Multiple sequence alignment - TraesCS5D01G256500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G256500 chr5D 100.000 3137 0 0 1 3137 362870024 362866888 0.000000e+00 5794.0
1 TraesCS5D01G256500 chr5D 89.993 1529 142 9 956 2474 362886780 362885253 0.000000e+00 1965.0
2 TraesCS5D01G256500 chr5D 79.818 1209 213 22 956 2148 362969321 362968128 0.000000e+00 852.0
3 TraesCS5D01G256500 chr5D 79.745 548 66 25 2582 3124 362885251 362884744 3.850000e-94 355.0
4 TraesCS5D01G256500 chr5D 94.309 123 7 0 659 781 27461732 27461854 4.130000e-44 189.0
5 TraesCS5D01G256500 chr5D 93.651 126 7 1 656 781 138565546 138565670 1.490000e-43 187.0
6 TraesCS5D01G256500 chr5D 92.857 126 8 1 656 781 312934222 312934346 6.910000e-42 182.0
7 TraesCS5D01G256500 chr5B 92.570 1467 105 4 956 2418 429094419 429092953 0.000000e+00 2102.0
8 TraesCS5D01G256500 chr5B 89.770 1525 145 9 956 2474 429068221 429066702 0.000000e+00 1941.0
9 TraesCS5D01G256500 chr5B 89.582 1411 135 7 1067 2474 429177628 429176227 0.000000e+00 1781.0
10 TraesCS5D01G256500 chr5B 80.775 1316 225 21 845 2143 441670458 441671762 0.000000e+00 1003.0
11 TraesCS5D01G256500 chr5B 80.205 1172 203 21 956 2112 429420311 429419154 0.000000e+00 852.0
12 TraesCS5D01G256500 chr5B 86.007 293 37 3 3 291 429068848 429068556 8.450000e-81 311.0
13 TraesCS5D01G256500 chr5B 80.952 378 61 10 1 368 429095185 429094809 3.960000e-74 289.0
14 TraesCS5D01G256500 chr5A 89.886 1493 140 11 956 2441 464177201 464175713 0.000000e+00 1910.0
15 TraesCS5D01G256500 chr5A 89.377 1525 151 7 956 2474 464159777 464158258 0.000000e+00 1908.0
16 TraesCS5D01G256500 chr5A 79.932 1171 208 21 956 2112 464207506 464206349 0.000000e+00 835.0
17 TraesCS5D01G256500 chr5A 85.764 288 38 2 3 287 464160405 464160118 5.080000e-78 302.0
18 TraesCS5D01G256500 chr5A 85.572 201 19 7 2932 3131 464175713 464175522 5.310000e-48 202.0
19 TraesCS5D01G256500 chr5A 95.349 86 3 1 2499 2583 577929059 577928974 5.460000e-28 135.0
20 TraesCS5D01G256500 chr5A 93.258 89 4 2 2499 2585 594645707 594645795 2.540000e-26 130.0
21 TraesCS5D01G256500 chr6B 95.082 122 5 1 664 784 141070082 141070203 1.150000e-44 191.0
22 TraesCS5D01G256500 chr7D 92.366 131 8 2 660 788 177118785 177118655 5.340000e-43 185.0
23 TraesCS5D01G256500 chr3B 94.262 122 6 1 664 784 91445962 91445841 5.340000e-43 185.0
24 TraesCS5D01G256500 chr3B 90.909 44 2 2 3091 3134 454610037 454610078 1.220000e-04 58.4
25 TraesCS5D01G256500 chr2A 94.958 119 5 1 667 784 609453939 609453821 5.340000e-43 185.0
26 TraesCS5D01G256500 chr2A 92.308 130 8 2 663 790 148025461 148025332 1.920000e-42 183.0
27 TraesCS5D01G256500 chr2A 92.857 126 8 1 656 781 613004580 613004704 6.910000e-42 182.0
28 TraesCS5D01G256500 chr4A 88.430 121 6 3 2472 2584 187572349 187572229 4.220000e-29 139.0
29 TraesCS5D01G256500 chr6A 88.333 120 6 4 2472 2583 117376237 117376356 1.520000e-28 137.0
30 TraesCS5D01G256500 chr6A 94.253 87 4 1 2499 2584 407693394 407693480 7.060000e-27 132.0
31 TraesCS5D01G256500 chr2B 88.889 117 5 3 2475 2583 305325235 305325119 1.520000e-28 137.0
32 TraesCS5D01G256500 chr7B 88.235 119 6 4 2475 2585 456489860 456489742 5.460000e-28 135.0
33 TraesCS5D01G256500 chr3A 88.793 116 5 3 2475 2582 486048166 486048281 5.460000e-28 135.0
34 TraesCS5D01G256500 chr3A 92.105 38 3 0 3096 3133 458183785 458183748 2.000000e-03 54.7
35 TraesCS5D01G256500 chr1D 91.667 96 3 5 2505 2595 96456848 96456753 9.130000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G256500 chr5D 362866888 362870024 3136 True 5794.0 5794 100.0000 1 3137 1 chr5D.!!$R1 3136
1 TraesCS5D01G256500 chr5D 362884744 362886780 2036 True 1160.0 1965 84.8690 956 3124 2 chr5D.!!$R3 2168
2 TraesCS5D01G256500 chr5D 362968128 362969321 1193 True 852.0 852 79.8180 956 2148 1 chr5D.!!$R2 1192
3 TraesCS5D01G256500 chr5B 429176227 429177628 1401 True 1781.0 1781 89.5820 1067 2474 1 chr5B.!!$R1 1407
4 TraesCS5D01G256500 chr5B 429092953 429095185 2232 True 1195.5 2102 86.7610 1 2418 2 chr5B.!!$R4 2417
5 TraesCS5D01G256500 chr5B 429066702 429068848 2146 True 1126.0 1941 87.8885 3 2474 2 chr5B.!!$R3 2471
6 TraesCS5D01G256500 chr5B 441670458 441671762 1304 False 1003.0 1003 80.7750 845 2143 1 chr5B.!!$F1 1298
7 TraesCS5D01G256500 chr5B 429419154 429420311 1157 True 852.0 852 80.2050 956 2112 1 chr5B.!!$R2 1156
8 TraesCS5D01G256500 chr5A 464158258 464160405 2147 True 1105.0 1908 87.5705 3 2474 2 chr5A.!!$R3 2471
9 TraesCS5D01G256500 chr5A 464175522 464177201 1679 True 1056.0 1910 87.7290 956 3131 2 chr5A.!!$R4 2175
10 TraesCS5D01G256500 chr5A 464206349 464207506 1157 True 835.0 835 79.9320 956 2112 1 chr5A.!!$R1 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 310 0.251297 TTGTTCATGCCACCCAGGAG 60.251 55.0 0.0 0.0 41.22 3.69 F
877 945 0.616371 ATTGGCAGGCGTAGTTGGTA 59.384 50.0 0.0 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1169 1361 0.537653 GCCTCCTTGACCCAGTACTC 59.462 60.0 0.0 0.0 0.0 2.59 R
2567 2777 0.957362 GGTTATACTCCCTCCGTCCG 59.043 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.038269 CACCAACGCGCCAGGTTAT 61.038 57.895 14.12 0.00 32.15 1.89
42 43 1.672881 GGTTATCGCTGCAATTGCTCT 59.327 47.619 29.37 12.64 42.66 4.09
128 131 6.294176 GCCTTGTACATTTGACATGAACTCTT 60.294 38.462 0.00 0.00 0.00 2.85
132 141 4.863491 ACATTTGACATGAACTCTTGTGC 58.137 39.130 0.00 0.00 34.86 4.57
138 147 2.620115 ACATGAACTCTTGTGCACCTTG 59.380 45.455 15.69 7.75 33.95 3.61
147 157 5.009010 ACTCTTGTGCACCTTGTTAATTCAG 59.991 40.000 15.69 0.35 0.00 3.02
151 161 2.819608 TGCACCTTGTTAATTCAGGAGC 59.180 45.455 10.91 10.91 36.90 4.70
155 165 3.181434 ACCTTGTTAATTCAGGAGCCACA 60.181 43.478 4.91 0.00 0.00 4.17
157 167 4.463891 CCTTGTTAATTCAGGAGCCACATT 59.536 41.667 0.00 0.00 0.00 2.71
165 177 0.324943 AGGAGCCACATTTACGCACT 59.675 50.000 0.00 0.00 0.00 4.40
166 178 1.165270 GGAGCCACATTTACGCACTT 58.835 50.000 0.00 0.00 0.00 3.16
172 184 2.552315 CCACATTTACGCACTTCTTGGT 59.448 45.455 0.00 0.00 0.00 3.67
178 190 6.707161 ACATTTACGCACTTCTTGGTAACTTA 59.293 34.615 0.00 0.00 37.61 2.24
220 233 2.107366 TCCAGATATTGACGAGTGCCA 58.893 47.619 0.00 0.00 0.00 4.92
232 245 2.420022 ACGAGTGCCATGAAAATGCTAC 59.580 45.455 0.00 0.00 0.00 3.58
234 247 3.242543 CGAGTGCCATGAAAATGCTACTC 60.243 47.826 0.00 4.27 33.64 2.59
277 290 3.596214 AGAACACGTTAGGGCATTACAG 58.404 45.455 0.00 0.00 0.00 2.74
278 291 3.007614 AGAACACGTTAGGGCATTACAGT 59.992 43.478 0.00 0.00 0.00 3.55
281 294 3.071479 CACGTTAGGGCATTACAGTTGT 58.929 45.455 0.00 0.00 0.00 3.32
297 310 0.251297 TTGTTCATGCCACCCAGGAG 60.251 55.000 0.00 0.00 41.22 3.69
324 337 4.818417 CGAATGACGGTTGTGTGC 57.182 55.556 0.00 0.00 38.46 4.57
334 347 1.932511 CGGTTGTGTGCAAAAGCATTT 59.067 42.857 5.33 0.00 42.41 2.32
337 350 3.197265 GTTGTGTGCAAAAGCATTTCCT 58.803 40.909 0.00 0.00 37.28 3.36
346 359 2.455674 AAGCATTTCCTTTTTCCGGC 57.544 45.000 0.00 0.00 0.00 6.13
375 388 6.931838 CCTGTTGTAGGTAAGTTACATCTCA 58.068 40.000 14.81 8.07 42.00 3.27
378 391 7.903145 TGTTGTAGGTAAGTTACATCTCATGT 58.097 34.615 14.81 0.00 46.92 3.21
379 392 9.027202 TGTTGTAGGTAAGTTACATCTCATGTA 57.973 33.333 14.81 0.00 44.38 2.29
382 395 8.900781 TGTAGGTAAGTTACATCTCATGTAGAC 58.099 37.037 14.81 0.71 45.58 2.59
383 396 7.956328 AGGTAAGTTACATCTCATGTAGACA 57.044 36.000 14.81 0.00 45.58 3.41
384 397 8.001881 AGGTAAGTTACATCTCATGTAGACAG 57.998 38.462 14.81 0.00 45.58 3.51
385 398 7.616150 AGGTAAGTTACATCTCATGTAGACAGT 59.384 37.037 14.81 0.94 45.58 3.55
387 400 9.077674 GTAAGTTACATCTCATGTAGACAGTTG 57.922 37.037 8.20 0.00 45.58 3.16
388 401 7.468141 AGTTACATCTCATGTAGACAGTTGA 57.532 36.000 0.00 0.00 45.58 3.18
389 402 8.072321 AGTTACATCTCATGTAGACAGTTGAT 57.928 34.615 0.00 0.00 45.58 2.57
391 404 8.598924 GTTACATCTCATGTAGACAGTTGATTG 58.401 37.037 0.00 0.00 45.58 2.67
392 405 6.111382 ACATCTCATGTAGACAGTTGATTGG 58.889 40.000 0.00 0.00 42.78 3.16
