Multiple sequence alignment - TraesCS5D01G256400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G256400 chr5D 100.000 4797 0 0 1 4797 362665994 362661198 0.000000e+00 8859.0
1 TraesCS5D01G256400 chr5D 81.944 288 47 5 4429 4713 33058422 33058137 6.200000e-59 239.0
2 TraesCS5D01G256400 chr5D 81.315 289 48 5 4429 4713 37037381 37037667 3.730000e-56 230.0
3 TraesCS5D01G256400 chr5A 88.531 1892 58 62 319 2132 463766734 463764924 0.000000e+00 2145.0
4 TraesCS5D01G256400 chr5A 92.214 1477 64 13 2961 4429 463763579 463762146 0.000000e+00 2043.0
5 TraesCS5D01G256400 chr5A 93.673 569 19 7 2399 2962 463764172 463763616 0.000000e+00 835.0
6 TraesCS5D01G256400 chr5A 92.204 372 20 3 4426 4797 463758562 463758200 7.120000e-143 518.0
7 TraesCS5D01G256400 chr5A 88.793 232 14 6 2177 2407 463764922 463764702 1.700000e-69 274.0
8 TraesCS5D01G256400 chr5A 85.784 204 26 2 1 204 529310146 529309946 3.760000e-51 213.0
9 TraesCS5D01G256400 chr5B 90.126 1661 68 33 587 2216 428963772 428962177 0.000000e+00 2071.0
10 TraesCS5D01G256400 chr5B 95.370 1080 46 4 3116 4194 428961157 428960081 0.000000e+00 1714.0
11 TraesCS5D01G256400 chr5B 85.125 800 52 18 2186 2962 428962151 428961396 0.000000e+00 756.0
12 TraesCS5D01G256400 chr5B 92.308 195 13 2 4546 4739 428958669 428958862 4.730000e-70 276.0
13 TraesCS5D01G256400 chr5B 87.374 198 19 5 4235 4429 428960082 428959888 6.250000e-54 222.0
14 TraesCS5D01G256400 chr5B 95.652 138 6 0 389 526 428964250 428964113 6.250000e-54 222.0
15 TraesCS5D01G256400 chr5B 80.795 302 37 10 1 292 321465303 321465013 2.910000e-52 217.0
16 TraesCS5D01G256400 chr5B 79.221 308 40 16 1 292 303435403 303435702 4.900000e-45 193.0
17 TraesCS5D01G256400 chr5B 75.738 305 53 12 1 294 548388293 548388587 3.010000e-27 134.0
18 TraesCS5D01G256400 chr5B 98.361 61 1 0 4424 4484 428959057 428958997 1.830000e-19 108.0
19 TraesCS5D01G256400 chr5B 86.667 60 8 0 4224 4283 263939385 263939444 3.100000e-07 67.6
20 TraesCS5D01G256400 chr6D 84.800 375 43 10 4431 4797 94282113 94282481 9.810000e-97 364.0
21 TraesCS5D01G256400 chr6D 100.000 29 0 0 267 295 393301156 393301128 2.000000e-03 54.7
22 TraesCS5D01G256400 chr4A 82.597 362 44 14 4424 4777 629959626 629959976 7.800000e-78 302.0
23 TraesCS5D01G256400 chr4A 92.958 71 5 0 1 71 737743639 737743569 2.360000e-18 104.0
24 TraesCS5D01G256400 chr4A 89.062 64 5 2 4735 4797 72879255 72879317 1.430000e-10 78.7
25 TraesCS5D01G256400 chr4A 79.381 97 16 3 1130 1224 75843218 75843124 1.110000e-06 65.8
26 TraesCS5D01G256400 chr4A 96.970 33 1 0 4047 4079 474757182 474757150 6.710000e-04 56.5
27 TraesCS5D01G256400 chr6B 83.699 319 46 5 4434 4748 288129329 288129013 3.630000e-76 296.0
28 TraesCS5D01G256400 chr6B 78.738 301 39 10 9 297 626399484 626399197 1.370000e-40 178.0
29 TraesCS5D01G256400 chr6B 88.462 104 11 1 1 103 586664990 586665093 1.810000e-24 124.0
30 TraesCS5D01G256400 chr6B 100.000 41 0 0 2971 3011 522637378 522637338 5.150000e-10 76.8
31 TraesCS5D01G256400 chr6B 95.455 44 2 0 4754 4797 288128920 288128877 2.400000e-08 71.3
32 TraesCS5D01G256400 chr2D 84.083 289 38 5 4418 4699 619259358 619259645 6.120000e-69 272.0
33 TraesCS5D01G256400 chr2B 85.019 267 37 3 4533 4797 675520898 675521163 7.910000e-68 268.0
34 TraesCS5D01G256400 chr3B 81.518 303 44 6 1 294 262181605 262181904 6.200000e-59 239.0
35 TraesCS5D01G256400 chr3B 90.789 76 6 1 772 846 438402784 438402859 3.050000e-17 100.0
36 TraesCS5D01G256400 chr3B 97.222 36 0 1 260 294 11475518 11475483 5.180000e-05 60.2
37 TraesCS5D01G256400 chr3D 80.984 305 43 11 1 294 528954208 528954508 1.340000e-55 228.0
38 TraesCS5D01G256400 chr3D 80.392 306 44 9 1 294 527521074 527520773 8.080000e-53 219.0
39 TraesCS5D01G256400 chr3D 77.852 149 22 6 155 294 587639573 587639719 1.110000e-11 82.4
40 TraesCS5D01G256400 chr7B 83.886 211 28 5 2 209 118256361 118256154 3.790000e-46 196.0
41 TraesCS5D01G256400 chr7B 77.857 140 23 8 1092 1227 503496261 503496396 3.980000e-11 80.5
42 TraesCS5D01G256400 chr4B 79.402 301 43 12 2 290 662539218 662539511 1.360000e-45 195.0
43 TraesCS5D01G256400 chr4B 100.000 32 0 0 1190 1221 484105791 484105760 5.180000e-05 60.2
44 TraesCS5D01G256400 chr4B 100.000 28 0 0 1190 1217 115101255 115101228 9.000000e-03 52.8
45 TraesCS5D01G256400 chr7A 77.705 305 54 9 1 294 660404976 660405277 1.770000e-39 174.0
46 TraesCS5D01G256400 chr1B 76.984 252 40 11 56 295 552946952 552947197 1.400000e-25 128.0
47 TraesCS5D01G256400 chr4D 87.500 80 10 0 218 297 106396948 106396869 5.110000e-15 93.5
48 TraesCS5D01G256400 chr4D 100.000 29 0 0 1193 1221 394379216 394379188 2.000000e-03 54.7
49 TraesCS5D01G256400 chr7D 94.286 35 2 0 4386 4420 535733853 535733819 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G256400 chr5D 362661198 362665994 4796 True 8859.000000 8859 100.000000 1 4797 1 chr5D.!!$R2 4796
1 TraesCS5D01G256400 chr5A 463758200 463766734 8534 True 1163.000000 2145 91.083000 319 4797 5 chr5A.!!$R2 4478
2 TraesCS5D01G256400 chr5B 428958997 428964250 5253 True 848.833333 2071 92.001333 389 4484 6 chr5B.!!$R2 4095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.036388 GCCCATCTCAAACGGACAGA 60.036 55.0 0.00 0.0 0.00 3.41 F
306 307 0.181350 GGCCTAATGGACTCACCCAG 59.819 60.0 0.00 0.0 39.97 4.45 F
794 1085 0.319211 CCGTAACTCGTTGAGCCACA 60.319 55.0 0.00 0.0 37.94 4.17 F
1331 1640 0.108615 CTCTGATCGGTTTCGGCTGT 60.109 55.0 0.42 0.0 36.95 4.40 F
2336 2744 0.250989 CCTTGCTCCCCGTAACCAAA 60.251 55.0 0.00 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1614 0.450583 CCGAAACCGATCAGAGACGA 59.549 55.0 0.00 0.00 0.00 4.20 R
1309 1615 1.140407 GCCGAAACCGATCAGAGACG 61.140 60.0 0.00 0.00 0.00 4.18 R
2313 2721 0.177373 GTTACGGGGAGCAAGGGTAG 59.823 60.0 0.00 0.00 0.00 3.18 R
2791 3737 0.385598 TCAGTGAGAAGACGAACGCG 60.386 55.0 3.53 3.53 44.79 6.01 R
