Multiple sequence alignment - TraesCS5D01G259000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G259000 chr5D 100.000 3200 0 0 1 3200 365320071 365323270 0.000000e+00 5910
1 TraesCS5D01G259000 chr5B 89.357 1851 122 25 242 2046 431794290 431796111 0.000000e+00 2257
2 TraesCS5D01G259000 chr5B 86.820 1214 75 37 2042 3200 431796149 431797332 0.000000e+00 1277
3 TraesCS5D01G259000 chr5A 88.706 1824 125 41 272 2046 466981754 466983545 0.000000e+00 2152
4 TraesCS5D01G259000 chr5A 88.756 1174 84 22 2042 3200 466983583 466984723 0.000000e+00 1393
5 TraesCS5D01G259000 chr1D 91.579 95 7 1 137 230 121773744 121773650 2.590000e-26 130
6 TraesCS5D01G259000 chr1D 87.097 93 10 2 139 231 47324566 47324656 1.570000e-18 104
7 TraesCS5D01G259000 chr4A 89.474 95 4 4 142 230 498697469 498697563 7.250000e-22 115
8 TraesCS5D01G259000 chr4A 90.110 91 4 3 145 230 498697564 498697474 2.610000e-21 113
9 TraesCS5D01G259000 chr6A 87.129 101 10 2 133 230 77986119 77986019 9.380000e-21 111
10 TraesCS5D01G259000 chr6A 90.476 84 7 1 148 230 78016788 78016705 3.370000e-20 110
11 TraesCS5D01G259000 chr1A 89.535 86 7 2 145 228 335019658 335019573 1.210000e-19 108
12 TraesCS5D01G259000 chr7A 88.764 89 6 2 146 230 534405477 534405565 4.370000e-19 106
13 TraesCS5D01G259000 chr2A 89.535 86 4 2 146 231 747601918 747601838 1.570000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G259000 chr5D 365320071 365323270 3199 False 5910.0 5910 100.0000 1 3200 1 chr5D.!!$F1 3199
1 TraesCS5D01G259000 chr5B 431794290 431797332 3042 False 1767.0 2257 88.0885 242 3200 2 chr5B.!!$F1 2958
2 TraesCS5D01G259000 chr5A 466981754 466984723 2969 False 1772.5 2152 88.7310 272 3200 2 chr5A.!!$F1 2928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.036388 CTCCGCCAGGCTGAAACTAA 60.036 55.0 17.94 0.0 37.47 2.24 F
255 256 0.036388 TCCGCCAGGCTGAAACTAAG 60.036 55.0 17.94 0.0 37.47 2.18 F
480 487 0.179134 ATCCGAAGACACGCTACTGC 60.179 55.0 0.00 0.0 0.00 4.40 F
1967 2038 0.108898 TTATTTGCACGGCACATGGC 60.109 50.0 0.00 0.0 38.71 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1186 1245 0.319555 TTCACGACCGAGAAGCAAGG 60.320 55.0 0.0 0.0 0.00 3.61 R
1623 1685 0.390472 GAGGAGCACTGGCACTGTAC 60.390 60.0 0.0 0.0 44.61 2.90 R
2018 2089 0.391661 ATGAAAGCGCGACCATCAGT 60.392 50.0 12.1 0.0 0.00 3.41 R
3018 3195 0.249120 TCCAAGCCCATCACGTACTG 59.751 55.0 0.0 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.948853 AGTGTTTGTATGTATTTGATGTTTCG 57.051 30.769 0.00 0.00 0.00 3.46
30 31 8.779303 AGTGTTTGTATGTATTTGATGTTTCGA 58.221 29.630 0.00 0.00 0.00 3.71
31 32 9.388346 GTGTTTGTATGTATTTGATGTTTCGAA 57.612 29.630 0.00 0.00 0.00 3.71
32 33 9.952188 TGTTTGTATGTATTTGATGTTTCGAAA 57.048 25.926 6.47 6.47 0.00 3.46
39 40 8.251750 TGTATTTGATGTTTCGAAAGTAGAGG 57.748 34.615 11.66 0.00 0.00 3.69
40 41 7.876068 TGTATTTGATGTTTCGAAAGTAGAGGT 59.124 33.333 11.66 0.00 0.00 3.85
41 42 7.745620 ATTTGATGTTTCGAAAGTAGAGGTT 57.254 32.000 11.66 0.00 0.00 3.50
42 43 6.539649 TTGATGTTTCGAAAGTAGAGGTTG 57.460 37.500 11.66 0.00 0.00 3.77
43 44 5.607477 TGATGTTTCGAAAGTAGAGGTTGT 58.393 37.500 11.66 0.00 0.00 3.32
44 45 5.465390 TGATGTTTCGAAAGTAGAGGTTGTG 59.535 40.000 11.66 0.00 0.00 3.33
45 46 4.124238 TGTTTCGAAAGTAGAGGTTGTGG 58.876 43.478 11.66 0.00 0.00 4.17
46 47 4.124970 GTTTCGAAAGTAGAGGTTGTGGT 58.875 43.478 11.66 0.00 0.00 4.16
47 48 4.411256 TTCGAAAGTAGAGGTTGTGGTT 57.589 40.909 0.00 0.00 0.00 3.67
48 49 5.534207 TTCGAAAGTAGAGGTTGTGGTTA 57.466 39.130 0.00 0.00 0.00 2.85
49 50 5.130292 TCGAAAGTAGAGGTTGTGGTTAG 57.870 43.478 0.00 0.00 0.00 2.34
50 51 4.021719 TCGAAAGTAGAGGTTGTGGTTAGG 60.022 45.833 0.00 0.00 0.00 2.69
51 52 3.697619 AAGTAGAGGTTGTGGTTAGGC 57.302 47.619 0.00 0.00 0.00 3.93
52 53 2.903926 AGTAGAGGTTGTGGTTAGGCT 58.096 47.619 0.00 0.00 0.00 4.58
53 54 2.832733 AGTAGAGGTTGTGGTTAGGCTC 59.167 50.000 0.00 0.00 0.00 4.70
54 55 1.729586 AGAGGTTGTGGTTAGGCTCA 58.270 50.000 0.00 0.00 0.00 4.26
55 56 2.269940 AGAGGTTGTGGTTAGGCTCAT 58.730 47.619 0.00 0.00 0.00 2.90
56 57 2.644798 AGAGGTTGTGGTTAGGCTCATT 59.355 45.455 0.00 0.00 0.00 2.57
57 58 3.074538 AGAGGTTGTGGTTAGGCTCATTT 59.925 43.478 0.00 0.00 0.00 2.32
58 59 4.288626 AGAGGTTGTGGTTAGGCTCATTTA 59.711 41.667 0.00 0.00 0.00 1.40
59 60 4.993028 AGGTTGTGGTTAGGCTCATTTAA 58.007 39.130 0.00 0.00 0.00 1.52
60 61 5.010282 AGGTTGTGGTTAGGCTCATTTAAG 58.990 41.667 0.00 0.00 0.00 1.85
61 62 4.157840 GGTTGTGGTTAGGCTCATTTAAGG 59.842 45.833 0.00 0.00 0.00 2.69
62 63 4.650972 TGTGGTTAGGCTCATTTAAGGT 57.349 40.909 0.00 0.00 0.00 3.50
63 64 4.993028 TGTGGTTAGGCTCATTTAAGGTT 58.007 39.130 0.00 0.00 0.00 3.50
64 65 5.007682 TGTGGTTAGGCTCATTTAAGGTTC 58.992 41.667 0.00 0.00 0.00 3.62
65 66 4.094442 GTGGTTAGGCTCATTTAAGGTTCG 59.906 45.833 0.00 0.00 0.00 3.95
66 67 3.626217 GGTTAGGCTCATTTAAGGTTCGG 59.374 47.826 0.00 0.00 0.00 4.30
67 68 4.259356 GTTAGGCTCATTTAAGGTTCGGT 58.741 43.478 0.00 0.00 0.00 4.69
68 69 2.987232 AGGCTCATTTAAGGTTCGGTC 58.013 47.619 0.00 0.00 0.00 4.79
69 70 1.664151 GGCTCATTTAAGGTTCGGTCG 59.336 52.381 0.00 0.00 0.00 4.79
70 71 1.664151 GCTCATTTAAGGTTCGGTCGG 59.336 52.381 0.00 0.00 0.00 4.79
71 72 2.933928 GCTCATTTAAGGTTCGGTCGGT 60.934 50.000 0.00 0.00 0.00 4.69
72 73 2.928116 CTCATTTAAGGTTCGGTCGGTC 59.072 50.000 0.00 0.00 0.00 4.79
73 74 2.299582 TCATTTAAGGTTCGGTCGGTCA 59.700 45.455 0.00 0.00 0.00 4.02
74 75 2.153366 TTTAAGGTTCGGTCGGTCAC 57.847 50.000 0.00 0.00 0.00 3.67
