Multiple sequence alignment - TraesCS5D01G258900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G258900 chr5D 100.000 6233 0 0 1 6233 365130881 365124649 0.000000e+00 11511.0
1 TraesCS5D01G258900 chr5D 87.283 346 28 6 574 905 365212762 365212419 1.270000e-101 381.0
2 TraesCS5D01G258900 chr5D 86.275 102 11 3 5878 5976 77531843 77531742 2.380000e-19 108.0
3 TraesCS5D01G258900 chr5A 92.162 4325 179 64 574 4831 466618546 466614315 0.000000e+00 5962.0
4 TraesCS5D01G258900 chr5A 94.591 758 30 7 4811 5563 466614285 466613534 0.000000e+00 1162.0
5 TraesCS5D01G258900 chr5B 93.955 2680 75 24 3057 5680 431076542 431073894 0.000000e+00 3971.0
6 TraesCS5D01G258900 chr5B 92.126 2883 95 48 250 3060 431079486 431076664 0.000000e+00 3945.0
7 TraesCS5D01G258900 chr5B 88.249 434 27 10 576 987 431350133 431349702 1.210000e-136 497.0
8 TraesCS5D01G258900 chr5B 95.597 159 5 2 5720 5877 431073896 431073739 2.880000e-63 254.0
9 TraesCS5D01G258900 chr5B 88.889 189 14 5 5923 6110 431073579 431073397 6.290000e-55 226.0
10 TraesCS5D01G258900 chr5B 94.545 110 4 2 5801 5908 431073741 431073632 1.070000e-37 169.0
11 TraesCS5D01G258900 chr5B 95.000 100 4 1 6134 6233 431073333 431073235 8.370000e-34 156.0
12 TraesCS5D01G258900 chr1B 82.789 796 69 29 706 1468 50182652 50183412 0.000000e+00 649.0
13 TraesCS5D01G258900 chr1B 85.470 117 12 5 5879 5990 268454625 268454741 3.950000e-22 117.0
14 TraesCS5D01G258900 chr1B 82.787 122 13 6 5876 5990 426854632 426854752 1.110000e-17 102.0
15 TraesCS5D01G258900 chr6B 86.842 266 17 4 1 249 560697058 560697322 1.320000e-71 281.0
16 TraesCS5D01G258900 chr7B 86.792 265 12 7 1 247 602072113 602071854 2.210000e-69 274.0
17 TraesCS5D01G258900 chr6A 86.792 265 12 7 1 247 141368027 141367768 2.210000e-69 274.0
18 TraesCS5D01G258900 chr6A 82.329 249 20 5 1 249 206362798 206363022 1.770000e-45 195.0
19 TraesCS5D01G258900 chr6A 81.000 200 25 8 59 249 50182996 50182801 5.040000e-31 147.0
20 TraesCS5D01G258900 chr7A 84.211 266 17 12 7 247 167988334 167988069 1.040000e-57 235.0
21 TraesCS5D01G258900 chr7A 85.792 183 13 7 75 249 668708690 668708513 1.380000e-41 182.0
22 TraesCS5D01G258900 chr1A 83.333 276 20 13 1 251 575508905 575509179 1.350000e-56 231.0
23 TraesCS5D01G258900 chr3A 85.000 200 17 8 58 249 686841680 686841486 2.290000e-44 191.0
24 TraesCS5D01G258900 chr3A 85.556 180 14 6 75 246 432400258 432400433 1.790000e-40 178.0
25 TraesCS5D01G258900 chr3B 90.179 112 9 2 140 251 754222189 754222080 1.810000e-30 145.0
26 TraesCS5D01G258900 chr3B 85.714 105 10 4 5874 5975 385480506 385480608 8.550000e-19 106.0
27 TraesCS5D01G258900 chr6D 82.394 142 19 6 5877 6016 457368706 457368569 1.100000e-22 119.0
28 TraesCS5D01G258900 chr3D 84.167 120 12 5 5878 5990 458436218 458436337 6.610000e-20 110.0
29 TraesCS5D01G258900 chr2B 84.167 120 11 4 5879 5990 353764837 353764718 6.610000e-20 110.0
30 TraesCS5D01G258900 chr2B 78.261 161 19 12 5869 6016 354140007 354139850 8.610000e-14 89.8
31 TraesCS5D01G258900 chr7D 83.929 112 15 2 5879 5987 203358735 203358846 3.070000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G258900 chr5D 365124649 365130881 6232 True 11511.0 11511 100.0000 1 6233 1 chr5D.!!$R2 6232
1 TraesCS5D01G258900 chr5A 466613534 466618546 5012 True 3562.0 5962 93.3765 574 5563 2 chr5A.!!$R1 4989
2 TraesCS5D01G258900 chr5B 431073235 431079486 6251 True 1453.5 3971 93.3520 250 6233 6 chr5B.!!$R2 5983
3 TraesCS5D01G258900 chr1B 50182652 50183412 760 False 649.0 649 82.7890 706 1468 1 chr1B.!!$F1 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.030908 GGGATTCGGTCTGCTACTCG 59.969 60.000 0.0 0.0 0.00 4.18 F
293 294 0.036388 GGATGAACAGAACCTCGCCA 60.036 55.000 0.0 0.0 0.00 5.69 F
820 834 0.386113 CGCCCTACAGCCTTCTAGAC 59.614 60.000 0.0 0.0 0.00 2.59 F
1525 1605 1.065854 GTTCACAGCCTCTACAGCCAT 60.066 52.381 0.0 0.0 0.00 4.40 F
1852 1932 3.007398 AGTCACAATTCAGTCTCAGACCC 59.993 47.826 0.0 0.0 32.18 4.46 F
3325 3554 3.256704 ACAGGGTGAGGTGGAATTTAGA 58.743 45.455 0.0 0.0 0.00 2.10 F
4126 4355 1.301716 GAGTGCAAAGACCGCTCCA 60.302 57.895 0.0 0.0 34.58 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1225 1284 0.896940 TCGGCCTGGTACTCGAACTT 60.897 55.000 0.00 0.00 0.00 2.66 R
2199 2284 0.104671 AACATGCAGCAACAACCACC 59.895 50.000 0.00 0.00 0.00 4.61 R
2200 2285 1.938625 AAACATGCAGCAACAACCAC 58.061 45.000 0.00 0.00 0.00 4.16 R
3519 3748 1.746220 GCGGCCCATTACAACATTGTA 59.254 47.619 0.00 0.22 42.35 2.41 R
3687 3916 5.065988 ACACACTAAAGTAAACAACTGCAGG 59.934 40.000 19.93 3.21 38.88 4.85 R
4415 4658 0.106015 TCCTCATCCTCATCGCCTGA 60.106 55.000 0.00 0.00 0.00 3.86 R
5680 6028 0.107410 TGGCCTCAACACAACTCGTT 60.107 50.000 3.32 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.458163 CCGCCGGAGCCTCAACTA 61.458 66.667 5.05 0.00 34.57 2.24
27 28 2.105128 CGCCGGAGCCTCAACTAG 59.895 66.667 5.05 0.00 34.57 2.57
28 29 2.202946 GCCGGAGCCTCAACTAGC 60.203 66.667 5.05 0.00 0.00 3.42
29 30 2.105128 CCGGAGCCTCAACTAGCG 59.895 66.667 0.00 0.00 0.00 4.26
30 31 2.583593 CGGAGCCTCAACTAGCGC 60.584 66.667 0.00 0.00 0.00 5.92
31 32 2.896443 GGAGCCTCAACTAGCGCT 59.104 61.111 17.26 17.26 35.29 5.92
32 33 1.725557 CGGAGCCTCAACTAGCGCTA 61.726 60.000 17.75 17.75 33.48 4.26
33 34 0.031449 GGAGCCTCAACTAGCGCTAG 59.969 60.000 36.70 36.70 39.04 3.42
34 35 0.031449 GAGCCTCAACTAGCGCTAGG 59.969 60.000 39.50 29.07 37.49 3.02
35 36 0.684805 AGCCTCAACTAGCGCTAGGT 60.685 55.000 39.50 35.00 37.49 3.08
36 37 0.175989 GCCTCAACTAGCGCTAGGTT 59.824 55.000 39.50 28.96 37.49 3.50
37 38 1.407979 GCCTCAACTAGCGCTAGGTTA 59.592 52.381 39.50 28.38 37.49 2.85
38 39 2.544069 GCCTCAACTAGCGCTAGGTTAG 60.544 54.545 39.50 34.17 37.49 2.34
39 40 2.034812 CCTCAACTAGCGCTAGGTTAGG 59.965 54.545 36.18 36.18 37.76 2.69
40 41 2.029623 TCAACTAGCGCTAGGTTAGGG 58.970 52.381 39.50 25.66 41.24 3.53
41 42 2.029623 CAACTAGCGCTAGGTTAGGGA 58.970 52.381 39.50 9.90 40.83 4.20
42 43 2.429610 CAACTAGCGCTAGGTTAGGGAA 59.570 50.000 39.50 9.14 40.83 3.97
43 44 2.743553 ACTAGCGCTAGGTTAGGGAAA 58.256 47.619 39.50 8.61 40.83 3.13
44 45 2.694109 ACTAGCGCTAGGTTAGGGAAAG 59.306 50.000 39.50 19.50 40.83 2.62
45 46 0.831307 AGCGCTAGGTTAGGGAAAGG 59.169 55.000 8.99 0.00 40.83 3.11
46 47 0.179054 GCGCTAGGTTAGGGAAAGGG 60.179 60.000 0.00 0.00 40.83 3.95