3987 5056 0.607620 GCAAACCTTAATGCAGCCCA 59.392 50.0 0.00 0.00 42.12 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 7.837202 TTTGAGTGAATTAATATTCGGACGT 57.163 32.000 0.00 0.00 42.55 4.34
93 94 6.822073 TGAGTGAATTAATATTCGGACGTG 57.178 37.500 0.00 0.00 42.55 4.49
94 95 5.233476 TGAGTGAATTAATATTCGGACGTGC 59.767 40.000 0.00 0.00 42.55 5.34
95 96 5.113383 AGTGAATTAATATTCGGACGTGCA 58.887 37.500 8.11 0.00 42.55 4.57
96 97 5.583061 AGTGAATTAATATTCGGACGTGCAA 59.417 36.000 8.11 0.99 42.55 4.08
97 98 6.092944 AGTGAATTAATATTCGGACGTGCAAA 59.907 34.615 8.11 0.00 42.55 3.68
98 99 6.193959 GTGAATTAATATTCGGACGTGCAAAC 59.806 38.462 8.11 0.00 42.55 2.93
99 100 6.092944 TGAATTAATATTCGGACGTGCAAACT 59.907 34.615 8.11 0.00 42.55 2.66
100 101 5.866335 TTAATATTCGGACGTGCAAACTT 57.134 34.783 8.11 0.00 0.00 2.66
101 102 3.740044 ATATTCGGACGTGCAAACTTG 57.260 42.857 8.11 0.00 0.00 3.16
102 103 1.305201 ATTCGGACGTGCAAACTTGT 58.695 45.000 8.11 0.00 0.00 3.16
103 104 0.375454 TTCGGACGTGCAAACTTGTG 59.625 50.000 8.11 0.00 0.00 3.33
104 105 0.741574 TCGGACGTGCAAACTTGTGT 60.742 50.000 8.11 0.00 0.00 3.72
105 106 0.098025 CGGACGTGCAAACTTGTGTT 59.902 50.000 8.11 0.00 38.16 3.32
106 107 1.328069 CGGACGTGCAAACTTGTGTTA 59.672 47.619 8.11 0.00 34.96 2.41
107 108 2.223066 CGGACGTGCAAACTTGTGTTAA 60.223 45.455 8.11 0.00 34.96 2.01
108 109 3.728268 CGGACGTGCAAACTTGTGTTAAA 60.728 43.478 8.11 0.00 34.96 1.52
109 110 4.167268 GGACGTGCAAACTTGTGTTAAAA 58.833 39.130 0.63 0.00 34.96 1.52
110 111 4.030865 GGACGTGCAAACTTGTGTTAAAAC 59.969 41.667 0.63 0.00 34.96 2.43
111 112 4.547532 ACGTGCAAACTTGTGTTAAAACA 58.452 34.783 0.00 0.00 34.96 2.83
112 113 5.164954 ACGTGCAAACTTGTGTTAAAACAT 58.835 33.333 0.00 0.00 41.59 2.71
113 114 5.635700 ACGTGCAAACTTGTGTTAAAACATT 59.364 32.000 0.00 0.00 41.59 2.71
114 115 5.950924 CGTGCAAACTTGTGTTAAAACATTG 59.049 36.000 0.00 2.98 41.59 2.82
115 116 6.183360 CGTGCAAACTTGTGTTAAAACATTGA 60.183 34.615 12.72 0.00 41.59 2.57
116 117 7.463913 CGTGCAAACTTGTGTTAAAACATTGAT 60.464 33.333 12.72 0.00 41.59 2.57
117 118 8.812329 GTGCAAACTTGTGTTAAAACATTGATA 58.188 29.630 12.72 1.31 41.59 2.15
118 119 9.371136 TGCAAACTTGTGTTAAAACATTGATAA 57.629 25.926 12.72 0.00 41.59 1.75
147 148 8.454570 TGAATATATGTGCATATTGGCTATGG 57.545 34.615 0.00 0.00 38.14 2.74
148 149 8.054572 TGAATATATGTGCATATTGGCTATGGT 58.945 33.333 0.00 0.00 38.14 3.55
149 150 7.812690 ATATATGTGCATATTGGCTATGGTG 57.187 36.000 0.00 0.00 38.14 4.17
150 151 2.585330 TGTGCATATTGGCTATGGTGG 58.415 47.619 0.00 0.00 38.14 4.61
151 152 1.888512 GTGCATATTGGCTATGGTGGG 59.111 52.381 0.00 0.00 38.14 4.61
152 153 0.890683 GCATATTGGCTATGGTGGGC 59.109 55.000 0.00 0.00 38.14 5.36
153 154 1.822854 GCATATTGGCTATGGTGGGCA 60.823 52.381 0.00 0.00 38.14 5.36
154 155 2.165167 CATATTGGCTATGGTGGGCAG 58.835 52.381 0.00 0.00 40.22 4.85
155 156 0.478072 TATTGGCTATGGTGGGCAGG 59.522 55.000 0.00 0.00 40.22 4.85
156 157 1.288508 ATTGGCTATGGTGGGCAGGA 61.289 55.000 0.00 0.00 40.22 3.86
157 158 1.288508 TTGGCTATGGTGGGCAGGAT 61.289 55.000 0.00 0.00 40.22 3.24
158 159 1.228367 GGCTATGGTGGGCAGGATG 60.228 63.158 0.00 0.00 40.87 3.51
169 170 2.045045 CAGGATGCGGCCAAAGGA 60.045 61.111 2.24 0.00 0.00 3.36
170 171 1.454479 CAGGATGCGGCCAAAGGAT 60.454 57.895 2.24 0.00 0.00 3.24
171 172 1.454479 AGGATGCGGCCAAAGGATG 60.454 57.895 2.24 0.00 0.00 3.51
172 173 2.414594 GATGCGGCCAAAGGATGC 59.585 61.111 2.24 0.00 0.00 3.91
173 174 3.474230 GATGCGGCCAAAGGATGCG 62.474 63.158 2.24 0.00 0.00 4.73
175 176 4.179579 GCGGCCAAAGGATGCGTC 62.180 66.667 2.24 0.00 0.00 5.19
176 177 2.436646 CGGCCAAAGGATGCGTCT 60.437 61.111 2.24 0.00 0.00 4.18
177 178 2.753966 CGGCCAAAGGATGCGTCTG 61.754 63.158 2.24 0.00 0.00 3.51
178 179 2.486966 GCCAAAGGATGCGTCTGC 59.513 61.111 5.77 0.00 43.20 4.26
192 193 0.366871 GTCTGCATGTTAGACGCACG 59.633 55.000 13.86 0.00 35.68 5.34
193 194 0.735978 TCTGCATGTTAGACGCACGG 60.736 55.000 0.00 0.00 0.00 4.94
194 195 2.296692 CTGCATGTTAGACGCACGGC 62.297 60.000 0.00 0.00 0.00 5.68
195 196 3.089784 CATGTTAGACGCACGGCC 58.910 61.111 0.00 0.00 0.00 6.13
196 197 1.739929 CATGTTAGACGCACGGCCA 60.740 57.895 2.24 0.00 0.00 5.36
197 198 1.740296 ATGTTAGACGCACGGCCAC 60.740 57.895 2.24 0.00 0.00 5.01
198 199 3.116531 GTTAGACGCACGGCCACC 61.117 66.667 2.24 0.00 0.00 4.61
210 211 3.059386 GCCACCGCATCCCGAAAA 61.059 61.111 0.00 0.00 40.02 2.29
211 212 2.631580 GCCACCGCATCCCGAAAAA 61.632 57.895 0.00 0.00 40.02 1.94
226 227 2.772102 AAAAACCCTCCCATTGCCC 58.228 52.632 0.00 0.00 0.00 5.36
227 228 0.104725 AAAAACCCTCCCATTGCCCA 60.105 50.000 0.00 0.00 0.00 5.36
228 229 0.118952 AAAACCCTCCCATTGCCCAT 59.881 50.000 0.00 0.00 0.00 4.00
229 230 0.325577 AAACCCTCCCATTGCCCATC 60.326 55.000 0.00 0.00 0.00 3.51
230 231 1.224003 AACCCTCCCATTGCCCATCT 61.224 55.000 0.00 0.00 0.00 2.90
231 232 1.152368 CCCTCCCATTGCCCATCTC 59.848 63.158 0.00 0.00 0.00 2.75
232 233 1.648302 CCCTCCCATTGCCCATCTCA 61.648 60.000 0.00 0.00 0.00 3.27
233 234 0.259647 CCTCCCATTGCCCATCTCAA 59.740 55.000 0.00 0.00 0.00 3.02
234 235 1.342275 CCTCCCATTGCCCATCTCAAA 60.342 52.381 0.00 0.00 0.00 2.69
235 236 1.753073 CTCCCATTGCCCATCTCAAAC 59.247 52.381 0.00 0.00 0.00 2.93
236 237 0.457035 CCCATTGCCCATCTCAAACG 59.543 55.000 0.00 0.00 0.00 3.60
237 238 0.457035 CCATTGCCCATCTCAAACGG 59.543 55.000 0.00 0.00 0.00 4.44
238 239 1.462616 CATTGCCCATCTCAAACGGA 58.537 50.000 0.00 0.00 0.00 4.69
239 240 1.133025 CATTGCCCATCTCAAACGGAC 59.867 52.381 0.00 0.00 0.00 4.79
240 241 0.109532 TTGCCCATCTCAAACGGACA 59.890 50.000 0.00 0.00 0.00 4.02
241 242 0.321564 TGCCCATCTCAAACGGACAG 60.322 55.000 0.00 0.00 0.00 3.51
242 243 0.036388 GCCCATCTCAAACGGACAGA 60.036 55.000 0.00 0.00 0.00 3.41
243 244 1.610624 GCCCATCTCAAACGGACAGAA 60.611 52.381 0.00 0.00 0.00 3.02
244 245 2.941415 GCCCATCTCAAACGGACAGAAT 60.941 50.000 0.00 0.00 0.00 2.40
245 246 3.347216 CCCATCTCAAACGGACAGAATT 58.653 45.455 0.00 0.00 0.00 2.17