394 407 5.970592 TCTCATGTAGACAGTTGATTGGAG 58.029 41.667 0.00 0.00 0.00 3.86
397 410 4.174411 TGTAGACAGTTGATTGGAGACG 57.826 45.455 0.00 0.00 0.00 4.18
402 415 2.289631 ACAGTTGATTGGAGACGCATGA 60.290 45.455 0.00 0.00 0.00 3.07
403 416 2.743664 CAGTTGATTGGAGACGCATGAA 59.256 45.455 0.00 0.00 0.00 2.57
404 417 3.189080 CAGTTGATTGGAGACGCATGAAA 59.811 43.478 0.00 0.00 0.00 2.69
407 420 3.145286 TGATTGGAGACGCATGAAAACA 58.855 40.909 0.00 0.00 0.00 2.83
410 423 5.414144 TGATTGGAGACGCATGAAAACAATA 59.586 36.000 0.00 0.00 0.00 1.90
411 424 5.895636 TTGGAGACGCATGAAAACAATAT 57.104 34.783 0.00 0.00 0.00 1.28
412 425 5.233957 TGGAGACGCATGAAAACAATATG 57.766 39.130 0.00 0.00 0.00 1.78
413 426 4.940654 TGGAGACGCATGAAAACAATATGA 59.059 37.500 0.00 0.00 0.00 2.15
414 427 5.414144 TGGAGACGCATGAAAACAATATGAA 59.586 36.000 0.00 0.00 0.00 2.57
415 428 5.967674 GGAGACGCATGAAAACAATATGAAG 59.032 40.000 0.00 0.00 0.00 3.02
418 431 7.370383 AGACGCATGAAAACAATATGAAGTTT 58.630 30.769 0.00 0.00 39.46 2.66
437 478 8.124823 TGAAGTTTATACTAACGTGATAGTCCG 58.875 37.037 3.22 0.00 37.34 4.79
438 479 6.963796 AGTTTATACTAACGTGATAGTCCGG 58.036 40.000 3.22 0.00 37.34 5.14
439 480 6.543831 AGTTTATACTAACGTGATAGTCCGGT 59.456 38.462 0.00 0.00 37.34 5.28
440 481 7.715249 AGTTTATACTAACGTGATAGTCCGGTA 59.285 37.037 0.00 0.00 37.34 4.02
441 482 8.507249 GTTTATACTAACGTGATAGTCCGGTAT 58.493 37.037 0.00 0.00 37.34 2.73
442 483 9.719355 TTTATACTAACGTGATAGTCCGGTATA 57.281 33.333 0.00 0.00 37.34 1.47
443 484 9.890629 TTATACTAACGTGATAGTCCGGTATAT 57.109 33.333 0.00 0.49 37.34 0.86
446 487 8.798859 ACTAACGTGATAGTCCGGTATATATT 57.201 34.615 0.00 0.00 30.26 1.28
447 488 9.236006 ACTAACGTGATAGTCCGGTATATATTT 57.764 33.333 0.00 0.00 30.26 1.40
449 490 8.976986 AACGTGATAGTCCGGTATATATTTTC 57.023 34.615 0.00 0.00 0.00 2.29
450 491 8.345724 ACGTGATAGTCCGGTATATATTTTCT 57.654 34.615 0.00 0.00 0.00 2.52
451 492 8.800332 ACGTGATAGTCCGGTATATATTTTCTT 58.200 33.333 0.00 0.00 0.00 2.52
452 493 9.073368 CGTGATAGTCCGGTATATATTTTCTTG 57.927 37.037 0.00 0.00 0.00 3.02
473 514 9.874205 TTCTTGATTTAAGCAATTCCTATTTGG 57.126 29.630 0.00 0.00 36.31 3.28
474 515 7.981225 TCTTGATTTAAGCAATTCCTATTTGGC 59.019 33.333 0.00 0.00 36.31 4.52
475 516 6.581712 TGATTTAAGCAATTCCTATTTGGCC 58.418 36.000 0.00 0.00 35.26 5.36
476 517 6.155910 TGATTTAAGCAATTCCTATTTGGCCA 59.844 34.615 0.00 0.00 35.26 5.36
477 518 6.365970 TTTAAGCAATTCCTATTTGGCCAA 57.634 33.333 16.05 16.05 35.26 4.52
478 519 4.906747 AAGCAATTCCTATTTGGCCAAA 57.093 36.364 32.12 32.12 35.26 3.28
479 520 5.440207 AAGCAATTCCTATTTGGCCAAAT 57.560 34.783 38.37 38.37 42.95 2.32
480 521 5.440207 AGCAATTCCTATTTGGCCAAATT 57.560 34.783 40.69 26.78 40.99 1.82
481 522 5.430886 AGCAATTCCTATTTGGCCAAATTC 58.569 37.500 40.69 21.62 40.99 2.17
482 523 4.576053 GCAATTCCTATTTGGCCAAATTCC 59.424 41.667 40.69 15.89 40.99 3.01
483 524 5.629834 GCAATTCCTATTTGGCCAAATTCCT 60.630 40.000 40.69 24.75 40.99 3.36
484 525 6.407979 GCAATTCCTATTTGGCCAAATTCCTA 60.408 38.462 40.69 25.46 40.99 2.94
485 526 6.731292 ATTCCTATTTGGCCAAATTCCTAC 57.269 37.500 40.69 0.00 40.99 3.18
486 527 5.466127 TCCTATTTGGCCAAATTCCTACT 57.534 39.130 40.69 23.05 40.99 2.57
487 528 5.445964 TCCTATTTGGCCAAATTCCTACTC 58.554 41.667 40.69 0.00 40.99 2.59
488 529 5.044476 TCCTATTTGGCCAAATTCCTACTCA 60.044 40.000 40.69 23.19 40.99 3.41
489 530 5.835280 CCTATTTGGCCAAATTCCTACTCAT 59.165 40.000 40.69 21.03 40.99 2.90
490 531 5.603170 ATTTGGCCAAATTCCTACTCATG 57.397 39.130 33.50 0.00 37.74 3.07
491 532 3.017048 TGGCCAAATTCCTACTCATGG 57.983 47.619 0.61 0.00 0.00 3.66
492 533 2.311542 TGGCCAAATTCCTACTCATGGT 59.688 45.455 0.61 0.00 0.00 3.55
493 534 3.525609 TGGCCAAATTCCTACTCATGGTA 59.474 43.478 0.61 0.00 0.00 3.25
494 535 4.137543 GGCCAAATTCCTACTCATGGTAG 58.862 47.826 0.00 12.08 45.45 3.18
495 536 3.565902 GCCAAATTCCTACTCATGGTAGC 59.434 47.826 13.11 0.00 44.75 3.58
496 537 4.780815 CCAAATTCCTACTCATGGTAGCA 58.219 43.478 13.11 0.00 44.75 3.49
497 538 5.192927 CCAAATTCCTACTCATGGTAGCAA 58.807 41.667 13.11 7.64 44.75 3.91
498 539 5.652014 CCAAATTCCTACTCATGGTAGCAAA 59.348 40.000 13.11 10.53 44.75 3.68
499 540 6.322201 CCAAATTCCTACTCATGGTAGCAAAT 59.678 38.462 13.11 11.77 44.75 2.32
500 541 6.949352 AATTCCTACTCATGGTAGCAAATG 57.051 37.500 13.11 0.00 44.75 2.32
501 542 5.435686 TTCCTACTCATGGTAGCAAATGT 57.564 39.130 13.11 0.60 44.75 2.71
502 543 4.769688 TCCTACTCATGGTAGCAAATGTG 58.230 43.478 13.11 0.00 44.75 3.21
503 544 3.879295 CCTACTCATGGTAGCAAATGTGG 59.121 47.826 13.11 0.19 44.75 4.17
504 545 3.439857 ACTCATGGTAGCAAATGTGGT 57.560 42.857 0.00 0.00 39.33 4.16
505 546 3.347216 ACTCATGGTAGCAAATGTGGTC 58.653 45.455 0.00 0.00 36.66 4.02
506 547 2.352651 CTCATGGTAGCAAATGTGGTCG 59.647 50.000 0.00 0.00 36.66 4.79
507 548 2.083774 CATGGTAGCAAATGTGGTCGT 58.916 47.619 0.00 0.00 36.66 4.34
508 549 2.264005 TGGTAGCAAATGTGGTCGTT 57.736 45.000 0.00 0.00 36.66 3.85
509 550 3.404224 TGGTAGCAAATGTGGTCGTTA 57.596 42.857 0.00 0.00 36.66 3.18
510 551 3.945346 TGGTAGCAAATGTGGTCGTTAT 58.055 40.909 0.00 0.00 36.66 1.89
511 552 4.328536 TGGTAGCAAATGTGGTCGTTATT 58.671 39.130 0.00 0.00 36.66 1.40
512 553 4.762765 TGGTAGCAAATGTGGTCGTTATTT 59.237 37.500 0.00 0.00 36.66 1.40
513 554 5.241949 TGGTAGCAAATGTGGTCGTTATTTT 59.758 36.000 0.00 0.00 36.66 1.82
514 555 6.430308 TGGTAGCAAATGTGGTCGTTATTTTA 59.570 34.615 0.00 0.00 36.66 1.52
515 556 6.744082 GGTAGCAAATGTGGTCGTTATTTTAC 59.256 38.462 0.00 0.00 36.66 2.01
516 557 6.320494 AGCAAATGTGGTCGTTATTTTACA 57.680 33.333 0.00 0.00 0.00 2.41
517 558 6.740110 AGCAAATGTGGTCGTTATTTTACAA 58.260 32.000 0.00 0.00 0.00 2.41
518 559 6.861055 AGCAAATGTGGTCGTTATTTTACAAG 59.139 34.615 0.00 0.00 0.00 3.16
519 560 6.639279 GCAAATGTGGTCGTTATTTTACAAGT 59.361 34.615 0.00 0.00 0.00 3.16
520 561 7.804129 GCAAATGTGGTCGTTATTTTACAAGTA 59.196 33.333 0.00 0.00 0.00 2.24
521 562 9.109533 CAAATGTGGTCGTTATTTTACAAGTAC 57.890 33.333 0.00 0.00 0.00 2.73
522 563 7.966246 ATGTGGTCGTTATTTTACAAGTACA 57.034 32.000 0.00 0.00 0.00 2.90
523 564 7.966246 TGTGGTCGTTATTTTACAAGTACAT 57.034 32.000 0.00 0.00 0.00 2.29
524 565 8.020861 TGTGGTCGTTATTTTACAAGTACATC 57.979 34.615 0.00 0.00 0.00 3.06
525 566 7.656542 TGTGGTCGTTATTTTACAAGTACATCA 59.343 33.333 0.00 0.00 0.00 3.07
526 567 8.497554 GTGGTCGTTATTTTACAAGTACATCAA 58.502 33.333 0.00 0.00 0.00 2.57
527 568 9.053840 TGGTCGTTATTTTACAAGTACATCAAA 57.946 29.630 0.00 0.00 0.00 2.69
528 569 9.321590 GGTCGTTATTTTACAAGTACATCAAAC 57.678 33.333 0.00 0.00 0.00 2.93
529 570 9.321590 GTCGTTATTTTACAAGTACATCAAACC 57.678 33.333 0.00 0.00 0.00 3.27
530 571 9.275398 TCGTTATTTTACAAGTACATCAAACCT 57.725 29.630 0.00 0.00 0.00 3.50
531 572 9.887406 CGTTATTTTACAAGTACATCAAACCTT 57.113 29.630 0.00 0.00 0.00 3.50
543 584 9.797556 AGTACATCAAACCTTTAAAAGTTTGAC 57.202 29.630 32.37 24.14 44.90 3.18
544 585 9.027129 GTACATCAAACCTTTAAAAGTTTGACC 57.973 33.333 32.37 21.67 44.90 4.02
545 586 7.616313 ACATCAAACCTTTAAAAGTTTGACCA 58.384 30.769 32.37 19.43 44.90 4.02
546 587 8.264347 ACATCAAACCTTTAAAAGTTTGACCAT 58.736 29.630 32.37 22.65 44.90 3.55
547 588 8.764287 CATCAAACCTTTAAAAGTTTGACCATC 58.236 33.333 32.37 0.00 44.90 3.51
548 589 7.841956 TCAAACCTTTAAAAGTTTGACCATCA 58.158 30.769 28.87 14.41 39.80 3.07
549 590 7.762159 TCAAACCTTTAAAAGTTTGACCATCAC 59.238 33.333 28.87 0.00 39.80 3.06
550 591 7.418337 AACCTTTAAAAGTTTGACCATCACT 57.582 32.000 0.00 0.00 0.00 3.41
551 592 7.418337 ACCTTTAAAAGTTTGACCATCACTT 57.582 32.000 0.00 0.00 31.90 3.16
552 593 7.847096 ACCTTTAAAAGTTTGACCATCACTTT 58.153 30.769 0.00 0.00 41.50 2.66
553 594 7.979537 ACCTTTAAAAGTTTGACCATCACTTTC 59.020 33.333 7.76 0.00 39.34 2.62
554 595 7.438160 CCTTTAAAAGTTTGACCATCACTTTCC 59.562 37.037 7.76 0.00 39.34 3.13
555 596 5.930837 AAAAGTTTGACCATCACTTTCCA 57.069 34.783 7.76 0.00 39.34 3.53
556 597 5.930837 AAAGTTTGACCATCACTTTCCAA 57.069 34.783 0.00 0.00 36.23 3.53