75 76 1.331214 TTAAGGTTCGGTCGGTCACT 58.669 50.000 0.00 0.00 0.00 3.41
76 77 0.599558 TAAGGTTCGGTCGGTCACTG 59.400 55.000 0.00 0.00 0.00 3.66
77 78 1.397390 AAGGTTCGGTCGGTCACTGT 61.397 55.000 0.00 0.00 32.45 3.55
78 79 1.372623 GGTTCGGTCGGTCACTGTC 60.373 63.158 0.00 0.00 32.45 3.51
79 80 1.361271 GTTCGGTCGGTCACTGTCA 59.639 57.895 0.00 0.00 32.45 3.58
80 81 0.663568 GTTCGGTCGGTCACTGTCAG 60.664 60.000 0.00 0.00 32.45 3.51
81 82 1.105167 TTCGGTCGGTCACTGTCAGT 61.105 55.000 0.00 0.00 32.45 3.41
82 83 0.250424 TCGGTCGGTCACTGTCAGTA 60.250 55.000 4.85 0.00 32.45 2.74
83 84 0.168348 CGGTCGGTCACTGTCAGTAG 59.832 60.000 4.85 0.77 0.00 2.57
84 85 1.531423 GGTCGGTCACTGTCAGTAGA 58.469 55.000 4.85 3.25 0.00 2.59
85 86 1.199558 GGTCGGTCACTGTCAGTAGAC 59.800 57.143 19.23 19.23 45.19 2.59
96 97 3.784883 GTCAGTAGACGCGACGTATAT 57.215 47.619 15.93 0.00 41.37 0.86
97 98 4.125912 GTCAGTAGACGCGACGTATATT 57.874 45.455 15.93 3.86 41.37 1.28
98 99 3.898946 GTCAGTAGACGCGACGTATATTG 59.101 47.826 15.93 16.90 40.65 1.90
99 100 3.059393 TCAGTAGACGCGACGTATATTGG 60.059 47.826 15.93 10.41 40.06 3.16
100 101 2.225019 AGTAGACGCGACGTATATTGGG 59.775 50.000 15.93 0.00 41.37 4.12
101 102 0.318445 AGACGCGACGTATATTGGGC 60.318 55.000 15.93 0.00 41.37 5.36
102 103 1.280206 GACGCGACGTATATTGGGCC 61.280 60.000 15.93 0.00 41.37 5.80
103 104 2.369629 CGCGACGTATATTGGGCCG 61.370 63.158 0.00 0.00 0.00 6.13
104 105 2.025418 GCGACGTATATTGGGCCGG 61.025 63.158 0.00 0.00 0.00 6.13
105 106 2.025418 CGACGTATATTGGGCCGGC 61.025 63.158 21.18 21.18 0.00 6.13
106 107 1.070105 GACGTATATTGGGCCGGCA 59.930 57.895 30.85 8.42 0.00 5.69
107 108 0.321298 GACGTATATTGGGCCGGCAT 60.321 55.000 30.85 16.27 0.00 4.40
108 109 0.321298 ACGTATATTGGGCCGGCATC 60.321 55.000 30.85 20.21 0.00 3.91
109 110 1.358725 CGTATATTGGGCCGGCATCG 61.359 60.000 30.85 15.36 0.00 3.84
110 111 0.036765 GTATATTGGGCCGGCATCGA 60.037 55.000 30.85 19.64 39.00 3.59
111 112 0.687920 TATATTGGGCCGGCATCGAA 59.312 50.000 30.85 15.75 39.00 3.71
112 113 0.038166 ATATTGGGCCGGCATCGAAT 59.962 50.000 30.85 21.47 39.00 3.34
113 114 0.179004 TATTGGGCCGGCATCGAATT 60.179 50.000 30.85 8.21 39.00 2.17
114 115 0.179004 ATTGGGCCGGCATCGAATTA 60.179 50.000 30.85 4.15 39.00 1.40
115 116 0.817634 TTGGGCCGGCATCGAATTAG 60.818 55.000 30.85 0.00 39.00 1.73
116 117 1.966451 GGGCCGGCATCGAATTAGG 60.966 63.158 30.85 0.00 39.00 2.69
117 118 2.617274 GGCCGGCATCGAATTAGGC 61.617 63.158 30.85 14.43 43.47 3.93
118 119 1.891919 GCCGGCATCGAATTAGGCA 60.892 57.895 24.80 0.00 43.65 4.75
119 120 1.444119 GCCGGCATCGAATTAGGCAA 61.444 55.000 24.80 0.00 43.65 4.52
120 121 0.307760 CCGGCATCGAATTAGGCAAC 59.692 55.000 0.00 0.00 39.00 4.17
121 122 1.299541 CGGCATCGAATTAGGCAACT 58.700 50.000 0.00 0.00 45.60 3.16
122 123 1.261619 CGGCATCGAATTAGGCAACTC 59.738 52.381 0.00 0.00 43.23 3.01
123 124 3.060325 CGGCATCGAATTAGGCAACTCT 61.060 50.000 0.00 0.00 43.23 3.24
124 125 5.127274 CGGCATCGAATTAGGCAACTCTG 62.127 52.174 0.00 0.00 43.23 3.35
134 135 1.927895 GGCAACTCTGGTCGTAGATG 58.072 55.000 0.00 0.00 40.67 2.90
135 136 1.281899 GCAACTCTGGTCGTAGATGC 58.718 55.000 0.00 0.00 40.67 3.91
136 137 1.134965 GCAACTCTGGTCGTAGATGCT 60.135 52.381 0.00 0.00 40.67 3.79
137 138 2.803451 CAACTCTGGTCGTAGATGCTC 58.197 52.381 0.00 0.00 40.67 4.26
138 139 2.425312 CAACTCTGGTCGTAGATGCTCT 59.575 50.000 0.00 0.00 40.67 4.09
139 140 3.562343 ACTCTGGTCGTAGATGCTCTA 57.438 47.619 0.00 0.00 40.67 2.43
140 141 3.887352 ACTCTGGTCGTAGATGCTCTAA 58.113 45.455 0.00 0.00 40.67 2.10
141 142 3.628487 ACTCTGGTCGTAGATGCTCTAAC 59.372 47.826 0.00 0.00 40.67 2.34
142 143 3.880490 CTCTGGTCGTAGATGCTCTAACT 59.120 47.826 0.00 0.00 40.67 2.24
143 144 4.270834 TCTGGTCGTAGATGCTCTAACTT 58.729 43.478 0.00 0.00 40.67 2.66
144 145 4.096532 TCTGGTCGTAGATGCTCTAACTTG 59.903 45.833 0.00 0.00 40.67 3.16
145 146 3.762288 TGGTCGTAGATGCTCTAACTTGT 59.238 43.478 0.00 0.00 40.67 3.16
146 147 4.945543 TGGTCGTAGATGCTCTAACTTGTA 59.054 41.667 0.00 0.00 40.67 2.41
147 148 5.163683 TGGTCGTAGATGCTCTAACTTGTAC 60.164 44.000 0.00 0.00 40.67 2.90
148 149 5.066246 GGTCGTAGATGCTCTAACTTGTACT 59.934 44.000 0.00 0.00 40.67 2.73
149 150 6.193761 GTCGTAGATGCTCTAACTTGTACTC 58.806 44.000 0.00 0.00 40.67 2.59
150 151 5.296283 TCGTAGATGCTCTAACTTGTACTCC 59.704 44.000 0.00 0.00 29.58 3.85
151 152 5.505985 CGTAGATGCTCTAACTTGTACTCCC 60.506 48.000 0.00 0.00 29.58 4.30
152 153 4.615513 AGATGCTCTAACTTGTACTCCCT 58.384 43.478 0.00 0.00 0.00 4.20
153 154 4.647399 AGATGCTCTAACTTGTACTCCCTC 59.353 45.833 0.00 0.00 0.00 4.30
154 155 3.097614 TGCTCTAACTTGTACTCCCTCC 58.902 50.000 0.00 0.00 0.00 4.30
155 156 2.099427 GCTCTAACTTGTACTCCCTCCG 59.901 54.545 0.00 0.00 0.00 4.63
156 157 3.354467 CTCTAACTTGTACTCCCTCCGT 58.646 50.000 0.00 0.00 0.00 4.69
157 158 3.350833 TCTAACTTGTACTCCCTCCGTC 58.649 50.000 0.00 0.00 0.00 4.79
158 159 1.264295 AACTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
159 160 0.964358 ACTTGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
160 161 0.679002 CTTGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
161 162 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
162 163 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
163 164 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
164 165 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
185 186 7.839680 AAAAACTTGTCCCTCAAATAGATGT 57.160 32.000 0.00 0.00 35.48 3.06