246 247 3.375299 CCCATCTCAAACGGACAGAATTC 59.625 47.826 0.00 0.00 0.00 2.17
247 248 4.002982 CCATCTCAAACGGACAGAATTCA 58.997 43.478 8.44 0.00 0.00 2.57
248 249 4.093998 CCATCTCAAACGGACAGAATTCAG 59.906 45.833 8.44 1.65 0.00 3.02
249 250 4.600692 TCTCAAACGGACAGAATTCAGA 57.399 40.909 8.44 0.00 0.00 3.27
250 251 5.152623 TCTCAAACGGACAGAATTCAGAT 57.847 39.130 8.44 0.00 0.00 2.90
251 252 6.280855 TCTCAAACGGACAGAATTCAGATA 57.719 37.500 8.44 0.00 0.00 1.98
252 253 6.697395 TCTCAAACGGACAGAATTCAGATAA 58.303 36.000 8.44 0.00 0.00 1.75
253 254 7.158697 TCTCAAACGGACAGAATTCAGATAAA 58.841 34.615 8.44 0.00 0.00 1.40
254 255 7.659799 TCTCAAACGGACAGAATTCAGATAAAA 59.340 33.333 8.44 0.00 0.00 1.52
255 256 7.581476 TCAAACGGACAGAATTCAGATAAAAC 58.419 34.615 8.44 0.00 0.00 2.43
256 257 5.779806 ACGGACAGAATTCAGATAAAACG 57.220 39.130 8.44 3.92 0.00 3.60
257 258 5.475719 ACGGACAGAATTCAGATAAAACGA 58.524 37.500 8.44 0.00 0.00 3.85
258 259 5.929992 ACGGACAGAATTCAGATAAAACGAA 59.070 36.000 8.44 0.00 0.00 3.85
259 260 6.128634 ACGGACAGAATTCAGATAAAACGAAC 60.129 38.462 8.44 0.00 0.00 3.95
260 261 6.128661 CGGACAGAATTCAGATAAAACGAACA 60.129 38.462 8.44 0.00 0.00 3.18
261 262 7.413000 CGGACAGAATTCAGATAAAACGAACAT 60.413 37.037 8.44 0.00 0.00 2.71
262 263 7.905493 GGACAGAATTCAGATAAAACGAACATC 59.095 37.037 8.44 0.00 0.00 3.06
263 264 7.752695 ACAGAATTCAGATAAAACGAACATCC 58.247 34.615 8.44 0.00 0.00 3.51
264 265 7.390440 ACAGAATTCAGATAAAACGAACATCCA 59.610 33.333 8.44 0.00 0.00 3.41
265 266 8.400947 CAGAATTCAGATAAAACGAACATCCAT 58.599 33.333 8.44 0.00 0.00 3.41
266 267 8.960591 AGAATTCAGATAAAACGAACATCCATT 58.039 29.630 8.44 0.00 0.00 3.16
267 268 9.573133 GAATTCAGATAAAACGAACATCCATTT 57.427 29.630 0.00 0.00 0.00 2.32
270 271 8.208718 TCAGATAAAACGAACATCCATTTAGG 57.791 34.615 0.00 0.00 39.47 2.69
271 272 7.282224 TCAGATAAAACGAACATCCATTTAGGG 59.718 37.037 0.00 0.00 38.24 3.53
272 273 7.067008 CAGATAAAACGAACATCCATTTAGGGT 59.933 37.037 0.00 0.00 38.24 4.34
273 274 5.638596 AAAACGAACATCCATTTAGGGTC 57.361 39.130 0.00 0.00 38.24 4.46
274 275 2.901249 ACGAACATCCATTTAGGGTCG 58.099 47.619 0.00 0.00 38.24 4.79
275 276 2.235402 ACGAACATCCATTTAGGGTCGT 59.765 45.455 0.00 0.00 36.73 4.34
276 277 2.607635 CGAACATCCATTTAGGGTCGTG 59.392 50.000 0.00 0.00 38.24 4.35
277 278 2.038387 ACATCCATTTAGGGTCGTGC 57.962 50.000 0.00 0.00 38.24 5.34
278 279 0.937304 CATCCATTTAGGGTCGTGCG 59.063 55.000 0.00 0.00 38.24 5.34
279 280 0.814010 ATCCATTTAGGGTCGTGCGC 60.814 55.000 0.00 0.00 38.24 6.09
280 281 1.449601 CCATTTAGGGTCGTGCGCT 60.450 57.895 9.73 5.00 43.25 5.92
281 282 1.705337 CCATTTAGGGTCGTGCGCTG 61.705 60.000 9.73 0.40 40.80 5.18
282 283 1.449601 ATTTAGGGTCGTGCGCTGG 60.450 57.895 9.73 0.00 40.80 4.85
283 284 1.895020 ATTTAGGGTCGTGCGCTGGA 61.895 55.000 9.73 2.32 40.80 3.86
284 285 2.501223 TTTAGGGTCGTGCGCTGGAG 62.501 60.000 9.73 0.00 40.80 3.86
286 287 4.681978 GGGTCGTGCGCTGGAGTT 62.682 66.667 9.73 0.00 0.00 3.01
287 288 3.414700 GGTCGTGCGCTGGAGTTG 61.415 66.667 9.73 0.00 0.00 3.16
288 289 3.414700 GTCGTGCGCTGGAGTTGG 61.415 66.667 9.73 0.00 0.00 3.77
292 293 3.318384 TGCGCTGGAGTTGGCCTA 61.318 61.111 9.73 0.00 0.00 3.93
293 294 2.046314 GCGCTGGAGTTGGCCTAA 60.046 61.111 3.32 0.00 0.00 2.69
294 295 1.452108 GCGCTGGAGTTGGCCTAAT 60.452 57.895 3.32 0.00 0.00 1.73
295 296 1.718757 GCGCTGGAGTTGGCCTAATG 61.719 60.000 3.32 0.00 0.00 1.90
296 297 1.097547 CGCTGGAGTTGGCCTAATGG 61.098 60.000 3.32 0.00 0.00 3.16
297 298 0.255890 GCTGGAGTTGGCCTAATGGA 59.744 55.000 3.32 0.00 34.57 3.41
298 299 2.019156 GCTGGAGTTGGCCTAATGGAC 61.019 57.143 3.32 0.00 43.36 4.02
299 300 1.561542 CTGGAGTTGGCCTAATGGACT 59.438 52.381 3.32 0.00 43.49 3.85
300 301 1.559682 TGGAGTTGGCCTAATGGACTC 59.440 52.381 3.32 7.73 43.49 3.36
301 302 1.559682 GGAGTTGGCCTAATGGACTCA 59.440 52.381 3.32 0.00 43.49 3.41
302 303 2.633488 GAGTTGGCCTAATGGACTCAC 58.367 52.381 3.32 0.00 43.49 3.51
303 304 1.282157 AGTTGGCCTAATGGACTCACC 59.718 52.381 3.32 0.00 43.49 4.02
304 305 0.623723 TTGGCCTAATGGACTCACCC 59.376 55.000 3.32 0.00 43.49 4.61
305 306 0.548926 TGGCCTAATGGACTCACCCA 60.549 55.000 3.32 0.00 43.49 4.51
306 307 0.181350 GGCCTAATGGACTCACCCAG 59.819 60.000 0.00 0.00 39.97 4.45
307 308 1.204146 GCCTAATGGACTCACCCAGA 58.796 55.000 0.00 0.00 39.97 3.86
308 309 1.559682 GCCTAATGGACTCACCCAGAA 59.440 52.381 0.00 0.00 39.97 3.02
309 310 2.173569 GCCTAATGGACTCACCCAGAAT 59.826 50.000 0.00 0.00 39.97 2.40
310 311 3.813443 CCTAATGGACTCACCCAGAATG 58.187 50.000 0.00 0.00 39.97 2.67
311 312 3.200825 CCTAATGGACTCACCCAGAATGT 59.799 47.826 0.00 0.00 39.97 2.71
312 313 3.814504 AATGGACTCACCCAGAATGTT 57.185 42.857 0.00 0.00 39.97 2.71
313 314 2.566833 TGGACTCACCCAGAATGTTG 57.433 50.000 0.00 0.00 38.00 3.33
314 315 1.774254 TGGACTCACCCAGAATGTTGT 59.226 47.619 0.00 0.00 38.00 3.32
315 316 2.976185 TGGACTCACCCAGAATGTTGTA 59.024 45.455 0.00 0.00 38.00 2.41
316 317 3.244422 TGGACTCACCCAGAATGTTGTAC 60.244 47.826 0.00 0.00 38.00 2.90
317 318 3.008049 GGACTCACCCAGAATGTTGTACT 59.992 47.826 0.00 0.00 0.00 2.73
323 324 6.014647 TCACCCAGAATGTTGTACTAGTACT 58.985 40.000 28.56 12.19 37.00 2.73
345 346 9.326413 GTACTAGTCAAAATAGTATGCCATTGT 57.674 33.333 0.00 0.00 37.87 2.71
486 488 2.347490 GAGTGGATGCACCGGTGT 59.653 61.111 33.92 17.27 42.61 4.16
551 811 4.673061 CGCATGACTCTACGAGAAGAAAGT 60.673 45.833 0.00 0.00 33.32 2.66
593 853 4.263209 CCAAACCACAGCGCGCAA 62.263 61.111 35.10 0.00 0.00 4.85
675 958 1.739667 CGTGCCATCCTATCACCGA 59.260 57.895 0.00 0.00 0.00 4.69
709 997 1.292061 CCGCCGGATATTTTTGACGA 58.708 50.000 5.05 0.00 0.00 4.20
780 1071 1.597797 CGCACCTCACCTACCCGTAA 61.598 60.000 0.00 0.00 0.00 3.18
784 1075 0.737219 CCTCACCTACCCGTAACTCG 59.263 60.000 0.00 0.00 39.52 4.18
785 1076 1.457346 CTCACCTACCCGTAACTCGT 58.543 55.000 0.00 0.00 37.94 4.18
786 1077 1.815003 CTCACCTACCCGTAACTCGTT 59.185 52.381 0.00 0.00 37.94 3.85
