Multiple sequence alignment - TraesCS5D01G256000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G256000 chr5D 100.000 7501 0 0 1 7501 362390937 362398437 0.000000e+00 13852.0
1 TraesCS5D01G256000 chr5B 94.849 6348 214 59 462 6731 428119843 428126155 0.000000e+00 9806.0
2 TraesCS5D01G256000 chr5B 89.809 471 28 5 6728 7196 428126337 428126789 3.020000e-163 586.0
3 TraesCS5D01G256000 chr5B 94.059 303 16 1 7201 7501 428127009 428127311 6.860000e-125 459.0
4 TraesCS5D01G256000 chr5A 96.262 4655 137 12 2868 7501 463057949 463062587 0.000000e+00 7598.0
5 TraesCS5D01G256000 chr5A 96.643 2085 35 13 810 2869 463055792 463057866 0.000000e+00 3430.0
6 TraesCS5D01G256000 chr5A 92.308 299 14 8 467 759 463055185 463055480 4.190000e-112 416.0
7 TraesCS5D01G256000 chr5A 81.841 402 68 5 26 424 38197595 38197196 4.340000e-87 333.0
8 TraesCS5D01G256000 chr2B 79.341 1002 139 35 4754 5719 687822352 687823321 6.350000e-180 641.0
9 TraesCS5D01G256000 chr1B 89.512 410 38 5 26 434 659356057 659356462 1.440000e-141 514.0
10 TraesCS5D01G256000 chr1B 95.000 60 3 0 185 244 1198598 1198657 2.230000e-15 95.3
11 TraesCS5D01G256000 chr1D 89.250 400 42 1 26 424 131435318 131434919 4.040000e-137 499.0
12 TraesCS5D01G256000 chr1D 88.250 400 46 1 26 424 113987888 113987489 1.890000e-130 477.0
13 TraesCS5D01G256000 chr6B 87.970 399 43 5 26 423 560217862 560218256 4.100000e-127 466.0
14 TraesCS5D01G256000 chr6B 87.469 399 45 5 26 423 540562054 540561660 8.870000e-124 455.0
15 TraesCS5D01G256000 chr4A 83.578 408 51 9 5331 5730 601724004 601723605 1.190000e-97 368.0
16 TraesCS5D01G256000 chr3B 81.663 409 66 9 31 434 595668216 595667812 1.560000e-86 331.0
17 TraesCS5D01G256000 chr2D 90.950 221 18 2 221 440 391805687 391805468 5.690000e-76 296.0
18 TraesCS5D01G256000 chr6D 96.000 50 2 0 7236 7285 334250164 334250213 1.730000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G256000 chr5D 362390937 362398437 7500 False 13852.000000 13852 100.000000 1 7501 1 chr5D.!!$F1 7500
1 TraesCS5D01G256000 chr5B 428119843 428127311 7468 False 3617.000000 9806 92.905667 462 7501 3 chr5B.!!$F1 7039
2 TraesCS5D01G256000 chr5A 463055185 463062587 7402 False 3814.666667 7598 95.071000 467 7501 3 chr5A.!!$F1 7034
3 TraesCS5D01G256000 chr2B 687822352 687823321 969 False 641.000000 641 79.341000 4754 5719 1 chr2B.!!$F1 965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.030638 CGCAAACACTTGAACCCCAG 59.969 55.000 0.00 0.0 34.14 4.45 F
781 789 0.032017 TCAGTCTAGGGCTTCCTCCC 60.032 60.000 0.00 0.0 46.93 4.30 F
898 1168 1.002792 GTTTCGCGCCAAAAGAGAAGT 60.003 47.619 0.56 0.0 0.00 3.01 F
911 1181 1.677637 GAGAAGTACCTCCCCTGCGG 61.678 65.000 0.00 0.0 0.00 5.69 F
1038 1316 3.073356 AGGTCGGTCCAAGTTTTAATGGA 59.927 43.478 0.00 0.0 43.32 3.41 F
1479 1771 3.823873 TGGTACTGTATTTGGTGCCTTTG 59.176 43.478 0.00 0.0 38.66 2.77 F