186 187 8.934023 AAAAACTTGTCCCTCAAATAGATGTA 57.066 30.769 0.00 0.00 35.48 2.29
187 188 9.533831 AAAAACTTGTCCCTCAAATAGATGTAT 57.466 29.630 0.00 0.00 35.48 2.29
188 189 8.738645 AAACTTGTCCCTCAAATAGATGTATC 57.261 34.615 0.00 0.00 35.48 2.24
189 190 7.682787 ACTTGTCCCTCAAATAGATGTATCT 57.317 36.000 0.00 0.00 36.97 1.98
190 191 8.783660 ACTTGTCCCTCAAATAGATGTATCTA 57.216 34.615 4.22 4.22 36.64 1.98
191 192 8.865090 ACTTGTCCCTCAAATAGATGTATCTAG 58.135 37.037 7.57 0.00 36.19 2.43
192 193 7.233389 TGTCCCTCAAATAGATGTATCTAGC 57.767 40.000 7.57 0.00 42.20 3.42
193 194 6.782494 TGTCCCTCAAATAGATGTATCTAGCA 59.218 38.462 7.57 0.00 42.20 3.49
194 195 7.093992 GTCCCTCAAATAGATGTATCTAGCAC 58.906 42.308 7.57 0.00 42.20 4.40
195 196 6.782494 TCCCTCAAATAGATGTATCTAGCACA 59.218 38.462 7.57 0.22 42.20 4.57
196 197 7.290014 TCCCTCAAATAGATGTATCTAGCACAA 59.710 37.037 7.57 0.00 42.20 3.33
197 198 7.933577 CCCTCAAATAGATGTATCTAGCACAAA 59.066 37.037 7.57 0.00 42.20 2.83
198 199 9.499479 CCTCAAATAGATGTATCTAGCACAAAT 57.501 33.333 7.57 0.00 42.20 2.32
202 203 9.499479 AAATAGATGTATCTAGCACAAATGAGG 57.501 33.333 7.57 0.00 42.20 3.86
203 204 5.862845 AGATGTATCTAGCACAAATGAGGG 58.137 41.667 1.72 0.00 34.85 4.30
204 205 5.604231 AGATGTATCTAGCACAAATGAGGGA 59.396 40.000 1.72 0.00 34.85 4.20
205 206 5.023533 TGTATCTAGCACAAATGAGGGAC 57.976 43.478 0.00 0.00 0.00 4.46
206 207 4.469586 TGTATCTAGCACAAATGAGGGACA 59.530 41.667 0.00 0.00 0.00 4.02
207 208 4.574674 ATCTAGCACAAATGAGGGACAA 57.425 40.909 0.00 0.00 0.00 3.18
208 209 3.942829 TCTAGCACAAATGAGGGACAAG 58.057 45.455 0.00 0.00 0.00 3.16
209 210 1.251251 AGCACAAATGAGGGACAAGC 58.749 50.000 0.00 0.00 0.00 4.01
210 211 1.202976 AGCACAAATGAGGGACAAGCT 60.203 47.619 0.00 0.00 0.00 3.74
211 212 1.615392 GCACAAATGAGGGACAAGCTT 59.385 47.619 0.00 0.00 0.00 3.74
212 213 2.036346 GCACAAATGAGGGACAAGCTTT 59.964 45.455 0.00 0.00 0.00 3.51
213 214 3.493176 GCACAAATGAGGGACAAGCTTTT 60.493 43.478 0.00 0.00 0.00 2.27
214 215 4.696455 CACAAATGAGGGACAAGCTTTTT 58.304 39.130 0.00 0.00 0.00 1.94
215 216 4.746611 CACAAATGAGGGACAAGCTTTTTC 59.253 41.667 0.00 0.00 0.00 2.29
216 217 3.923017 AATGAGGGACAAGCTTTTTCG 57.077 42.857 0.00 0.00 0.00 3.46
217 218 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
218 219 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
219 220 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
220 221 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
221 222 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
222 223 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
223 224 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
224 225 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
225 226 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
226 227 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
227 228 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
228 229 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
229 230 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
230 231 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
231 232 2.734755 TTTCGGACGGAGGGAGTATA 57.265 50.000 0.00 0.00 0.00 1.47
232 233 2.965671 TTCGGACGGAGGGAGTATAT 57.034 50.000 0.00 0.00 0.00 0.86
233 234 2.965671 TCGGACGGAGGGAGTATATT 57.034 50.000 0.00 0.00 0.00 1.28
234 235 2.511659 TCGGACGGAGGGAGTATATTG 58.488 52.381 0.00 0.00 0.00 1.90
235 236 1.067776 CGGACGGAGGGAGTATATTGC 60.068 57.143 0.00 0.00 0.00 3.56
236 237 2.249139 GGACGGAGGGAGTATATTGCT 58.751 52.381 0.00 0.00 0.00 3.91
237 238 2.231721 GGACGGAGGGAGTATATTGCTC 59.768 54.545 0.00 0.00 0.00 4.26
254 255 0.036388 CTCCGCCAGGCTGAAACTAA 60.036 55.000 17.94 0.00 37.47 2.24
255 256 0.036388 TCCGCCAGGCTGAAACTAAG 60.036 55.000 17.94 0.00 37.47 2.18
270 273 7.867909 GCTGAAACTAAGCCAACTAAAAGAAAT 59.132 33.333 0.00 0.00 34.45 2.17
282 285 7.327032 CCAACTAAAAGAAATGCTGAAACTAGC 59.673 37.037 0.00 0.00 43.95 3.42
302 305 0.785979 GAATGCGAACGTACGTTGGT 59.214 50.000 36.11 19.72 38.60 3.67
309 312 1.456923 GAACGTACGTTGGTTGCCTAC 59.543 52.381 36.11 15.63 38.60 3.18
311 314 1.065358 CGTACGTTGGTTGCCTACTG 58.935 55.000 7.22 0.00 0.00 2.74
313 316 1.050204 TACGTTGGTTGCCTACTGGT 58.950 50.000 0.00 0.00 35.27 4.00
316 319 1.450025 GTTGGTTGCCTACTGGTAGC 58.550 55.000 2.50 0.00 35.27 3.58
317 320 1.060729 TTGGTTGCCTACTGGTAGCA 58.939 50.000 0.00 0.00 31.28 3.49
318 321 1.060729 TGGTTGCCTACTGGTAGCAA 58.939 50.000 0.00 7.57 31.28 3.91
362 365 0.752009 AATCCGAGACCGCAGCTAGA 60.752 55.000 0.00 0.00 0.00 2.43
372 375 0.597568 CGCAGCTAGAGATCTCCCTG 59.402 60.000 19.30 20.99 0.00 4.45
389 392 1.210545 CTGCAAGCACCAAAACAGCG 61.211 55.000 0.00 0.00 0.00 5.18
467 474 0.460284 GCAAGCTCCTTCGATCCGAA 60.460 55.000 1.78 1.78 43.75 4.30
474 481 4.470876 TTCGATCCGAAGACACGC 57.529 55.556 0.00 0.00 41.05 5.34
475 482 1.880894 TTCGATCCGAAGACACGCT 59.119 52.632 0.00 0.00 41.05 5.07
476 483 1.089112 TTCGATCCGAAGACACGCTA 58.911 50.000 0.00 0.00 41.05 4.26
477 484 0.376152 TCGATCCGAAGACACGCTAC 59.624 55.000 0.00 0.00 31.06 3.58
478 485 0.377554 CGATCCGAAGACACGCTACT 59.622 55.000 0.00 0.00 0.00 2.57
479 486 1.828832 GATCCGAAGACACGCTACTG 58.171 55.000 0.00 0.00 0.00 2.74
480 487 0.179134 ATCCGAAGACACGCTACTGC 60.179 55.000 0.00 0.00 0.00 4.40
481 488 1.080772 CCGAAGACACGCTACTGCA 60.081 57.895 0.00 0.00 39.64 4.41
482 489 1.073216 CCGAAGACACGCTACTGCAG 61.073 60.000 13.48 13.48 39.64 4.41
484 491 1.623359 GAAGACACGCTACTGCAGAG 58.377 55.000 23.35 14.33 39.64 3.35