787 1078 1.541147 TCACCTACCCGTAACTCGTTG 59.459 52.381 0.00 0.00 37.94 4.10
788 1079 1.541147 CACCTACCCGTAACTCGTTGA 59.459 52.381 0.00 0.00 37.94 3.18
789 1080 1.815003 ACCTACCCGTAACTCGTTGAG 59.185 52.381 0.00 0.00 37.94 3.02
790 1081 1.468736 CCTACCCGTAACTCGTTGAGC 60.469 57.143 0.00 0.00 37.94 4.26
791 1082 0.527565 TACCCGTAACTCGTTGAGCC 59.472 55.000 0.00 0.00 37.94 4.70
792 1083 1.290955 CCCGTAACTCGTTGAGCCA 59.709 57.895 0.00 0.00 37.94 4.75
793 1084 1.012486 CCCGTAACTCGTTGAGCCAC 61.012 60.000 0.00 0.00 37.94 5.01
794 1085 0.319211 CCGTAACTCGTTGAGCCACA 60.319 55.000 0.00 0.00 37.94 4.17
795 1086 1.060713 CGTAACTCGTTGAGCCACAG 58.939 55.000 0.00 0.00 32.04 3.66
796 1087 0.790814 GTAACTCGTTGAGCCACAGC 59.209 55.000 0.00 0.00 40.32 4.40
797 1088 0.320421 TAACTCGTTGAGCCACAGCC 60.320 55.000 0.00 0.00 41.25 4.85
798 1089 2.031012 CTCGTTGAGCCACAGCCA 59.969 61.111 0.00 0.00 41.25 4.75
799 1090 2.280797 TCGTTGAGCCACAGCCAC 60.281 61.111 0.00 0.00 41.25 5.01
800 1091 3.357079 CGTTGAGCCACAGCCACC 61.357 66.667 0.00 0.00 41.25 4.61
801 1092 2.113986 GTTGAGCCACAGCCACCT 59.886 61.111 0.00 0.00 41.25 4.00
802 1093 1.968540 GTTGAGCCACAGCCACCTC 60.969 63.158 0.00 0.00 41.25 3.85
1308 1614 4.363990 CGCGTGGTGGTCTGAGCT 62.364 66.667 8.47 0.00 0.00 4.09
1309 1615 2.433318 GCGTGGTGGTCTGAGCTC 60.433 66.667 6.82 6.82 0.00 4.09
1331 1640 0.108615 CTCTGATCGGTTTCGGCTGT 60.109 55.000 0.42 0.00 36.95 4.40
1462 1780 2.185608 GAGGTCAAGAGCGCCCTC 59.814 66.667 11.58 11.58 36.98 4.30
1546 1864 2.570181 GTGCTGGTACGTACGCCT 59.430 61.111 16.72 0.00 0.00 5.52
1946 2274 0.692476 TGGCTGGCAACACTAGTCAT 59.308 50.000 0.00 0.00 46.17 3.06
2132 2481 4.614993 CGGTAACAACTTGCAGTATTTGGG 60.615 45.833 0.00 0.00 0.00 4.12
2133 2482 4.521256 GGTAACAACTTGCAGTATTTGGGA 59.479 41.667 0.00 0.00 0.00 4.37
2134 2483 5.010213 GGTAACAACTTGCAGTATTTGGGAA 59.990 40.000 0.00 0.00 0.00 3.97
2135 2484 4.853924 ACAACTTGCAGTATTTGGGAAG 57.146 40.909 0.00 0.00 38.29 3.46
2136 2485 4.215109 ACAACTTGCAGTATTTGGGAAGT 58.785 39.130 0.00 0.00 45.81 3.01
2138 2487 4.853924 ACTTGCAGTATTTGGGAAGTTG 57.146 40.909 0.00 0.00 42.01 3.16
2139 2488 3.573967 ACTTGCAGTATTTGGGAAGTTGG 59.426 43.478 0.00 0.00 42.01 3.77
2140 2489 3.517296 TGCAGTATTTGGGAAGTTGGA 57.483 42.857 0.00 0.00 0.00 3.53
2141 2490 3.420893 TGCAGTATTTGGGAAGTTGGAG 58.579 45.455 0.00 0.00 0.00 3.86
2142 2491 3.181434 TGCAGTATTTGGGAAGTTGGAGT 60.181 43.478 0.00 0.00 0.00 3.85
2143 2492 4.042311 TGCAGTATTTGGGAAGTTGGAGTA 59.958 41.667 0.00 0.00 0.00 2.59
2174 2523 3.559238 AATAGCAACCAAGAAACGCAG 57.441 42.857 0.00 0.00 0.00 5.18
2222 2625 1.686115 GGCAGCATGTTAATGTCCCCT 60.686 52.381 0.00 0.00 39.31 4.79
2224 2627 2.099756 GCAGCATGTTAATGTCCCCTTC 59.900 50.000 0.00 0.00 39.31 3.46
2242 2646 8.367911 GTCCCCTTCTTAATGTTTTCTGAAATT 58.632 33.333 3.31 0.00 0.00 1.82
2335 2743 1.377229 CCTTGCTCCCCGTAACCAA 59.623 57.895 0.00 0.00 0.00 3.67
2336 2744 0.250989 CCTTGCTCCCCGTAACCAAA 60.251 55.000 0.00 0.00 0.00 3.28
2337 2745 0.879090 CTTGCTCCCCGTAACCAAAC 59.121 55.000 0.00 0.00 0.00 2.93
2338 2746 0.537828 TTGCTCCCCGTAACCAAACC 60.538 55.000 0.00 0.00 0.00 3.27
2339 2747 1.073548 GCTCCCCGTAACCAAACCA 59.926 57.895 0.00 0.00 0.00 3.67
2351 2759 1.005450 ACCAAACCACCACACTGAACT 59.995 47.619 0.00 0.00 0.00 3.01
2363 2771 3.130516 CACACTGAACTAGAATCGGGCTA 59.869 47.826 0.00 0.00 0.00 3.93
2412 3358 1.264749 ATCCTGCCGTGCCTAGACAA 61.265 55.000 0.00 0.00 0.00 3.18
2567 3513 1.885388 CGTCCGGTGCTGTCAAACA 60.885 57.895 0.00 0.00 0.00 2.83
2751 3697 1.848652 TTAGTACTTCGCCTGCTCCT 58.151 50.000 0.00 0.00 0.00 3.69
2753 3699 0.533032 AGTACTTCGCCTGCTCCTTC 59.467 55.000 0.00 0.00 0.00 3.46
2767 3713 2.635305 CCTTCGTTGTTTTGCGCGC 61.635 57.895 27.26 27.26 0.00 6.86
2768 3714 2.960351 CTTCGTTGTTTTGCGCGCG 61.960 57.895 28.44 28.44 0.00 6.86
2769 3715 3.720106 TTCGTTGTTTTGCGCGCGT 62.720 52.632 32.35 0.00 0.00 6.01
2770 3716 4.016558 CGTTGTTTTGCGCGCGTG 62.017 61.111 32.35 16.86 0.00 5.34
2771 3717 2.947109 GTTGTTTTGCGCGCGTGT 60.947 55.556 32.35 0.00 0.00 4.49
2847 3803 1.106285 GATTGGTTCAGGCCATGGAC 58.894 55.000 18.40 14.73 38.48 4.02
2894 3850 2.554032 AGCTCTGTTTCCATTTTGTCGG 59.446 45.455 0.00 0.00 0.00 4.79
2898 3854 2.794350 CTGTTTCCATTTTGTCGGTTGC 59.206 45.455 0.00 0.00 0.00 4.17
2913 3869 1.468736 GGTTGCTACGTTCTCGGTAGG 60.469 57.143 0.00 0.00 41.85 3.18
2914 3870 1.470098 GTTGCTACGTTCTCGGTAGGA 59.530 52.381 0.00 0.00 41.85 2.94
2915 3871 1.376543 TGCTACGTTCTCGGTAGGAG 58.623 55.000 0.00 0.00 44.58 3.69
2916 3872 1.339438 TGCTACGTTCTCGGTAGGAGT 60.339 52.381 0.00 0.00 43.60 3.85
2917 3873 2.093500 TGCTACGTTCTCGGTAGGAGTA 60.093 50.000 0.00 0.00 43.60 2.59
2918 3874 2.543430 GCTACGTTCTCGGTAGGAGTAG 59.457 54.545 0.00 0.00 43.60 2.57
2926 3882 2.745281 CTCGGTAGGAGTAGCATAGAGC 59.255 54.545 0.00 0.00 39.87 4.09
2948 3904 3.829026 CTGATAGAGGGGTCGATTCATCA 59.171 47.826 0.00 0.00 0.00 3.07
2965 3960 7.649705 CGATTCATCAAGTACAGTAAGCACTAT 59.350 37.037 0.00 0.00 32.21 2.12
2967 3962 9.672673 ATTCATCAAGTACAGTAAGCACTATTT 57.327 29.630 0.00 0.00 32.21 1.40
3035 4037 6.860023 CAGAAAGTGAAAAATGCAGGAGTTAG 59.140 38.462 0.00 0.00 0.00 2.34
3036 4038 4.773323 AGTGAAAAATGCAGGAGTTAGC 57.227 40.909 0.00 0.00 0.00 3.09
3051 4119 3.412386 AGTTAGCAGGTTAACTTGGCAG 58.588 45.455 18.26 0.00 40.11 4.85
3065 4133 6.610075 AACTTGGCAGGTTTTGATTGATAT 57.390 33.333 9.43 0.00 0.00 1.63
3066 4134 7.716799 AACTTGGCAGGTTTTGATTGATATA 57.283 32.000 9.43 0.00 0.00 0.86
3102 4170 9.676195 CAATACAACATCAACAACAACAATAGA 57.324 29.630 0.00 0.00 0.00 1.98
3104 4172 7.985634 ACAACATCAACAACAACAATAGAAC 57.014 32.000 0.00 0.00 0.00 3.01
3105 4173 7.771183 ACAACATCAACAACAACAATAGAACT 58.229 30.769 0.00 0.00 0.00 3.01
3106 4174 8.250332 ACAACATCAACAACAACAATAGAACTT 58.750 29.630 0.00 0.00 0.00 2.66
3107 4175 8.745837 CAACATCAACAACAACAATAGAACTTC 58.254 33.333 0.00 0.00 0.00 3.01