557 598 5.930837 AAGTTTGACCATCACTTTCCAAA 57.069 34.783 0.00 0.00 0.00 3.28
558 599 5.930837 AGTTTGACCATCACTTTCCAAAA 57.069 34.783 0.00 0.00 0.00 2.44
559 600 5.660460 AGTTTGACCATCACTTTCCAAAAC 58.340 37.500 0.00 0.00 0.00 2.43
560 601 5.422012 AGTTTGACCATCACTTTCCAAAACT 59.578 36.000 0.00 0.00 0.00 2.66
561 602 5.514274 TTGACCATCACTTTCCAAAACTC 57.486 39.130 0.00 0.00 0.00 3.01
562 603 4.792068 TGACCATCACTTTCCAAAACTCT 58.208 39.130 0.00 0.00 0.00 3.24
563 604 5.935945 TGACCATCACTTTCCAAAACTCTA 58.064 37.500 0.00 0.00 0.00 2.43
564 605 5.763204 TGACCATCACTTTCCAAAACTCTAC 59.237 40.000 0.00 0.00 0.00 2.59
565 606 5.690865 ACCATCACTTTCCAAAACTCTACA 58.309 37.500 0.00 0.00 0.00 2.74
568 609 6.918022 CCATCACTTTCCAAAACTCTACAAAC 59.082 38.462 0.00 0.00 0.00 2.93
569 610 7.416213 CCATCACTTTCCAAAACTCTACAAACA 60.416 37.037 0.00 0.00 0.00 2.83
572 613 7.973388 TCACTTTCCAAAACTCTACAAACATTG 59.027 33.333 0.00 0.00 0.00 2.82
574 615 8.695456 ACTTTCCAAAACTCTACAAACATTGAT 58.305 29.630 0.00 0.00 0.00 2.57
578 619 9.126151 TCCAAAACTCTACAAACATTGATAACA 57.874 29.630 0.00 0.00 0.00 2.41
680 721 6.852420 TTAAGATAATACTCCCTCCATCCG 57.148 41.667 0.00 0.00 0.00 4.18
681 722 3.714144 AGATAATACTCCCTCCATCCGG 58.286 50.000 0.00 0.00 0.00 5.14
682 723 3.336997 AGATAATACTCCCTCCATCCGGA 59.663 47.826 6.61 6.61 39.79 5.14
686 727 2.489528 ACTCCCTCCATCCGGAAATA 57.510 50.000 9.01 0.00 42.21 1.40
687 728 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
688 729 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
689 730 2.706190 CTCCCTCCATCCGGAAATACTT 59.294 50.000 9.01 0.00 42.21 2.24
691 732 2.172717 CCCTCCATCCGGAAATACTTGT 59.827 50.000 9.01 0.00 42.21 3.16
692 733 3.467803 CCTCCATCCGGAAATACTTGTC 58.532 50.000 9.01 0.00 42.21 3.18
693 734 3.467803 CTCCATCCGGAAATACTTGTCC 58.532 50.000 9.01 0.00 42.21 4.02
694 735 3.112263 TCCATCCGGAAATACTTGTCCT 58.888 45.455 9.01 0.00 38.83 3.85
695 736 4.291792 TCCATCCGGAAATACTTGTCCTA 58.708 43.478 9.01 0.00 38.83 2.94
696 737 4.344102 TCCATCCGGAAATACTTGTCCTAG 59.656 45.833 9.01 0.00 38.83 3.02
699 740 6.346096 CATCCGGAAATACTTGTCCTAGAAA 58.654 40.000 9.01 0.00 0.00 2.52
700 741 6.555463 TCCGGAAATACTTGTCCTAGAAAT 57.445 37.500 0.00 0.00 0.00 2.17
701 742 6.346096 TCCGGAAATACTTGTCCTAGAAATG 58.654 40.000 0.00 0.00 0.00 2.32
702 743 5.527582 CCGGAAATACTTGTCCTAGAAATGG 59.472 44.000 0.00 0.00 0.00 3.16
704 745 6.598064 CGGAAATACTTGTCCTAGAAATGGTT 59.402 38.462 0.00 0.00 0.00 3.67
706 747 7.393515 GGAAATACTTGTCCTAGAAATGGTTGT 59.606 37.037 0.00 0.00 0.00 3.32
708 749 9.975218 AAATACTTGTCCTAGAAATGGTTGTAT 57.025 29.630 0.00 0.00 0.00 2.29
709 750 9.614792 AATACTTGTCCTAGAAATGGTTGTATC 57.385 33.333 0.00 0.00 0.00 2.24
710 751 7.259088 ACTTGTCCTAGAAATGGTTGTATCT 57.741 36.000 0.00 0.00 0.00 1.98
712 753 8.478877 ACTTGTCCTAGAAATGGTTGTATCTAG 58.521 37.037 0.00 0.00 40.55 2.43
713 754 8.603898 TTGTCCTAGAAATGGTTGTATCTAGA 57.396 34.615 9.60 0.00 42.48 2.43
714 755 8.008513 TGTCCTAGAAATGGTTGTATCTAGAC 57.991 38.462 9.60 7.06 42.48 2.59
715 756 7.839705 TGTCCTAGAAATGGTTGTATCTAGACT 59.160 37.037 9.60 0.00 42.48 3.24
716 757 8.697292 GTCCTAGAAATGGTTGTATCTAGACTT 58.303 37.037 9.60 0.00 42.48 3.01
717 758 9.931698 TCCTAGAAATGGTTGTATCTAGACTTA 57.068 33.333 9.60 0.00 42.48 2.24
772 813 4.990257 TCTAGGACAAGTATTTTCGGACG 58.010 43.478 0.00 0.00 0.00 4.79
775 816 4.243270 AGGACAAGTATTTTCGGACGAAG 58.757 43.478 7.25 0.00 35.38 3.79
776 817 3.370061 GGACAAGTATTTTCGGACGAAGG 59.630 47.826 7.25 0.00 35.38 3.46
777 818 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
789 857 3.124636 CGGACGAAGGGAGTGTATTTTTG 59.875 47.826 0.00 0.00 0.00 2.44
790 858 4.070009 GGACGAAGGGAGTGTATTTTTGT 58.930 43.478 0.00 0.00 0.00 2.83
791 859 4.517832 GGACGAAGGGAGTGTATTTTTGTT 59.482 41.667 0.00 0.00 0.00 2.83
792 860 5.432885 ACGAAGGGAGTGTATTTTTGTTG 57.567 39.130 0.00 0.00 0.00 3.33
793 861 5.127491 ACGAAGGGAGTGTATTTTTGTTGA 58.873 37.500 0.00 0.00 0.00 3.18
794 862 5.591067 ACGAAGGGAGTGTATTTTTGTTGAA 59.409 36.000 0.00 0.00 0.00 2.69
795 863 6.095720 ACGAAGGGAGTGTATTTTTGTTGAAA 59.904 34.615 0.00 0.00 0.00 2.69
796 864 6.416750 CGAAGGGAGTGTATTTTTGTTGAAAC 59.583 38.462 0.00 0.00 0.00 2.78
797 865 7.418337 AAGGGAGTGTATTTTTGTTGAAACT 57.582 32.000 0.00 0.00 0.00 2.66
798 866 6.805713 AGGGAGTGTATTTTTGTTGAAACTG 58.194 36.000 0.00 0.00 0.00 3.16
799 867 6.605594 AGGGAGTGTATTTTTGTTGAAACTGA 59.394 34.615 0.00 0.00 0.00 3.41
800 868 7.287696 AGGGAGTGTATTTTTGTTGAAACTGAT 59.712 33.333 0.00 0.00 0.00 2.90
801 869 7.382218 GGGAGTGTATTTTTGTTGAAACTGATG 59.618 37.037 0.00 0.00 0.00 3.07
802 870 7.382218 GGAGTGTATTTTTGTTGAAACTGATGG 59.618 37.037 0.00 0.00 0.00 3.51
803 871 7.781056 AGTGTATTTTTGTTGAAACTGATGGT 58.219 30.769 0.00 0.00 0.00 3.55
804 872 7.920682 AGTGTATTTTTGTTGAAACTGATGGTC 59.079 33.333 0.00 0.00 0.00 4.02
805 873 7.704472 GTGTATTTTTGTTGAAACTGATGGTCA 59.296 33.333 0.00 0.00 0.00 4.02
806 874 8.253810 TGTATTTTTGTTGAAACTGATGGTCAA 58.746 29.630 0.00 0.00 0.00 3.18
807 875 9.092876 GTATTTTTGTTGAAACTGATGGTCAAA 57.907 29.630 0.00 0.00 33.29 2.69
808 876 8.735692 ATTTTTGTTGAAACTGATGGTCAAAT 57.264 26.923 0.00 0.00 33.29 2.32
809 877 9.829507 ATTTTTGTTGAAACTGATGGTCAAATA 57.170 25.926 0.00 0.00 33.29 1.40
810 878 9.829507 TTTTTGTTGAAACTGATGGTCAAATAT 57.170 25.926 0.00 0.00 33.29 1.28
811 879 9.829507 TTTTGTTGAAACTGATGGTCAAATATT 57.170 25.926 0.00 0.00 33.29 1.28
812 880 9.829507 TTTGTTGAAACTGATGGTCAAATATTT 57.170 25.926 0.00 0.00 33.29 1.40
813 881 8.815141 TGTTGAAACTGATGGTCAAATATTTG 57.185 30.769 20.13 20.13 39.48 2.32
814 882 7.384660 TGTTGAAACTGATGGTCAAATATTTGC 59.615 33.333 21.15 15.91 38.05 3.68
815 883 6.990798 TGAAACTGATGGTCAAATATTTGCA 58.009 32.000 21.15 15.13 38.05 4.08
816 884 7.613585 TGAAACTGATGGTCAAATATTTGCAT 58.386 30.769 21.15 18.57 38.05 3.96
817 885 8.095792 TGAAACTGATGGTCAAATATTTGCATT 58.904 29.630 21.15 7.65 38.05 3.56
818 886 7.837202 AACTGATGGTCAAATATTTGCATTG 57.163 32.000 21.15 16.65 38.05 2.82
819 887 6.342906 ACTGATGGTCAAATATTTGCATTGG 58.657 36.000 21.15 16.34 38.05 3.16
820 888 5.672503 TGATGGTCAAATATTTGCATTGGG 58.327 37.500 21.15 0.00 38.05 4.12
821 889 5.189342 TGATGGTCAAATATTTGCATTGGGT 59.811 36.000 21.15 5.42 38.05 4.51
822 890 4.829968 TGGTCAAATATTTGCATTGGGTG 58.170 39.130 21.15 0.00 38.05 4.61
823 891 4.529769 TGGTCAAATATTTGCATTGGGTGA 59.470 37.500 21.15 0.34 38.05 4.02
824 892 5.189342 TGGTCAAATATTTGCATTGGGTGAT 59.811 36.000 21.15 0.00 38.05 3.06
825 893 5.754890 GGTCAAATATTTGCATTGGGTGATC 59.245 40.000 21.15 0.00 38.05 2.92
826 894 6.339730 GTCAAATATTTGCATTGGGTGATCA 58.660 36.000 21.15 0.00 38.05 2.92
827 895 6.987992 GTCAAATATTTGCATTGGGTGATCAT 59.012 34.615 21.15 0.00 38.05 2.45
828 896 8.143193 GTCAAATATTTGCATTGGGTGATCATA 58.857 33.333 21.15 0.00 38.05 2.15
829 897 8.702819 TCAAATATTTGCATTGGGTGATCATAA 58.297 29.630 21.15 0.00 38.05 1.90
830 898 9.496873 CAAATATTTGCATTGGGTGATCATAAT 57.503 29.630 14.96 0.00 0.00 1.28
834 902 8.810990 ATTTGCATTGGGTGATCATAATTTTT 57.189 26.923 0.00 0.00 0.00 1.94
856 924 6.691754 TTTTCGCATTGGATATACATGTGT 57.308 33.333 9.11 4.04 0.00 3.72
859 927 5.550290 TCGCATTGGATATACATGTGTCAT 58.450 37.500 9.11 0.00 0.00 3.06
860 928 5.997129 TCGCATTGGATATACATGTGTCATT 59.003 36.000 9.11 0.00 0.00 2.57
863 931 6.384224 CATTGGATATACATGTGTCATTGGC 58.616 40.000 9.11 0.00 0.00 4.52
864 932 5.046288 TGGATATACATGTGTCATTGGCA 57.954 39.130 9.11 0.00 0.00 4.92
867 935 1.462616 TACATGTGTCATTGGCAGGC 58.537 50.000 9.11 0.00 0.00 4.85
871 939 0.673333 TGTGTCATTGGCAGGCGTAG 60.673 55.000 0.00 0.00 0.00 3.51
875 943 0.676466 TCATTGGCAGGCGTAGTTGG 60.676 55.000 0.00 0.00 0.00 3.77
877 945 0.616371 ATTGGCAGGCGTAGTTGGTA 59.384 50.000 0.00 0.00 0.00 3.25
878 946 0.616371 TTGGCAGGCGTAGTTGGTAT 59.384 50.000 0.00 0.00 0.00 2.73
881 949 1.669265 GGCAGGCGTAGTTGGTATTTC 59.331 52.381 0.00 0.00 0.00 2.17