489 499 1.613925 ACACGCTACTGCAGAGAGAAA 59.386 47.619 23.35 0.00 39.64 2.52
574 588 1.376683 CCTTCCAATTCCGTCCGCA 60.377 57.895 0.00 0.00 0.00 5.69
621 640 2.762875 CGTACCCCTCCCCTGTCC 60.763 72.222 0.00 0.00 0.00 4.02
858 898 2.898738 CGGTGGAGCTGAGCTGAT 59.101 61.111 13.71 0.00 39.88 2.90
860 900 1.903294 GGTGGAGCTGAGCTGATCA 59.097 57.895 13.71 4.52 39.88 2.92
1085 1130 2.858745 AGCAAACAACAAGGTCGGTAT 58.141 42.857 0.00 0.00 0.00 2.73
1157 1216 1.595109 CGCTGTCAGTGGCAGTGAA 60.595 57.895 30.01 14.86 44.57 3.18
1186 1245 0.744874 TGGCGGAGTAGTGCTGATAC 59.255 55.000 0.00 0.00 0.00 2.24
1198 1257 1.134699 TGCTGATACCTTGCTTCTCGG 60.135 52.381 0.00 0.00 0.00 4.63
1214 1273 0.953471 TCGGTCGTGAAAATGCAGGG 60.953 55.000 0.00 0.00 0.00 4.45
1221 1280 1.203287 GTGAAAATGCAGGGGAGCTTC 59.797 52.381 0.00 0.00 34.99 3.86
1273 1332 4.459089 GGCACCTGAGAGGACGGC 62.459 72.222 0.00 0.00 37.67 5.68
1326 1385 4.414956 AGGGATGAGGCCGTGGGA 62.415 66.667 0.00 0.00 0.00 4.37
1410 1469 1.756408 TTGTCGGGTTAGGCGGTGAA 61.756 55.000 0.00 0.00 0.00 3.18
1411 1470 1.739196 GTCGGGTTAGGCGGTGAAC 60.739 63.158 0.00 0.00 0.00 3.18
1413 1472 2.344872 GGGTTAGGCGGTGAACGT 59.655 61.111 0.00 0.00 46.52 3.99
1550 1609 1.625511 AGGCAAAGGCTTCTTCTTGG 58.374 50.000 0.00 0.00 40.87 3.61
1570 1629 3.256383 TGGTTCTTGCCACTGATTGATTG 59.744 43.478 0.00 0.00 32.81 2.67
1627 1689 8.795842 TTTTCACTCCTGAAGTAAAAAGTACA 57.204 30.769 0.00 0.00 37.70 2.90
1628 1690 8.433421 TTTCACTCCTGAAGTAAAAAGTACAG 57.567 34.615 0.00 0.00 37.70 2.74
1629 1691 7.120923 TCACTCCTGAAGTAAAAAGTACAGT 57.879 36.000 0.00 0.00 36.07 3.55
1631 1693 5.758784 ACTCCTGAAGTAAAAAGTACAGTGC 59.241 40.000 0.00 0.00 36.07 4.40
1659 1725 3.390135 TCCTCGTCAGTTAAACAAGCTG 58.610 45.455 0.00 0.00 0.00 4.24
1669 1735 6.600032 TCAGTTAAACAAGCTGGTGTTCTTTA 59.400 34.615 4.30 0.00 40.86 1.85
1675 1741 4.096382 ACAAGCTGGTGTTCTTTACTTGTG 59.904 41.667 0.00 0.00 43.22 3.33
1680 1746 4.013728 TGGTGTTCTTTACTTGTGCTGTT 58.986 39.130 0.00 0.00 0.00 3.16
1681 1747 5.186942 TGGTGTTCTTTACTTGTGCTGTTA 58.813 37.500 0.00 0.00 0.00 2.41
1699 1765 7.536622 GTGCTGTTAAGATTCTTGTCAAATCTG 59.463 37.037 9.22 0.00 41.47 2.90
1704 1770 4.660168 AGATTCTTGTCAAATCTGCCACT 58.340 39.130 0.00 0.00 40.94 4.00
1708 1774 2.189594 TGTCAAATCTGCCACTCCAG 57.810 50.000 0.00 0.00 0.00 3.86
1749 1815 4.718940 AATTAGTGTACTGCAAATGGGC 57.281 40.909 0.00 0.00 0.00 5.36
1870 1940 2.163815 CAGGAGCAAATCAAGAAGCAGG 59.836 50.000 0.00 0.00 0.00 4.85
1876 1946 3.675228 GCAAATCAAGAAGCAGGTCATGG 60.675 47.826 0.00 0.00 0.00 3.66
1940 2011 4.277258 CACGCTTTACATGATTCAGCATC 58.723 43.478 0.00 0.00 0.00 3.91
1966 2037 2.195096 CATTATTTGCACGGCACATGG 58.805 47.619 0.00 0.00 38.71 3.66
1967 2038 0.108898 TTATTTGCACGGCACATGGC 60.109 50.000 0.00 0.00 38.71 4.40
1968 2039 0.964860 TATTTGCACGGCACATGGCT 60.965 50.000 3.76 0.00 44.01 4.75
1995 2066 1.339920 TGGCCACATCACAATCGACAT 60.340 47.619 0.00 0.00 0.00 3.06
2004 2075 5.062183 ACATCACAATCGACATACAACTTCG 59.938 40.000 0.00 0.00 0.00 3.79
2005 2076 4.800784 TCACAATCGACATACAACTTCGA 58.199 39.130 0.00 0.00 45.22 3.71
2011 2082 5.823209 TCGACATACAACTTCGATTCCTA 57.177 39.130 0.00 0.00 36.87 2.94
2018 2089 5.670792 ACAACTTCGATTCCTACCATGTA 57.329 39.130 0.00 0.00 0.00 2.29
2023 2094 5.598830 ACTTCGATTCCTACCATGTACTGAT 59.401 40.000 0.00 0.00 0.00 2.90
2031 2102 1.490693 CCATGTACTGATGGTCGCGC 61.491 60.000 0.00 0.00 38.53 6.86
2051 2164 2.353109 GCTTTCATTTCCAGGGAGCAAC 60.353 50.000 0.00 0.00 0.00 4.17
2065 2178 1.522806 GCAACCGGCCATCGTCATA 60.523 57.895 0.00 0.00 37.11 2.15
2187 2303 1.472276 CGTTGTATGAGCTCGCGGAC 61.472 60.000 6.13 4.79 0.00 4.79
2188 2304 1.226575 TTGTATGAGCTCGCGGACG 60.227 57.895 6.13 0.00 42.01 4.79
2218 2334 1.226974 CTAGATGCCGGTCCACACG 60.227 63.158 1.90 0.00 0.00 4.49
2240 2356 2.292016 CGTGAGAAGATGCGACTCCTAT 59.708 50.000 0.00 0.00 0.00 2.57
2241 2357 3.243234 CGTGAGAAGATGCGACTCCTATT 60.243 47.826 0.00 0.00 0.00 1.73
2250 2371 7.328277 AGATGCGACTCCTATTGATATAGAC 57.672 40.000 0.00 0.00 36.62 2.59
2257 2378 8.180920 CGACTCCTATTGATATAGACACAGATG 58.819 40.741 0.00 0.00 36.62 2.90
2293 2442 4.487714 AGCACATGGTTAGCTTAGCTAA 57.512 40.909 21.21 21.21 46.97 3.09
2358 2507 2.054363 CCTCGATCGATCAATGGAACG 58.946 52.381 24.40 9.18 40.28 3.95
2382 2531 1.405463 CGATCGAGGTGAGTTGGATGA 59.595 52.381 10.26 0.00 0.00 2.92
2418 2567 1.541310 CGTGCTTGGAGGGGTAGTGA 61.541 60.000 0.00 0.00 0.00 3.41
2441 2594 2.928757 GTCTGTAATCTGTCAGCAGCAG 59.071 50.000 0.00 1.69 42.29 4.24
2476 2629 5.177881 GCTGCAGAGAATAGAACTCATGATG 59.822 44.000 20.43 0.00 36.91 3.07
2477 2630 5.055144 TGCAGAGAATAGAACTCATGATGC 58.945 41.667 0.00 0.00 36.91 3.91
2495 2648 2.494059 TGCTACTTCAGGTTTCAGCAC 58.506 47.619 0.00 0.00 33.63 4.40
2605 2763 1.624487 CATCGCAGCTGTTACACGTA 58.376 50.000 16.64 0.99 0.00 3.57
2683 2841 3.067106 CAACGAAAAGAGGAAGCTAGCA 58.933 45.455 18.83 0.00 0.00 3.49
2753 2920 4.235762 GCTCTCGGCCGGCCAATA 62.236 66.667 42.78 26.82 35.37 1.90
2783 2950 4.941309 AACCGGACCACGCCAACC 62.941 66.667 9.46 0.00 42.52 3.77
2842 3012 2.552373 GGCCAATAATAGAGGAACGGGG 60.552 54.545 0.00 0.00 0.00 5.73
2941 3118 2.106511 ACACCTGTTGCTGTTATCCTGT 59.893 45.455 0.00 0.00 0.00 4.00
2942 3119 3.326588 ACACCTGTTGCTGTTATCCTGTA 59.673 43.478 0.00 0.00 0.00 2.74
2943 3120 4.019321 ACACCTGTTGCTGTTATCCTGTAT 60.019 41.667 0.00 0.00 0.00 2.29