3108 4176 7.995289 ACATCAACAACAACAATAGAACTTCA 58.005 30.769 0.00 0.00 0.00 3.02
3109 4177 8.465999 ACATCAACAACAACAATAGAACTTCAA 58.534 29.630 0.00 0.00 0.00 2.69
3110 4178 9.299963 CATCAACAACAACAATAGAACTTCAAA 57.700 29.630 0.00 0.00 0.00 2.69
3111 4179 9.868277 ATCAACAACAACAATAGAACTTCAAAA 57.132 25.926 0.00 0.00 0.00 2.44
3112 4180 9.698309 TCAACAACAACAATAGAACTTCAAAAA 57.302 25.926 0.00 0.00 0.00 1.94
3167 4235 8.924511 TTGACTCTGAATTGTTTATTTCCTCT 57.075 30.769 0.00 0.00 0.00 3.69
3987 5056 3.624777 CCTCTGGTACTTTGATTGCCAT 58.375 45.455 0.00 0.00 0.00 4.40
3988 5057 3.379372 CCTCTGGTACTTTGATTGCCATG 59.621 47.826 0.00 0.00 0.00 3.66
4027 5096 6.409524 TGCTTCTTTGTTGATTCTCCAAAT 57.590 33.333 0.00 0.00 0.00 2.32
4064 5137 3.248125 GTGCAAGATGCTTAGAGAGATGC 59.752 47.826 3.78 0.00 45.31 3.91
4124 5197 4.832590 TGAGAGTTATAGAACTAGCGCC 57.167 45.455 2.29 0.00 46.23 6.53
4143 5216 3.130633 GCCCAATGTTTCAGTTTGGTTC 58.869 45.455 0.00 0.00 38.58 3.62
4146 5219 5.528870 CCCAATGTTTCAGTTTGGTTCTAC 58.471 41.667 0.00 0.00 38.58 2.59
4155 5228 6.677781 TCAGTTTGGTTCTACAACTTTGAG 57.322 37.500 0.00 0.00 32.50 3.02
4191 5264 8.029642 TGCAGTAACTGAAATTCTACTTAAGC 57.970 34.615 1.29 0.00 32.44 3.09
4202 5275 4.976224 TCTACTTAAGCGTGCAGATACA 57.024 40.909 1.29 0.00 0.00 2.29
4203 5276 4.921547 TCTACTTAAGCGTGCAGATACAG 58.078 43.478 1.29 0.00 0.00 2.74
4207 5280 1.714794 AAGCGTGCAGATACAGTCAC 58.285 50.000 0.00 0.00 0.00 3.67
4210 5283 1.798223 GCGTGCAGATACAGTCACAAA 59.202 47.619 0.00 0.00 0.00 2.83
4212 5285 2.799978 CGTGCAGATACAGTCACAAACA 59.200 45.455 0.00 0.00 0.00 2.83
4222 5295 4.713553 ACAGTCACAAACATGTATGTGGA 58.286 39.130 0.00 0.00 45.41 4.02
4223 5296 4.515191 ACAGTCACAAACATGTATGTGGAC 59.485 41.667 0.00 4.21 45.41 4.02
4256 5329 2.829384 GGCCCCACCTGTCACTGAA 61.829 63.158 0.00 0.00 34.51 3.02
4263 5336 2.290514 CCACCTGTCACTGAATGATGGT 60.291 50.000 0.00 0.00 43.53 3.55
4270 5343 1.135199 CACTGAATGATGGTGCTTGGC 60.135 52.381 0.00 0.00 0.00 4.52
4336 5410 5.446143 AAAAAGCCAAACATCGTGACATA 57.554 34.783 0.00 0.00 0.00 2.29
4354 5428 5.163258 TGACATATTTTTGCACAAAACCCCT 60.163 36.000 8.01 0.00 39.70 4.79
4355 5429 5.304778 ACATATTTTTGCACAAAACCCCTC 58.695 37.500 8.01 0.00 39.70 4.30
4356 5430 3.922171 ATTTTTGCACAAAACCCCTCA 57.078 38.095 8.01 0.00 39.70 3.86
4357 5431 3.922171 TTTTTGCACAAAACCCCTCAT 57.078 38.095 8.01 0.00 39.70 2.90
4358 5432 5.559148 ATTTTTGCACAAAACCCCTCATA 57.441 34.783 8.01 0.00 39.70 2.15
4359 5433 5.559148 TTTTTGCACAAAACCCCTCATAT 57.441 34.783 8.01 0.00 39.70 1.78
4404 5479 8.841300 GTCAATCACTGTACTACTCATAGATGA 58.159 37.037 0.00 0.00 35.16 2.92
4439 9238 9.677567 GCACAAAAAGTTAGAATAAGTCATGAA 57.322 29.630 0.00 0.00 0.00 2.57
4510 9309 6.674066 TGTTTTCCTCATTCCGTACAATTTC 58.326 36.000 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.537192 ACGTCCGAATATTAATTCACTCAAATA 57.463 29.630 0.00 0.00 41.44 1.40
67 68 8.335356 CACGTCCGAATATTAATTCACTCAAAT 58.665 33.333 0.00 0.00 41.44 2.32
68 69 7.675403 GCACGTCCGAATATTAATTCACTCAAA 60.675 37.037 0.00 0.00 41.44 2.69
69 70 6.237996 GCACGTCCGAATATTAATTCACTCAA 60.238 38.462 0.00 0.00 41.44 3.02
70 71 5.233476 GCACGTCCGAATATTAATTCACTCA 59.767 40.000 0.00 0.00 41.44 3.41
71 72 5.233476 TGCACGTCCGAATATTAATTCACTC 59.767 40.000 0.00 0.00 41.44 3.51
72 73 5.113383 TGCACGTCCGAATATTAATTCACT 58.887 37.500 0.00 0.00 41.44 3.41
73 74 5.398176 TGCACGTCCGAATATTAATTCAC 57.602 39.130 0.00 0.00 41.44 3.18
74 75 6.092944 AGTTTGCACGTCCGAATATTAATTCA 59.907 34.615 0.00 0.00 41.44 2.57
75 76 6.483687 AGTTTGCACGTCCGAATATTAATTC 58.516 36.000 0.00 0.00 38.53 2.17
76 77 6.431198 AGTTTGCACGTCCGAATATTAATT 57.569 33.333 0.00 0.00 0.00 1.40
77 78 6.128117 ACAAGTTTGCACGTCCGAATATTAAT 60.128 34.615 0.00 0.00 0.00 1.40
78 79 5.179742 ACAAGTTTGCACGTCCGAATATTAA 59.820 36.000 0.00 0.00 0.00 1.40
79 80 4.691685 ACAAGTTTGCACGTCCGAATATTA 59.308 37.500 0.00 0.00 0.00 0.98
80 81 3.500680 ACAAGTTTGCACGTCCGAATATT 59.499 39.130 0.00 0.00 0.00 1.28
81 82 3.071479 ACAAGTTTGCACGTCCGAATAT 58.929 40.909 0.00 0.00 0.00 1.28
82 83 2.222213 CACAAGTTTGCACGTCCGAATA 59.778 45.455 0.00 0.00 0.00 1.75
83 84 1.002900 CACAAGTTTGCACGTCCGAAT 60.003 47.619 0.00 0.00 0.00 3.34
84 85 0.375454 CACAAGTTTGCACGTCCGAA 59.625 50.000 0.00 0.00 0.00 4.30
85 86 0.741574 ACACAAGTTTGCACGTCCGA 60.742 50.000 0.00 0.00 0.00 4.55
86 87 0.098025 AACACAAGTTTGCACGTCCG 59.902 50.000 0.00 0.00 33.11 4.79
87 88 3.408288 TTAACACAAGTTTGCACGTCC 57.592 42.857 0.00 0.00 39.15 4.79
88 89 4.617645 TGTTTTAACACAAGTTTGCACGTC 59.382 37.500 0.00 0.00 39.15 4.34
89 90 4.547532 TGTTTTAACACAAGTTTGCACGT 58.452 34.783 0.00 0.00 39.15 4.49
90 91 5.694674 ATGTTTTAACACAAGTTTGCACG 57.305 34.783 0.00 0.00 42.51 5.34
91 92 7.054855 TCAATGTTTTAACACAAGTTTGCAC 57.945 32.000 0.00 0.00 42.51 4.57
92 93 7.840342 ATCAATGTTTTAACACAAGTTTGCA 57.160 28.000 0.00 0.00 42.51 4.08
121 122 9.074576 CCATAGCCAATATGCACATATATTCAT 57.925 33.333 3.65 0.00 40.10 2.57
122 123 8.054572 ACCATAGCCAATATGCACATATATTCA 58.945 33.333 3.65 0.00 40.10 2.57
123 124 8.347771 CACCATAGCCAATATGCACATATATTC 58.652 37.037 3.65 0.00 40.10 1.75
124 125 7.286087 CCACCATAGCCAATATGCACATATATT 59.714 37.037 3.65 0.00 40.10 1.28
125 126 6.774170 CCACCATAGCCAATATGCACATATAT 59.226 38.462 3.65 0.00 40.10 0.86
126 127 6.121590 CCACCATAGCCAATATGCACATATA 58.878 40.000 3.65 0.00 40.10 0.86
127 128 4.951715 CCACCATAGCCAATATGCACATAT 59.048 41.667 0.00 0.00 40.10 1.78
128 129 4.334552 CCACCATAGCCAATATGCACATA 58.665 43.478 0.00 0.00 40.10 2.29
129 130 3.159472 CCACCATAGCCAATATGCACAT 58.841 45.455 0.00 0.00 40.10 3.21
130 131 2.585330 CCACCATAGCCAATATGCACA 58.415 47.619 0.00 0.00 40.10 4.57
131 132 1.888512 CCCACCATAGCCAATATGCAC 59.111 52.381 0.00 0.00 40.10 4.57
132 133 1.822854 GCCCACCATAGCCAATATGCA 60.823 52.381 0.00 0.00 40.10 3.96