3763 4173 1.618837 CTTGTTTCTCTCGGTCCCTGA 59.381 52.381 0.00 0.0 0.00 3.86 F
3892 4302 1.554617 TGACGCCTGAGGAATCAATCA 59.445 47.619 0.65 0.0 0.00 2.57 F
6162 6631 0.954452 CTTGAGGGTGCAGGTTTGTC 59.046 55.000 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1129 1407 0.040692 GAACAAAGAAACCGCCGGAC 60.041 55.000 11.71 0.23 0.00 4.79 R
2537 2851 1.338864 CCAGAGTCAGTCAGCAATGCT 60.339 52.381 0.00 0.00 40.77 3.79 R
2825 3143 5.584251 TCAAATTTTGCTCAAAAGTGGAACC 59.416 36.000 9.39 0.00 42.72 3.62 R
3040 3443 9.892130 AAACCTAAAACCATGTTGACAAATTAA 57.108 25.926 0.00 0.00 0.00 1.40 R
3505 3908 1.051812 AGTCTCACAGGACCACTTGG 58.948 55.000 0.00 0.00 42.17 3.61 R
3781 4191 3.541632 TCAAAACGGAAAGCAGTTCTCT 58.458 40.909 0.81 0.00 36.40 3.10 R
4851 5263 3.071479 TCGTGGTTTATCTTCAGGCAAC 58.929 45.455 0.00 0.00 0.00 4.17 R
6353 6826 1.077357 AACCCACTTTGGCACGTCA 60.077 52.632 0.00 0.00 35.79 4.35 R
7141 7806 1.447838 CACGTGGCGCCAGTAGATT 60.448 57.895 33.73 7.53 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.814264 TTTTTAAATACTACGTTCCCCAACA 57.186 32.000 0.00 0.00 32.14 3.33
25 26 7.999450 TTTTAAATACTACGTTCCCCAACAT 57.001 32.000 0.00 0.00 32.14 2.71
26 27 6.988622 TTAAATACTACGTTCCCCAACATG 57.011 37.500 0.00 0.00 32.14 3.21
27 28 4.563140 AATACTACGTTCCCCAACATGT 57.437 40.909 0.00 0.00 32.14 3.21
28 29 5.680594 AATACTACGTTCCCCAACATGTA 57.319 39.130 0.00 0.00 32.14 2.29
29 30 5.881923 ATACTACGTTCCCCAACATGTAT 57.118 39.130 0.00 0.00 32.14 2.29
30 31 3.869065 ACTACGTTCCCCAACATGTATG 58.131 45.455 0.00 0.00 32.14 2.39
31 32 2.122783 ACGTTCCCCAACATGTATGG 57.877 50.000 15.95 15.95 37.71 2.74
32 33 0.738389 CGTTCCCCAACATGTATGGC 59.262 55.000 16.96 6.83 36.58 4.40
33 34 1.681780 CGTTCCCCAACATGTATGGCT 60.682 52.381 16.96 0.00 36.58 4.75
34 35 2.456577 GTTCCCCAACATGTATGGCTT 58.543 47.619 16.96 0.00 36.58 4.35
35 36 2.142356 TCCCCAACATGTATGGCTTG 57.858 50.000 16.96 4.23 36.58 4.01
36 37 1.357420 TCCCCAACATGTATGGCTTGT 59.643 47.619 16.96 0.00 36.58 3.16
37 38 1.750778 CCCCAACATGTATGGCTTGTC 59.249 52.381 16.96 0.00 36.58 3.18
38 39 2.621407 CCCCAACATGTATGGCTTGTCT 60.621 50.000 16.96 0.00 36.58 3.41
39 40 3.371487 CCCCAACATGTATGGCTTGTCTA 60.371 47.826 16.96 0.00 36.58 2.59
40 41 4.464008 CCCAACATGTATGGCTTGTCTAT 58.536 43.478 16.96 0.00 36.58 1.98
41 42 4.276678 CCCAACATGTATGGCTTGTCTATG 59.723 45.833 16.96 1.10 36.58 2.23
42 43 4.883585 CCAACATGTATGGCTTGTCTATGT 59.116 41.667 0.00 0.00 34.84 2.29
43 44 5.220912 CCAACATGTATGGCTTGTCTATGTG 60.221 44.000 0.00 0.00 34.84 3.21
44 45 5.357742 ACATGTATGGCTTGTCTATGTGA 57.642 39.130 0.00 0.00 30.78 3.58
45 46 5.744171 ACATGTATGGCTTGTCTATGTGAA 58.256 37.500 0.00 0.00 30.78 3.18
46 47 5.586243 ACATGTATGGCTTGTCTATGTGAAC 59.414 40.000 0.00 0.00 30.78 3.18
47 48 5.420725 TGTATGGCTTGTCTATGTGAACT 57.579 39.130 0.00 0.00 0.00 3.01
48 49 5.419542 TGTATGGCTTGTCTATGTGAACTC 58.580 41.667 0.00 0.00 0.00 3.01