3018 3195 3.425492 GCTCGCTTGAAGTTTTCTGATCC 60.425 47.826 0.00 0.00 0.00 3.36
3101 3281 0.034896 GGAAAGCGACCTCCACTGAA 59.965 55.000 0.00 0.00 0.00 3.02
3104 3284 0.605589 AAGCGACCTCCACTGAAGAG 59.394 55.000 0.00 0.00 0.00 2.85
3120 3300 0.963355 AGAGGACGGTCTCACTCTGC 60.963 60.000 12.66 0.00 38.76 4.26
3153 3333 2.642254 CGGCCACCTAACCTGACGA 61.642 63.158 2.24 0.00 0.00 4.20
3164 3344 4.021368 CCTAACCTGACGAGAAAAGAAGGA 60.021 45.833 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.393249 CGAAACATCAAATACATACAAACACTT 57.607 29.630 0.00 0.00 0.00 3.16
4 5 8.779303 TCGAAACATCAAATACATACAAACACT 58.221 29.630 0.00 0.00 0.00 3.55
5 6 8.942669 TCGAAACATCAAATACATACAAACAC 57.057 30.769 0.00 0.00 0.00 3.32
6 7 9.952188 TTTCGAAACATCAAATACATACAAACA 57.048 25.926 6.47 0.00 0.00 2.83
13 14 8.883731 CCTCTACTTTCGAAACATCAAATACAT 58.116 33.333 6.47 0.00 0.00 2.29
14 15 7.876068 ACCTCTACTTTCGAAACATCAAATACA 59.124 33.333 6.47 0.00 0.00 2.29
15 16 8.252964 ACCTCTACTTTCGAAACATCAAATAC 57.747 34.615 6.47 0.00 0.00 1.89
16 17 8.717821 CAACCTCTACTTTCGAAACATCAAATA 58.282 33.333 6.47 0.00 0.00 1.40
17 18 7.228706 ACAACCTCTACTTTCGAAACATCAAAT 59.771 33.333 6.47 0.00 0.00 2.32
18 19 6.540914 ACAACCTCTACTTTCGAAACATCAAA 59.459 34.615 6.47 0.00 0.00 2.69
19 20 6.018262 CACAACCTCTACTTTCGAAACATCAA 60.018 38.462 6.47 0.00 0.00 2.57
20 21 5.465390 CACAACCTCTACTTTCGAAACATCA 59.535 40.000 6.47 0.00 0.00 3.07
21 22 5.107065 CCACAACCTCTACTTTCGAAACATC 60.107 44.000 6.47 0.00 0.00 3.06
22 23 4.755123 CCACAACCTCTACTTTCGAAACAT 59.245 41.667 6.47 0.65 0.00 2.71
23 24 4.124238 CCACAACCTCTACTTTCGAAACA 58.876 43.478 6.47 0.00 0.00 2.83
24 25 4.124970 ACCACAACCTCTACTTTCGAAAC 58.875 43.478 6.47 0.00 0.00 2.78
25 26 4.411256 ACCACAACCTCTACTTTCGAAA 57.589 40.909 10.71 10.71 0.00 3.46
26 27 4.411256 AACCACAACCTCTACTTTCGAA 57.589 40.909 0.00 0.00 0.00 3.71
27 28 4.021719 CCTAACCACAACCTCTACTTTCGA 60.022 45.833 0.00 0.00 0.00 3.71
28 29 4.243270 CCTAACCACAACCTCTACTTTCG 58.757 47.826 0.00 0.00 0.00 3.46
29 30 4.001652 GCCTAACCACAACCTCTACTTTC 58.998 47.826 0.00 0.00 0.00 2.62
30 31 3.651423 AGCCTAACCACAACCTCTACTTT 59.349 43.478 0.00 0.00 0.00 2.66
31 32 3.248888 AGCCTAACCACAACCTCTACTT 58.751 45.455 0.00 0.00 0.00 2.24
32 33 2.832733 GAGCCTAACCACAACCTCTACT 59.167 50.000 0.00 0.00 0.00 2.57
33 34 2.565834 TGAGCCTAACCACAACCTCTAC 59.434 50.000 0.00 0.00 0.00 2.59
34 35 2.897350 TGAGCCTAACCACAACCTCTA 58.103 47.619 0.00 0.00 0.00 2.43
35 36 1.729586 TGAGCCTAACCACAACCTCT 58.270 50.000 0.00 0.00 0.00 3.69
36 37 2.789409 ATGAGCCTAACCACAACCTC 57.211 50.000 0.00 0.00 0.00 3.85
37 38 3.525800 AAATGAGCCTAACCACAACCT 57.474 42.857 0.00 0.00 0.00 3.50
38 39 4.157840 CCTTAAATGAGCCTAACCACAACC 59.842 45.833 0.00 0.00 0.00 3.77
39 40 4.765339 ACCTTAAATGAGCCTAACCACAAC 59.235 41.667 0.00 0.00 0.00 3.32
40 41 4.993028 ACCTTAAATGAGCCTAACCACAA 58.007 39.130 0.00 0.00 0.00 3.33
41 42 4.650972 ACCTTAAATGAGCCTAACCACA 57.349 40.909 0.00 0.00 0.00 4.17
42 43 4.094442 CGAACCTTAAATGAGCCTAACCAC 59.906 45.833 0.00 0.00 0.00 4.16
43 44 4.258543 CGAACCTTAAATGAGCCTAACCA 58.741 43.478 0.00 0.00 0.00 3.67
44 45 3.626217 CCGAACCTTAAATGAGCCTAACC 59.374 47.826 0.00 0.00 0.00 2.85
45 46 4.259356 ACCGAACCTTAAATGAGCCTAAC 58.741 43.478 0.00 0.00 0.00 2.34
46 47 4.510571 GACCGAACCTTAAATGAGCCTAA 58.489 43.478 0.00 0.00 0.00 2.69
47 48 3.429822 CGACCGAACCTTAAATGAGCCTA 60.430 47.826 0.00 0.00 0.00 3.93
48 49 2.677037 CGACCGAACCTTAAATGAGCCT 60.677 50.000 0.00 0.00 0.00 4.58
49 50 1.664151 CGACCGAACCTTAAATGAGCC 59.336 52.381 0.00 0.00 0.00 4.70
50 51 1.664151 CCGACCGAACCTTAAATGAGC 59.336 52.381 0.00 0.00 0.00 4.26
51 52 2.928116 GACCGACCGAACCTTAAATGAG 59.072 50.000 0.00 0.00 0.00 2.90
52 53 2.299582 TGACCGACCGAACCTTAAATGA 59.700 45.455 0.00 0.00 0.00 2.57
53 54 2.414138 GTGACCGACCGAACCTTAAATG 59.586 50.000 0.00 0.00 0.00 2.32
54 55 2.301009 AGTGACCGACCGAACCTTAAAT 59.699 45.455 0.00 0.00 0.00 1.40
55 56 1.688197 AGTGACCGACCGAACCTTAAA 59.312 47.619 0.00 0.00 0.00 1.52
56 57 1.000060 CAGTGACCGACCGAACCTTAA 60.000 52.381 0.00 0.00 0.00 1.85
57 58 0.599558 CAGTGACCGACCGAACCTTA 59.400 55.000 0.00 0.00 0.00 2.69
58 59 1.366366 CAGTGACCGACCGAACCTT 59.634 57.895 0.00 0.00 0.00 3.50
59 60 1.803366 GACAGTGACCGACCGAACCT 61.803 60.000 0.00 0.00 0.00 3.50
60 61 1.372623 GACAGTGACCGACCGAACC 60.373 63.158 0.00 0.00 0.00 3.62
61 62 0.663568 CTGACAGTGACCGACCGAAC 60.664 60.000 0.00 0.00 0.00 3.95
62 63 1.105167 ACTGACAGTGACCGACCGAA 61.105 55.000 7.47 0.00 0.00 4.30
63 64 0.250424 TACTGACAGTGACCGACCGA 60.250 55.000 18.58 0.00 0.00 4.69
64 65 0.168348 CTACTGACAGTGACCGACCG 59.832 60.000 18.58 0.00 0.00 4.79
65 66 1.199558 GTCTACTGACAGTGACCGACC 59.800 57.143 18.58 0.00 42.48 4.79
66 67 1.136029 CGTCTACTGACAGTGACCGAC 60.136 57.143 18.58 15.82 43.06 4.79
67 68 1.154197 CGTCTACTGACAGTGACCGA 58.846 55.000 18.58 6.51 43.06 4.69
68 69 0.454620 GCGTCTACTGACAGTGACCG 60.455 60.000 18.58 16.13 43.06 4.79
69 70 0.454620 CGCGTCTACTGACAGTGACC 60.455 60.000 18.58 14.10 43.06 4.02
70 71 0.516001 TCGCGTCTACTGACAGTGAC 59.484 55.000 18.58 19.30 43.06 3.67
71 72 0.516001 GTCGCGTCTACTGACAGTGA 59.484 55.000 18.58 10.49 43.06 3.41
72 73 0.789753 CGTCGCGTCTACTGACAGTG 60.790 60.000 18.58 8.34 43.06 3.66
73 74 1.226686 ACGTCGCGTCTACTGACAGT 61.227 55.000 13.68 13.68 43.06 3.55
74 75 0.717784 TACGTCGCGTCTACTGACAG 59.282 55.000 5.77 0.00 43.06 3.51
75 76 1.362768 ATACGTCGCGTCTACTGACA 58.637 50.000 5.77 0.00 43.06 3.58