133 134 0.890683 GCCCACCATAGCCAATATGC 59.109 55.000 0.00 0.00 40.10 3.14
134 135 2.165167 CTGCCCACCATAGCCAATATG 58.835 52.381 0.00 0.00 40.96 1.78
135 136 1.076024 CCTGCCCACCATAGCCAATAT 59.924 52.381 0.00 0.00 0.00 1.28
136 137 0.478072 CCTGCCCACCATAGCCAATA 59.522 55.000 0.00 0.00 0.00 1.90
137 138 1.231068 CCTGCCCACCATAGCCAAT 59.769 57.895 0.00 0.00 0.00 3.16
138 139 1.288508 ATCCTGCCCACCATAGCCAA 61.289 55.000 0.00 0.00 0.00 4.52
139 140 1.697394 ATCCTGCCCACCATAGCCA 60.697 57.895 0.00 0.00 0.00 4.75
140 141 1.228367 CATCCTGCCCACCATAGCC 60.228 63.158 0.00 0.00 0.00 3.93
141 142 1.900498 GCATCCTGCCCACCATAGC 60.900 63.158 0.00 0.00 37.42 2.97
142 143 1.598962 CGCATCCTGCCCACCATAG 60.599 63.158 0.00 0.00 41.12 2.23
143 144 2.510411 CGCATCCTGCCCACCATA 59.490 61.111 0.00 0.00 41.12 2.74
144 145 4.511246 CCGCATCCTGCCCACCAT 62.511 66.667 0.00 0.00 41.12 3.55
151 152 3.830192 CCTTTGGCCGCATCCTGC 61.830 66.667 0.00 0.00 40.69 4.85
152 153 1.454479 ATCCTTTGGCCGCATCCTG 60.454 57.895 0.00 0.00 0.00 3.86
153 154 1.454479 CATCCTTTGGCCGCATCCT 60.454 57.895 0.00 0.00 0.00 3.24
154 155 3.122850 CATCCTTTGGCCGCATCC 58.877 61.111 0.00 0.00 0.00 3.51
155 156 2.414594 GCATCCTTTGGCCGCATC 59.585 61.111 0.00 0.00 0.00 3.91
156 157 3.520862 CGCATCCTTTGGCCGCAT 61.521 61.111 0.00 0.00 0.00 4.73
158 159 4.179579 GACGCATCCTTTGGCCGC 62.180 66.667 0.00 0.00 0.00 6.53
159 160 2.436646 AGACGCATCCTTTGGCCG 60.437 61.111 0.00 0.00 0.00 6.13
160 161 3.056313 GCAGACGCATCCTTTGGCC 62.056 63.158 0.00 0.00 38.36 5.36
161 162 2.334946 TGCAGACGCATCCTTTGGC 61.335 57.895 0.00 0.00 45.36 4.52
162 163 3.985877 TGCAGACGCATCCTTTGG 58.014 55.556 0.00 0.00 45.36 3.28
176 177 2.387445 GCCGTGCGTCTAACATGCA 61.387 57.895 0.00 0.00 45.34 3.96
177 178 2.399611 GCCGTGCGTCTAACATGC 59.600 61.111 0.00 0.00 37.56 4.06
178 179 1.739929 TGGCCGTGCGTCTAACATG 60.740 57.895 0.00 0.00 0.00 3.21
179 180 1.740296 GTGGCCGTGCGTCTAACAT 60.740 57.895 0.00 0.00 0.00 2.71
180 181 2.356553 GTGGCCGTGCGTCTAACA 60.357 61.111 0.00 0.00 0.00 2.41
181 182 3.116531 GGTGGCCGTGCGTCTAAC 61.117 66.667 0.00 0.00 0.00 2.34
182 183 4.728102 CGGTGGCCGTGCGTCTAA 62.728 66.667 0.00 0.00 42.73 2.10
193 194 2.631580 TTTTTCGGGATGCGGTGGC 61.632 57.895 0.00 0.00 40.52 5.01
194 195 3.674906 TTTTTCGGGATGCGGTGG 58.325 55.556 0.00 0.00 0.00 4.61
208 209 0.104725 TGGGCAATGGGAGGGTTTTT 60.105 50.000 0.00 0.00 0.00 1.94
209 210 0.118952 ATGGGCAATGGGAGGGTTTT 59.881 50.000 0.00 0.00 0.00 2.43
210 211 0.325577 GATGGGCAATGGGAGGGTTT 60.326 55.000 0.00 0.00 0.00 3.27
211 212 1.224003 AGATGGGCAATGGGAGGGTT 61.224 55.000 0.00 0.00 0.00 4.11
212 213 1.623686 AGATGGGCAATGGGAGGGT 60.624 57.895 0.00 0.00 0.00 4.34
213 214 1.152368 GAGATGGGCAATGGGAGGG 59.848 63.158 0.00 0.00 0.00 4.30
214 215 0.259647 TTGAGATGGGCAATGGGAGG 59.740 55.000 0.00 0.00 0.00 4.30
215 216 1.753073 GTTTGAGATGGGCAATGGGAG 59.247 52.381 0.00 0.00 0.00 4.30
216 217 1.851304 GTTTGAGATGGGCAATGGGA 58.149 50.000 0.00 0.00 0.00 4.37
217 218 0.457035 CGTTTGAGATGGGCAATGGG 59.543 55.000 0.00 0.00 0.00 4.00
218 219 0.457035 CCGTTTGAGATGGGCAATGG 59.543 55.000 0.00 0.00 0.00 3.16
219 220 1.133025 GTCCGTTTGAGATGGGCAATG 59.867 52.381 0.00 0.00 38.97 2.82
220 221 1.271871 TGTCCGTTTGAGATGGGCAAT 60.272 47.619 0.00 0.00 45.91 3.56
221 222 0.109532 TGTCCGTTTGAGATGGGCAA 59.890 50.000 0.00 0.00 45.91 4.52
222 223 0.321564 CTGTCCGTTTGAGATGGGCA 60.322 55.000 0.00 0.00 46.70 5.36
223 224 0.036388 TCTGTCCGTTTGAGATGGGC 60.036 55.000 0.00 0.00 39.63 5.36
224 225 2.472695 TTCTGTCCGTTTGAGATGGG 57.527 50.000 0.00 0.00 34.95 4.00
225 226 4.002982 TGAATTCTGTCCGTTTGAGATGG 58.997 43.478 7.05 0.00 35.59 3.51
226 227 4.931601 TCTGAATTCTGTCCGTTTGAGATG 59.068 41.667 7.05 0.00 0.00 2.90
227 228 5.152623 TCTGAATTCTGTCCGTTTGAGAT 57.847 39.130 7.05 0.00 0.00 2.75
228 229 4.600692 TCTGAATTCTGTCCGTTTGAGA 57.399 40.909 7.05 0.00 0.00 3.27
229 230 6.968131 TTATCTGAATTCTGTCCGTTTGAG 57.032 37.500 7.05 0.00 0.00 3.02
230 231 7.570507 CGTTTTATCTGAATTCTGTCCGTTTGA 60.571 37.037 7.05 0.00 0.00 2.69
231 232 6.519761 CGTTTTATCTGAATTCTGTCCGTTTG 59.480 38.462 7.05 0.00 0.00 2.93
232 233 6.425721 TCGTTTTATCTGAATTCTGTCCGTTT 59.574 34.615 7.05 0.00 0.00 3.60
233 234 5.929992 TCGTTTTATCTGAATTCTGTCCGTT 59.070 36.000 7.05 0.00 0.00 4.44
234 235 5.475719 TCGTTTTATCTGAATTCTGTCCGT 58.524 37.500 7.05 0.00 0.00 4.69
235 236 6.128661 TGTTCGTTTTATCTGAATTCTGTCCG 60.129 38.462 7.05 4.86 0.00 4.79
236 237 7.129109 TGTTCGTTTTATCTGAATTCTGTCC 57.871 36.000 7.05 0.00 0.00 4.02
237 238 7.905493 GGATGTTCGTTTTATCTGAATTCTGTC 59.095 37.037 7.05 0.00 0.00 3.51
238 239 7.390440 TGGATGTTCGTTTTATCTGAATTCTGT 59.610 33.333 7.05 0.56 0.00 3.41
239 240 7.751732 TGGATGTTCGTTTTATCTGAATTCTG 58.248 34.615 7.05 6.50 0.00 3.02
240 241 7.921786 TGGATGTTCGTTTTATCTGAATTCT 57.078 32.000 7.05 0.00 0.00 2.40
241 242 9.573133 AAATGGATGTTCGTTTTATCTGAATTC 57.427 29.630 0.00 0.00 0.00 2.17
244 245 8.673711 CCTAAATGGATGTTCGTTTTATCTGAA 58.326 33.333 0.00 0.00 38.35 3.02
245 246 7.282224 CCCTAAATGGATGTTCGTTTTATCTGA 59.718 37.037 0.00 0.00 38.35 3.27
246 247 7.067008 ACCCTAAATGGATGTTCGTTTTATCTG 59.933 37.037 0.00 0.00 38.35 2.90
247 248 7.116736 ACCCTAAATGGATGTTCGTTTTATCT 58.883 34.615 0.00 0.00 38.35 1.98
248 249 7.329588 ACCCTAAATGGATGTTCGTTTTATC 57.670 36.000 0.00 0.00 38.35 1.75
249 250 6.037830 CGACCCTAAATGGATGTTCGTTTTAT 59.962 38.462 0.00 0.00 38.35 1.40
250 251 5.352016 CGACCCTAAATGGATGTTCGTTTTA 59.648 40.000 0.00 0.00 38.35 1.52
251 252 4.155280 CGACCCTAAATGGATGTTCGTTTT 59.845 41.667 0.00 0.00 38.35 2.43
252 253 3.687698 CGACCCTAAATGGATGTTCGTTT 59.312 43.478 0.00 0.00 38.35 3.60
253 254 3.267483 CGACCCTAAATGGATGTTCGTT 58.733 45.455 0.00 0.00 38.35 3.85
254 255 2.235402 ACGACCCTAAATGGATGTTCGT 59.765 45.455 0.00 0.00 38.35 3.85
255 256 2.607635 CACGACCCTAAATGGATGTTCG 59.392 50.000 0.00 0.00 38.35 3.95
