 0.00 34.27 5.80
231 232 4.797743 AGGAGAGAATTCCTTATTTGGCC 58.202 43.478 0.65 0.00 45.35 5.36
232 233 6.596621 AGTAGGAGAGAATTCCTTATTTGGC 58.403 40.000 0.65 0.00 45.35 4.52
233 234 9.467796 AAAAGTAGGAGAGAATTCCTTATTTGG 57.532 33.333 0.65 0.00 45.35 3.28
265 266 1.133407 CTCGCCCACTCTGTAGTTCTC 59.867 57.143 0.00 0.00 31.97 2.87
302 304 1.453745 ATTATGCCGGCCCACACAG 60.454 57.895 26.77 0.00 0.00 3.66
365 367 0.602905 GGACGGGTGAACAGGACAAG 60.603 60.000 0.00 0.00 0.00 3.16
374 376 2.433146 TTCACGTGGGACGGGTGAA 61.433 57.895 17.00 2.02 46.74 3.18
428 430 4.150203 ACGACGTGTGTGTGGCCA 62.150 61.111 0.00 0.00 0.00 5.36
525 527 1.153429 CCTTTAGCTCGTTCCCGGG 60.153 63.158 16.85 16.85 37.72 5.73
784 797 2.276201 TCGTGGATTACAGCGGAATTG 58.724 47.619 0.00 0.00 0.00 2.32
785 798 2.550978 CTCGTGGATTACAGCGGAATT 58.449 47.619 0.00 0.00 0.00 2.17
786 799 1.806623 GCTCGTGGATTACAGCGGAAT 60.807 52.381 0.00 0.00 0.00 3.01
787 800 0.459585 GCTCGTGGATTACAGCGGAA 60.460 55.000 0.00 0.00 0.00 4.30
788 801 1.141019 GCTCGTGGATTACAGCGGA 59.859 57.895 0.00 0.00 0.00 5.54
789 802 0.739462 TTGCTCGTGGATTACAGCGG 60.739 55.000 0.00 0.00 36.71 5.52
790 803 1.290203 ATTGCTCGTGGATTACAGCG 58.710 50.000 0.00 0.00 36.71 5.18
791 804 3.487544 GGAAATTGCTCGTGGATTACAGC 60.488 47.826 0.00 0.00 35.42 4.40
792 805 3.941483 AGGAAATTGCTCGTGGATTACAG 59.059 43.478 0.00 0.00 0.00 2.74
793 806 3.950397 AGGAAATTGCTCGTGGATTACA 58.050 40.909 0.00 0.00 0.00 2.41
879 893 4.398044 AGCAAAAACGAAACAGAAGAAGGA 59.602 37.500 0.00 0.00 0.00 3.36
907 921 2.231235 CTGTGAGTACAAAAATGGGGCC 59.769 50.000 0.00 0.00 36.14 5.80
937 955 3.432378 ACTCTTCCCTCTACACGAACAT 58.568 45.455 0.00 0.00 0.00 2.71
961 985 2.985116 GCCAACTCCTCCCTTCCCC 61.985 68.421 0.00 0.00 0.00 4.81
964 988 2.436824 GCGCCAACTCCTCCCTTC 60.437 66.667 0.00 0.00 0.00 3.46
1377 1401 2.434185 TGCAGGAATCGCGTGTCC 60.434 61.111 19.07 19.07 34.91 4.02
1573 1597 2.414559 GCACAAAATCAGGACGGACATG 60.415 50.000 0.00 0.00 0.00 3.21
1595 1619 0.249868 CTTGAGGACCGTGACAAGCA 60.250 55.000 9.47 0.00 34.46 3.91
1597 1621 0.951040 GCCTTGAGGACCGTGACAAG 60.951 60.000 0.06 13.05 39.24 3.16
1605 1629 0.462047 CCATGTACGCCTTGAGGACC 60.462 60.000 0.06 0.00 37.39 4.46
1683 1707 6.128309 TGGTCACAACATCTTGTTCATAATCG 60.128 38.462 0.00 0.00 38.77 3.34
1687 1711 4.450757 CGTGGTCACAACATCTTGTTCATA 59.549 41.667 1.90 0.00 38.77 2.15
1710 1734 1.727467 GGCATACATGGCCGTCAAC 59.273 57.895 0.00 0.00 46.49 3.18
1711 1735 4.234019 GGCATACATGGCCGTCAA 57.766 55.556 0.00 0.00 46.49 3.18
1752 1776 1.216710 CCTGTCGAAGAGTGCCCTC 59.783 63.158 0.00 0.00 36.95 4.30
1782 1806 1.670811 CACAGGATCACATTTACCCGC 59.329 52.381 0.00 0.00 0.00 6.13
1843 1867 2.146073 AACAAATGCACTGCCTCGCC 62.146 55.000 0.00 0.00 0.00 5.54
2094 2118 0.250038 CTACCACATCCCGCTCATGG 60.250 60.000 0.00 0.00 36.46 3.66
2157 2181 2.110967 CAGACCAATGGCCTCAGCG 61.111 63.158 3.32 0.00 41.24 5.18
2172 2196 3.777106 AGCTTCATGTCCTCAAACAGA 57.223 42.857 0.00 0.00 31.50 3.41
2193 2217 0.893270 CATTCGGTTTCACCCCTGCA 60.893 55.000 0.00 0.00 33.75 4.41
2646 2670 1.554617 TGCATCTTTCCATCGACCTCA 59.445 47.619 0.00 0.00 0.00 3.86
2905 2929 1.511850 TTTGATGGTCACAGTGCTCG 58.488 50.000 0.00 0.00 0.00 5.03
2948 2972 0.935898 CTGAATGCAGCGGATCTCAC 59.064 55.000 0.00 0.00 34.95 3.51
2949 2973 3.374506 CTGAATGCAGCGGATCTCA 57.625 52.632 0.00 0.00 34.95 3.27
2969 2993 5.612725 AAATCATCAACCCTGTTTTGTGT 57.387 34.783 0.00 0.00 0.00 3.72
3049 3075 2.124570 CCCTTCGCATCCACCCTG 60.125 66.667 0.00 0.00 0.00 4.45
3389 3415 6.201044 CAGTGTCTGAATGTCTAAAACGTCTT 59.799 38.462 0.00 0.00 32.44 3.01
3464 3490 8.554490 AGTGTTTATACAATCATACTCCCTCT 57.446 34.615 0.00 0.00 35.69 3.69
3619 3645 9.961265 TCCATACACTATATCTACGACTTTTTG 57.039 33.333 0.00 0.00 0.00 2.44
3637 3663 9.915629 CTCCTTCATAATAAGTACTCCATACAC 57.084 37.037 0.00 0.00 36.09 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.