76 77 3.784883 ATATACGTCGCGTCTACTGAC 57.215 47.619 5.77 0.00 41.54 3.51
77 78 3.059393 CCAATATACGTCGCGTCTACTGA 60.059 47.826 5.77 0.00 41.54 3.41
78 79 3.223953 CCAATATACGTCGCGTCTACTG 58.776 50.000 5.77 4.26 41.54 2.74
79 80 2.225019 CCCAATATACGTCGCGTCTACT 59.775 50.000 5.77 0.00 41.54 2.57
80 81 2.578495 CCCAATATACGTCGCGTCTAC 58.422 52.381 5.77 0.00 41.54 2.59
81 82 1.069022 GCCCAATATACGTCGCGTCTA 60.069 52.381 5.77 4.41 41.54 2.59
82 83 0.318445 GCCCAATATACGTCGCGTCT 60.318 55.000 5.77 2.36 41.54 4.18
83 84 1.280206 GGCCCAATATACGTCGCGTC 61.280 60.000 5.77 0.00 41.54 5.19
84 85 1.300388 GGCCCAATATACGTCGCGT 60.300 57.895 5.77 9.64 44.35 6.01
85 86 2.369629 CGGCCCAATATACGTCGCG 61.370 63.158 0.00 0.00 0.00 5.87
86 87 2.025418 CCGGCCCAATATACGTCGC 61.025 63.158 0.00 0.00 0.00 5.19
87 88 2.025418 GCCGGCCCAATATACGTCG 61.025 63.158 18.11 0.00 0.00 5.12
88 89 0.321298 ATGCCGGCCCAATATACGTC 60.321 55.000 26.77 0.00 0.00 4.34
89 90 0.321298 GATGCCGGCCCAATATACGT 60.321 55.000 26.77 0.00 0.00 3.57
90 91 1.358725 CGATGCCGGCCCAATATACG 61.359 60.000 26.77 13.36 0.00 3.06
91 92 0.036765 TCGATGCCGGCCCAATATAC 60.037 55.000 26.77 5.16 36.24 1.47
92 93 0.687920 TTCGATGCCGGCCCAATATA 59.312 50.000 26.77 2.60 36.24 0.86
93 94 0.038166 ATTCGATGCCGGCCCAATAT 59.962 50.000 26.77 10.50 36.24 1.28
94 95 0.179004 AATTCGATGCCGGCCCAATA 60.179 50.000 26.77 4.49 36.24 1.90
95 96 0.179004 TAATTCGATGCCGGCCCAAT 60.179 50.000 26.77 11.41 36.24 3.16
96 97 0.817634 CTAATTCGATGCCGGCCCAA 60.818 55.000 26.77 11.53 36.24 4.12
97 98 1.227823 CTAATTCGATGCCGGCCCA 60.228 57.895 26.77 6.41 36.24 5.36
98 99 1.966451 CCTAATTCGATGCCGGCCC 60.966 63.158 26.77 15.22 36.24 5.80
99 100 2.617274 GCCTAATTCGATGCCGGCC 61.617 63.158 26.77 8.57 36.24 6.13
100 101 1.444119 TTGCCTAATTCGATGCCGGC 61.444 55.000 22.73 22.73 38.01 6.13
101 102 0.307760 GTTGCCTAATTCGATGCCGG 59.692 55.000 0.00 0.00 36.24 6.13
102 103 1.261619 GAGTTGCCTAATTCGATGCCG 59.738 52.381 0.00 0.00 37.07 5.69
103 104 2.289002 CAGAGTTGCCTAATTCGATGCC 59.711 50.000 0.00 0.00 0.00 4.40
104 105 2.289002 CCAGAGTTGCCTAATTCGATGC 59.711 50.000 0.00 0.00 0.00 3.91
105 106 3.535561 ACCAGAGTTGCCTAATTCGATG 58.464 45.455 0.00 0.00 0.00 3.84
106 107 3.738281 CGACCAGAGTTGCCTAATTCGAT 60.738 47.826 0.00 0.00 0.00 3.59
107 108 2.416836 CGACCAGAGTTGCCTAATTCGA 60.417 50.000 0.00 0.00 0.00 3.71
108 109 1.927174 CGACCAGAGTTGCCTAATTCG 59.073 52.381 0.00 0.00 0.00 3.34
109 110 2.973945 ACGACCAGAGTTGCCTAATTC 58.026 47.619 0.00 0.00 0.00 2.17
110 111 3.767673 TCTACGACCAGAGTTGCCTAATT 59.232 43.478 0.00 0.00 0.00 1.40
111 112 3.362706 TCTACGACCAGAGTTGCCTAAT 58.637 45.455 0.00 0.00 0.00 1.73
112 113 2.799017 TCTACGACCAGAGTTGCCTAA 58.201 47.619 0.00 0.00 0.00 2.69
113 114 2.502142 TCTACGACCAGAGTTGCCTA 57.498 50.000 0.00 0.00 0.00 3.93
114 115 1.478510 CATCTACGACCAGAGTTGCCT 59.521 52.381 0.00 0.00 0.00 4.75
115 116 1.927895 CATCTACGACCAGAGTTGCC 58.072 55.000 0.00 0.00 0.00 4.52
116 117 1.134965 AGCATCTACGACCAGAGTTGC 60.135 52.381 0.00 0.00 38.24 4.17
117 118 2.803451 GAGCATCTACGACCAGAGTTG 58.197 52.381 0.00 0.00 0.00 3.16
131 132 4.202172 GGAGGGAGTACAAGTTAGAGCATC 60.202 50.000 0.00 0.00 0.00 3.91
132 133 3.707102 GGAGGGAGTACAAGTTAGAGCAT 59.293 47.826 0.00 0.00 0.00 3.79
133 134 3.097614 GGAGGGAGTACAAGTTAGAGCA 58.902 50.000 0.00 0.00 0.00 4.26
134 135 2.099427 CGGAGGGAGTACAAGTTAGAGC 59.901 54.545 0.00 0.00 0.00 4.09
135 136 3.354467 ACGGAGGGAGTACAAGTTAGAG 58.646 50.000 0.00 0.00 0.00 2.43
136 137 3.350833 GACGGAGGGAGTACAAGTTAGA 58.649 50.000 0.00 0.00 0.00 2.10
137 138 2.426381 GGACGGAGGGAGTACAAGTTAG 59.574 54.545 0.00 0.00 0.00 2.34
138 139 2.450476 GGACGGAGGGAGTACAAGTTA 58.550 52.381 0.00 0.00 0.00 2.24
139 140 1.264295 GGACGGAGGGAGTACAAGTT 58.736 55.000 0.00 0.00 0.00 2.66
140 141 0.964358 CGGACGGAGGGAGTACAAGT 60.964 60.000 0.00 0.00 0.00 3.16
141 142 0.679002 TCGGACGGAGGGAGTACAAG 60.679 60.000 0.00 0.00 0.00 3.16
142 143 0.251297 TTCGGACGGAGGGAGTACAA 60.251 55.000 0.00 0.00 0.00 2.41
143 144 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
144 145 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
145 146 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
146 147 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
161 162 7.839680 ACATCTATTTGAGGGACAAGTTTTT 57.160 32.000 0.00 0.00 39.77 1.94
162 163 9.178758 GATACATCTATTTGAGGGACAAGTTTT 57.821 33.333 0.00 0.00 39.77 2.43
163 164 8.552296 AGATACATCTATTTGAGGGACAAGTTT 58.448 33.333 0.00 0.00 36.19 2.66
164 165 8.095452 AGATACATCTATTTGAGGGACAAGTT 57.905 34.615 0.00 0.00 36.19 2.66
165 166 7.682787 AGATACATCTATTTGAGGGACAAGT 57.317 36.000 0.00 0.00 36.19 3.16
166 167 7.816995 GCTAGATACATCTATTTGAGGGACAAG 59.183 40.741 0.00 0.00 38.60 3.16
167 168 7.290014 TGCTAGATACATCTATTTGAGGGACAA 59.710 37.037 0.00 0.00 38.60 3.18
168 169 6.782494 TGCTAGATACATCTATTTGAGGGACA 59.218 38.462 0.00 0.00 38.60 4.02
169 170 7.093992 GTGCTAGATACATCTATTTGAGGGAC 58.906 42.308 0.00 0.00 38.60 4.46
170 171 6.782494 TGTGCTAGATACATCTATTTGAGGGA 59.218 38.462 0.00 0.00 38.60 4.20
171 172 6.997655 TGTGCTAGATACATCTATTTGAGGG 58.002 40.000 0.00 0.00 38.60 4.30
172 173 8.893219 TTTGTGCTAGATACATCTATTTGAGG 57.107 34.615 0.00 0.00 38.60 3.86
176 177 9.499479 CCTCATTTGTGCTAGATACATCTATTT 57.501 33.333 0.00 0.00 38.60 1.40
177 178 8.099537 CCCTCATTTGTGCTAGATACATCTATT 58.900 37.037 0.00 0.00 38.60 1.73