256 257 2.354821 GCACGACCCTAAATGGATGTTC 59.645 50.000 0.00 0.00 38.35 3.18
257 258 2.365582 GCACGACCCTAAATGGATGTT 58.634 47.619 0.00 0.00 38.35 2.71
258 259 1.742411 CGCACGACCCTAAATGGATGT 60.742 52.381 0.00 0.00 38.35 3.06
259 260 0.937304 CGCACGACCCTAAATGGATG 59.063 55.000 0.00 0.00 38.35 3.51
260 261 0.814010 GCGCACGACCCTAAATGGAT 60.814 55.000 0.30 0.00 38.35 3.41
261 262 1.448893 GCGCACGACCCTAAATGGA 60.449 57.895 0.30 0.00 38.35 3.41
262 263 1.449601 AGCGCACGACCCTAAATGG 60.450 57.895 11.47 0.00 0.00 3.16
263 264 1.705337 CCAGCGCACGACCCTAAATG 61.705 60.000 11.47 0.00 0.00 2.32
264 265 1.449601 CCAGCGCACGACCCTAAAT 60.450 57.895 11.47 0.00 0.00 1.40
265 266 2.047655 CCAGCGCACGACCCTAAA 60.048 61.111 11.47 0.00 0.00 1.85
266 267 2.992689 TCCAGCGCACGACCCTAA 60.993 61.111 11.47 0.00 0.00 2.69
267 268 3.449227 CTCCAGCGCACGACCCTA 61.449 66.667 11.47 0.00 0.00 3.53
269 270 4.681978 AACTCCAGCGCACGACCC 62.682 66.667 11.47 0.00 0.00 4.46
270 271 3.414700 CAACTCCAGCGCACGACC 61.415 66.667 11.47 0.00 0.00 4.79
271 272 3.414700 CCAACTCCAGCGCACGAC 61.415 66.667 11.47 0.00 0.00 4.34
274 275 3.605749 TAGGCCAACTCCAGCGCAC 62.606 63.158 11.47 0.00 0.00 5.34
275 276 2.196997 ATTAGGCCAACTCCAGCGCA 62.197 55.000 11.47 0.00 0.00 6.09
276 277 1.452108 ATTAGGCCAACTCCAGCGC 60.452 57.895 5.01 0.00 0.00 5.92
277 278 1.097547 CCATTAGGCCAACTCCAGCG 61.098 60.000 5.01 0.00 0.00 5.18
278 279 0.255890 TCCATTAGGCCAACTCCAGC 59.744 55.000 5.01 0.00 33.74 4.85
279 280 1.561542 AGTCCATTAGGCCAACTCCAG 59.438 52.381 5.01 0.00 33.74 3.86
280 281 1.559682 GAGTCCATTAGGCCAACTCCA 59.440 52.381 5.01 0.00 32.71 3.86
281 282 1.559682 TGAGTCCATTAGGCCAACTCC 59.440 52.381 5.01 0.00 36.12 3.85
282 283 2.633488 GTGAGTCCATTAGGCCAACTC 58.367 52.381 5.01 8.36 37.01 3.01
283 284 1.282157 GGTGAGTCCATTAGGCCAACT 59.718 52.381 5.01 0.00 35.97 3.16
284 285 1.682087 GGGTGAGTCCATTAGGCCAAC 60.682 57.143 5.01 0.00 38.11 3.77
285 286 0.623723 GGGTGAGTCCATTAGGCCAA 59.376 55.000 5.01 0.00 38.11 4.52
286 287 0.548926 TGGGTGAGTCCATTAGGCCA 60.549 55.000 5.01 0.00 38.11 5.36
287 288 0.181350 CTGGGTGAGTCCATTAGGCC 59.819 60.000 0.00 0.00 36.05 5.19
288 289 1.204146 TCTGGGTGAGTCCATTAGGC 58.796 55.000 0.00 0.00 36.05 3.93
289 290 3.200825 ACATTCTGGGTGAGTCCATTAGG 59.799 47.826 0.00 0.00 36.05 2.69
290 291 4.494091 ACATTCTGGGTGAGTCCATTAG 57.506 45.455 0.00 0.00 36.05 1.73
291 292 4.042809 ACAACATTCTGGGTGAGTCCATTA 59.957 41.667 0.00 0.00 36.05 1.90
292 293 3.181429 ACAACATTCTGGGTGAGTCCATT 60.181 43.478 0.00 0.00 36.05 3.16
293 294 2.376518 ACAACATTCTGGGTGAGTCCAT 59.623 45.455 0.00 0.00 36.05 3.41
294 295 1.774254 ACAACATTCTGGGTGAGTCCA 59.226 47.619 0.00 0.00 38.11 4.02
295 296 2.568623 ACAACATTCTGGGTGAGTCC 57.431 50.000 0.00 0.00 0.00 3.85
296 297 4.273148 AGTACAACATTCTGGGTGAGTC 57.727 45.455 0.00 0.00 0.00 3.36
297 298 4.838986 ACTAGTACAACATTCTGGGTGAGT 59.161 41.667 0.00 0.00 0.00 3.41
298 299 5.407407 ACTAGTACAACATTCTGGGTGAG 57.593 43.478 0.00 0.00 0.00 3.51
299 300 6.014647 AGTACTAGTACAACATTCTGGGTGA 58.985 40.000 29.87 0.00 38.48 4.02
300 301 6.282199 AGTACTAGTACAACATTCTGGGTG 57.718 41.667 29.87 0.00 38.48 4.61
301 302 7.180663 ACTAGTACTAGTACAACATTCTGGGT 58.819 38.462 29.96 11.00 43.98 4.51
302 303 7.338703 TGACTAGTACTAGTACAACATTCTGGG 59.661 40.741 30.80 10.87 45.63 4.45
303 304 8.277490 TGACTAGTACTAGTACAACATTCTGG 57.723 38.462 30.80 14.63 45.63 3.86
323 324 7.282224 GGACACAATGGCATACTATTTTGACTA 59.718 37.037 0.00 0.00 0.00 2.59
333 334 3.439857 ACTTGGACACAATGGCATACT 57.560 42.857 0.00 0.00 35.73 2.12
334 335 5.399013 GTTTACTTGGACACAATGGCATAC 58.601 41.667 0.00 0.00 35.73 2.39
335 336 4.155099 CGTTTACTTGGACACAATGGCATA 59.845 41.667 0.00 0.00 35.73 3.14
342 343 1.332375 GCAGCGTTTACTTGGACACAA 59.668 47.619 0.00 0.00 34.87 3.33
345 346 1.601903 CAAGCAGCGTTTACTTGGACA 59.398 47.619 4.42 0.00 37.68 4.02
486 488 0.465705 GGCAGATCACTCATCGGGAA 59.534 55.000 0.00 0.00 36.50 3.97
551 811 0.037697 CGTGTCGGGACTGGAATGAA 60.038 55.000 0.00 0.00 0.00 2.57
593 853 3.214328 AGCATTGACCAAGACTTTTCGT 58.786 40.909 0.00 0.00 0.00 3.85
596 856 2.893489 GGGAGCATTGACCAAGACTTTT 59.107 45.455 0.00 0.00 0.00 2.27
599 859 0.329596 GGGGAGCATTGACCAAGACT 59.670 55.000 0.00 0.00 0.00 3.24
600 860 0.329596 AGGGGAGCATTGACCAAGAC 59.670 55.000 0.00 0.00 0.00 3.01
602 862 1.821136 GAAAGGGGAGCATTGACCAAG 59.179 52.381 0.00 0.00 0.00 3.61
603 863 1.549950 GGAAAGGGGAGCATTGACCAA 60.550 52.381 0.00 0.00 0.00 3.67
604 864 0.039618 GGAAAGGGGAGCATTGACCA 59.960 55.000 0.00 0.00 0.00 4.02
709 997 3.699894 CGTGGGCTGGCTCTGAGT 61.700 66.667 6.53 0.00 0.00 3.41
780 1071 2.031163 GGCTGTGGCTCAACGAGT 59.969 61.111 0.00 0.00 38.73 4.18
784 1075 1.968540 GAGGTGGCTGTGGCTCAAC 60.969 63.158 0.00 0.00 38.73 3.18
785 1076 2.431683 GAGGTGGCTGTGGCTCAA 59.568 61.111 0.00 0.00 38.73 3.02
786 1077 3.640407 GGAGGTGGCTGTGGCTCA 61.640 66.667 0.00 0.00 38.73 4.26
787 1078 4.416738 GGGAGGTGGCTGTGGCTC 62.417 72.222 0.00 0.00 38.73 4.70
788 1079 4.990910 AGGGAGGTGGCTGTGGCT 62.991 66.667 0.00 0.00 38.73 4.75
789 1080 4.416738 GAGGGAGGTGGCTGTGGC 62.417 72.222 0.00 0.00 37.82 5.01
790 1081 3.721706 GGAGGGAGGTGGCTGTGG 61.722 72.222 0.00 0.00 0.00 4.17
791 1082 3.721706 GGGAGGGAGGTGGCTGTG 61.722 72.222 0.00 0.00 0.00 3.66
1080 1384 0.737219 CGTAGTACCCGACCTTGAGG 59.263 60.000 0.00 0.00 42.17 3.86
1085 1389 3.512516 GCGCGTAGTACCCGACCT 61.513 66.667 11.43 0.00 0.00 3.85
1191 1495 0.827925 AGCAGTCGTGGAACTGGAGA 60.828 55.000 6.21 0.00 45.52 3.71
1304 1610 0.736053 AACCGATCAGAGACGAGCTC 59.264 55.000 2.73 2.73 44.29 4.09
1307 1613 1.532090 CCGAAACCGATCAGAGACGAG 60.532 57.143 0.00 0.00 0.00 4.18
1308 1614 0.450583 CCGAAACCGATCAGAGACGA 59.549 55.000 0.00 0.00 0.00 4.20
1309 1615 1.140407 GCCGAAACCGATCAGAGACG 61.140 60.000 0.00 0.00 0.00 4.18
1331 1640 1.750018 CGCATCCCTGGCACAATCA 60.750 57.895 0.00 0.00 38.70 2.57