49 50 4.833478 ATGGCTTGTCTATGTGAACTCT 57.167 40.909 0.00 0.00 0.00 3.24
50 51 5.939764 ATGGCTTGTCTATGTGAACTCTA 57.060 39.130 0.00 0.00 0.00 2.43
51 52 5.330455 TGGCTTGTCTATGTGAACTCTAG 57.670 43.478 0.00 0.00 0.00 2.43
52 53 4.116238 GGCTTGTCTATGTGAACTCTAGC 58.884 47.826 0.00 0.00 0.00 3.42
53 54 4.116238 GCTTGTCTATGTGAACTCTAGCC 58.884 47.826 0.00 0.00 0.00 3.93
54 55 4.382040 GCTTGTCTATGTGAACTCTAGCCA 60.382 45.833 0.00 0.00 0.00 4.75
55 56 4.720649 TGTCTATGTGAACTCTAGCCAC 57.279 45.455 0.00 0.00 0.00 5.01
56 57 3.447586 TGTCTATGTGAACTCTAGCCACC 59.552 47.826 0.00 0.00 0.00 4.61
57 58 2.688446 TCTATGTGAACTCTAGCCACCG 59.312 50.000 0.00 0.00 0.00 4.94
58 59 0.108138 ATGTGAACTCTAGCCACCGC 60.108 55.000 0.00 0.00 0.00 5.68
59 60 1.448013 GTGAACTCTAGCCACCGCC 60.448 63.158 0.00 0.00 34.57 6.13
60 61 1.911269 TGAACTCTAGCCACCGCCA 60.911 57.895 0.00 0.00 34.57 5.69
61 62 1.264749 TGAACTCTAGCCACCGCCAT 61.265 55.000 0.00 0.00 34.57 4.40
62 63 0.530870 GAACTCTAGCCACCGCCATC 60.531 60.000 0.00 0.00 34.57 3.51
63 64 1.972660 AACTCTAGCCACCGCCATCC 61.973 60.000 0.00 0.00 34.57 3.51
64 65 2.364973 TCTAGCCACCGCCATCCA 60.365 61.111 0.00 0.00 34.57 3.41
65 66 2.203070 CTAGCCACCGCCATCCAC 60.203 66.667 0.00 0.00 34.57 4.02
66 67 3.757248 CTAGCCACCGCCATCCACC 62.757 68.421 0.00 0.00 34.57 4.61
68 69 2.882403 TAGCCACCGCCATCCACCTA 62.882 60.000 0.00 0.00 34.57 3.08
69 70 2.505982 CCACCGCCATCCACCTAG 59.494 66.667 0.00 0.00 0.00 3.02
70 71 2.203070 CACCGCCATCCACCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
71 72 2.365635 ACCGCCATCCACCTAGCT 60.366 61.111 0.00 0.00 0.00 3.32
72 73 2.109799 CCGCCATCCACCTAGCTG 59.890 66.667 0.00 0.00 0.00 4.24
73 74 2.590007 CGCCATCCACCTAGCTGC 60.590 66.667 0.00 0.00 0.00 5.25
74 75 2.203266 GCCATCCACCTAGCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
75 76 2.750657 GCCATCCACCTAGCTGCCT 61.751 63.158 0.00 0.00 0.00 4.75
76 77 1.449353 CCATCCACCTAGCTGCCTC 59.551 63.158 0.00 0.00 0.00 4.70
77 78 1.449353 CATCCACCTAGCTGCCTCC 59.551 63.158 0.00 0.00 0.00 4.30
78 79 2.136878 ATCCACCTAGCTGCCTCCG 61.137 63.158 0.00 0.00 0.00 4.63
79 80 3.854669 CCACCTAGCTGCCTCCGG 61.855 72.222 0.00 0.00 0.00 5.14
80 81 3.077556 CACCTAGCTGCCTCCGGT 61.078 66.667 0.00 0.00 0.00 5.28
81 82 3.077556 ACCTAGCTGCCTCCGGTG 61.078 66.667 0.00 0.00 0.00 4.94
82 83 3.854669 CCTAGCTGCCTCCGGTGG 61.855 72.222 18.51 18.51 0.00 4.61
83 84 3.077556 CTAGCTGCCTCCGGTGGT 61.078 66.667 23.03 6.53 0.00 4.16
84 85 3.376935 CTAGCTGCCTCCGGTGGTG 62.377 68.421 23.03 16.67 0.00 4.17
91 92 4.003788 CTCCGGTGGTGCGTCCTT 62.004 66.667 0.00 0.00 37.07 3.36
92 93 3.530910 CTCCGGTGGTGCGTCCTTT 62.531 63.158 0.00 0.00 37.07 3.11
93 94 2.593436 CCGGTGGTGCGTCCTTTT 60.593 61.111 0.00 0.00 37.07 2.27
94 95 2.613506 CCGGTGGTGCGTCCTTTTC 61.614 63.158 0.00 0.00 37.07 2.29
95 96 2.943653 GGTGGTGCGTCCTTTTCG 59.056 61.111 0.00 0.00 37.07 3.46