883 951 3.431207 GGCAGGCGTAGTTGGTATTTCTA 60.431 47.826 0.00 0.00 0.00 2.10
884 952 4.377897 GCAGGCGTAGTTGGTATTTCTAT 58.622 43.478 0.00 0.00 0.00 1.98
885 953 4.814771 GCAGGCGTAGTTGGTATTTCTATT 59.185 41.667 0.00 0.00 0.00 1.73
888 957 7.627726 GCAGGCGTAGTTGGTATTTCTATTTTT 60.628 37.037 0.00 0.00 0.00 1.94
889 958 7.908601 CAGGCGTAGTTGGTATTTCTATTTTTC 59.091 37.037 0.00 0.00 0.00 2.29
898 972 9.974980 TTGGTATTTCTATTTTTCCTTCAACAC 57.025 29.630 0.00 0.00 0.00 3.32
912 986 7.925043 TCCTTCAACACAACACTTTTAAGTA 57.075 32.000 0.00 0.00 37.08 2.24
917 991 8.500753 TCAACACAACACTTTTAAGTAGTCAT 57.499 30.769 0.00 0.00 37.08 3.06
998 1186 4.193090 TGTCGTCTTTGTGGTTGTTGTAT 58.807 39.130 0.00 0.00 0.00 2.29
1005 1193 5.592282 TCTTTGTGGTTGTTGTATCATGTGT 59.408 36.000 0.00 0.00 0.00 3.72
1006 1194 5.431420 TTGTGGTTGTTGTATCATGTGTC 57.569 39.130 0.00 0.00 0.00 3.67
1018 1206 2.981898 TCATGTGTCTGCTTGATCCAG 58.018 47.619 0.00 0.00 0.00 3.86
1026 1214 3.055530 GTCTGCTTGATCCAGGAGAGAAA 60.056 47.826 16.95 0.00 41.50 2.52
1032 1224 5.569630 GCTTGATCCAGGAGAGAAACTACAA 60.570 44.000 0.00 0.00 0.00 2.41
1042 1234 8.405531 CAGGAGAGAAACTACAAAACATGAAAA 58.594 33.333 0.00 0.00 0.00 2.29
1047 1239 9.581099 GAGAAACTACAAAACATGAAAAAGGAA 57.419 29.630 0.00 0.00 0.00 3.36
1155 1347 1.036481 TGCAGCAAGCCACAAACAGA 61.036 50.000 0.00 0.00 44.83 3.41
1159 1351 1.267806 AGCAAGCCACAAACAGATTCG 59.732 47.619 0.00 0.00 0.00 3.34
1169 1361 3.242608 ACAAACAGATTCGGTGAACAACG 60.243 43.478 5.87 5.87 44.11 4.10
1210 1402 2.219164 GGGACCGTGTACAAGGGGT 61.219 63.158 28.15 20.44 38.20 4.95
1326 1518 6.617784 TGTCCCAGGTCAACCATAGAAATATA 59.382 38.462 1.33 0.00 38.89 0.86
1350 1542 2.750350 CTCCTCGGGTGTTGCCTT 59.250 61.111 0.00 0.00 37.43 4.35
1383 1575 5.846714 AGTCCCTATGCTGGTATATGAGTTT 59.153 40.000 0.00 0.00 0.00 2.66
1420 1612 1.204704 TCTTCCAGCTCATACACGGTG 59.795 52.381 6.58 6.58 0.00 4.94
1428 1620 1.207089 CTCATACACGGTGACCATGGT 59.793 52.381 19.89 19.89 0.00 3.55
1482 1674 3.842923 CATGAGTCCGCCGAGGCT 61.843 66.667 12.70 0.00 40.77 4.58
1539 1731 0.038618 TCCACGGTGATGTCAAGTCG 60.039 55.000 10.28 0.00 0.00 4.18
1867 2059 1.699083 TGGATGTTGAGCTCAAGGACA 59.301 47.619 29.13 23.71 36.39 4.02
1990 2182 3.791245 CTTGATAGTCTGAGGAAGGTGC 58.209 50.000 0.00 0.00 0.00 5.01
2200 2404 3.362706 AGCAAGAAATCAGTGGCATCAT 58.637 40.909 0.00 0.00 0.00 2.45
2273 2478 9.800433 TCATTTTGCCAATTATACATGTACAAG 57.200 29.630 7.96 0.00 0.00 3.16
2365 2571 8.755696 ATTTTGCATAGTTCGCTTTTCAAATA 57.244 26.923 0.00 0.00 0.00 1.40
2370 2576 7.644945 TGCATAGTTCGCTTTTCAAATATGATG 59.355 33.333 4.52 0.00 34.10 3.07
2463 2673 7.608308 AAAAAGCTATGATCAGTCAAGAGTC 57.392 36.000 0.09 0.00 38.01 3.36
2474 2684 5.019470 TCAGTCAAGAGTCTGGTATCATGT 58.981 41.667 0.00 0.00 32.70 3.21
2475 2685 6.187682 TCAGTCAAGAGTCTGGTATCATGTA 58.812 40.000 0.00 0.00 32.70 2.29
2476 2686 6.095580 TCAGTCAAGAGTCTGGTATCATGTAC 59.904 42.308 0.00 0.00 32.70 2.90
2477 2687 6.096141 CAGTCAAGAGTCTGGTATCATGTACT 59.904 42.308 0.00 0.00 0.00 2.73
2478 2688 6.665680 AGTCAAGAGTCTGGTATCATGTACTT 59.334 38.462 0.00 0.00 0.00 2.24
2479 2689 6.975772 GTCAAGAGTCTGGTATCATGTACTTC 59.024 42.308 0.00 0.00 0.00 3.01
2480 2690 6.096987 TCAAGAGTCTGGTATCATGTACTTCC 59.903 42.308 0.00 0.00 0.00 3.46
2481 2691 5.772004 AGAGTCTGGTATCATGTACTTCCT 58.228 41.667 0.00 0.00 0.00 3.36
2482 2692 5.830991 AGAGTCTGGTATCATGTACTTCCTC 59.169 44.000 0.00 0.00 0.00 3.71
2483 2693 4.896482 AGTCTGGTATCATGTACTTCCTCC 59.104 45.833 0.00 0.00 0.00 4.30
2484 2694 3.889538 TCTGGTATCATGTACTTCCTCCG 59.110 47.826 0.00 0.00 0.00 4.63
2485 2695 3.637229 CTGGTATCATGTACTTCCTCCGT 59.363 47.826 0.00 0.00 0.00 4.69
2486 2696 3.635373 TGGTATCATGTACTTCCTCCGTC 59.365 47.826 0.00 0.00 0.00 4.79
2487 2697 3.005578 GGTATCATGTACTTCCTCCGTCC 59.994 52.174 0.00 0.00 0.00 4.79
2488 2698 1.100510 TCATGTACTTCCTCCGTCCG 58.899 55.000 0.00 0.00 0.00 4.79
2489 2699 0.102481 CATGTACTTCCTCCGTCCGG 59.898 60.000 0.00 0.00 0.00 5.14
2490 2700 0.033796 ATGTACTTCCTCCGTCCGGA 60.034 55.000 0.00 0.00 42.90 5.14
2491 2701 0.251297 TGTACTTCCTCCGTCCGGAA 60.251 55.000 5.23 0.00 44.66 4.30
2492 2702 0.890683 GTACTTCCTCCGTCCGGAAA 59.109 55.000 5.23 1.47 44.66 3.13
2493 2703 1.479730 GTACTTCCTCCGTCCGGAAAT 59.520 52.381 5.23 0.00 44.66 2.17
2494 2704 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
2495 2705 1.755380 ACTTCCTCCGTCCGGAAATAG 59.245 52.381 5.23 3.15 44.66 1.73
2496 2706 2.029623 CTTCCTCCGTCCGGAAATAGA 58.970 52.381 5.23 0.00 44.66 1.98
2497 2707 1.396653 TCCTCCGTCCGGAAATAGAC 58.603 55.000 5.23 0.00 44.66 2.59
2498 2708 1.108776 CCTCCGTCCGGAAATAGACA 58.891 55.000 5.23 0.00 44.66 3.41
2499 2709 1.479323 CCTCCGTCCGGAAATAGACAA 59.521 52.381 5.23 0.00 44.66 3.18
2500 2710 2.093869 CCTCCGTCCGGAAATAGACAAA 60.094 50.000 5.23 0.00 44.66 2.83
2501 2711 3.431766 CCTCCGTCCGGAAATAGACAAAT 60.432 47.826 5.23 0.00 44.66 2.32
2502 2712 3.527533 TCCGTCCGGAAATAGACAAATG 58.472 45.455 5.23 0.00 42.05 2.32
2503 2713 3.196039 TCCGTCCGGAAATAGACAAATGA 59.804 43.478 5.23 0.00 42.05 2.57
2504 2714 3.936453 CCGTCCGGAAATAGACAAATGAA 59.064 43.478 5.23 0.00 37.50 2.57
2505 2715 4.574828 CCGTCCGGAAATAGACAAATGAAT 59.425 41.667 5.23 0.00 37.50 2.57
2506 2716 5.756347 CCGTCCGGAAATAGACAAATGAATA 59.244 40.000 5.23 0.00 37.50 1.75
2507 2717 6.259167 CCGTCCGGAAATAGACAAATGAATAA 59.741 38.462 5.23 0.00 37.50 1.40
2508 2718 7.201661 CCGTCCGGAAATAGACAAATGAATAAA 60.202 37.037 5.23 0.00 37.50 1.40
2509 2719 8.178964 CGTCCGGAAATAGACAAATGAATAAAA 58.821 33.333 5.23 0.00 33.08 1.52
2556 2766 8.497910 AAATCTAGATACAGCCATTTCTAGGA 57.502 34.615 5.46 0.00 38.67 2.94
2557 2767 6.902771 TCTAGATACAGCCATTTCTAGGAC 57.097 41.667 10.47 0.00 38.67 3.85
2558 2768 6.373759 TCTAGATACAGCCATTTCTAGGACA 58.626 40.000 10.47 0.00 38.67 4.02
2559 2769 5.957771 AGATACAGCCATTTCTAGGACAA 57.042 39.130 0.00 0.00 0.00 3.18
2560 2770 5.923204 AGATACAGCCATTTCTAGGACAAG 58.077 41.667 0.00 0.00 0.00 3.16
2561 2771 5.426833 AGATACAGCCATTTCTAGGACAAGT 59.573 40.000 0.00 0.00 0.00 3.16
2562 2772 6.611642 AGATACAGCCATTTCTAGGACAAGTA 59.388 38.462 0.00 0.00 0.00 2.24
2563 2773 5.700402 ACAGCCATTTCTAGGACAAGTAT 57.300 39.130 0.00 0.00 0.00 2.12
2564 2774 6.067217 ACAGCCATTTCTAGGACAAGTATT 57.933 37.500 0.00 0.00 0.00 1.89
2565 2775 6.485171 ACAGCCATTTCTAGGACAAGTATTT 58.515 36.000 0.00 0.00 0.00 1.40
2566 2776 6.948309 ACAGCCATTTCTAGGACAAGTATTTT 59.052 34.615 0.00 0.00 0.00 1.82
2567 2777 7.121315 ACAGCCATTTCTAGGACAAGTATTTTC 59.879 37.037 0.00 0.00 0.00 2.29
2568 2778 6.316390 AGCCATTTCTAGGACAAGTATTTTCG 59.684 38.462 0.00 0.00 0.00 3.46
2569 2779 6.458342 GCCATTTCTAGGACAAGTATTTTCGG 60.458 42.308 0.00 0.00 0.00 4.30
2570 2780 6.821665 CCATTTCTAGGACAAGTATTTTCGGA 59.178 38.462 0.00 0.00 0.00 4.55
2571 2781 7.201617 CCATTTCTAGGACAAGTATTTTCGGAC 60.202 40.741 0.00 0.00 0.00 4.79
2572 2782 4.990257 TCTAGGACAAGTATTTTCGGACG 58.010 43.478 0.00 0.00 0.00 4.79
2573 2783 2.968675 AGGACAAGTATTTTCGGACGG 58.031 47.619 0.00 0.00 0.00 4.79
2574 2784 2.564062 AGGACAAGTATTTTCGGACGGA 59.436 45.455 0.00 0.00 0.00 4.69
2575 2785 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
2576 2786 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2577 2787 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2578 2788 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2579 2789 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2580 2790 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2585 2795 1.972872 TCGGACGGAGGGAGTATAAC 58.027 55.000 0.00 0.00 0.00 1.89
2602 2812 7.125792 AGTATAACCCAATTCAGACTACTGG 57.874 40.000 0.00 0.00 43.60 4.00
2603 2813 6.901300 AGTATAACCCAATTCAGACTACTGGA 59.099 38.462 0.00 0.00 43.60 3.86
2604 2814 3.983044 ACCCAATTCAGACTACTGGAC 57.017 47.619 0.00 0.00 43.60 4.02
2605 2815 3.521727 ACCCAATTCAGACTACTGGACT 58.478 45.455 0.00 0.00 43.60 3.85