47 48 0.468648 CGCTAGGTTAGGGAAAGGGG 59.531 60.000 0.00 0.00 40.83 4.79
48 49 1.889174 GCTAGGTTAGGGAAAGGGGA 58.111 55.000 0.00 0.00 0.00 4.81
49 50 2.202707 GCTAGGTTAGGGAAAGGGGAA 58.797 52.381 0.00 0.00 0.00 3.97
50 51 2.579400 GCTAGGTTAGGGAAAGGGGAAA 59.421 50.000 0.00 0.00 0.00 3.13
51 52 3.371702 GCTAGGTTAGGGAAAGGGGAAAG 60.372 52.174 0.00 0.00 0.00 2.62
52 53 2.000803 AGGTTAGGGAAAGGGGAAAGG 58.999 52.381 0.00 0.00 0.00 3.11
53 54 1.006758 GGTTAGGGAAAGGGGAAAGGG 59.993 57.143 0.00 0.00 0.00 3.95
54 55 1.006758 GTTAGGGAAAGGGGAAAGGGG 59.993 57.143 0.00 0.00 0.00 4.79
55 56 0.503805 TAGGGAAAGGGGAAAGGGGA 59.496 55.000 0.00 0.00 0.00 4.81
56 57 0.178770 AGGGAAAGGGGAAAGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
57 58 0.716591 GGGAAAGGGGAAAGGGGATT 59.283 55.000 0.00 0.00 0.00 3.01
58 59 1.343075 GGGAAAGGGGAAAGGGGATTC 60.343 57.143 0.00 0.00 0.00 2.52
59 60 1.685180 GGAAAGGGGAAAGGGGATTCG 60.685 57.143 0.00 0.00 0.00 3.34
60 61 0.335019 AAAGGGGAAAGGGGATTCGG 59.665 55.000 0.00 0.00 0.00 4.30
61 62 0.849540 AAGGGGAAAGGGGATTCGGT 60.850 55.000 0.00 0.00 0.00 4.69
62 63 1.226542 GGGGAAAGGGGATTCGGTC 59.773 63.158 0.00 0.00 0.00 4.79
63 64 1.279749 GGGGAAAGGGGATTCGGTCT 61.280 60.000 0.00 0.00 0.00 3.85
64 65 0.107165 GGGAAAGGGGATTCGGTCTG 60.107 60.000 0.00 0.00 0.00 3.51
65 66 0.748367 GGAAAGGGGATTCGGTCTGC 60.748 60.000 0.00 0.00 0.00 4.26
66 67 0.253327 GAAAGGGGATTCGGTCTGCT 59.747 55.000 0.00 0.00 0.00 4.24
67 68 1.485066 GAAAGGGGATTCGGTCTGCTA 59.515 52.381 0.00 0.00 0.00 3.49
68 69 0.831307 AAGGGGATTCGGTCTGCTAC 59.169 55.000 0.00 0.00 0.00 3.58
69 70 0.032017 AGGGGATTCGGTCTGCTACT 60.032 55.000 0.00 0.00 0.00 2.57
70 71 0.389757 GGGGATTCGGTCTGCTACTC 59.610 60.000 0.00 0.00 0.00 2.59
71 72 0.030908 GGGATTCGGTCTGCTACTCG 59.969 60.000 0.00 0.00 0.00 4.18
72 73 0.595310 GGATTCGGTCTGCTACTCGC 60.595 60.000 0.00 0.00 39.77 5.03
73 74 0.930742 GATTCGGTCTGCTACTCGCG 60.931 60.000 0.00 0.00 43.27 5.87
74 75 2.938539 ATTCGGTCTGCTACTCGCGC 62.939 60.000 0.00 0.00 43.27 6.86
75 76 4.476410 CGGTCTGCTACTCGCGCA 62.476 66.667 8.75 0.00 43.27 6.09
76 77 2.881352 GGTCTGCTACTCGCGCAC 60.881 66.667 8.75 0.00 43.27 5.34
77 78 3.241059 GTCTGCTACTCGCGCACG 61.241 66.667 8.75 0.00 43.27 5.34
86 87 4.400109 TCGCGCACGAGACCAGAC 62.400 66.667 8.75 0.00 45.12 3.51
87 88 4.700365 CGCGCACGAGACCAGACA 62.700 66.667 8.75 0.00 43.93 3.41
88 89 3.106407 GCGCACGAGACCAGACAC 61.106 66.667 0.30 0.00 0.00 3.67
89 90 2.430921 CGCACGAGACCAGACACC 60.431 66.667 0.00 0.00 0.00 4.16
90 91 2.048127 GCACGAGACCAGACACCC 60.048 66.667 0.00 0.00 0.00 4.61
91 92 2.258591 CACGAGACCAGACACCCG 59.741 66.667 0.00 0.00 0.00 5.28
92 93 2.989824 ACGAGACCAGACACCCGG 60.990 66.667 0.00 0.00 0.00 5.73
93 94 2.989824 CGAGACCAGACACCCGGT 60.990 66.667 0.00 0.00 38.56 5.28
101 102 4.436998 GACACCCGGTCGCTCCTG 62.437 72.222 0.00 0.00 36.65 3.86
103 104 4.436998 CACCCGGTCGCTCCTGTC 62.437 72.222 0.00 0.00 0.00 3.51
104 105 4.680537 ACCCGGTCGCTCCTGTCT 62.681 66.667 0.00 0.00 0.00 3.41
105 106 4.135153 CCCGGTCGCTCCTGTCTG 62.135 72.222 0.00 0.00 0.00 3.51
106 107 4.135153 CCGGTCGCTCCTGTCTGG 62.135 72.222 0.00 0.00 37.10 3.86
107 108 4.803426 CGGTCGCTCCTGTCTGGC 62.803 72.222 0.00 0.00 35.26 4.85
108 109 3.386237 GGTCGCTCCTGTCTGGCT 61.386 66.667 0.00 0.00 35.26 4.75
109 110 2.183046 GTCGCTCCTGTCTGGCTC 59.817 66.667 0.00 0.00 35.26 4.70
110 111 3.071206 TCGCTCCTGTCTGGCTCC 61.071 66.667 0.00 0.00 35.26 4.70
111 112 4.154347 CGCTCCTGTCTGGCTCCC 62.154 72.222 0.00 0.00 35.26 4.30
112 113 3.791586 GCTCCTGTCTGGCTCCCC 61.792 72.222 0.00 0.00 35.26 4.81
113 114 3.465403 CTCCTGTCTGGCTCCCCG 61.465 72.222 0.00 0.00 35.26 5.73
116 117 3.790437 CTGTCTGGCTCCCCGCAT 61.790 66.667 0.00 0.00 41.67 4.73
117 118 3.746949 CTGTCTGGCTCCCCGCATC 62.747 68.421 0.00 0.00 41.67 3.91
118 119 4.899239 GTCTGGCTCCCCGCATCG 62.899 72.222 0.00 0.00 41.67 3.84
131 132 4.200851 CATCGCTGCGTCGCTGTG 62.201 66.667 26.00 26.00 38.89 3.66
132 133 4.724602 ATCGCTGCGTCGCTGTGT 62.725 61.111 28.94 17.72 38.70 3.72
133 134 4.942481 TCGCTGCGTCGCTGTGTT 62.942 61.111 28.94 0.00 38.70 3.32
134 135 4.000557 CGCTGCGTCGCTGTGTTT 62.001 61.111 24.31 0.00 34.25 2.83
135 136 2.425773 GCTGCGTCGCTGTGTTTG 60.426 61.111 22.71 4.80 0.00 2.93
136 137 2.249309 CTGCGTCGCTGTGTTTGG 59.751 61.111 19.50 0.00 0.00 3.28
137 138 3.240606 CTGCGTCGCTGTGTTTGGG 62.241 63.158 19.50 0.00 0.00 4.12
138 139 3.276846 GCGTCGCTGTGTTTGGGT 61.277 61.111 10.68 0.00 0.00 4.51
139 140 2.830285 GCGTCGCTGTGTTTGGGTT 61.830 57.895 10.68 0.00 0.00 4.11
140 141 1.010125 CGTCGCTGTGTTTGGGTTG 60.010 57.895 0.00 0.00 0.00 3.77
141 142 1.358759 GTCGCTGTGTTTGGGTTGG 59.641 57.895 0.00 0.00 0.00 3.77
142 143 1.826054 TCGCTGTGTTTGGGTTGGG 60.826 57.895 0.00 0.00 0.00 4.12
143 144 2.421314 GCTGTGTTTGGGTTGGGC 59.579 61.111 0.00 0.00 0.00 5.36
144 145 3.137687 CTGTGTTTGGGTTGGGCC 58.862 61.111 0.00 0.00 0.00 5.80
145 146 1.760086 CTGTGTTTGGGTTGGGCCA 60.760 57.895 0.00 0.00 39.65 5.36
146 147 1.306141 TGTGTTTGGGTTGGGCCAA 60.306 52.632 16.66 16.66 39.65 4.52
147 148 1.333636 TGTGTTTGGGTTGGGCCAAG 61.334 55.000 21.62 0.00 39.65 3.61
148 149 1.002274 TGTTTGGGTTGGGCCAAGT 59.998 52.632 21.62 0.00 39.65 3.16
149 150 1.045911 TGTTTGGGTTGGGCCAAGTC 61.046 55.000 21.62 15.12 39.65 3.01
150 151 1.045911 GTTTGGGTTGGGCCAAGTCA 61.046 55.000 21.62 17.65 39.65 3.41
151 152 1.045911 TTTGGGTTGGGCCAAGTCAC 61.046 55.000 21.62 11.00 39.65 3.67
152 153 1.943730 TTGGGTTGGGCCAAGTCACT 61.944 55.000 21.62 0.00 39.65 3.41
153 154 1.603739 GGGTTGGGCCAAGTCACTC 60.604 63.158 21.62 4.34 39.65 3.51
154 155 1.603739 GGTTGGGCCAAGTCACTCC 60.604 63.158 21.62 12.59 37.17 3.85
155 156 1.150536 GTTGGGCCAAGTCACTCCA 59.849 57.895 21.62 0.00 0.00 3.86
156 157 1.150536 TTGGGCCAAGTCACTCCAC 59.849 57.895 16.66 0.00 0.00 4.02
157 158 1.640593 TTGGGCCAAGTCACTCCACA 61.641 55.000 16.66 0.00 0.00 4.17
158 159 1.600916 GGGCCAAGTCACTCCACAC 60.601 63.158 4.39 0.00 0.00 3.82
159 160 1.600916 GGCCAAGTCACTCCACACC 60.601 63.158 0.00 0.00 0.00 4.16
160 161 1.961277 GCCAAGTCACTCCACACCG 60.961 63.158 0.00 0.00 0.00 4.94
161 162 1.445942 CCAAGTCACTCCACACCGT 59.554 57.895 0.00 0.00 0.00 4.83
162 163 0.677288 CCAAGTCACTCCACACCGTA 59.323 55.000 0.00 0.00 0.00 4.02
163 164 1.275291 CCAAGTCACTCCACACCGTAT 59.725 52.381 0.00 0.00 0.00 3.06