178 179 7.455953 TCCCTCATTTGTGCTAGATACATCTAT 59.544 37.037 0.00 0.00 38.60 1.98
179 180 6.782494 TCCCTCATTTGTGCTAGATACATCTA 59.218 38.462 0.00 0.00 38.32 1.98
180 181 5.604231 TCCCTCATTTGTGCTAGATACATCT 59.396 40.000 0.00 0.00 40.86 2.90
181 182 5.698545 GTCCCTCATTTGTGCTAGATACATC 59.301 44.000 0.00 0.00 0.00 3.06
182 183 5.130975 TGTCCCTCATTTGTGCTAGATACAT 59.869 40.000 0.00 0.00 0.00 2.29
183 184 4.469586 TGTCCCTCATTTGTGCTAGATACA 59.530 41.667 0.00 0.00 0.00 2.29
184 185 5.023533 TGTCCCTCATTTGTGCTAGATAC 57.976 43.478 0.00 0.00 0.00 2.24
185 186 5.674525 CTTGTCCCTCATTTGTGCTAGATA 58.325 41.667 0.00 0.00 0.00 1.98
186 187 4.521146 CTTGTCCCTCATTTGTGCTAGAT 58.479 43.478 0.00 0.00 0.00 1.98
187 188 3.869912 GCTTGTCCCTCATTTGTGCTAGA 60.870 47.826 0.00 0.00 0.00 2.43
188 189 2.421424 GCTTGTCCCTCATTTGTGCTAG 59.579 50.000 0.00 0.00 0.00 3.42
189 190 2.040278 AGCTTGTCCCTCATTTGTGCTA 59.960 45.455 0.00 0.00 0.00 3.49
190 191 1.202976 AGCTTGTCCCTCATTTGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
191 192 1.251251 AGCTTGTCCCTCATTTGTGC 58.749 50.000 0.00 0.00 0.00 4.57
192 193 4.326504 AAAAGCTTGTCCCTCATTTGTG 57.673 40.909 0.00 0.00 0.00 3.33
193 194 4.499696 CGAAAAAGCTTGTCCCTCATTTGT 60.500 41.667 0.00 0.00 0.00 2.83
194 195 3.983344 CGAAAAAGCTTGTCCCTCATTTG 59.017 43.478 0.00 0.00 0.00 2.32
195 196 3.005791 CCGAAAAAGCTTGTCCCTCATTT 59.994 43.478 0.00 0.00 0.00 2.32
196 197 2.558359 CCGAAAAAGCTTGTCCCTCATT 59.442 45.455 0.00 0.00 0.00 2.57
197 198 2.162681 CCGAAAAAGCTTGTCCCTCAT 58.837 47.619 0.00 0.00 0.00 2.90
198 199 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
199 200 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
200 201 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
201 202 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
202 203 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
203 204 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
204 205 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
205 206 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
206 207 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
207 208 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
208 209 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
209 210 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
210 211 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
211 212 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
212 213 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
213 214 2.889045 CAATATACTCCCTCCGTCCGAA 59.111 50.000 0.00 0.00 0.00 4.30
214 215 2.511659 CAATATACTCCCTCCGTCCGA 58.488 52.381 0.00 0.00 0.00 4.55
215 216 1.067776 GCAATATACTCCCTCCGTCCG 60.068 57.143 0.00 0.00 0.00 4.79
216 217 2.231721 GAGCAATATACTCCCTCCGTCC 59.768 54.545 0.00 0.00 0.00 4.79
217 218 2.231721 GGAGCAATATACTCCCTCCGTC 59.768 54.545 11.96 0.00 46.81 4.79
218 219 2.249139 GGAGCAATATACTCCCTCCGT 58.751 52.381 11.96 0.00 46.81 4.69
235 236 0.036388 TTAGTTTCAGCCTGGCGGAG 60.036 55.000 20.40 11.51 33.94 4.63
236 237 0.036388 CTTAGTTTCAGCCTGGCGGA 60.036 55.000 17.72 17.72 0.00 5.54
237 238 1.648467 GCTTAGTTTCAGCCTGGCGG 61.648 60.000 13.96 13.43 0.00 6.13
238 239 1.796796 GCTTAGTTTCAGCCTGGCG 59.203 57.895 13.96 8.60 0.00 5.69
254 255 5.789643 TTCAGCATTTCTTTTAGTTGGCT 57.210 34.783 0.00 0.00 0.00 4.75
255 256 5.985530 AGTTTCAGCATTTCTTTTAGTTGGC 59.014 36.000 0.00 0.00 0.00 4.52
257 258 7.059945 CGCTAGTTTCAGCATTTCTTTTAGTTG 59.940 37.037 0.00 0.00 41.88 3.16
258 259 7.041372 TCGCTAGTTTCAGCATTTCTTTTAGTT 60.041 33.333 0.00 0.00 41.88 2.24
261 262 6.795098 TCGCTAGTTTCAGCATTTCTTTTA 57.205 33.333 0.00 0.00 41.88 1.52
266 269 3.788163 GCATTCGCTAGTTTCAGCATTTC 59.212 43.478 0.00 0.00 41.88 2.17
270 273 0.721154 CGCATTCGCTAGTTTCAGCA 59.279 50.000 0.00 0.00 41.88 4.41
282 285 0.246603 CCAACGTACGTTCGCATTCG 60.247 55.000 29.67 16.59 36.00 3.34
302 305 1.606994 CGTGTTGCTACCAGTAGGCAA 60.607 52.381 6.94 8.30 39.06 4.52
309 312 3.566261 CTGGCGTGTTGCTACCAG 58.434 61.111 0.00 0.00 45.43 4.00
311 314 2.380410 CGTCTGGCGTGTTGCTACC 61.380 63.158 0.00 0.00 45.43 3.18
362 365 1.203441 TGGTGCTTGCAGGGAGATCT 61.203 55.000 0.00 0.00 0.00 2.75
372 375 2.588585 GCGCTGTTTTGGTGCTTGC 61.589 57.895 0.00 0.00 37.25 4.01
403 406 3.888930 AGAAAACAATCGTGTGTGGGATT 59.111 39.130 0.00 0.00 38.27 3.01
467 474 0.808125 CTCTCTGCAGTAGCGTGTCT 59.192 55.000 14.67 0.00 46.23 3.41
473 480 1.989165 CGTGTTTCTCTCTGCAGTAGC 59.011 52.381 14.67 1.47 42.57 3.58
474 481 1.989165 GCGTGTTTCTCTCTGCAGTAG 59.011 52.381 14.67 12.62 0.00 2.57
475 482 1.336887 GGCGTGTTTCTCTCTGCAGTA 60.337 52.381 14.67 2.31 0.00 2.74
476 483 0.601311 GGCGTGTTTCTCTCTGCAGT 60.601 55.000 14.67 0.00 0.00 4.40
477 484 0.320247 AGGCGTGTTTCTCTCTGCAG 60.320 55.000 7.63 7.63 0.00 4.41
478 485 0.319900 GAGGCGTGTTTCTCTCTGCA 60.320 55.000 0.00 0.00 0.00 4.41
479 486 1.347817 CGAGGCGTGTTTCTCTCTGC 61.348 60.000 0.00 0.00 0.00 4.26
480 487 1.347817 GCGAGGCGTGTTTCTCTCTG 61.348 60.000 0.00 0.00 0.00 3.35
481 488 1.080434 GCGAGGCGTGTTTCTCTCT 60.080 57.895 0.00 0.00 0.00 3.10
482 489 2.095252 GGCGAGGCGTGTTTCTCTC 61.095 63.158 0.00 0.00 0.00 3.20
484 491 3.479269 CGGCGAGGCGTGTTTCTC 61.479 66.667 0.00 0.00 0.00 2.87
858 898 1.278985 GATCCATCCACACCACACTGA 59.721 52.381 0.00 0.00 0.00 3.41
860 900 1.661463 AGATCCATCCACACCACACT 58.339 50.000 0.00 0.00 0.00 3.55
895 940 6.017109 GTGACAGTGCAGGGGTTTTATATATG 60.017 42.308 0.00 0.00 0.00 1.78