2606 2816 3.910627 ACCCAATTCAGACTACTGGACTT 59.089 43.478 0.00 0.00 43.60 3.01
2607 2817 4.020128 ACCCAATTCAGACTACTGGACTTC 60.020 45.833 0.00 0.00 43.60 3.01
2608 2818 4.223923 CCCAATTCAGACTACTGGACTTCT 59.776 45.833 0.00 0.00 43.60 2.85
2609 2819 5.422331 CCCAATTCAGACTACTGGACTTCTA 59.578 44.000 0.00 0.00 43.60 2.10
2610 2820 6.334202 CCAATTCAGACTACTGGACTTCTAC 58.666 44.000 0.00 0.00 43.60 2.59
2611 2821 5.821516 ATTCAGACTACTGGACTTCTACG 57.178 43.478 0.00 0.00 43.60 3.51
2612 2822 4.283363 TCAGACTACTGGACTTCTACGT 57.717 45.455 0.00 0.00 43.60 3.57
2613 2823 4.252073 TCAGACTACTGGACTTCTACGTC 58.748 47.826 0.00 0.00 43.60 4.34
2628 2838 5.668558 TCTACGTCAGCCTTTTTCTTTTC 57.331 39.130 0.00 0.00 0.00 2.29
2630 2840 2.032924 ACGTCAGCCTTTTTCTTTTCGG 59.967 45.455 0.00 0.00 0.00 4.30
2631 2841 2.394708 GTCAGCCTTTTTCTTTTCGGC 58.605 47.619 0.00 0.00 40.99 5.54
2632 2842 1.339929 TCAGCCTTTTTCTTTTCGGCC 59.660 47.619 0.00 0.00 41.60 6.13
2635 2845 0.038618 CCTTTTTCTTTTCGGCCGGG 60.039 55.000 27.83 10.58 0.00 5.73
2637 2847 1.338655 CTTTTTCTTTTCGGCCGGGAA 59.661 47.619 27.83 20.20 0.00 3.97
2638 2848 1.400737 TTTTCTTTTCGGCCGGGAAA 58.599 45.000 27.83 24.19 34.28 3.13
2649 2859 4.383602 CGGGAAAACACAGGCGCG 62.384 66.667 0.00 0.00 0.00 6.86
2656 2866 3.605749 AACACAGGCGCGGCTATGT 62.606 57.895 36.96 36.96 0.00 2.29
2678 2888 1.079503 CGCCTCTAGCAAGACAAACC 58.920 55.000 0.00 0.00 44.04 3.27
2679 2889 1.608025 CGCCTCTAGCAAGACAAACCA 60.608 52.381 0.00 0.00 44.04 3.67
2687 2897 1.546029 GCAAGACAAACCATCCCCTTC 59.454 52.381 0.00 0.00 0.00 3.46
2690 2900 0.704664 GACAAACCATCCCCTTCCCT 59.295 55.000 0.00 0.00 0.00 4.20
2696 2906 0.704076 CCATCCCCTTCCCTGAAACA 59.296 55.000 0.00 0.00 0.00 2.83
2707 2917 5.336690 CCTTCCCTGAAACAACATGGTAATG 60.337 44.000 0.00 0.00 39.89 1.90
2734 2944 0.384725 CCAGTTGTGCTTTTCGCTCG 60.385 55.000 0.00 0.00 40.11 5.03
2753 2963 3.969012 TCGATCGTTTTTCATTCGTTCG 58.031 40.909 15.94 9.77 43.34 3.95
2754 2964 3.669588 TCGATCGTTTTTCATTCGTTCGA 59.330 39.130 15.94 13.18 45.99 3.71
2756 2966 5.013236 CGATCGTTTTTCATTCGTTCGATT 58.987 37.500 7.03 0.00 44.10 3.34
2757 2967 5.503376 CGATCGTTTTTCATTCGTTCGATTT 59.497 36.000 7.03 0.00 44.10 2.17
2758 2968 6.031003 CGATCGTTTTTCATTCGTTCGATTTT 59.969 34.615 7.03 0.00 44.10 1.82
2759 2969 6.413645 TCGTTTTTCATTCGTTCGATTTTG 57.586 33.333 0.00 0.00 0.00 2.44
2760 2970 5.966503 TCGTTTTTCATTCGTTCGATTTTGT 59.033 32.000 0.00 0.00 0.00 2.83
2761 2971 6.469595 TCGTTTTTCATTCGTTCGATTTTGTT 59.530 30.769 0.00 0.00 0.00 2.83
2762 2972 7.008447 TCGTTTTTCATTCGTTCGATTTTGTTT 59.992 29.630 0.00 0.00 0.00 2.83
2763 2973 7.312411 CGTTTTTCATTCGTTCGATTTTGTTTC 59.688 33.333 0.00 0.00 0.00 2.78
2764 2974 7.979115 TTTTCATTCGTTCGATTTTGTTTCT 57.021 28.000 0.00 0.00 0.00 2.52
2765 2975 7.979115 TTTCATTCGTTCGATTTTGTTTCTT 57.021 28.000 0.00 0.00 0.00 2.52
2766 2976 7.603297 TTCATTCGTTCGATTTTGTTTCTTC 57.397 32.000 0.00 0.00 0.00 2.87
2767 2977 6.140110 TCATTCGTTCGATTTTGTTTCTTCC 58.860 36.000 0.00 0.00 0.00 3.46
2768 2978 5.744666 TTCGTTCGATTTTGTTTCTTCCT 57.255 34.783 0.00 0.00 0.00 3.36
2769 2979 5.744666 TCGTTCGATTTTGTTTCTTCCTT 57.255 34.783 0.00 0.00 0.00 3.36
2770 2980 6.126568 TCGTTCGATTTTGTTTCTTCCTTT 57.873 33.333 0.00 0.00 0.00 3.11
2771 2981 6.557110 TCGTTCGATTTTGTTTCTTCCTTTT 58.443 32.000 0.00 0.00 0.00 2.27
2772 2982 6.689669 TCGTTCGATTTTGTTTCTTCCTTTTC 59.310 34.615 0.00 0.00 0.00 2.29
2773 2983 6.691388 CGTTCGATTTTGTTTCTTCCTTTTCT 59.309 34.615 0.00 0.00 0.00 2.52
2774 2984 7.097006 CGTTCGATTTTGTTTCTTCCTTTTCTC 60.097 37.037 0.00 0.00 0.00 2.87
2779 2989 9.809096 GATTTTGTTTCTTCCTTTTCTCTTTCT 57.191 29.630 0.00 0.00 0.00 2.52
2784 2994 9.639601 TGTTTCTTCCTTTTCTCTTTCTTTTTC 57.360 29.630 0.00 0.00 0.00 2.29
2859 3072 8.892887 AAGTTTGTAAAAATGTTTGTGCAATG 57.107 26.923 0.00 0.00 0.00 2.82
2913 3127 7.244166 TGTTGCAACACATATTTGGAAAAAG 57.756 32.000 27.96 0.00 36.24 2.27
2917 3131 7.492524 TGCAACACATATTTGGAAAAAGTGTA 58.507 30.769 0.00 0.00 37.72 2.90
2922 3136 9.019656 ACACATATTTGGAAAAAGTGTATAGCA 57.980 29.630 0.00 0.00 37.01 3.49
2936 3150 5.990408 GTGTATAGCACATATTGGAGCAAC 58.010 41.667 0.00 0.00 46.91 4.17
2938 3152 6.038161 GTGTATAGCACATATTGGAGCAACAA 59.962 38.462 0.00 0.00 46.91 2.83
2942 3156 4.107622 GCACATATTGGAGCAACAATGTC 58.892 43.478 14.02 0.00 40.97 3.06
3075 3290 6.682863 GCACAAATTAGACATCGAACATGTAC 59.317 38.462 0.00 0.00 31.52 2.90
3078 3293 8.443160 ACAAATTAGACATCGAACATGTACTTG 58.557 33.333 0.00 7.18 31.52 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.439353 ATTGCAGCGATAACCTGGCG 61.439 55.000 0.00 0.00 33.13 5.69
27 28 0.730840 CATCAGAGCAATTGCAGCGA 59.269 50.000 30.89 22.29 45.16 4.93
42 43 1.917872 GGTTGCCTTTGTACCCATCA 58.082 50.000 0.00 0.00 0.00 3.07
63 64 4.578516 CCTTGGCATCCGTTTATGATGTAA 59.421 41.667 0.00 0.00 41.32 2.41
71 72 1.349688 AGTCACCTTGGCATCCGTTTA 59.650 47.619 0.00 0.00 0.00 2.01
72 73 0.110486 AGTCACCTTGGCATCCGTTT 59.890 50.000 0.00 0.00 0.00 3.60
128 131 3.820467 CTCCTGAATTAACAAGGTGCACA 59.180 43.478 20.43 0.00 0.00 4.57
132 141 3.191371 GTGGCTCCTGAATTAACAAGGTG 59.809 47.826 1.08 0.50 0.00 4.00
138 147 5.569413 CGTAAATGTGGCTCCTGAATTAAC 58.431 41.667 0.00 0.00 0.00 2.01
147 157 1.130561 GAAGTGCGTAAATGTGGCTCC 59.869 52.381 0.00 0.00 0.00 4.70
151 161 2.552315 ACCAAGAAGTGCGTAAATGTGG 59.448 45.455 0.00 0.00 0.00 4.17
155 165 7.733402 TTAAGTTACCAAGAAGTGCGTAAAT 57.267 32.000 0.00 0.00 29.93 1.40
157 167 6.762661 AGTTTAAGTTACCAAGAAGTGCGTAA 59.237 34.615 0.00 0.00 0.00 3.18
178 190 7.158021 TGGAACAGAACAATTGTTTTCAGTTT 58.842 30.769 24.02 11.87 38.78 2.66
220 233 3.944015 GCCACAGAGAGTAGCATTTTCAT 59.056 43.478 0.00 0.00 34.79 2.57
232 245 2.109774 AGATTCCAGAGCCACAGAGAG 58.890 52.381 0.00 0.00 0.00 3.20
234 247 1.743091 GCAGATTCCAGAGCCACAGAG 60.743 57.143 0.00 0.00 0.00 3.35
277 290 0.539438 TCCTGGGTGGCATGAACAAC 60.539 55.000 0.00 0.00 35.26 3.32
278 291 0.251297 CTCCTGGGTGGCATGAACAA 60.251 55.000 0.00 0.00 35.26 2.83
281 294 1.002069 AATCTCCTGGGTGGCATGAA 58.998 50.000 0.00 0.00 35.26 2.57
297 310 6.200286 ACACAACCGTCATTCGTCATATAATC 59.800 38.462 0.00 0.00 37.94 1.75
324 337 3.058983 GCCGGAAAAAGGAAATGCTTTTG 60.059 43.478 5.05 3.00 33.65 2.44
334 347 2.043980 GGCATCGCCGGAAAAAGGA 61.044 57.895 5.05 0.00 39.62 3.36
363 376 7.896811 TCAACTGTCTACATGAGATGTAACTT 58.103 34.615 0.00 0.00 44.44 2.66
368 381 6.070596 TCCAATCAACTGTCTACATGAGATGT 60.071 38.462 0.00 0.00 46.92 3.06
369 382 6.343703 TCCAATCAACTGTCTACATGAGATG 58.656 40.000 0.00 0.00 36.29 2.90
371 384 5.716703 TCTCCAATCAACTGTCTACATGAGA 59.283 40.000 0.00 0.00 0.00 3.27
372 385 5.809562 GTCTCCAATCAACTGTCTACATGAG 59.190 44.000 0.00 0.00 0.00 2.90
373 386 5.622233 CGTCTCCAATCAACTGTCTACATGA 60.622 44.000 0.00 0.00 0.00 3.07
374 387 4.564372 CGTCTCCAATCAACTGTCTACATG 59.436 45.833 0.00 0.00 0.00 3.21
375 388 4.748892 CGTCTCCAATCAACTGTCTACAT 58.251 43.478 0.00 0.00 0.00 2.29
378 391 2.560981 TGCGTCTCCAATCAACTGTCTA 59.439 45.455 0.00 0.00 0.00 2.59
379 392 1.344438 TGCGTCTCCAATCAACTGTCT 59.656 47.619 0.00 0.00 0.00 3.41
382 395 2.349590 TCATGCGTCTCCAATCAACTG 58.650 47.619 0.00 0.00 0.00 3.16
383 396 2.768253 TCATGCGTCTCCAATCAACT 57.232 45.000 0.00 0.00 0.00 3.16
384 397 3.829886 TTTCATGCGTCTCCAATCAAC 57.170 42.857 0.00 0.00 0.00 3.18
385 398 3.567585 TGTTTTCATGCGTCTCCAATCAA 59.432 39.130 0.00 0.00 0.00 2.57
387 400 3.829886 TGTTTTCATGCGTCTCCAATC 57.170 42.857 0.00 0.00 0.00 2.67
388 401 4.789012 ATTGTTTTCATGCGTCTCCAAT 57.211 36.364 0.00 0.00 0.00 3.16
389 402 5.414144 TCATATTGTTTTCATGCGTCTCCAA 59.586 36.000 0.00 0.00 0.00 3.53
391 404 5.484173 TCATATTGTTTTCATGCGTCTCC 57.516 39.130 0.00 0.00 0.00 3.71
392 405 6.546395 ACTTCATATTGTTTTCATGCGTCTC 58.454 36.000 0.00 0.00 0.00 3.36
394 407 7.566858 AAACTTCATATTGTTTTCATGCGTC 57.433 32.000 0.00 0.00 33.21 5.19
410 423 9.962783 GGACTATCACGTTAGTATAAACTTCAT 57.037 33.333 0.00 0.00 37.15 2.57