164 165 2.494471 CCAAGTCACTCCACACCGTATA 59.506 50.000 0.00 0.00 0.00 1.47
165 166 3.132289 CCAAGTCACTCCACACCGTATAT 59.868 47.826 0.00 0.00 0.00 0.86
166 167 4.382685 CCAAGTCACTCCACACCGTATATT 60.383 45.833 0.00 0.00 0.00 1.28
167 168 4.386867 AGTCACTCCACACCGTATATTG 57.613 45.455 0.00 0.00 0.00 1.90
168 169 4.021229 AGTCACTCCACACCGTATATTGA 58.979 43.478 0.00 0.00 0.00 2.57
169 170 4.649674 AGTCACTCCACACCGTATATTGAT 59.350 41.667 0.00 0.00 0.00 2.57
170 171 5.831525 AGTCACTCCACACCGTATATTGATA 59.168 40.000 0.00 0.00 0.00 2.15
171 172 6.493802 AGTCACTCCACACCGTATATTGATAT 59.506 38.462 0.00 0.00 0.00 1.63
172 173 7.668469 AGTCACTCCACACCGTATATTGATATA 59.332 37.037 0.00 0.00 0.00 0.86
173 174 8.467598 GTCACTCCACACCGTATATTGATATAT 58.532 37.037 0.00 0.00 0.00 0.86
174 175 8.466798 TCACTCCACACCGTATATTGATATATG 58.533 37.037 0.00 4.07 33.85 1.78
175 176 8.251026 CACTCCACACCGTATATTGATATATGT 58.749 37.037 0.00 1.65 32.74 2.29
176 177 9.470399 ACTCCACACCGTATATTGATATATGTA 57.530 33.333 0.00 0.00 32.74 2.29
177 178 9.952188 CTCCACACCGTATATTGATATATGTAG 57.048 37.037 0.00 4.60 32.74 2.74
178 179 9.470399 TCCACACCGTATATTGATATATGTAGT 57.530 33.333 0.00 5.05 32.74 2.73
212 213 7.489574 TTTGCACAAAATTCTTTGGTATTCC 57.510 32.000 0.00 0.00 45.30 3.01
213 214 6.166984 TGCACAAAATTCTTTGGTATTCCA 57.833 33.333 2.93 0.00 45.30 3.53
214 215 6.222389 TGCACAAAATTCTTTGGTATTCCAG 58.778 36.000 2.93 0.00 45.30 3.86
215 216 5.639082 GCACAAAATTCTTTGGTATTCCAGG 59.361 40.000 2.93 0.00 45.30 4.45
216 217 6.165577 CACAAAATTCTTTGGTATTCCAGGG 58.834 40.000 2.93 0.00 45.30 4.45
217 218 6.014669 CACAAAATTCTTTGGTATTCCAGGGA 60.015 38.462 2.93 0.00 45.30 4.20
218 219 6.556874 ACAAAATTCTTTGGTATTCCAGGGAA 59.443 34.615 2.75 2.75 45.30 3.97
219 220 7.237471 ACAAAATTCTTTGGTATTCCAGGGAAT 59.763 33.333 17.09 17.09 45.30 3.01
220 221 8.757877 CAAAATTCTTTGGTATTCCAGGGAATA 58.242 33.333 15.15 15.15 45.22 1.75
235 236 1.709115 GGAATACCCAGGAATACCCCC 59.291 57.143 0.00 0.00 36.73 5.40
236 237 2.424793 GAATACCCAGGAATACCCCCA 58.575 52.381 0.00 0.00 36.73 4.96
237 238 2.133858 ATACCCAGGAATACCCCCAG 57.866 55.000 0.00 0.00 36.73 4.45
238 239 0.696485 TACCCAGGAATACCCCCAGC 60.696 60.000 0.00 0.00 36.73 4.85
239 240 1.697754 CCCAGGAATACCCCCAGCT 60.698 63.158 0.00 0.00 36.73 4.24
240 241 1.709994 CCCAGGAATACCCCCAGCTC 61.710 65.000 0.00 0.00 36.73 4.09
241 242 1.709994 CCAGGAATACCCCCAGCTCC 61.710 65.000 0.00 0.00 36.73 4.70
242 243 1.766461 AGGAATACCCCCAGCTCCG 60.766 63.158 0.00 0.00 36.73 4.63
243 244 2.111251 GAATACCCCCAGCTCCGC 59.889 66.667 0.00 0.00 0.00 5.54
244 245 3.477578 GAATACCCCCAGCTCCGCC 62.478 68.421 0.00 0.00 0.00 6.13
245 246 4.815973 ATACCCCCAGCTCCGCCA 62.816 66.667 0.00 0.00 0.00 5.69
246 247 4.815973 TACCCCCAGCTCCGCCAT 62.816 66.667 0.00 0.00 0.00 4.40
262 263 0.612732 CCATTGCATCCCACCACAGT 60.613 55.000 0.00 0.00 0.00 3.55
281 282 3.512516 GGCTGGCGCTGGATGAAC 61.513 66.667 7.64 0.00 36.09 3.18
290 291 1.363744 GCTGGATGAACAGAACCTCG 58.636 55.000 0.00 0.00 40.97 4.63
293 294 0.036388 GGATGAACAGAACCTCGCCA 60.036 55.000 0.00 0.00 0.00 5.69
296 297 2.027625 GAACAGAACCTCGCCACCG 61.028 63.158 0.00 0.00 0.00 4.94
297 298 2.710724 GAACAGAACCTCGCCACCGT 62.711 60.000 0.00 0.00 35.54 4.83
326 327 0.837272 CGAGAGAGGAGAGGGAGAGT 59.163 60.000 0.00 0.00 0.00 3.24
344 345 2.760385 GAGGGAGGGGAGTGACCG 60.760 72.222 0.00 0.00 40.11 4.79
347 348 2.760385 GGAGGGGAGTGACCGAGG 60.760 72.222 0.00 0.00 40.11 4.63
348 349 2.760385 GAGGGGAGTGACCGAGGG 60.760 72.222 0.00 0.00 40.11 4.30
349 350 3.273654 AGGGGAGTGACCGAGGGA 61.274 66.667 0.00 0.00 40.11 4.20
350 351 2.760385 GGGGAGTGACCGAGGGAG 60.760 72.222 0.00 0.00 40.11 4.30
351 352 3.462678 GGGAGTGACCGAGGGAGC 61.463 72.222 0.00 0.00 40.11 4.70
352 353 3.827898 GGAGTGACCGAGGGAGCG 61.828 72.222 0.00 0.00 0.00 5.03
353 354 4.500116 GAGTGACCGAGGGAGCGC 62.500 72.222 0.00 0.00 0.00 5.92
355 356 4.500116 GTGACCGAGGGAGCGCTC 62.500 72.222 29.38 29.38 0.00 5.03
381 382 2.125912 CCCAGTCGCTTCGGACAG 60.126 66.667 0.00 0.00 39.42 3.51
397 398 3.688159 AGAGGCCGTTAACGCCGT 61.688 61.111 22.43 13.44 39.38 5.68
400 401 3.781162 GGCCGTTAACGCCGTGTC 61.781 66.667 22.43 6.66 38.18 3.67
436 437 2.093106 ACGTGAGGGAGTAGTCATGTC 58.907 52.381 0.00 0.00 38.30 3.06
459 460 4.670227 AAACGTGCTCAGAAAATAGCTC 57.330 40.909 0.00 0.00 39.53 4.09
494 495 2.107950 TGCCAGAAATTCGATTCGGT 57.892 45.000 6.18 0.00 34.46 4.69
502 503 4.858692 AGAAATTCGATTCGGTGCAAAATG 59.141 37.500 6.18 0.00 34.46 2.32
506 507 1.469595 CGATTCGGTGCAAAATGCCAT 60.470 47.619 0.00 0.00 44.23 4.40
511 512 2.757314 TCGGTGCAAAATGCCATGAATA 59.243 40.909 0.00 0.00 44.23 1.75
540 542 3.950087 TGCTAATCGTGACATGAATGC 57.050 42.857 0.00 7.12 0.00 3.56
559 561 1.833860 CGACGGTTGTGTGCATTTTT 58.166 45.000 0.00 0.00 0.00 1.94
560 562 2.855187 GCGACGGTTGTGTGCATTTTTA 60.855 45.455 0.00 0.00 0.00 1.52
561 563 2.717011 CGACGGTTGTGTGCATTTTTAC 59.283 45.455 0.00 0.00 0.00 2.01
563 565 4.356289 GACGGTTGTGTGCATTTTTACTT 58.644 39.130 0.00 0.00 0.00 2.24
564 566 4.356289 ACGGTTGTGTGCATTTTTACTTC 58.644 39.130 0.00 0.00 0.00 3.01
644 649 2.350514 GGAGAAGCTGGCAGCAGT 59.649 61.111 38.09 26.59 45.56 4.40
816 830 3.003173 TGCGCCCTACAGCCTTCT 61.003 61.111 4.18 0.00 0.00 2.85
820 834 0.386113 CGCCCTACAGCCTTCTAGAC 59.614 60.000 0.00 0.00 0.00 2.59
1192 1251 4.735132 CCGCCGTTGCCGAGAAGA 62.735 66.667 0.00 0.00 35.63 2.87
1278 1337 2.290960 GGCTCCAATCCTTGTGTACCTT 60.291 50.000 0.00 0.00 0.00 3.50
1350 1417 2.357881 TGGTTGCTGCGCTCTCTG 60.358 61.111 9.73 0.00 0.00 3.35
1427 1503 3.472652 TGCCAATTCGTTTGTGAGTAGT 58.527 40.909 1.37 0.00 33.15 2.73
1432 1511 6.913673 GCCAATTCGTTTGTGAGTAGTTTTTA 59.086 34.615 1.37 0.00 33.15 1.52
1477 1557 3.733337 TGCAGTTTCTCTTTCTGTCCTC 58.267 45.455 0.00 0.00 0.00 3.71
1525 1605 1.065854 GTTCACAGCCTCTACAGCCAT 60.066 52.381 0.00 0.00 0.00 4.40
1634 1714 3.037851 TGCTGACTATCTGACCTGGAT 57.962 47.619 0.00 0.00 0.00 3.41
1800 1880 7.809546 ATCACGTATGTTCTTCTCTATCAGA 57.190 36.000 0.00 0.00 0.00 3.27
1812 1892 5.273674 TCTCTATCAGATTGGCAGTTCAG 57.726 43.478 0.00 0.00 0.00 3.02
1824 1904 4.401022 TGGCAGTTCAGTCATCAATTCTT 58.599 39.130 0.00 0.00 0.00 2.52
1826 1906 5.412594 TGGCAGTTCAGTCATCAATTCTTAC 59.587 40.000 0.00 0.00 0.00 2.34