902 947 0.755327 GGTGACAGTGCAGGGGTTTT 60.755 55.000 0.00 0.00 0.00 2.43
1085 1130 6.073440 GGACAAGAAGTTACTGCGAAATTGTA 60.073 38.462 0.00 0.00 0.00 2.41
1141 1200 0.520404 GCATTCACTGCCACTGACAG 59.480 55.000 0.00 0.00 45.66 3.51
1186 1245 0.319555 TTCACGACCGAGAAGCAAGG 60.320 55.000 0.00 0.00 0.00 3.61
1198 1257 0.804989 CTCCCCTGCATTTTCACGAC 59.195 55.000 0.00 0.00 0.00 4.34
1296 1355 3.801068 ATCCCTCCTCGCCTCTCCG 62.801 68.421 0.00 0.00 0.00 4.63
1301 1360 2.123077 CCTCATCCCTCCTCGCCT 60.123 66.667 0.00 0.00 0.00 5.52
1302 1361 3.934962 GCCTCATCCCTCCTCGCC 61.935 72.222 0.00 0.00 0.00 5.54
1306 1365 2.765807 CACGGCCTCATCCCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
1326 1385 2.113986 GCACCTGTGTTCCTGGCT 59.886 61.111 0.00 0.00 35.64 4.75
1332 1391 2.807247 AGGGTTTGCACCTGTGTTC 58.193 52.632 0.00 0.00 43.65 3.18
1413 1472 4.033776 CTCCTCCTTTGCCCGGCA 62.034 66.667 8.43 8.43 36.47 5.69
1550 1609 3.057033 AGCAATCAATCAGTGGCAAGAAC 60.057 43.478 0.00 0.00 0.00 3.01
1570 1629 2.159226 CCACTACTGTACCACTAGCAGC 60.159 54.545 0.00 0.00 33.87 5.25
1607 1669 5.758784 GCACTGTACTTTTTACTTCAGGAGT 59.241 40.000 0.00 0.00 42.55 3.85
1622 1684 0.833834 AGGAGCACTGGCACTGTACT 60.834 55.000 0.00 0.00 44.61 2.73
1623 1685 0.390472 GAGGAGCACTGGCACTGTAC 60.390 60.000 0.00 0.00 44.61 2.90
1624 1686 1.877576 CGAGGAGCACTGGCACTGTA 61.878 60.000 0.00 0.00 44.61 2.74
1625 1687 2.746359 GAGGAGCACTGGCACTGT 59.254 61.111 0.00 0.00 44.61 3.55
1626 1688 2.433838 CGAGGAGCACTGGCACTG 60.434 66.667 0.00 0.00 44.61 3.66
1627 1689 2.919856 ACGAGGAGCACTGGCACT 60.920 61.111 0.00 0.00 44.61 4.40
1628 1690 2.433318 GACGAGGAGCACTGGCAC 60.433 66.667 0.00 0.00 44.61 5.01
1629 1691 2.917227 TGACGAGGAGCACTGGCA 60.917 61.111 0.00 0.00 44.61 4.92
1631 1693 0.888619 TAACTGACGAGGAGCACTGG 59.111 55.000 0.00 0.00 0.00 4.00
1659 1725 4.632538 AACAGCACAAGTAAAGAACACC 57.367 40.909 0.00 0.00 0.00 4.16
1669 1735 5.822519 TGACAAGAATCTTAACAGCACAAGT 59.177 36.000 0.00 0.00 0.00 3.16
1675 1741 6.525976 GCAGATTTGACAAGAATCTTAACAGC 59.474 38.462 0.00 0.00 40.82 4.40
1680 1746 6.240894 AGTGGCAGATTTGACAAGAATCTTA 58.759 36.000 0.00 0.00 45.95 2.10
1681 1747 5.075493 AGTGGCAGATTTGACAAGAATCTT 58.925 37.500 0.00 0.00 45.95 2.40
1699 1765 2.203480 TTTGGGTGCTGGAGTGGC 60.203 61.111 0.00 0.00 0.00 5.01
1704 1770 1.398692 GTTCAAGTTTGGGTGCTGGA 58.601 50.000 0.00 0.00 0.00 3.86
1708 1774 1.111277 ACAGGTTCAAGTTTGGGTGC 58.889 50.000 0.00 0.00 0.00 5.01
1749 1815 0.462047 AATTGCCCTTCTCTACGCGG 60.462 55.000 12.47 0.00 0.00 6.46
1798 1868 1.073763 CATTCAGGGTCCAGTGGTTCA 59.926 52.381 9.54 0.00 0.00 3.18
1799 1869 1.351017 TCATTCAGGGTCCAGTGGTTC 59.649 52.381 9.54 3.84 0.00 3.62
1870 1940 2.821969 ACAAATTCAGCAGACCCATGAC 59.178 45.455 0.00 0.00 0.00 3.06
1876 1946 5.355071 TCATCATGTACAAATTCAGCAGACC 59.645 40.000 0.00 0.00 0.00 3.85
1971 2042 1.996786 GATTGTGATGTGGCCAGCGG 61.997 60.000 5.11 0.00 0.00 5.52
1972 2043 1.430632 GATTGTGATGTGGCCAGCG 59.569 57.895 5.11 0.00 0.00 5.18
1995 2066 5.670792 ACATGGTAGGAATCGAAGTTGTA 57.329 39.130 0.00 0.00 0.00 2.41
2018 2089 0.391661 ATGAAAGCGCGACCATCAGT 60.392 50.000 12.10 0.00 0.00 3.41
2023 2094 0.886938 TGGAAATGAAAGCGCGACCA 60.887 50.000 12.10 0.72 0.00 4.02
2026 2097 1.305219 CCCTGGAAATGAAAGCGCGA 61.305 55.000 12.10 0.00 0.00 5.87
2027 2098 1.137404 CCCTGGAAATGAAAGCGCG 59.863 57.895 0.00 0.00 0.00 6.86
2031 2102 2.232208 GGTTGCTCCCTGGAAATGAAAG 59.768 50.000 0.00 0.00 0.00 2.62
2051 2164 1.145156 TGGTTATGACGATGGCCGG 59.855 57.895 0.00 0.00 43.93 6.13
2097 2213 1.876849 AGTCCATCCTCAGCATGTCT 58.123 50.000 0.00 0.00 37.40 3.41
2218 2334 1.142778 GGAGTCGCATCTTCTCACGC 61.143 60.000 0.00 0.00 0.00 5.34
2221 2337 3.954258 TCAATAGGAGTCGCATCTTCTCA 59.046 43.478 0.00 0.00 0.00 3.27
2250 2371 7.963256 GCTAGCTAGCCTAACACCATCTGTG 62.963 52.000 31.67 0.00 45.80 3.66
2358 2507 1.269309 CCAACTCACCTCGATCGATCC 60.269 57.143 19.78 2.50 0.00 3.36
2382 2531 2.417097 GGCGCAACCAAAACTGCT 59.583 55.556 10.83 0.00 38.86 4.24
2476 2629 1.461127 CGTGCTGAAACCTGAAGTAGC 59.539 52.381 0.00 0.00 0.00 3.58
2477 2630 2.476619 CACGTGCTGAAACCTGAAGTAG 59.523 50.000 0.82 0.00 0.00 2.57
2495 2648 4.034258 CTGCTTGCCACAGCCACG 62.034 66.667 0.00 0.00 39.25 4.94
2517 2670 4.560856 CGGCGAGGAAGGAGAGCG 62.561 72.222 0.00 0.00 0.00 5.03
2522 2675 1.259609 TTCTTTACGGCGAGGAAGGA 58.740 50.000 16.62 7.77 0.00 3.36
2523 2676 2.088950 TTTCTTTACGGCGAGGAAGG 57.911 50.000 16.62 5.30 0.00 3.46
2524 2677 5.789710 TTTATTTCTTTACGGCGAGGAAG 57.210 39.130 16.62 14.07 0.00 3.46
2525 2678 5.448089 GCATTTATTTCTTTACGGCGAGGAA 60.448 40.000 16.62 1.14 0.00 3.36
2605 2763 1.554836 ATGATGATCGGAGCTCGGAT 58.445 50.000 30.45 30.45 38.41 4.18
2941 3118 1.162181 CGTCGCTCGGTCCAGGTATA 61.162 60.000 0.00 0.00 35.71 1.47
2942 3119 2.478890 CGTCGCTCGGTCCAGGTAT 61.479 63.158 0.00 0.00 35.71 2.73
2943 3120 3.129502 CGTCGCTCGGTCCAGGTA 61.130 66.667 0.00 0.00 35.71 3.08
2986 3163 3.121030 AAGCGAGCATGGTCGTGC 61.121 61.111 38.27 26.82 45.38 5.34
3018 3195 0.249120 TCCAAGCCCATCACGTACTG 59.751 55.000 0.00 0.00 0.00 2.74
3101 3281 0.963355 GCAGAGTGAGACCGTCCTCT 60.963 60.000 0.00 0.00 34.75 3.69
3104 3284 2.574399 GGCAGAGTGAGACCGTCC 59.426 66.667 0.00 0.00 0.00 4.79
3153 3333 3.898741 ACTTCTCCGAGTCCTTCTTTTCT 59.101 43.478 0.00 0.00 0.00 2.52
3164 3344 1.889829 CCTGAAGTGACTTCTCCGAGT 59.110 52.381 24.09 0.00 40.73 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.