411 424 8.124823 CGGACTATCACGTTAGTATAAACTTCA 58.875 37.037 0.00 0.00 37.15 3.02
412 425 7.589221 CCGGACTATCACGTTAGTATAAACTTC 59.411 40.741 0.00 0.00 37.15 3.01
413 426 7.067494 ACCGGACTATCACGTTAGTATAAACTT 59.933 37.037 9.46 0.00 37.15 2.66
414 427 6.543831 ACCGGACTATCACGTTAGTATAAACT 59.456 38.462 9.46 0.00 39.91 2.66
415 428 6.729187 ACCGGACTATCACGTTAGTATAAAC 58.271 40.000 9.46 0.00 32.59 2.01
421 434 8.798859 AATATATACCGGACTATCACGTTAGT 57.201 34.615 9.46 0.00 35.13 2.24
425 466 8.345724 AGAAAATATATACCGGACTATCACGT 57.654 34.615 9.46 0.00 0.00 4.49
447 488 9.874205 CCAAATAGGAATTGCTTAAATCAAGAA 57.126 29.630 4.26 0.00 41.22 2.52
448 489 7.981225 GCCAAATAGGAATTGCTTAAATCAAGA 59.019 33.333 4.26 0.00 41.22 3.02
449 490 7.225341 GGCCAAATAGGAATTGCTTAAATCAAG 59.775 37.037 4.26 0.00 41.22 3.02
450 491 7.047271 GGCCAAATAGGAATTGCTTAAATCAA 58.953 34.615 4.26 0.00 41.22 2.57
451 492 6.155910 TGGCCAAATAGGAATTGCTTAAATCA 59.844 34.615 0.61 0.00 41.22 2.57
452 493 6.581712 TGGCCAAATAGGAATTGCTTAAATC 58.418 36.000 0.61 0.00 41.22 2.17
453 494 6.558488 TGGCCAAATAGGAATTGCTTAAAT 57.442 33.333 0.61 0.00 41.22 1.40
454 495 6.365970 TTGGCCAAATAGGAATTGCTTAAA 57.634 33.333 17.98 0.00 41.22 1.52
455 496 6.365970 TTTGGCCAAATAGGAATTGCTTAA 57.634 33.333 27.13 0.00 41.22 1.85
456 497 6.558488 ATTTGGCCAAATAGGAATTGCTTA 57.442 33.333 36.79 10.48 39.08 3.09
457 498 4.906747 TTTGGCCAAATAGGAATTGCTT 57.093 36.364 27.13 0.00 41.22 3.91
458 499 5.430886 GAATTTGGCCAAATAGGAATTGCT 58.569 37.500 37.45 22.01 39.88 3.91
459 500 4.576053 GGAATTTGGCCAAATAGGAATTGC 59.424 41.667 37.45 24.92 39.88 3.56
460 501 5.993055 AGGAATTTGGCCAAATAGGAATTG 58.007 37.500 37.45 0.00 39.88 2.32
461 502 6.902974 AGTAGGAATTTGGCCAAATAGGAATT 59.097 34.615 37.45 24.62 39.88 2.17
462 503 6.443832 AGTAGGAATTTGGCCAAATAGGAAT 58.556 36.000 37.45 24.72 39.88 3.01
463 504 5.837829 AGTAGGAATTTGGCCAAATAGGAA 58.162 37.500 37.45 23.02 39.88 3.36
464 505 5.044476 TGAGTAGGAATTTGGCCAAATAGGA 60.044 40.000 37.45 22.62 39.88 2.94
465 506 5.200483 TGAGTAGGAATTTGGCCAAATAGG 58.800 41.667 37.45 0.00 39.88 2.57
466 507 6.239120 CCATGAGTAGGAATTTGGCCAAATAG 60.239 42.308 37.45 18.67 39.88 1.73
467 508 5.598005 CCATGAGTAGGAATTTGGCCAAATA 59.402 40.000 37.45 22.83 39.88 1.40
468 509 4.406649 CCATGAGTAGGAATTTGGCCAAAT 59.593 41.667 33.50 33.50 42.35 2.32
469 510 3.768757 CCATGAGTAGGAATTTGGCCAAA 59.231 43.478 32.12 32.12 34.46 3.28
470 511 3.245586 ACCATGAGTAGGAATTTGGCCAA 60.246 43.478 16.05 16.05 0.00 4.52
471 512 2.311542 ACCATGAGTAGGAATTTGGCCA 59.688 45.455 0.00 0.00 0.00 5.36
472 513 3.018423 ACCATGAGTAGGAATTTGGCC 57.982 47.619 0.00 0.00 0.00 5.36
473 514 4.927357 TGCTACCATGAGTAGGAATTTGGC 60.927 45.833 17.67 7.03 45.42 4.52
474 515 4.780815 TGCTACCATGAGTAGGAATTTGG 58.219 43.478 17.67 0.00 45.42 3.28
483 524 4.513442 GACCACATTTGCTACCATGAGTA 58.487 43.478 0.00 0.00 0.00 2.59
484 525 3.347216 GACCACATTTGCTACCATGAGT 58.653 45.455 0.00 0.00 0.00 3.41
485 526 2.352651 CGACCACATTTGCTACCATGAG 59.647 50.000 0.00 0.00 0.00 2.90
486 527 2.290008 ACGACCACATTTGCTACCATGA 60.290 45.455 0.00 0.00 0.00 3.07
487 528 2.083774 ACGACCACATTTGCTACCATG 58.916 47.619 0.00 0.00 0.00 3.66
488 529 2.489938 ACGACCACATTTGCTACCAT 57.510 45.000 0.00 0.00 0.00 3.55
489 530 2.264005 AACGACCACATTTGCTACCA 57.736 45.000 0.00 0.00 0.00 3.25
490 531 4.957759 AATAACGACCACATTTGCTACC 57.042 40.909 0.00 0.00 0.00 3.18
491 532 7.299586 TGTAAAATAACGACCACATTTGCTAC 58.700 34.615 0.00 0.00 0.00 3.58
492 533 7.436430 TGTAAAATAACGACCACATTTGCTA 57.564 32.000 0.00 0.00 0.00 3.49
493 534 6.320494 TGTAAAATAACGACCACATTTGCT 57.680 33.333 0.00 0.00 0.00 3.91
494 535 6.639279 ACTTGTAAAATAACGACCACATTTGC 59.361 34.615 0.00 0.00 0.00 3.68
495 536 9.109533 GTACTTGTAAAATAACGACCACATTTG 57.890 33.333 0.00 0.00 0.00 2.32
496 537 8.838365 TGTACTTGTAAAATAACGACCACATTT 58.162 29.630 0.00 0.00 0.00 2.32
497 538 8.380743 TGTACTTGTAAAATAACGACCACATT 57.619 30.769 0.00 0.00 0.00 2.71
498 539 7.966246 TGTACTTGTAAAATAACGACCACAT 57.034 32.000 0.00 0.00 0.00 3.21
499 540 7.656542 TGATGTACTTGTAAAATAACGACCACA 59.343 33.333 0.00 0.00 0.00 4.17
500 541 8.020861 TGATGTACTTGTAAAATAACGACCAC 57.979 34.615 0.00 0.00 0.00 4.16
501 542 8.604640 TTGATGTACTTGTAAAATAACGACCA 57.395 30.769 0.00 0.00 0.00 4.02
502 543 9.321590 GTTTGATGTACTTGTAAAATAACGACC 57.678 33.333 0.00 0.00 0.00 4.79
503 544 9.321590 GGTTTGATGTACTTGTAAAATAACGAC 57.678 33.333 0.00 0.00 0.00 4.34
504 545 9.275398 AGGTTTGATGTACTTGTAAAATAACGA 57.725 29.630 0.00 0.00 0.00 3.85
505 546 9.887406 AAGGTTTGATGTACTTGTAAAATAACG 57.113 29.630 0.00 0.00 0.00 3.18
525 566 7.847096 AGTGATGGTCAAACTTTTAAAGGTTT 58.153 30.769 19.43 19.43 35.93 3.27
526 567 7.418337 AGTGATGGTCAAACTTTTAAAGGTT 57.582 32.000 9.71 9.71 39.51 3.50
527 568 7.418337 AAGTGATGGTCAAACTTTTAAAGGT 57.582 32.000 9.64 0.00 29.98 3.50
528 569 7.438160 GGAAAGTGATGGTCAAACTTTTAAAGG 59.562 37.037 9.64 0.00 42.60 3.11
529 570 7.978975 TGGAAAGTGATGGTCAAACTTTTAAAG 59.021 33.333 2.81 2.81 42.60 1.85
530 571 7.841956 TGGAAAGTGATGGTCAAACTTTTAAA 58.158 30.769 12.97 0.00 42.60 1.52
531 572 7.411486 TGGAAAGTGATGGTCAAACTTTTAA 57.589 32.000 12.97 5.85 42.60 1.52
532 573 7.411486 TTGGAAAGTGATGGTCAAACTTTTA 57.589 32.000 12.97 6.56 42.60 1.52
533 574 5.930837 TGGAAAGTGATGGTCAAACTTTT 57.069 34.783 12.97 2.73 42.60 2.27
534 575 5.930837 TTGGAAAGTGATGGTCAAACTTT 57.069 34.783 12.10 12.10 44.61 2.66
535 576 5.930837 TTTGGAAAGTGATGGTCAAACTT 57.069 34.783 0.00 0.00 35.70 2.66
536 577 5.422012 AGTTTTGGAAAGTGATGGTCAAACT 59.578 36.000 0.00 0.00 0.00 2.66
537 578 5.660460 AGTTTTGGAAAGTGATGGTCAAAC 58.340 37.500 0.00 0.00 0.00 2.93
538 579 5.656416 AGAGTTTTGGAAAGTGATGGTCAAA 59.344 36.000 0.00 0.00 0.00 2.69
539 580 5.200483 AGAGTTTTGGAAAGTGATGGTCAA 58.800 37.500 0.00 0.00 0.00 3.18
540 581 4.792068 AGAGTTTTGGAAAGTGATGGTCA 58.208 39.130 0.00 0.00 0.00 4.02
541 582 5.763204 TGTAGAGTTTTGGAAAGTGATGGTC 59.237 40.000 0.00 0.00 0.00 4.02
542 583 5.690865 TGTAGAGTTTTGGAAAGTGATGGT 58.309 37.500 0.00 0.00 0.00 3.55
543 584 6.633500 TTGTAGAGTTTTGGAAAGTGATGG 57.367 37.500 0.00 0.00 0.00 3.51
544 585 7.479980 TGTTTGTAGAGTTTTGGAAAGTGATG 58.520 34.615 0.00 0.00 0.00 3.07
545 586 7.639113 TGTTTGTAGAGTTTTGGAAAGTGAT 57.361 32.000 0.00 0.00 0.00 3.06
546 587 7.639113 ATGTTTGTAGAGTTTTGGAAAGTGA 57.361 32.000 0.00 0.00 0.00 3.41
547 588 7.973388 TCAATGTTTGTAGAGTTTTGGAAAGTG 59.027 33.333 0.00 0.00 0.00 3.16
548 589 8.062065 TCAATGTTTGTAGAGTTTTGGAAAGT 57.938 30.769 0.00 0.00 0.00 2.66
551 592 9.959749 GTTATCAATGTTTGTAGAGTTTTGGAA 57.040 29.630 0.00 0.00 0.00 3.53
552 593 9.126151 TGTTATCAATGTTTGTAGAGTTTTGGA 57.874 29.630 0.00 0.00 0.00 3.53
553 594 9.912634 ATGTTATCAATGTTTGTAGAGTTTTGG 57.087 29.630 0.00 0.00 0.00 3.28
653 694 8.881262 GGATGGAGGGAGTATTATCTTAAAAGA 58.119 37.037 0.00 0.00 39.78 2.52
654 695 7.819900 CGGATGGAGGGAGTATTATCTTAAAAG 59.180 40.741 0.00 0.00 0.00 2.27
655 696 7.256547 CCGGATGGAGGGAGTATTATCTTAAAA 60.257 40.741 0.00 0.00 37.49 1.52
656 697 6.212791 CCGGATGGAGGGAGTATTATCTTAAA 59.787 42.308 0.00 0.00 37.49 1.52
657 698 5.720041 CCGGATGGAGGGAGTATTATCTTAA 59.280 44.000 0.00 0.00 37.49 1.85
658 699 5.015924 TCCGGATGGAGGGAGTATTATCTTA 59.984 44.000 0.00 0.00 40.17 2.10
659 700 4.097418 CCGGATGGAGGGAGTATTATCTT 58.903 47.826 0.00 0.00 37.49 2.40
660 701 3.336997 TCCGGATGGAGGGAGTATTATCT 59.663 47.826 0.00 0.00 40.17 1.98
661 702 3.709587 TCCGGATGGAGGGAGTATTATC 58.290 50.000 0.00 0.00 40.17 1.75
676 717 6.555463 TTTCTAGGACAAGTATTTCCGGAT 57.445 37.500 4.15 0.00 36.95 4.18
680 721 7.393515 ACAACCATTTCTAGGACAAGTATTTCC 59.606 37.037 0.00 0.00 0.00 3.13
681 722 8.336801 ACAACCATTTCTAGGACAAGTATTTC 57.663 34.615 0.00 0.00 0.00 2.17
682 723 9.975218 ATACAACCATTTCTAGGACAAGTATTT 57.025 29.630 0.00 0.00 0.00 1.40
686 727 7.259088 AGATACAACCATTTCTAGGACAAGT 57.741 36.000 0.00 0.00 0.00 3.16