1852 1932 3.007398 AGTCACAATTCAGTCTCAGACCC 59.993 47.826 0.00 0.00 32.18 4.46
2172 2257 8.511748 AAGGTACAGAATATCTATTGGATGGT 57.488 34.615 0.00 0.00 35.98 3.55
2174 2259 7.038017 AGGTACAGAATATCTATTGGATGGTGG 60.038 40.741 0.00 0.00 35.98 4.61
2193 2278 7.581213 TGGTGGACCATTATACATGAAATTC 57.419 36.000 0.00 0.00 42.01 2.17
2194 2279 7.353525 TGGTGGACCATTATACATGAAATTCT 58.646 34.615 0.00 0.00 42.01 2.40
2195 2280 7.285172 TGGTGGACCATTATACATGAAATTCTG 59.715 37.037 0.00 0.00 42.01 3.02
2196 2281 7.285401 GGTGGACCATTATACATGAAATTCTGT 59.715 37.037 0.00 0.00 35.64 3.41
2197 2282 9.337396 GTGGACCATTATACATGAAATTCTGTA 57.663 33.333 0.00 7.41 32.75 2.74
2201 2286 9.866655 ACCATTATACATGAAATTCTGTATGGT 57.133 29.630 19.06 17.80 37.39 3.55
2204 2289 9.866655 ATTATACATGAAATTCTGTATGGTGGT 57.133 29.630 19.06 4.93 38.63 4.16
2492 2578 9.601217 ACTGATATTCTGTACAACCTTTATCAC 57.399 33.333 0.00 0.00 0.00 3.06
2493 2579 8.958119 TGATATTCTGTACAACCTTTATCACC 57.042 34.615 0.00 0.00 0.00 4.02
2826 2927 5.731686 GCAGAGGTTAGCTTTATGTGCATTC 60.732 44.000 0.00 0.00 0.00 2.67
3145 3373 7.106239 TGTAGATGAGAAATCCAAAGGAAGTC 58.894 38.462 0.00 0.00 34.34 3.01
3325 3554 3.256704 ACAGGGTGAGGTGGAATTTAGA 58.743 45.455 0.00 0.00 0.00 2.10
3516 3745 9.471702 AGCTACTGTACTTCTTTGGTTACTATA 57.528 33.333 0.00 0.00 0.00 1.31
3687 3916 5.831997 ACTGGAAAGCATTTGTGACTTAAC 58.168 37.500 0.00 0.00 39.27 2.01
3708 3937 5.751243 ACCTGCAGTTGTTTACTTTAGTG 57.249 39.130 13.81 0.00 33.85 2.74
3836 4065 6.070710 ACAAGGATAACAAGGAGGTAAGAGTC 60.071 42.308 0.00 0.00 0.00 3.36
3849 4078 6.127563 GGAGGTAAGAGTCTAACTTCCTCTTG 60.128 46.154 19.04 0.00 43.47 3.02
3860 4089 2.175715 ACTTCCTCTTGTTCCCAAGCTT 59.824 45.455 0.00 0.00 46.33 3.74
3870 4099 5.096443 TGTTCCCAAGCTTTTGTTTCATT 57.904 34.783 0.00 0.00 0.00 2.57
3871 4100 6.227298 TGTTCCCAAGCTTTTGTTTCATTA 57.773 33.333 0.00 0.00 0.00 1.90
4012 4241 2.489938 TGCTGCGGTTTTATTCCTCT 57.510 45.000 0.00 0.00 0.00 3.69
4039 4268 9.626045 AAAAATGAAACGGATTTGATAAGTCTC 57.374 29.630 0.00 0.00 0.00 3.36
4072 4301 1.416401 GAGAATATGCCCGAGACCCAA 59.584 52.381 0.00 0.00 0.00 4.12
4078 4307 2.757077 CCCGAGACCCAAAAGGCT 59.243 61.111 0.00 0.00 40.58 4.58
4093 4322 7.615757 ACCCAAAAGGCTATCTATTATATTGCC 59.384 37.037 6.46 6.46 43.09 4.52
4126 4355 1.301716 GAGTGCAAAGACCGCTCCA 60.302 57.895 0.00 0.00 34.58 3.86
4186 4415 6.000891 TGTGCTTATCTTGTTGTTGATCAC 57.999 37.500 0.00 0.00 0.00 3.06
4195 4424 7.514784 TCTTGTTGTTGATCACAGAATTGAT 57.485 32.000 0.00 0.00 39.02 2.57
4522 4765 3.037549 AGTTGCCAAGGTCCAAATTTCA 58.962 40.909 0.00 0.00 0.00 2.69
4612 4855 3.378427 GGTAGCTTGATGGTTCATTCACC 59.622 47.826 0.00 0.00 37.34 4.02
4625 4868 3.096092 TCATTCACCTACCCAATTTGGC 58.904 45.455 10.10 0.00 35.79 4.52
4656 4899 2.943033 GTGCAGTTGTTGTCCTAACACT 59.057 45.455 0.00 0.00 34.35 3.55
4657 4900 3.377172 GTGCAGTTGTTGTCCTAACACTT 59.623 43.478 0.00 0.00 34.35 3.16
4658 4901 3.376859 TGCAGTTGTTGTCCTAACACTTG 59.623 43.478 0.00 0.00 34.35 3.16
4798 5048 6.595326 TGAGTGTAAGATACCTGCAATCTTTG 59.405 38.462 15.43 0.00 40.03 2.77
5362 5676 4.415881 TTGTAAGAACACTGAGCTCCAA 57.584 40.909 12.15 0.82 34.61 3.53
5382 5696 5.010112 TCCAAAATCTTGTTTGTTATCGCCA 59.990 36.000 0.00 0.00 36.87 5.69
5430 5745 5.624344 TTTGACGGCCGTGAAATAATTTA 57.376 34.783 39.65 14.23 0.00 1.40
5541 5862 8.898761 TGTATACAAAAACTGAGACAACATGTT 58.101 29.630 4.92 4.92 0.00 2.71
5543 5864 4.864247 ACAAAAACTGAGACAACATGTTGC 59.136 37.500 33.23 25.50 44.03 4.17
5545 5866 2.346766 ACTGAGACAACATGTTGCCA 57.653 45.000 33.23 25.92 44.03 4.92
5660 6008 2.094575 GGATATTTGTTGTACGTGCGCA 59.905 45.455 5.66 5.66 0.00 6.09
5677 6025 0.539051 GCACTAGCACTCCTGTGGAT 59.461 55.000 0.00 0.00 43.97 3.41
5678 6026 1.065854 GCACTAGCACTCCTGTGGATT 60.066 52.381 0.00 0.00 43.97 3.01
5679 6027 2.625737 CACTAGCACTCCTGTGGATTG 58.374 52.381 0.00 0.37 43.97 2.67
5680 6028 2.234661 CACTAGCACTCCTGTGGATTGA 59.765 50.000 7.93 0.00 43.97 2.57
5681 6029 2.906389 ACTAGCACTCCTGTGGATTGAA 59.094 45.455 7.93 0.00 43.97 2.69
5682 6030 2.191128 AGCACTCCTGTGGATTGAAC 57.809 50.000 7.93 0.00 43.97 3.18
5683 6031 0.798776 GCACTCCTGTGGATTGAACG 59.201 55.000 7.93 0.00 43.97 3.95
5684 6032 1.608025 GCACTCCTGTGGATTGAACGA 60.608 52.381 7.93 0.00 43.97 3.85
5685 6033 2.341257 CACTCCTGTGGATTGAACGAG 58.659 52.381 0.00 0.00 40.33 4.18
5686 6034 1.971357 ACTCCTGTGGATTGAACGAGT 59.029 47.619 0.00 0.00 0.00 4.18
5687 6035 2.368875 ACTCCTGTGGATTGAACGAGTT 59.631 45.455 0.00 0.00 0.00 3.01
5688 6036 2.738846 CTCCTGTGGATTGAACGAGTTG 59.261 50.000 0.00 0.00 0.00 3.16
5689 6037 2.104111 TCCTGTGGATTGAACGAGTTGT 59.896 45.455 0.00 0.00 0.00 3.32
5690 6038 2.224079 CCTGTGGATTGAACGAGTTGTG 59.776 50.000 0.00 0.00 0.00 3.33
5691 6039 2.872245 CTGTGGATTGAACGAGTTGTGT 59.128 45.455 0.00 0.00 0.00 3.72
5692 6040 3.275143 TGTGGATTGAACGAGTTGTGTT 58.725 40.909 0.00 0.00 0.00 3.32
5693 6041 3.064682 TGTGGATTGAACGAGTTGTGTTG 59.935 43.478 0.00 0.00 0.00 3.33
5694 6042 3.311322 GTGGATTGAACGAGTTGTGTTGA 59.689 43.478 0.00 0.00 0.00 3.18
5695 6043 3.559655 TGGATTGAACGAGTTGTGTTGAG 59.440 43.478 0.00 0.00 0.00 3.02
5696 6044 3.058914 GGATTGAACGAGTTGTGTTGAGG 60.059 47.826 0.00 0.00 0.00 3.86
5697 6045 1.295792 TGAACGAGTTGTGTTGAGGC 58.704 50.000 0.00 0.00 0.00 4.70
5698 6046 0.586802 GAACGAGTTGTGTTGAGGCC 59.413 55.000 0.00 0.00 0.00 5.19
5699 6047 0.107410 AACGAGTTGTGTTGAGGCCA 60.107 50.000 5.01 0.00 0.00 5.36
5700 6048 0.107410 ACGAGTTGTGTTGAGGCCAA 60.107 50.000 5.01 0.00 0.00 4.52
5701 6049 0.588252 CGAGTTGTGTTGAGGCCAAG 59.412 55.000 5.01 0.00 32.06 3.61
5702 6050 1.810031 CGAGTTGTGTTGAGGCCAAGA 60.810 52.381 5.01 0.00 32.06 3.02
5703 6051 2.508526 GAGTTGTGTTGAGGCCAAGAT 58.491 47.619 5.01 0.00 32.06 2.40
5704 6052 2.227388 GAGTTGTGTTGAGGCCAAGATG 59.773 50.000 5.01 0.00 32.06 2.90
5705 6053 2.158623 AGTTGTGTTGAGGCCAAGATGA 60.159 45.455 5.01 0.00 32.06 2.92
5706 6054 2.622942 GTTGTGTTGAGGCCAAGATGAA 59.377 45.455 5.01 0.00 32.06 2.57
5707 6055 3.159213 TGTGTTGAGGCCAAGATGAAT 57.841 42.857 5.01 0.00 32.06 2.57
5708 6056 2.821378 TGTGTTGAGGCCAAGATGAATG 59.179 45.455 5.01 0.00 32.06 2.67
5709 6057 2.165030 GTGTTGAGGCCAAGATGAATGG 59.835 50.000 5.01 0.00 41.08 3.16
5710 6058 2.041485 TGTTGAGGCCAAGATGAATGGA 59.959 45.455 5.01 0.00 40.56 3.41