1738 2063 1.422024 TGGATTCTGGAACCGAAACCA 59.578 47.619 16.36 16.36 39.89 3.67
1797 2122 1.801178 CCAGGTTTCGCTCAGTTTCTC 59.199 52.381 0.00 0.00 0.00 2.87
2133 2482 9.433153 GCTATTTTAACACTACTACTCCAACTT 57.567 33.333 0.00 0.00 0.00 2.66
2134 2483 8.591072 TGCTATTTTAACACTACTACTCCAACT 58.409 33.333 0.00 0.00 0.00 3.16
2135 2484 8.767478 TGCTATTTTAACACTACTACTCCAAC 57.233 34.615 0.00 0.00 0.00 3.77
2136 2485 9.211485 GTTGCTATTTTAACACTACTACTCCAA 57.789 33.333 0.00 0.00 0.00 3.53
2137 2486 7.820872 GGTTGCTATTTTAACACTACTACTCCA 59.179 37.037 0.00 0.00 0.00 3.86
2138 2487 7.820872 TGGTTGCTATTTTAACACTACTACTCC 59.179 37.037 0.00 0.00 0.00 3.85
2139 2488 8.767478 TGGTTGCTATTTTAACACTACTACTC 57.233 34.615 0.00 0.00 0.00 2.59
2140 2489 9.216117 CTTGGTTGCTATTTTAACACTACTACT 57.784 33.333 0.00 0.00 0.00 2.57
2141 2490 9.211485 TCTTGGTTGCTATTTTAACACTACTAC 57.789 33.333 0.00 0.00 0.00 2.73
2142 2491 9.781633 TTCTTGGTTGCTATTTTAACACTACTA 57.218 29.630 0.00 0.00 0.00 1.82
2143 2492 8.685838 TTCTTGGTTGCTATTTTAACACTACT 57.314 30.769 0.00 0.00 0.00 2.57
2174 2523 7.169140 ACGAACATTTCTGGCAAAAACTAATTC 59.831 33.333 0.00 0.00 0.00 2.17
2224 2627 8.895845 CGACTCACAATTTCAGAAAACATTAAG 58.104 33.333 0.00 0.00 0.00 1.85
2242 2646 5.818336 TCTTTGGAAACATTTACGACTCACA 59.182 36.000 0.00 0.00 42.32 3.58
2311 2719 4.176752 CGGGGAGCAAGGGTAGGC 62.177 72.222 0.00 0.00 0.00 3.93
2312 2720 0.979187 TTACGGGGAGCAAGGGTAGG 60.979 60.000 0.00 0.00 0.00 3.18
2313 2721 0.177373 GTTACGGGGAGCAAGGGTAG 59.823 60.000 0.00 0.00 0.00 3.18
2314 2722 1.266867 GGTTACGGGGAGCAAGGGTA 61.267 60.000 0.00 0.00 0.00 3.69
2315 2723 2.599757 GGTTACGGGGAGCAAGGGT 61.600 63.158 0.00 0.00 0.00 4.34
2335 2743 4.642429 GATTCTAGTTCAGTGTGGTGGTT 58.358 43.478 0.00 0.00 0.00 3.67
2336 2744 3.306088 CGATTCTAGTTCAGTGTGGTGGT 60.306 47.826 0.00 0.00 0.00 4.16
2337 2745 3.254060 CGATTCTAGTTCAGTGTGGTGG 58.746 50.000 0.00 0.00 0.00 4.61
2338 2746 3.254060 CCGATTCTAGTTCAGTGTGGTG 58.746 50.000 0.00 0.00 0.00 4.17
2339 2747 2.233922 CCCGATTCTAGTTCAGTGTGGT 59.766 50.000 0.00 0.00 0.00 4.16
2351 2759 1.272490 CGCCATTCTAGCCCGATTCTA 59.728 52.381 0.00 0.00 0.00 2.10
2363 2771 1.738099 GTGACGCTGACGCCATTCT 60.738 57.895 0.00 0.00 45.53 2.40
2567 3513 3.249189 TTCTTGGCGCAGGGACCT 61.249 61.111 10.83 0.00 0.00 3.85
2751 3697 3.013990 CGCGCGCAAAACAACGAA 61.014 55.556 32.61 0.00 0.00 3.85
2753 3699 4.016558 CACGCGCGCAAAACAACG 62.017 61.111 32.58 14.51 0.00 4.10
2767 3713 4.046998 GCACAGCGACACGACACG 62.047 66.667 0.00 0.00 0.00 4.49
2768 3714 3.702555 GGCACAGCGACACGACAC 61.703 66.667 0.00 0.00 0.00 3.67
2769 3715 4.214327 TGGCACAGCGACACGACA 62.214 61.111 0.00 0.00 0.00 4.35
2791 3737 0.385598 TCAGTGAGAAGACGAACGCG 60.386 55.000 3.53 3.53 44.79 6.01
2796 3742 4.097135 GGATGAATCTCAGTGAGAAGACGA 59.903 45.833 26.06 9.57 42.27 4.20
2798 3744 4.358851 CGGATGAATCTCAGTGAGAAGAC 58.641 47.826 26.06 18.80 42.27 3.01
2894 3850 1.470098 TCCTACCGAGAACGTAGCAAC 59.530 52.381 0.00 0.00 37.88 4.17
2898 3854 2.543430 GCTACTCCTACCGAGAACGTAG 59.457 54.545 0.00 0.00 41.63 3.51
2918 3874 2.495669 GACCCCTCTATCAGCTCTATGC 59.504 54.545 0.00 0.00 43.29 3.14
2926 3882 3.829026 TGATGAATCGACCCCTCTATCAG 59.171 47.826 0.00 0.00 0.00 2.90
2937 3893 5.805486 TGCTTACTGTACTTGATGAATCGAC 59.195 40.000 0.00 0.00 0.00 4.20
2948 3904 7.005709 AGACCAAATAGTGCTTACTGTACTT 57.994 36.000 0.00 0.00 41.73 2.24
3023 4025 3.264450 AGTTAACCTGCTAACTCCTGCAT 59.736 43.478 0.88 0.00 37.53 3.96
3035 4037 1.328279 AACCTGCCAAGTTAACCTGC 58.672 50.000 0.88 3.38 0.00 4.85
3036 4038 3.383185 TCAAAACCTGCCAAGTTAACCTG 59.617 43.478 0.88 0.00 0.00 4.00
3065 4133 9.508642 TGTTGATGTTGTATTGTGGAGTAATTA 57.491 29.630 0.00 0.00 0.00 1.40
3066 4134 8.402798 TGTTGATGTTGTATTGTGGAGTAATT 57.597 30.769 0.00 0.00 0.00 1.40
3137 4205 9.696917 GAAATAAACAATTCAGAGTCAAACCAT 57.303 29.630 0.00 0.00 0.00 3.55
3167 4235 1.666011 GTCCACCAGTCTGCGAGAA 59.334 57.895 0.00 0.00 0.00 2.87
3562 4630 1.067495 GTCTGGTCGGAGTTCAGGAAG 60.067 57.143 0.00 0.00 32.01 3.46
3785 4853 2.104963 AGAACCAGGTTCAGAAGTCCAC 59.895 50.000 30.40 3.84 44.11 4.02
3987 5056 0.607620 GCAAACCTTAATGCAGCCCA 59.392 50.000 0.00 0.00 42.12 5.36
3988 5057 0.897621 AGCAAACCTTAATGCAGCCC 59.102 50.000 0.00 0.00 44.95 5.19
4027 5096 5.959618 TCTTGCACTATCGCTAGCTAATA 57.040 39.130 13.93 9.50 35.14 0.98
4110 5183 4.682778 AACATTGGGCGCTAGTTCTATA 57.317 40.909 7.64 0.00 0.00 1.31
4143 5216 9.844790 TGCAATTTCATATTCTCAAAGTTGTAG 57.155 29.630 0.00 0.00 0.00 2.74
4146 5219 8.752766 ACTGCAATTTCATATTCTCAAAGTTG 57.247 30.769 0.00 0.00 0.00 3.16
4191 5264 2.799978 TGTTTGTGACTGTATCTGCACG 59.200 45.455 0.00 0.00 34.12 5.34
4202 5275 3.745975 CGTCCACATACATGTTTGTGACT 59.254 43.478 36.18 10.33 42.52 3.41
4203 5276 3.496884 ACGTCCACATACATGTTTGTGAC 59.503 43.478 36.18 29.64 42.52 3.67
4207 5280 5.403897 GGATACGTCCACATACATGTTTG 57.596 43.478 13.92 13.92 44.42 2.93
4246 5319 2.708051 AGCACCATCATTCAGTGACAG 58.292 47.619 0.00 0.00 40.28 3.51
4256 5329 1.105167 CATCGGCCAAGCACCATCAT 61.105 55.000 2.24 0.00 0.00 2.45
4263 5336 2.048601 AAAAAGCATCGGCCAAGCA 58.951 47.368 2.24 0.00 42.56 3.91
4336 5410 3.922171 TGAGGGGTTTTGTGCAAAAAT 57.078 38.095 2.11 0.00 41.37 1.82
4379 5454 8.980481 TCATCTATGAGTAGTACAGTGATTGA 57.020 34.615 2.52 0.00 32.11 2.57
4413 5488 9.677567 TTCATGACTTATTCTAACTTTTTGTGC 57.322 29.630 0.00 0.00 0.00 4.57
4484 9283 6.642707 ATTGTACGGAATGAGGAAAACAAA 57.357 33.333 0.00 0.00 0.00 2.83
4485 9284 6.642707 AATTGTACGGAATGAGGAAAACAA 57.357 33.333 0.00 0.00 0.00 2.83
4486 9285 6.263392 TGAAATTGTACGGAATGAGGAAAACA 59.737 34.615 0.00 0.00 0.00 2.83
4487 9286 6.674066 TGAAATTGTACGGAATGAGGAAAAC 58.326 36.000 0.00 0.00 0.00 2.43
4488 9287 6.885952 TGAAATTGTACGGAATGAGGAAAA 57.114 33.333 0.00 0.00 0.00 2.29
4510 9309 9.825972 CAAAAGGTACACTTGTGACTTATATTG 57.174 33.333 7.83 6.84 45.63 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.