687 728 8.696374 TCTAGATACAACCATTTCTAGGACAAG 58.304 37.037 6.10 0.00 38.67 3.16
688 729 8.475639 GTCTAGATACAACCATTTCTAGGACAA 58.524 37.037 0.00 0.00 38.67 3.18
689 730 7.839705 AGTCTAGATACAACCATTTCTAGGACA 59.160 37.037 0.00 0.00 38.67 4.02
691 732 8.840200 AAGTCTAGATACAACCATTTCTAGGA 57.160 34.615 0.00 0.00 38.67 2.94
735 776 9.667107 ACTTGTCCTAGAAATGAATAAAATCGA 57.333 29.630 0.00 0.00 0.00 3.59
745 786 7.548075 GTCCGAAAATACTTGTCCTAGAAATGA 59.452 37.037 0.00 0.00 0.00 2.57
746 787 7.464178 CGTCCGAAAATACTTGTCCTAGAAATG 60.464 40.741 0.00 0.00 0.00 2.32
747 788 6.534079 CGTCCGAAAATACTTGTCCTAGAAAT 59.466 38.462 0.00 0.00 0.00 2.17
748 789 5.865552 CGTCCGAAAATACTTGTCCTAGAAA 59.134 40.000 0.00 0.00 0.00 2.52
752 793 5.389859 TTCGTCCGAAAATACTTGTCCTA 57.610 39.130 0.00 0.00 0.00 2.94
754 795 3.370061 CCTTCGTCCGAAAATACTTGTCC 59.630 47.826 3.52 0.00 33.34 4.02
755 796 3.370061 CCCTTCGTCCGAAAATACTTGTC 59.630 47.826 3.52 0.00 33.34 3.18
763 804 0.754472 ACACTCCCTTCGTCCGAAAA 59.246 50.000 3.52 0.00 33.34 2.29
765 806 1.843368 ATACACTCCCTTCGTCCGAA 58.157 50.000 1.81 1.81 0.00 4.30
767 808 2.667473 AAATACACTCCCTTCGTCCG 57.333 50.000 0.00 0.00 0.00 4.79
768 809 4.070009 ACAAAAATACACTCCCTTCGTCC 58.930 43.478 0.00 0.00 0.00 4.79
772 813 7.435192 CAGTTTCAACAAAAATACACTCCCTTC 59.565 37.037 0.00 0.00 0.00 3.46
775 816 6.801575 TCAGTTTCAACAAAAATACACTCCC 58.198 36.000 0.00 0.00 0.00 4.30
776 817 7.382218 CCATCAGTTTCAACAAAAATACACTCC 59.618 37.037 0.00 0.00 0.00 3.85
777 818 7.920682 ACCATCAGTTTCAACAAAAATACACTC 59.079 33.333 0.00 0.00 0.00 3.51
789 857 7.384660 TGCAAATATTTGACCATCAGTTTCAAC 59.615 33.333 28.33 8.03 40.55 3.18
790 858 7.440198 TGCAAATATTTGACCATCAGTTTCAA 58.560 30.769 28.33 1.09 40.55 2.69
791 859 6.990798 TGCAAATATTTGACCATCAGTTTCA 58.009 32.000 28.33 11.34 40.55 2.69
792 860 8.385111 CAATGCAAATATTTGACCATCAGTTTC 58.615 33.333 28.33 9.14 40.55 2.78
793 861 7.334921 CCAATGCAAATATTTGACCATCAGTTT 59.665 33.333 28.33 8.49 40.55 2.66
794 862 6.819649 CCAATGCAAATATTTGACCATCAGTT 59.180 34.615 28.33 8.79 40.55 3.16
795 863 6.342906 CCAATGCAAATATTTGACCATCAGT 58.657 36.000 28.33 14.22 40.55 3.41
796 864 5.756347 CCCAATGCAAATATTTGACCATCAG 59.244 40.000 28.33 17.59 40.55 2.90
797 865 5.189342 ACCCAATGCAAATATTTGACCATCA 59.811 36.000 28.33 17.34 40.55 3.07
798 866 5.524646 CACCCAATGCAAATATTTGACCATC 59.475 40.000 28.33 12.75 40.55 3.51
799 867 5.189342 TCACCCAATGCAAATATTTGACCAT 59.811 36.000 28.33 19.81 40.55 3.55
800 868 4.529769 TCACCCAATGCAAATATTTGACCA 59.470 37.500 28.33 18.61 40.55 4.02
801 869 5.083533 TCACCCAATGCAAATATTTGACC 57.916 39.130 28.33 14.04 40.55 4.02
802 870 6.339730 TGATCACCCAATGCAAATATTTGAC 58.660 36.000 28.33 19.70 40.55 3.18
803 871 6.541934 TGATCACCCAATGCAAATATTTGA 57.458 33.333 28.33 15.28 40.55 2.69
804 872 8.890124 TTATGATCACCCAATGCAAATATTTG 57.110 30.769 21.54 21.54 41.03 2.32
808 876 9.902684 AAAAATTATGATCACCCAATGCAAATA 57.097 25.926 0.00 0.00 0.00 1.40
809 877 8.810990 AAAAATTATGATCACCCAATGCAAAT 57.189 26.923 0.00 0.00 0.00 2.32
832 900 7.094508 ACACATGTATATCCAATGCGAAAAA 57.905 32.000 0.00 0.00 0.00 1.94
833 901 6.317391 TGACACATGTATATCCAATGCGAAAA 59.683 34.615 0.00 0.00 0.00 2.29
834 902 5.819901 TGACACATGTATATCCAATGCGAAA 59.180 36.000 0.00 0.00 0.00 3.46
835 903 5.363939 TGACACATGTATATCCAATGCGAA 58.636 37.500 0.00 0.00 0.00 4.70
836 904 4.954875 TGACACATGTATATCCAATGCGA 58.045 39.130 0.00 0.00 0.00 5.10
837 905 5.868043 ATGACACATGTATATCCAATGCG 57.132 39.130 0.00 0.00 0.00 4.73
838 906 6.384224 CCAATGACACATGTATATCCAATGC 58.616 40.000 0.00 0.00 0.00 3.56
839 907 6.016108 TGCCAATGACACATGTATATCCAATG 60.016 38.462 0.00 0.00 0.00 2.82
840 908 6.069994 TGCCAATGACACATGTATATCCAAT 58.930 36.000 0.00 0.00 0.00 3.16
841 909 5.444176 TGCCAATGACACATGTATATCCAA 58.556 37.500 0.00 0.00 0.00 3.53
842 910 5.046288 TGCCAATGACACATGTATATCCA 57.954 39.130 0.00 0.00 0.00 3.41
843 911 4.456911 CCTGCCAATGACACATGTATATCC 59.543 45.833 0.00 0.00 0.00 2.59
856 924 0.676466 CCAACTACGCCTGCCAATGA 60.676 55.000 0.00 0.00 0.00 2.57
859 927 0.616371 ATACCAACTACGCCTGCCAA 59.384 50.000 0.00 0.00 0.00 4.52
860 928 0.616371 AATACCAACTACGCCTGCCA 59.384 50.000 0.00 0.00 0.00 4.92
863 931 6.920569 AAATAGAAATACCAACTACGCCTG 57.079 37.500 0.00 0.00 0.00 4.85
864 932 7.066645 GGAAAAATAGAAATACCAACTACGCCT 59.933 37.037 0.00 0.00 0.00 5.52
867 935 9.983804 GAAGGAAAAATAGAAATACCAACTACG 57.016 33.333 0.00 0.00 0.00 3.51
871 939 9.974980 TGTTGAAGGAAAAATAGAAATACCAAC 57.025 29.630 0.00 0.00 0.00 3.77
877 945 9.313118 GTGTTGTGTTGAAGGAAAAATAGAAAT 57.687 29.630 0.00 0.00 0.00 2.17
878 946 8.527810 AGTGTTGTGTTGAAGGAAAAATAGAAA 58.472 29.630 0.00 0.00 0.00 2.52
881 949 8.702163 AAAGTGTTGTGTTGAAGGAAAAATAG 57.298 30.769 0.00 0.00 0.00 1.73
883 951 7.977789 AAAAGTGTTGTGTTGAAGGAAAAAT 57.022 28.000 0.00 0.00 0.00 1.82
884 952 8.888579 TTAAAAGTGTTGTGTTGAAGGAAAAA 57.111 26.923 0.00 0.00 0.00 1.94
885 953 8.145122 ACTTAAAAGTGTTGTGTTGAAGGAAAA 58.855 29.630 0.00 0.00 37.98 2.29
888 957 6.827586 ACTTAAAAGTGTTGTGTTGAAGGA 57.172 33.333 0.00 0.00 37.98 3.36
889 958 7.758495 ACTACTTAAAAGTGTTGTGTTGAAGG 58.242 34.615 5.62 0.00 40.07 3.46
917 991 9.787435 ACAACAAGTTAGTTTCCATATGAGTAA 57.213 29.630 3.65 0.00 0.00 2.24
926 1000 6.576662 TTGTTCACAACAAGTTAGTTTCCA 57.423 33.333 0.00 0.00 45.79 3.53
938 1012 3.317711 CCTGCAGGTATTTGTTCACAACA 59.682 43.478 25.53 0.00 40.21 3.33
939 1013 3.900941 CCTGCAGGTATTTGTTCACAAC 58.099 45.455 25.53 0.00 35.28 3.32
972 1160 3.864243 ACAACCACAAAGACGACAAGTA 58.136 40.909 0.00 0.00 0.00 2.24
998 1186 2.355412 CCTGGATCAAGCAGACACATGA 60.355 50.000 0.00 0.00 0.00 3.07
1005 1193 2.539432 TCTCTCCTGGATCAAGCAGA 57.461 50.000 0.00 0.00 0.00 4.26
1006 1194 3.055240 AGTTTCTCTCCTGGATCAAGCAG 60.055 47.826 0.00 0.00 0.00 4.24
1018 1206 9.237846 CTTTTTCATGTTTTGTAGTTTCTCTCC 57.762 33.333 0.00 0.00 0.00 3.71
1056 1248 1.471119 ATATCAGACCACCGTGTCGT 58.529 50.000 0.00 0.00 40.26 4.34
1058 1250 6.046593 TCAAATAATATCAGACCACCGTGTC 58.953 40.000 0.00 0.00 35.43 3.67
1059 1251 5.984725 TCAAATAATATCAGACCACCGTGT 58.015 37.500 0.00 0.00 0.00 4.49
1119 1311 3.119708 GCTGCAATTCTTCTTCCGTGAAT 60.120 43.478 0.00 0.00 32.52 2.57
1155 1347 3.314553 CAGTACTCGTTGTTCACCGAAT 58.685 45.455 0.00 0.00 31.92 3.34
1159 1351 1.069668 ACCCAGTACTCGTTGTTCACC 59.930 52.381 0.00 0.00 0.00 4.02
1169 1361 0.537653 GCCTCCTTGACCCAGTACTC 59.462 60.000 0.00 0.00 0.00 2.59
1210 1402 6.882678 GCTACTTCCACATTACCCTTAAGAAA 59.117 38.462 3.36 0.00 0.00 2.52
1326 1518 1.122019 AACACCCGAGGAGCTTCACT 61.122 55.000 0.00 0.00 0.00 3.41
1350 1542 2.237143 CAGCATAGGGACTTCCACTTCA 59.763 50.000 0.00 0.00 41.75 3.02
1420 1612 2.563179 AGGAGATACGCATACCATGGTC 59.437 50.000 23.76 6.29 0.00 4.02
1428 1620 3.497332 AGTAGCCAAGGAGATACGCATA 58.503 45.455 0.00 0.00 0.00 3.14
1482 1674 1.544691 GACGAGTGAAGGTAGGCAAGA 59.455 52.381 0.00 0.00 0.00 3.02
1539 1731 4.761739 TCCATGTCAAGAAGAATGTTGGAC 59.238 41.667 0.00 0.00 31.03 4.02
1867 2059 6.441924 TCTTCAAGAATCTCTGTGTTATCCCT 59.558 38.462 0.00 0.00 0.00 4.20
1990 2182 1.252215 TGCACCCATGGATGTTGCAG 61.252 55.000 15.22 0.00 38.92 4.41
2076 2280 6.595326 TCTCGATGCTGAAATATTCAACACTT 59.405 34.615 0.00 0.00 38.44 3.16
2365 2571 6.094048 GTCAAGCATTTACCACACTACATCAT 59.906 38.462 0.00 0.00 0.00 2.45
2370 2576 4.377022 CGTGTCAAGCATTTACCACACTAC 60.377 45.833 0.00 0.00 33.46 2.73
2419 2625 3.840890 TTTGTTGTTGCGAAAGACTGT 57.159 38.095 0.00 0.00 0.00 3.55
2463 2673 3.637229 ACGGAGGAAGTACATGATACCAG 59.363 47.826 0.00 0.00 0.00 4.00
2477 2687 1.753073 GTCTATTTCCGGACGGAGGAA 59.247 52.381 13.64 6.93 46.06 3.36
2478 2688 1.341285 TGTCTATTTCCGGACGGAGGA 60.341 52.381 13.64 7.39 46.06 3.71
2479 2689 1.108776 TGTCTATTTCCGGACGGAGG 58.891 55.000 13.64 6.23 46.06 4.30
2480 2690 2.953466 TTGTCTATTTCCGGACGGAG 57.047 50.000 13.64 0.73 46.06 4.63