5711 6059 2.686915 GTTGAGGCCAAGATGAATGGAG 59.313 50.000 5.01 0.00 40.56 3.86
5712 6060 1.316651 GAGGCCAAGATGAATGGAGC 58.683 55.000 5.01 0.00 40.56 4.70
5713 6061 0.924823 AGGCCAAGATGAATGGAGCT 59.075 50.000 5.01 0.00 40.56 4.09
5714 6062 1.133853 AGGCCAAGATGAATGGAGCTC 60.134 52.381 5.01 4.71 40.56 4.09
5715 6063 0.942962 GCCAAGATGAATGGAGCTCG 59.057 55.000 7.83 0.00 40.56 5.03
5716 6064 1.745141 GCCAAGATGAATGGAGCTCGT 60.745 52.381 7.83 0.00 40.56 4.18
5717 6065 2.208431 CCAAGATGAATGGAGCTCGTC 58.792 52.381 7.83 5.71 40.56 4.20
5718 6066 2.158986 CCAAGATGAATGGAGCTCGTCT 60.159 50.000 7.83 0.00 40.21 4.18
5730 6078 4.034742 TGGAGCTCGTCTTTGTTAACAAAC 59.965 41.667 26.05 18.42 40.55 2.93
5757 6105 6.855836 TCTGAACAATTGCCATGAAATACTC 58.144 36.000 5.05 0.00 0.00 2.59
5761 6109 6.594788 ACAATTGCCATGAAATACTCACTT 57.405 33.333 5.05 0.00 36.69 3.16
5775 6123 7.458409 AATACTCACTTTGATCACTTGCAAT 57.542 32.000 0.00 0.00 0.00 3.56
5786 6134 4.299586 TCACTTGCAATCCCTTCATGTA 57.700 40.909 0.00 0.00 0.00 2.29
5831 6254 4.299155 AGTGACACAGTTCATAACAGACG 58.701 43.478 8.59 0.00 0.00 4.18
5891 6316 6.210984 GGTTCTATCATATACTCCCTCCGTTT 59.789 42.308 0.00 0.00 0.00 3.60
5895 6320 8.388589 TCTATCATATACTCCCTCCGTTTCTAA 58.611 37.037 0.00 0.00 0.00 2.10
5934 6397 9.612066 AAAGATTTCAACCAGAAGCAAAATAAA 57.388 25.926 0.00 0.00 37.57 1.40
5936 6399 9.211485 AGATTTCAACCAGAAGCAAAATAAATG 57.789 29.630 0.00 0.00 37.57 2.32
6044 6507 2.032981 CTCGGGCACAAAAGCACTT 58.967 52.632 0.00 0.00 35.21 3.16
6069 6532 2.430694 TCAGTGGACACAAGGATATCCG 59.569 50.000 16.21 5.62 42.08 4.18
6134 6622 6.633325 TTTGATTTCTTCTCCTCCATCTCT 57.367 37.500 0.00 0.00 0.00 3.10
6136 6624 6.232581 TGATTTCTTCTCCTCCATCTCTTC 57.767 41.667 0.00 0.00 0.00 2.87
6137 6625 5.963253 TGATTTCTTCTCCTCCATCTCTTCT 59.037 40.000 0.00 0.00 0.00 2.85
6138 6626 7.128751 TGATTTCTTCTCCTCCATCTCTTCTA 58.871 38.462 0.00 0.00 0.00 2.10
6140 6628 7.595819 TTTCTTCTCCTCCATCTCTTCTATC 57.404 40.000 0.00 0.00 0.00 2.08
6142 6630 6.542821 TCTTCTCCTCCATCTCTTCTATCTC 58.457 44.000 0.00 0.00 0.00 2.75
6184 6687 4.814234 CCACGTCTTATTGGCTTAGCAATA 59.186 41.667 6.53 5.86 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.432051 CTAGTTGAGGCTCCGGCGG 62.432 68.421 22.51 22.51 39.81 6.13
10 11 2.105128 CTAGTTGAGGCTCCGGCG 59.895 66.667 12.86 0.00 39.81 6.46
11 12 2.202946 GCTAGTTGAGGCTCCGGC 60.203 66.667 12.86 5.38 37.82 6.13
12 13 2.105128 CGCTAGTTGAGGCTCCGG 59.895 66.667 12.86 0.00 0.00 5.14
13 14 1.725557 TAGCGCTAGTTGAGGCTCCG 61.726 60.000 14.45 8.12 34.62 4.63
14 15 0.031449 CTAGCGCTAGTTGAGGCTCC 59.969 60.000 31.93 0.00 34.62 4.70
15 16 0.031449 CCTAGCGCTAGTTGAGGCTC 59.969 60.000 35.61 7.79 34.62 4.70
16 17 0.684805 ACCTAGCGCTAGTTGAGGCT 60.685 55.000 35.61 15.58 36.20 4.58
17 18 0.175989 AACCTAGCGCTAGTTGAGGC 59.824 55.000 35.61 0.00 0.00 4.70
18 19 2.034812 CCTAACCTAGCGCTAGTTGAGG 59.965 54.545 35.61 30.96 0.00 3.86
19 20 2.034812 CCCTAACCTAGCGCTAGTTGAG 59.965 54.545 35.61 26.90 0.00 3.02
20 21 2.029623 CCCTAACCTAGCGCTAGTTGA 58.970 52.381 35.61 19.84 0.00 3.18
21 22 2.029623 TCCCTAACCTAGCGCTAGTTG 58.970 52.381 35.61 25.92 0.00 3.16
22 23 2.449137 TCCCTAACCTAGCGCTAGTT 57.551 50.000 35.61 29.66 0.00 2.24
23 24 2.449137 TTCCCTAACCTAGCGCTAGT 57.551 50.000 35.61 24.08 0.00 2.57
24 25 2.036089 CCTTTCCCTAACCTAGCGCTAG 59.964 54.545 33.03 33.03 0.00 3.42
25 26 2.037144 CCTTTCCCTAACCTAGCGCTA 58.963 52.381 17.75 17.75 0.00 4.26
26 27 0.831307 CCTTTCCCTAACCTAGCGCT 59.169 55.000 17.26 17.26 0.00 5.92
27 28 0.179054 CCCTTTCCCTAACCTAGCGC 60.179 60.000 0.00 0.00 0.00 5.92
28 29 0.468648 CCCCTTTCCCTAACCTAGCG 59.531 60.000 0.00 0.00 0.00 4.26
29 30 1.889174 TCCCCTTTCCCTAACCTAGC 58.111 55.000 0.00 0.00 0.00 3.42
30 31 3.202373 CCTTTCCCCTTTCCCTAACCTAG 59.798 52.174 0.00 0.00 0.00 3.02
31 32 3.195459 CCTTTCCCCTTTCCCTAACCTA 58.805 50.000 0.00 0.00 0.00 3.08
32 33 2.000803 CCTTTCCCCTTTCCCTAACCT 58.999 52.381 0.00 0.00 0.00 3.50
33 34 1.006758 CCCTTTCCCCTTTCCCTAACC 59.993 57.143 0.00 0.00 0.00 2.85
34 35 1.006758 CCCCTTTCCCCTTTCCCTAAC 59.993 57.143 0.00 0.00 0.00 2.34
35 36 1.131670 TCCCCTTTCCCCTTTCCCTAA 60.132 52.381 0.00 0.00 0.00 2.69
36 37 0.503805 TCCCCTTTCCCCTTTCCCTA 59.496 55.000 0.00 0.00 0.00 3.53
37 38 0.178770 ATCCCCTTTCCCCTTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
38 39 0.716591 AATCCCCTTTCCCCTTTCCC 59.283 55.000 0.00 0.00 0.00 3.97
39 40 1.685180 CGAATCCCCTTTCCCCTTTCC 60.685 57.143 0.00 0.00 0.00 3.13
40 41 1.685180 CCGAATCCCCTTTCCCCTTTC 60.685 57.143 0.00 0.00 0.00 2.62
41 42 0.335019 CCGAATCCCCTTTCCCCTTT 59.665 55.000 0.00 0.00 0.00 3.11
42 43 0.849540 ACCGAATCCCCTTTCCCCTT 60.850 55.000 0.00 0.00 0.00 3.95
43 44 1.230182 ACCGAATCCCCTTTCCCCT 60.230 57.895 0.00 0.00 0.00 4.79
44 45 1.226542 GACCGAATCCCCTTTCCCC 59.773 63.158 0.00 0.00 0.00 4.81
45 46 0.107165 CAGACCGAATCCCCTTTCCC 60.107 60.000 0.00 0.00 0.00 3.97
46 47 0.748367 GCAGACCGAATCCCCTTTCC 60.748 60.000 0.00 0.00 0.00 3.13
47 48 0.253327 AGCAGACCGAATCCCCTTTC 59.747 55.000 0.00 0.00 0.00 2.62
48 49 1.209747 GTAGCAGACCGAATCCCCTTT 59.790 52.381 0.00 0.00 0.00 3.11
49 50 0.831307 GTAGCAGACCGAATCCCCTT 59.169 55.000 0.00 0.00 0.00 3.95
50 51 0.032017 AGTAGCAGACCGAATCCCCT 60.032 55.000 0.00 0.00 0.00 4.79
51 52 0.389757 GAGTAGCAGACCGAATCCCC 59.610 60.000 0.00 0.00 0.00 4.81
52 53 0.030908 CGAGTAGCAGACCGAATCCC 59.969 60.000 0.00 0.00 0.00 3.85
53 54 3.553597 CGAGTAGCAGACCGAATCC 57.446 57.895 0.00 0.00 0.00 3.01
69 70 4.400109 GTCTGGTCTCGTGCGCGA 62.400 66.667 22.60 22.60 45.79 5.87
70 71 4.700365 TGTCTGGTCTCGTGCGCG 62.700 66.667 14.79 14.79 39.92 6.86
71 72 3.106407 GTGTCTGGTCTCGTGCGC 61.106 66.667 0.00 0.00 0.00 6.09
72 73 2.430921 GGTGTCTGGTCTCGTGCG 60.431 66.667 0.00 0.00 0.00 5.34
73 74 2.048127 GGGTGTCTGGTCTCGTGC 60.048 66.667 0.00 0.00 0.00 5.34
74 75 2.258591 CGGGTGTCTGGTCTCGTG 59.741 66.667 0.00 0.00 0.00 4.35
75 76 2.989824 CCGGGTGTCTGGTCTCGT 60.990 66.667 0.00 0.00 34.69 4.18
81 82 4.436998 GAGCGACCGGGTGTCTGG 62.437 72.222 3.30 0.00 42.13 3.86
82 83 4.436998 GGAGCGACCGGGTGTCTG 62.437 72.222 3.30 0.00 42.13 3.51
83 84 4.680537 AGGAGCGACCGGGTGTCT 62.681 66.667 3.30 0.04 44.74 3.41
84 85 4.436998 CAGGAGCGACCGGGTGTC 62.437 72.222 3.30 0.00 44.74 3.67
86 87 4.436998 GACAGGAGCGACCGGGTG 62.437 72.222 3.30 0.00 44.74 4.61