2481 2691 3.196039 TCATTTGTCTATTTCCGGACGGA 59.804 43.478 1.83 9.76 43.52 4.69
2482 2692 3.527533 TCATTTGTCTATTTCCGGACGG 58.472 45.455 1.83 3.96 35.45 4.79
2483 2693 5.734855 ATTCATTTGTCTATTTCCGGACG 57.265 39.130 1.83 0.00 35.45 4.79
2530 2740 9.601810 TCCTAGAAATGGCTGTATCTAGATTTA 57.398 33.333 11.25 0.00 42.48 1.40
2531 2741 8.371699 GTCCTAGAAATGGCTGTATCTAGATTT 58.628 37.037 11.25 0.00 42.48 2.17
2532 2742 7.510685 TGTCCTAGAAATGGCTGTATCTAGATT 59.489 37.037 11.25 0.00 42.48 2.40
2533 2743 7.013220 TGTCCTAGAAATGGCTGTATCTAGAT 58.987 38.462 10.73 10.73 42.48 1.98
2534 2744 6.373759 TGTCCTAGAAATGGCTGTATCTAGA 58.626 40.000 14.52 0.00 42.48 2.43
2535 2745 6.656632 TGTCCTAGAAATGGCTGTATCTAG 57.343 41.667 0.00 0.00 40.55 2.43
2536 2746 6.611642 ACTTGTCCTAGAAATGGCTGTATCTA 59.388 38.462 0.00 0.00 0.00 1.98
2537 2747 5.426833 ACTTGTCCTAGAAATGGCTGTATCT 59.573 40.000 0.00 0.00 0.00 1.98
2538 2748 5.675538 ACTTGTCCTAGAAATGGCTGTATC 58.324 41.667 0.00 0.00 0.00 2.24
2539 2749 5.700402 ACTTGTCCTAGAAATGGCTGTAT 57.300 39.130 0.00 0.00 0.00 2.29
2540 2750 6.808321 ATACTTGTCCTAGAAATGGCTGTA 57.192 37.500 0.00 0.00 0.00 2.74
2541 2751 5.700402 ATACTTGTCCTAGAAATGGCTGT 57.300 39.130 0.00 0.00 0.00 4.40
2542 2752 7.396540 AAAATACTTGTCCTAGAAATGGCTG 57.603 36.000 0.00 0.00 0.00 4.85
2543 2753 6.316390 CGAAAATACTTGTCCTAGAAATGGCT 59.684 38.462 0.00 0.00 0.00 4.75
2544 2754 6.458342 CCGAAAATACTTGTCCTAGAAATGGC 60.458 42.308 0.00 0.00 0.00 4.40
2545 2755 6.821665 TCCGAAAATACTTGTCCTAGAAATGG 59.178 38.462 0.00 0.00 0.00 3.16
2546 2756 7.464178 CGTCCGAAAATACTTGTCCTAGAAATG 60.464 40.741 0.00 0.00 0.00 2.32
2547 2757 6.534079 CGTCCGAAAATACTTGTCCTAGAAAT 59.466 38.462 0.00 0.00 0.00 2.17
2548 2758 5.865552 CGTCCGAAAATACTTGTCCTAGAAA 59.134 40.000 0.00 0.00 0.00 2.52
2549 2759 5.404946 CGTCCGAAAATACTTGTCCTAGAA 58.595 41.667 0.00 0.00 0.00 2.10
2550 2760 4.142315 CCGTCCGAAAATACTTGTCCTAGA 60.142 45.833 0.00 0.00 0.00 2.43
2551 2761 4.110482 CCGTCCGAAAATACTTGTCCTAG 58.890 47.826 0.00 0.00 0.00 3.02
2552 2762 3.763360 TCCGTCCGAAAATACTTGTCCTA 59.237 43.478 0.00 0.00 0.00 2.94
2553 2763 2.564062 TCCGTCCGAAAATACTTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
2554 2764 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
2555 2765 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2556 2766 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2557 2767 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2558 2768 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2559 2769 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2560 2770 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2561 2771 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2562 2772 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2563 2773 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2564 2774 2.689983 GTTATACTCCCTCCGTCCGAAA 59.310 50.000 0.00 0.00 0.00 3.46
2565 2775 2.301346 GTTATACTCCCTCCGTCCGAA 58.699 52.381 0.00 0.00 0.00 4.30
2566 2776 1.477558 GGTTATACTCCCTCCGTCCGA 60.478 57.143 0.00 0.00 0.00 4.55
2567 2777 0.957362 GGTTATACTCCCTCCGTCCG 59.043 60.000 0.00 0.00 0.00 4.79
2568 2778 1.336131 GGGTTATACTCCCTCCGTCC 58.664 60.000 5.24 0.00 41.58 4.79
2569 2779 2.077687 TGGGTTATACTCCCTCCGTC 57.922 55.000 11.93 0.00 44.84 4.79
2570 2780 2.555732 TTGGGTTATACTCCCTCCGT 57.444 50.000 11.93 0.00 44.84 4.69
2571 2781 3.389983 TGAATTGGGTTATACTCCCTCCG 59.610 47.826 11.93 0.00 44.84 4.63
2572 2782 4.658901 TCTGAATTGGGTTATACTCCCTCC 59.341 45.833 11.93 0.00 44.84 4.30
2573 2783 5.367060 AGTCTGAATTGGGTTATACTCCCTC 59.633 44.000 11.93 4.26 44.84 4.30
2574 2784 5.289510 AGTCTGAATTGGGTTATACTCCCT 58.710 41.667 11.93 0.00 44.84 4.20
2575 2785 5.632034 AGTCTGAATTGGGTTATACTCCC 57.368 43.478 5.47 5.47 44.81 4.30
2576 2786 7.210873 CAGTAGTCTGAATTGGGTTATACTCC 58.789 42.308 0.00 0.00 43.76 3.85
2577 2787 7.069578 TCCAGTAGTCTGAATTGGGTTATACTC 59.930 40.741 0.00 0.00 43.76 2.59
2578 2788 6.901300 TCCAGTAGTCTGAATTGGGTTATACT 59.099 38.462 0.00 0.00 43.76 2.12
2579 2789 6.985059 GTCCAGTAGTCTGAATTGGGTTATAC 59.015 42.308 0.00 0.00 43.76 1.47
2580 2790 6.901300 AGTCCAGTAGTCTGAATTGGGTTATA 59.099 38.462 0.00 0.00 43.76 0.98
2585 2795 4.223923 AGAAGTCCAGTAGTCTGAATTGGG 59.776 45.833 0.00 0.00 43.76 4.12
2595 2805 2.748532 GCTGACGTAGAAGTCCAGTAGT 59.251 50.000 0.00 0.00 40.26 2.73
2602 2812 4.308265 AGAAAAAGGCTGACGTAGAAGTC 58.692 43.478 0.00 0.00 41.30 3.01
2603 2813 4.338379 AGAAAAAGGCTGACGTAGAAGT 57.662 40.909 0.00 0.00 0.00 3.01
2604 2814 5.674933 AAAGAAAAAGGCTGACGTAGAAG 57.325 39.130 0.00 0.00 0.00 2.85
2605 2815 5.277154 CGAAAAGAAAAAGGCTGACGTAGAA 60.277 40.000 0.00 0.00 0.00 2.10
2606 2816 4.210537 CGAAAAGAAAAAGGCTGACGTAGA 59.789 41.667 0.00 0.00 0.00 2.59
2607 2817 4.455124 CGAAAAGAAAAAGGCTGACGTAG 58.545 43.478 0.00 0.00 0.00 3.51
2608 2818 3.249080 CCGAAAAGAAAAAGGCTGACGTA 59.751 43.478 0.00 0.00 0.00 3.57
2609 2819 2.032924 CCGAAAAGAAAAAGGCTGACGT 59.967 45.455 0.00 0.00 0.00 4.34
2610 2820 2.650608 CCGAAAAGAAAAAGGCTGACG 58.349 47.619 0.00 0.00 0.00 4.35
2611 2821 2.394708 GCCGAAAAGAAAAAGGCTGAC 58.605 47.619 0.00 0.00 44.06 3.51
2612 2822 1.339929 GGCCGAAAAGAAAAAGGCTGA 59.660 47.619 4.73 0.00 46.44 4.26
2613 2823 1.783284 GGCCGAAAAGAAAAAGGCTG 58.217 50.000 4.73 0.00 46.44 4.85
2628 2838 3.361977 CCTGTGTTTTCCCGGCCG 61.362 66.667 21.04 21.04 0.00 6.13
2630 2840 4.038080 CGCCTGTGTTTTCCCGGC 62.038 66.667 0.00 0.00 37.40 6.13
2631 2841 4.038080 GCGCCTGTGTTTTCCCGG 62.038 66.667 0.00 0.00 0.00 5.73
2632 2842 4.383602 CGCGCCTGTGTTTTCCCG 62.384 66.667 0.00 0.00 0.00 5.14
2635 2845 1.644786 ATAGCCGCGCCTGTGTTTTC 61.645 55.000 0.00 0.00 0.00 2.29
2637 2847 2.046314 ATAGCCGCGCCTGTGTTT 60.046 55.556 0.00 0.00 0.00 2.83
2638 2848 2.819595 CATAGCCGCGCCTGTGTT 60.820 61.111 5.63 0.00 0.00 3.32
2662 2872 3.274288 GGGATGGTTTGTCTTGCTAGAG 58.726 50.000 0.00 0.00 0.00 2.43
2678 2888 2.171003 GTTGTTTCAGGGAAGGGGATG 58.829 52.381 0.00 0.00 0.00 3.51
2679 2889 1.786441 TGTTGTTTCAGGGAAGGGGAT 59.214 47.619 0.00 0.00 0.00 3.85
2687 2897 3.195396 CCCATTACCATGTTGTTTCAGGG 59.805 47.826 0.00 0.00 43.73 4.45
2690 2900 2.564947 GGCCCATTACCATGTTGTTTCA 59.435 45.455 0.00 0.00 0.00 2.69
2696 2906 1.756561 GCCGGCCCATTACCATGTT 60.757 57.895 18.11 0.00 0.00 2.71
2724 2934 3.794536 TGAAAAACGATCGAGCGAAAAG 58.205 40.909 31.66 0.00 34.83 2.27
2726 2936 4.391358 GAATGAAAAACGATCGAGCGAAA 58.609 39.130 31.66 8.23 34.83 3.46
2734 2944 6.832549 AAATCGAACGAATGAAAAACGATC 57.167 33.333 0.00 0.00 37.88 3.69
2753 2963 9.809096 AGAAAGAGAAAAGGAAGAAACAAAATC 57.191 29.630 0.00 0.00 0.00 2.17
2756 2966 9.996554 AAAAGAAAGAGAAAAGGAAGAAACAAA 57.003 25.926 0.00 0.00 0.00 2.83
2757 2967 9.996554 AAAAAGAAAGAGAAAAGGAAGAAACAA 57.003 25.926 0.00 0.00 0.00 2.83
2758 2968 9.639601 GAAAAAGAAAGAGAAAAGGAAGAAACA 57.360 29.630 0.00 0.00 0.00 2.83
2759 2969 9.862371 AGAAAAAGAAAGAGAAAAGGAAGAAAC 57.138 29.630 0.00 0.00 0.00 2.78
2833 3043 9.979270 CATTGCACAAACATTTTTACAAACTTA 57.021 25.926 0.00 0.00 0.00 2.24
2893 3107 6.843069 ACACTTTTTCCAAATATGTGTTGC 57.157 33.333 0.00 0.00 34.10 4.17
2913 3127 7.255242 ATTGTTGCTCCAATATGTGCTATACAC 60.255 37.037 0.35 0.00 43.27 2.90
2917 3131 5.595542 ACATTGTTGCTCCAATATGTGCTAT 59.404 36.000 1.85 0.00 33.53 2.97
2920 3134 4.107622 GACATTGTTGCTCCAATATGTGC 58.892 43.478 11.03 0.00 34.28 4.57
2922 3136 4.343231 TGGACATTGTTGCTCCAATATGT 58.657 39.130 0.00 7.78 35.65 2.29
2923 3137 4.987408 TGGACATTGTTGCTCCAATATG 57.013 40.909 0.00 0.00 33.37 1.78
2928 3142 3.196469 TGTTTTTGGACATTGTTGCTCCA 59.804 39.130 0.00 0.00 33.79 3.86
2929 3143 3.791245 TGTTTTTGGACATTGTTGCTCC 58.209 40.909 0.00 0.00 0.00 4.70
3057 3271 8.596271 TTTTCAAGTACATGTTCGATGTCTAA 57.404 30.769 2.30 0.00 33.76 2.10
3058 3272 8.596271 TTTTTCAAGTACATGTTCGATGTCTA 57.404 30.769 2.30 0.00 33.76 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.