87 88 4.680537 AGACAGGAGCGACCGGGT 62.681 66.667 6.32 0.00 44.74 5.28
88 89 4.135153 CAGACAGGAGCGACCGGG 62.135 72.222 6.32 0.00 44.74 5.73
89 90 4.135153 CCAGACAGGAGCGACCGG 62.135 72.222 0.00 0.00 44.74 5.28
90 91 4.803426 GCCAGACAGGAGCGACCG 62.803 72.222 0.00 0.00 44.74 4.79
91 92 3.363844 GAGCCAGACAGGAGCGACC 62.364 68.421 0.00 0.00 41.22 4.79
92 93 2.183046 GAGCCAGACAGGAGCGAC 59.817 66.667 0.00 0.00 41.22 5.19
93 94 3.071206 GGAGCCAGACAGGAGCGA 61.071 66.667 0.00 0.00 41.22 4.93
94 95 4.154347 GGGAGCCAGACAGGAGCG 62.154 72.222 0.00 0.00 41.22 5.03
95 96 3.791586 GGGGAGCCAGACAGGAGC 61.792 72.222 0.00 0.00 41.22 4.70
96 97 3.465403 CGGGGAGCCAGACAGGAG 61.465 72.222 0.00 0.00 41.22 3.69
115 116 4.724602 ACACAGCGACGCAGCGAT 62.725 61.111 24.65 5.58 43.00 4.58
116 117 4.942481 AACACAGCGACGCAGCGA 62.942 61.111 24.65 0.00 43.00 4.93
117 118 4.000557 AAACACAGCGACGCAGCG 62.001 61.111 23.70 14.82 43.00 5.18
118 119 2.425773 CAAACACAGCGACGCAGC 60.426 61.111 23.70 0.00 37.41 5.25
119 120 2.249309 CCAAACACAGCGACGCAG 59.751 61.111 23.70 17.35 0.00 5.18
120 121 3.276091 CCCAAACACAGCGACGCA 61.276 61.111 23.70 0.00 0.00 5.24
121 122 2.830285 AACCCAAACACAGCGACGC 61.830 57.895 13.03 13.03 0.00 5.19
122 123 1.010125 CAACCCAAACACAGCGACG 60.010 57.895 0.00 0.00 0.00 5.12
123 124 1.358759 CCAACCCAAACACAGCGAC 59.641 57.895 0.00 0.00 0.00 5.19
124 125 1.826054 CCCAACCCAAACACAGCGA 60.826 57.895 0.00 0.00 0.00 4.93
125 126 2.727544 CCCAACCCAAACACAGCG 59.272 61.111 0.00 0.00 0.00 5.18
126 127 2.421314 GCCCAACCCAAACACAGC 59.579 61.111 0.00 0.00 0.00 4.40
127 128 1.333636 TTGGCCCAACCCAAACACAG 61.334 55.000 0.00 0.00 41.69 3.66
128 129 1.306141 TTGGCCCAACCCAAACACA 60.306 52.632 0.00 0.00 41.69 3.72
129 130 1.334384 ACTTGGCCCAACCCAAACAC 61.334 55.000 0.00 0.00 43.83 3.32
130 131 1.002274 ACTTGGCCCAACCCAAACA 59.998 52.632 0.00 0.00 43.83 2.83
131 132 1.045911 TGACTTGGCCCAACCCAAAC 61.046 55.000 0.00 0.00 43.83 2.93
132 133 1.045911 GTGACTTGGCCCAACCCAAA 61.046 55.000 0.00 0.00 43.83 3.28
133 134 1.456705 GTGACTTGGCCCAACCCAA 60.457 57.895 0.00 0.00 42.37 4.12
134 135 2.197324 GTGACTTGGCCCAACCCA 59.803 61.111 0.00 0.00 37.83 4.51
135 136 1.603739 GAGTGACTTGGCCCAACCC 60.604 63.158 0.00 0.00 37.83 4.11
136 137 1.603739 GGAGTGACTTGGCCCAACC 60.604 63.158 0.00 0.00 39.84 3.77
137 138 1.150536 TGGAGTGACTTGGCCCAAC 59.849 57.895 0.00 0.00 0.00 3.77
138 139 1.150536 GTGGAGTGACTTGGCCCAA 59.849 57.895 0.00 0.00 0.00 4.12
139 140 2.075566 TGTGGAGTGACTTGGCCCA 61.076 57.895 0.00 0.00 0.00 5.36
140 141 1.600916 GTGTGGAGTGACTTGGCCC 60.601 63.158 0.00 0.00 0.00 5.80
141 142 1.600916 GGTGTGGAGTGACTTGGCC 60.601 63.158 0.00 0.00 0.00 5.36
142 143 1.961277 CGGTGTGGAGTGACTTGGC 60.961 63.158 0.00 0.00 0.00 4.52
143 144 0.677288 TACGGTGTGGAGTGACTTGG 59.323 55.000 0.00 0.00 0.00 3.61
144 145 2.743636 ATACGGTGTGGAGTGACTTG 57.256 50.000 0.00 0.00 0.00 3.16
145 146 4.464951 TCAATATACGGTGTGGAGTGACTT 59.535 41.667 0.00 0.00 0.00 3.01
146 147 4.021229 TCAATATACGGTGTGGAGTGACT 58.979 43.478 0.00 0.00 0.00 3.41
147 148 4.380841 TCAATATACGGTGTGGAGTGAC 57.619 45.455 0.00 0.00 0.00 3.67
148 149 6.911250 ATATCAATATACGGTGTGGAGTGA 57.089 37.500 0.00 0.00 0.00 3.41
149 150 8.251026 ACATATATCAATATACGGTGTGGAGTG 58.749 37.037 0.00 0.00 0.00 3.51
150 151 8.362464 ACATATATCAATATACGGTGTGGAGT 57.638 34.615 0.00 0.00 0.00 3.85
151 152 9.952188 CTACATATATCAATATACGGTGTGGAG 57.048 37.037 0.00 0.00 0.00 3.86
152 153 9.470399 ACTACATATATCAATATACGGTGTGGA 57.530 33.333 10.25 0.00 0.00 4.02
186 187 8.401709 GGAATACCAAAGAATTTTGTGCAAAAA 58.598 29.630 13.13 0.00 41.68 1.94
187 188 7.554118 TGGAATACCAAAGAATTTTGTGCAAAA 59.446 29.630 11.77 11.77 43.91 2.44
188 189 7.050377 TGGAATACCAAAGAATTTTGTGCAAA 58.950 30.769 0.00 0.00 43.91 3.68
189 190 6.586344 TGGAATACCAAAGAATTTTGTGCAA 58.414 32.000 0.00 0.00 43.91 4.08
190 191 6.166984 TGGAATACCAAAGAATTTTGTGCA 57.833 33.333 0.00 0.00 43.91 4.57
191 192 5.639082 CCTGGAATACCAAAGAATTTTGTGC 59.361 40.000 0.00 0.00 46.32 4.57
192 193 6.014669 TCCCTGGAATACCAAAGAATTTTGTG 60.015 38.462 0.00 0.00 46.32 3.33
193 194 6.081356 TCCCTGGAATACCAAAGAATTTTGT 58.919 36.000 0.00 0.00 46.32 2.83
194 195 6.603940 TCCCTGGAATACCAAAGAATTTTG 57.396 37.500 0.00 0.00 46.32 2.44
195 196 7.813087 ATTCCCTGGAATACCAAAGAATTTT 57.187 32.000 9.67 0.00 46.32 1.82
215 216 1.709115 GGGGGTATTCCTGGGTATTCC 59.291 57.143 0.00 0.00 35.33 3.01
216 217 2.375509 CTGGGGGTATTCCTGGGTATTC 59.624 54.545 0.00 0.00 35.33 1.75
217 218 2.428901 CTGGGGGTATTCCTGGGTATT 58.571 52.381 0.00 0.00 35.33 1.89
218 219 2.051039 GCTGGGGGTATTCCTGGGTAT 61.051 57.143 0.00 0.00 35.33 2.73
219 220 0.696485 GCTGGGGGTATTCCTGGGTA 60.696 60.000 0.00 0.00 35.33 3.69
220 221 2.006991 GCTGGGGGTATTCCTGGGT 61.007 63.158 0.00 0.00 35.33 4.51
221 222 1.697754 AGCTGGGGGTATTCCTGGG 60.698 63.158 0.00 0.00 35.33 4.45
222 223 1.709994 GGAGCTGGGGGTATTCCTGG 61.710 65.000 0.00 0.00 35.33 4.45
223 224 1.839894 GGAGCTGGGGGTATTCCTG 59.160 63.158 0.00 0.00 35.33 3.86
224 225 1.766461 CGGAGCTGGGGGTATTCCT 60.766 63.158 0.00 0.00 35.33 3.36
225 226 2.829592 CGGAGCTGGGGGTATTCC 59.170 66.667 0.00 0.00 0.00 3.01
238 239 2.124193 TGGGATGCAATGGCGGAG 60.124 61.111 0.00 0.00 45.35 4.63
239 240 2.440065 GTGGGATGCAATGGCGGA 60.440 61.111 0.00 0.00 45.35 5.54
240 241 3.530260 GGTGGGATGCAATGGCGG 61.530 66.667 0.00 0.00 45.35 6.13
241 242 2.755064 TGGTGGGATGCAATGGCG 60.755 61.111 0.00 0.00 45.35 5.69
242 243 1.952102 CTGTGGTGGGATGCAATGGC 61.952 60.000 0.00 0.00 41.68 4.40
243 244 0.612732 ACTGTGGTGGGATGCAATGG 60.613 55.000 0.00 0.00 0.00 3.16
244 245 0.813184 GACTGTGGTGGGATGCAATG 59.187 55.000 0.00 0.00 0.00 2.82
245 246 0.677731 CGACTGTGGTGGGATGCAAT 60.678 55.000 0.00 0.00 0.00 3.56
246 247 1.302431 CGACTGTGGTGGGATGCAA 60.302 57.895 0.00 0.00 0.00 4.08
247 248 2.347114 CGACTGTGGTGGGATGCA 59.653 61.111 0.00 0.00 0.00 3.96
248 249 2.436646 CCGACTGTGGTGGGATGC 60.437 66.667 0.00 0.00 42.84 3.91
274 275 0.036388 TGGCGAGGTTCTGTTCATCC 60.036 55.000 0.00 0.00 0.00 3.51
281 282 2.432628 GACGGTGGCGAGGTTCTG 60.433 66.667 0.00 0.00 0.00 3.02
296 297 3.781770 CTCTCTCGCGGGGCATGAC 62.782 68.421 5.94 0.00 0.00 3.06
297 298 3.531207 CTCTCTCGCGGGGCATGA 61.531 66.667 5.94 0.00 0.00 3.07
326 327 2.450243 GGTCACTCCCCTCCCTCA 59.550 66.667 0.00 0.00 0.00 3.86
344 345 4.516195 GAACCCGAGCGCTCCCTC 62.516 72.222 30.66 17.50 0.00 4.30
376 377 2.098831 GCGTTAACGGCCTCTGTCC 61.099 63.158 27.82 5.50 40.23 4.02
385 386 2.709999 GACGACACGGCGTTAACGG 61.710 63.158 27.82 15.39 45.72 4.44
418 419 4.537135 TTTGACATGACTACTCCCTCAC 57.463 45.455 0.00 0.00 0.00 3.51
426 427 3.493129 TGAGCACGTTTTGACATGACTAC 59.507 43.478 0.00 0.00 0.00 2.73
436 437 4.787598 AGCTATTTTCTGAGCACGTTTTG 58.212 39.130 0.00 0.00 41.36 2.44
485 486 3.692998 GCATTTTGCACCGAATCGA 57.307 47.368 3.36 0.00 44.26 3.59
540 542 1.833860 AAAAATGCACACAACCGTCG 58.166 45.000 0.00 0.00 0.00 5.12
559 561 2.602878 GGTCTCGTCGCATTTGAAGTA 58.397 47.619 0.00 0.00 0.00 2.24
560 562 1.429463 GGTCTCGTCGCATTTGAAGT 58.571 50.000 0.00 0.00 0.00 3.01
561 563 0.366871 CGGTCTCGTCGCATTTGAAG 59.633 55.000 0.00 0.00 0.00 3.02
563 565 4.162640 CGGTCTCGTCGCATTTGA 57.837 55.556 0.00 0.00 0.00 2.69
644 649 4.388499 GTTTGGGGCTCCGCGAGA 62.388 66.667 8.23 1.68 35.24 4.04
656 664 3.650183 CGACCATTCGTTCGTTTGG 57.350 52.632 11.96 11.96 40.61 3.28
810 824 1.216930 AGAGGGAGGAGTCTAGAAGGC 59.783 57.143 0.00 0.00 0.00 4.35
816 830 0.464870 CGACGAGAGGGAGGAGTCTA 59.535 60.000 0.00 0.00 0.00 2.59
820 834 2.174969 CGACGACGAGAGGGAGGAG 61.175 68.421 0.00 0.00 42.66 3.69
1225 1284 0.896940 TCGGCCTGGTACTCGAACTT 60.897 55.000 0.00 0.00 0.00 2.66
1253 1312 4.672251 CAAGGATTGGAGCCCCTG 57.328 61.111 0.00 0.00 43.94 4.45
1350 1417 1.303317 AACCACGAATCCTGCCACC 60.303 57.895 0.00 0.00 0.00 4.61
1477 1557 1.097547 CCATCAAGCGGCTAACCTGG 61.098 60.000 1.35 4.69 0.00 4.45
1602 1682 9.270640 GTCAGATAGTCAGCAATGATTTTCTAT 57.729 33.333 0.00 0.00 0.00 1.98
1603 1683 7.712639 GGTCAGATAGTCAGCAATGATTTTCTA 59.287 37.037 0.00 0.00 0.00 2.10
1604 1684 6.541641 GGTCAGATAGTCAGCAATGATTTTCT 59.458 38.462 0.00 0.00 0.00 2.52
1605 1685 6.541641 AGGTCAGATAGTCAGCAATGATTTTC 59.458 38.462 0.00 0.00 0.00 2.29
1606 1686 6.318144 CAGGTCAGATAGTCAGCAATGATTTT 59.682 38.462 0.00 0.00 0.00 1.82
1607 1687 5.821470 CAGGTCAGATAGTCAGCAATGATTT 59.179 40.000 0.00 0.00 0.00 2.17
1612 1692 3.378512 TCCAGGTCAGATAGTCAGCAAT 58.621 45.455 0.00 0.00 0.00 3.56
1613 1693 2.820178 TCCAGGTCAGATAGTCAGCAA 58.180 47.619 0.00 0.00 0.00 3.91
1634 1714 9.646427 GCATTACTGGGTGAAAACATAAATTTA 57.354 29.630 0.00 0.00 0.00 1.40
1706 1786 2.821366 CCATCAGCCAGCACGGAC 60.821 66.667 0.00 0.00 36.56 4.79
1800 1880 5.014858 AGAATTGATGACTGAACTGCCAAT 58.985 37.500 0.00 0.00 0.00 3.16
1824 1904 6.265422 TCTGAGACTGAATTGTGACTTCTGTA 59.735 38.462 0.00 0.00 35.67 2.74
1826 1906 5.404968 GTCTGAGACTGAATTGTGACTTCTG 59.595 44.000 5.12 0.00 0.00 3.02
1852 1932 9.912634 ACTATCACTGTAAAATCCAAAACAATG 57.087 29.630 0.00 0.00 0.00 2.82
2181 2266 7.615365 ACAACCACCATACAGAATTTCATGTAT 59.385 33.333 12.10 12.10 42.03 2.29
2186 2271 5.508825 GCAACAACCACCATACAGAATTTCA 60.509 40.000 0.00 0.00 0.00 2.69
2187 2272 4.923281 GCAACAACCACCATACAGAATTTC 59.077 41.667 0.00 0.00 0.00 2.17
2188 2273 4.588528 AGCAACAACCACCATACAGAATTT 59.411 37.500 0.00 0.00 0.00 1.82
2189 2274 4.022068 CAGCAACAACCACCATACAGAATT 60.022 41.667 0.00 0.00 0.00 2.17
2190 2275 3.507233 CAGCAACAACCACCATACAGAAT 59.493 43.478 0.00 0.00 0.00 2.40
2191 2276 2.884012 CAGCAACAACCACCATACAGAA 59.116 45.455 0.00 0.00 0.00 3.02
2192 2277 2.503331 CAGCAACAACCACCATACAGA 58.497 47.619 0.00 0.00 0.00 3.41
2193 2278 1.068333 GCAGCAACAACCACCATACAG 60.068 52.381 0.00 0.00 0.00 2.74
2194 2279 0.958091 GCAGCAACAACCACCATACA 59.042 50.000 0.00 0.00 0.00 2.29
2195 2280 0.958091 TGCAGCAACAACCACCATAC 59.042 50.000 0.00 0.00 0.00 2.39
2196 2281 1.545136 CATGCAGCAACAACCACCATA 59.455 47.619 0.00 0.00 0.00 2.74
2197 2282 0.319083 CATGCAGCAACAACCACCAT 59.681 50.000 0.00 0.00 0.00 3.55
2198 2283 1.042003 ACATGCAGCAACAACCACCA 61.042 50.000 0.00 0.00 0.00 4.17
2199 2284 0.104671 AACATGCAGCAACAACCACC 59.895 50.000 0.00 0.00 0.00 4.61
2200 2285 1.938625 AAACATGCAGCAACAACCAC 58.061 45.000 0.00 0.00 0.00 4.16
2201 2286 2.093816 TCAAAACATGCAGCAACAACCA 60.094 40.909 0.00 0.00 0.00 3.67
2202 2287 2.540931 CTCAAAACATGCAGCAACAACC 59.459 45.455 0.00 0.00 0.00 3.77
2203 2288 2.540931 CCTCAAAACATGCAGCAACAAC 59.459 45.455 0.00 0.00 0.00 3.32
2204 2289 2.429971 TCCTCAAAACATGCAGCAACAA 59.570 40.909 0.00 0.00 0.00 2.83
2492 2578 8.068892 AGTTAAGAGTCATGTTAGGACTTAGG 57.931 38.462 0.00 0.00 45.21 2.69
2826 2927 2.872245 AGTTTGATCACAGTGACAACCG 59.128 45.455 5.05 0.00 0.00 4.44
3145 3373 3.226346 TCATTGTACTCGGTTTCCTCG 57.774 47.619 0.00 0.00 0.00 4.63
3325 3554 3.791320 TCCTGGGATGTAGAGAACACTT 58.209 45.455 0.00 0.00 42.09 3.16
3519 3748 1.746220 GCGGCCCATTACAACATTGTA 59.254 47.619 0.00 0.22 42.35 2.41
3687 3916 5.065988 ACACACTAAAGTAAACAACTGCAGG 59.934 40.000 19.93 3.21 38.88 4.85
3708 3937 7.361799 GGTGATAATTAGTTCCAAGAACCACAC 60.362 40.741 3.91 0.00 0.00 3.82
3849 4078 5.696270 CCTAATGAAACAAAAGCTTGGGAAC 59.304 40.000 0.00 0.00 36.82 3.62
3860 4089 6.707440 TCAAGACAAGCCTAATGAAACAAA 57.293 33.333 0.00 0.00 0.00 2.83
4039 4268 4.867047 GGCATATTCTCCACATACTGATCG 59.133 45.833 0.00 0.00 0.00 3.69
4072 4301 8.605947 TCTGTGGCAATATAATAGATAGCCTTT 58.394 33.333 0.00 0.00 41.12 3.11
4093 4322 4.446994 TGCACTCTGAAGACTATCTGTG 57.553 45.455 0.00 0.00 0.00 3.66
4126 4355 4.147321 TCTGAAGCAGCTTTTCCAAGAAT 58.853 39.130 9.62 0.00 30.57 2.40
4264 4493 4.588951 TGAATAGCTACCTCATCAATCGGT 59.411 41.667 0.00 0.00 34.86 4.69
4393 4636 7.596248 CCTGAAACAGCCAATATATGTTATTGC 59.404 37.037 0.00 0.00 36.18 3.56
4415 4658 0.106015 TCCTCATCCTCATCGCCTGA 60.106 55.000 0.00 0.00 0.00 3.86
4522 4765 1.606737 GGTGAAGAGCTGAGTCGCTTT 60.607 52.381 10.15 3.24 41.08 3.51
4612 4855 4.566360 CGCTTATTTTGCCAAATTGGGTAG 59.434 41.667 14.59 0.00 38.19 3.18
4625 4868 3.796178 ACAACAACTGCACGCTTATTTTG 59.204 39.130 0.00 0.00 0.00 2.44
4656 4899 7.994425 TTCATAAGCCTATCAAGTTGAACAA 57.006 32.000 10.14 0.00 0.00 2.83
4657 4900 7.994425 TTTCATAAGCCTATCAAGTTGAACA 57.006 32.000 10.14 0.00 0.00 3.18
4798 5048 8.532977 AACAACAACAAATAGGTATGAATTGC 57.467 30.769 0.00 0.00 0.00 3.56
4802 5052 9.906660 GATTGAACAACAACAAATAGGTATGAA 57.093 29.630 0.00 0.00 41.52 2.57
4850 5156 2.517959 TCTTGCAAGCAGCCTATTGTT 58.482 42.857 21.99 0.00 44.83 2.83
4851 5157 2.205022 TCTTGCAAGCAGCCTATTGT 57.795 45.000 21.99 0.00 44.83 2.71
4852 5158 2.730090 CGTTCTTGCAAGCAGCCTATTG 60.730 50.000 21.99 0.00 44.83 1.90
4954 5263 5.577100 ACGGGAGCATATAGGTATCTTGTA 58.423 41.667 0.00 0.00 0.00 2.41
5362 5676 5.925969 CCTTTGGCGATAACAAACAAGATTT 59.074 36.000 0.00 0.00 34.43 2.17
5382 5696 7.597288 AAGTCACCTACAAAATTTAGCCTTT 57.403 32.000 0.00 0.00 0.00 3.11
5443 5763 8.682710 AGGTAAAATGCATGAAACATACGTATT 58.317 29.630 5.03 0.00 0.00 1.89
5498 5818 9.705290 TTTGTATACACTACGCATCATTGATAT 57.295 29.630 4.68 0.00 0.00 1.63
5541 5862 2.502947 ACACAAGATAGAGAGCATGGCA 59.497 45.455 0.00 0.00 0.00 4.92
5543 5864 4.397481 TGACACAAGATAGAGAGCATGG 57.603 45.455 0.00 0.00 0.00 3.66
5545 5866 6.413052 ACAATTGACACAAGATAGAGAGCAT 58.587 36.000 13.59 0.00 0.00 3.79
5641 5989 2.739913 AGTGCGCACGTACAACAAATAT 59.260 40.909 32.94 9.59 36.20 1.28
5660 6008 2.540383 TCAATCCACAGGAGTGCTAGT 58.460 47.619 8.51 0.00 45.92 2.57
5677 6025 1.668751 GCCTCAACACAACTCGTTCAA 59.331 47.619 0.00 0.00 0.00 2.69
5678 6026 1.295792 GCCTCAACACAACTCGTTCA 58.704 50.000 0.00 0.00 0.00 3.18
5679 6027 0.586802 GGCCTCAACACAACTCGTTC 59.413 55.000 0.00 0.00 0.00 3.95
5680 6028 0.107410 TGGCCTCAACACAACTCGTT 60.107 50.000 3.32 0.00 0.00 3.85
5681 6029 0.107410 TTGGCCTCAACACAACTCGT 60.107 50.000 3.32 0.00 0.00 4.18
5682 6030 0.588252 CTTGGCCTCAACACAACTCG 59.412 55.000 3.32 0.00 0.00 4.18
5683 6031 1.967319 TCTTGGCCTCAACACAACTC 58.033 50.000 3.32 0.00 0.00 3.01
5684 6032 2.158623 TCATCTTGGCCTCAACACAACT 60.159 45.455 3.32 0.00 0.00 3.16
5685 6033 2.229792 TCATCTTGGCCTCAACACAAC 58.770 47.619 3.32 0.00 0.00 3.32
5686 6034 2.655090 TCATCTTGGCCTCAACACAA 57.345 45.000 3.32 0.00 0.00 3.33
5687 6035 2.655090 TTCATCTTGGCCTCAACACA 57.345 45.000 3.32 0.00 0.00 3.72
5688 6036 2.165030 CCATTCATCTTGGCCTCAACAC 59.835 50.000 3.32 0.00 0.00 3.32
5689 6037 2.041485 TCCATTCATCTTGGCCTCAACA 59.959 45.455 3.32 0.00 34.06 3.33
5690 6038 2.686915 CTCCATTCATCTTGGCCTCAAC 59.313 50.000 3.32 0.00 34.06 3.18
5691 6039 2.947243 GCTCCATTCATCTTGGCCTCAA 60.947 50.000 3.32 0.00 34.06 3.02
5692 6040 1.409241 GCTCCATTCATCTTGGCCTCA 60.409 52.381 3.32 0.00 34.06 3.86
5693 6041 1.133853 AGCTCCATTCATCTTGGCCTC 60.134 52.381 3.32 0.00 34.06 4.70
5694 6042 0.924823 AGCTCCATTCATCTTGGCCT 59.075 50.000 3.32 0.00 34.06 5.19
5695 6043 1.316651 GAGCTCCATTCATCTTGGCC 58.683 55.000 0.87 0.00 34.06 5.36
5696 6044 0.942962 CGAGCTCCATTCATCTTGGC 59.057 55.000 8.47 0.00 34.06 4.52
5697 6045 2.158986 AGACGAGCTCCATTCATCTTGG 60.159 50.000 8.47 0.00 35.45 3.61
5698 6046 3.176552 AGACGAGCTCCATTCATCTTG 57.823 47.619 8.47 0.00 0.00 3.02
5699 6047 3.902881 AAGACGAGCTCCATTCATCTT 57.097 42.857 8.47 5.32 0.00 2.40
5700 6048 3.055530 ACAAAGACGAGCTCCATTCATCT 60.056 43.478 8.47 0.00 0.00 2.90
5701 6049 3.265791 ACAAAGACGAGCTCCATTCATC 58.734 45.455 8.47 0.00 0.00 2.92
5702 6050 3.340814 ACAAAGACGAGCTCCATTCAT 57.659 42.857 8.47 0.00 0.00 2.57
5703 6051 2.839486 ACAAAGACGAGCTCCATTCA 57.161 45.000 8.47 0.00 0.00 2.57
5704 6052 4.451096 TGTTAACAAAGACGAGCTCCATTC 59.549 41.667 8.47 2.21 0.00 2.67
5705 6053 4.385825 TGTTAACAAAGACGAGCTCCATT 58.614 39.130 8.47 0.00 0.00 3.16
5706 6054 4.002906 TGTTAACAAAGACGAGCTCCAT 57.997 40.909 8.47 0.00 0.00 3.41
5707 6055 3.462483 TGTTAACAAAGACGAGCTCCA 57.538 42.857 8.47 0.00 0.00 3.86
5708 6056 4.272748 AGTTTGTTAACAAAGACGAGCTCC 59.727 41.667 29.36 16.34 45.36 4.70
5709 6057 5.405331 AGTTTGTTAACAAAGACGAGCTC 57.595 39.130 29.36 16.94 45.36 4.09
5710 6058 5.813080 AAGTTTGTTAACAAAGACGAGCT 57.187 34.783 29.36 19.83 45.36 4.09
5711 6059 6.194692 CAGAAAGTTTGTTAACAAAGACGAGC 59.805 38.462 29.36 18.17 45.36 5.03
5712 6060 7.461107 TCAGAAAGTTTGTTAACAAAGACGAG 58.539 34.615 29.36 18.68 45.36 4.18
5713 6061 7.367159 TCAGAAAGTTTGTTAACAAAGACGA 57.633 32.000 29.36 18.06 45.36 4.20
5714 6062 7.535940 TGTTCAGAAAGTTTGTTAACAAAGACG 59.464 33.333 29.36 16.46 45.36 4.18
5715 6063 8.736751 TGTTCAGAAAGTTTGTTAACAAAGAC 57.263 30.769 29.36 20.93 45.36 3.01
5716 6064 9.921637 ATTGTTCAGAAAGTTTGTTAACAAAGA 57.078 25.926 29.36 19.99 45.36 2.52
5730 6078 7.816031 AGTATTTCATGGCAATTGTTCAGAAAG 59.184 33.333 7.40 0.00 0.00 2.62
5757 6105 3.508793 AGGGATTGCAAGTGATCAAAGTG 59.491 43.478 4.94 0.00 0.00 3.16
5761 6109 3.765381 TGAAGGGATTGCAAGTGATCAA 58.235 40.909 4.94 0.00 0.00 2.57
5775 6123 3.770388 TGTTGTCCGTATACATGAAGGGA 59.230 43.478 0.00 2.25 0.00 4.20
5786 6134 4.637276 TCTGTCATGTTTGTTGTCCGTAT 58.363 39.130 0.00 0.00 0.00 3.06
5831 6254 6.128063 ACTCAGCTTTAGCATCATCTTTGTTC 60.128 38.462 4.33 0.00 45.16 3.18
5908 6333 9.612066 TTTATTTTGCTTCTGGTTGAAATCTTT 57.388 25.926 0.00 0.00 33.79 2.52
5909 6334 9.783081 ATTTATTTTGCTTCTGGTTGAAATCTT 57.217 25.926 0.00 0.00 33.79 2.40
5910 6335 9.211485 CATTTATTTTGCTTCTGGTTGAAATCT 57.789 29.630 0.00 0.00 33.79 2.40
5914 6339 9.206870 GATTCATTTATTTTGCTTCTGGTTGAA 57.793 29.630 0.00 0.00 0.00 2.69
5915 6340 8.587608 AGATTCATTTATTTTGCTTCTGGTTGA 58.412 29.630 0.00 0.00 0.00 3.18
5916 6341 8.767478 AGATTCATTTATTTTGCTTCTGGTTG 57.233 30.769 0.00 0.00 0.00 3.77
5917 6342 9.860898 GTAGATTCATTTATTTTGCTTCTGGTT 57.139 29.630 0.00 0.00 0.00 3.67
5918 6343 9.023962 TGTAGATTCATTTATTTTGCTTCTGGT 57.976 29.630 0.00 0.00 0.00 4.00
5919 6344 9.294030 GTGTAGATTCATTTATTTTGCTTCTGG 57.706 33.333 0.00 0.00 0.00 3.86
6015 6478 2.967615 GCCCGAGCGCCTAATCAC 60.968 66.667 2.29 0.00 0.00 3.06
6044 6507 0.836606 TCCTTGTGTCCACTGAGCAA 59.163 50.000 0.00 0.00 0.00 3.91
6047 6510 3.491619 CGGATATCCTTGTGTCCACTGAG 60.492 52.174 19.61 0.00 0.00 3.35
6051 6514 1.583054 GCGGATATCCTTGTGTCCAC 58.417 55.000 19.61 0.00 0.00 4.02
6053 6516 0.600255 CGGCGGATATCCTTGTGTCC 60.600 60.000 19.61 9.37 0.00 4.02
6054 6517 0.600255 CCGGCGGATATCCTTGTGTC 60.600 60.000 24.41 4.62 0.00 3.67
6069 6532 2.052782 ATCCACCTTTCAATACCGGC 57.947 50.000 0.00 0.00 0.00 6.13
6123 6611 6.900186 AGTTTTGAGATAGAAGAGATGGAGGA 59.100 38.462 0.00 0.00 0.00 3.71
6134 6622 3.260884 ACCGAGGCAGTTTTGAGATAGAA 59.739 43.478 0.00 0.00 0.00 2.10
6136 6624 3.252974 ACCGAGGCAGTTTTGAGATAG 57.747 47.619 0.00 0.00 0.00 2.08
6137 6625 4.755411 CTTACCGAGGCAGTTTTGAGATA 58.245 43.478 0.00 0.00 0.00 1.98
6138 6626 3.600388 CTTACCGAGGCAGTTTTGAGAT 58.400 45.455 0.00 0.00 0.00 2.75
6140 6628 1.464997 GCTTACCGAGGCAGTTTTGAG 59.535 52.381 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.