96 97 1.890510 GGTGGTGCGTCCTTTTCGT 60.891 57.895 0.00 0.00 37.07 3.85
97 98 1.568025 GTGGTGCGTCCTTTTCGTC 59.432 57.895 0.00 0.00 37.07 4.20
98 99 1.144276 TGGTGCGTCCTTTTCGTCA 59.856 52.632 0.00 0.00 37.07 4.35
99 100 0.462225 TGGTGCGTCCTTTTCGTCAA 60.462 50.000 0.00 0.00 37.07 3.18
100 101 0.658897 GGTGCGTCCTTTTCGTCAAA 59.341 50.000 0.00 0.00 0.00 2.69
101 102 1.333791 GGTGCGTCCTTTTCGTCAAAG 60.334 52.381 3.65 3.65 41.64 2.77
102 103 1.595794 GTGCGTCCTTTTCGTCAAAGA 59.404 47.619 10.32 0.00 44.40 2.52
103 104 1.595794 TGCGTCCTTTTCGTCAAAGAC 59.404 47.619 10.32 6.79 44.40 3.01
116 117 4.590400 GTCAAAGACGACATCATCAAGG 57.410 45.455 0.00 0.00 35.88 3.61
117 118 3.997021 GTCAAAGACGACATCATCAAGGT 59.003 43.478 0.00 0.00 35.88 3.50
118 119 4.092091 GTCAAAGACGACATCATCAAGGTC 59.908 45.833 0.00 0.00 35.88 3.85
119 120 4.021104 TCAAAGACGACATCATCAAGGTCT 60.021 41.667 0.00 0.00 36.38 3.85
120 121 4.543590 AAGACGACATCATCAAGGTCTT 57.456 40.909 0.00 0.00 39.24 3.01
121 122 4.116747 AGACGACATCATCAAGGTCTTC 57.883 45.455 0.00 0.00 31.13 2.87
122 123 3.118956 AGACGACATCATCAAGGTCTTCC 60.119 47.826 0.00 0.00 32.17 3.46
124 125 3.118956 ACGACATCATCAAGGTCTTCCTC 60.119 47.826 0.00 0.00 44.35 3.71
125 126 3.452474 GACATCATCAAGGTCTTCCTCG 58.548 50.000 0.00 0.00 44.35 4.63
126 127 2.208431 CATCATCAAGGTCTTCCTCGC 58.792 52.381 0.00 0.00 44.35 5.03
127 128 0.173481 TCATCAAGGTCTTCCTCGCG 59.827 55.000 0.00 0.00 44.35 5.87
128 129 0.807667 CATCAAGGTCTTCCTCGCGG 60.808 60.000 6.13 0.00 44.35 6.46
129 130 0.970937 ATCAAGGTCTTCCTCGCGGA 60.971 55.000 6.13 0.00 44.35 5.54
130 131 1.153745 CAAGGTCTTCCTCGCGGAG 60.154 63.158 6.13 2.01 44.35 4.63
131 132 3.453679 AGGTCTTCCTCGCGGAGC 61.454 66.667 6.13 4.66 45.03 4.70
143 144 4.785453 CGGAGCCCCAACTCAGCC 62.785 72.222 0.00 0.00 38.50 4.85
144 145 3.650950 GGAGCCCCAACTCAGCCA 61.651 66.667 0.00 0.00 38.50 4.75
145 146 2.436109 GAGCCCCAACTCAGCCAA 59.564 61.111 0.00 0.00 36.65 4.52
146 147 1.973812 GAGCCCCAACTCAGCCAAC 60.974 63.158 0.00 0.00 36.65 3.77
147 148 2.203480 GCCCCAACTCAGCCAACA 60.203 61.111 0.00 0.00 0.00 3.33
148 149 1.607467 GCCCCAACTCAGCCAACAT 60.607 57.895 0.00 0.00 0.00 2.71
149 150 1.598701 GCCCCAACTCAGCCAACATC 61.599 60.000 0.00 0.00 0.00 3.06
150 151 0.038744 CCCCAACTCAGCCAACATCT 59.961 55.000 0.00 0.00 0.00 2.90
151 152 1.548582 CCCCAACTCAGCCAACATCTT 60.549 52.381 0.00 0.00 0.00 2.40
152 153 1.815003 CCCAACTCAGCCAACATCTTC 59.185 52.381 0.00 0.00 0.00 2.87
153 154 2.553904 CCCAACTCAGCCAACATCTTCT 60.554 50.000 0.00 0.00 0.00 2.85
154 155 2.746362 CCAACTCAGCCAACATCTTCTC 59.254 50.000 0.00 0.00 0.00 2.87
155 156 2.746362 CAACTCAGCCAACATCTTCTCC 59.254 50.000 0.00 0.00 0.00 3.71
156 157 1.980765 ACTCAGCCAACATCTTCTCCA 59.019 47.619 0.00 0.00 0.00 3.86
157 158 2.289945 ACTCAGCCAACATCTTCTCCAC 60.290 50.000 0.00 0.00 0.00 4.02
158 159 1.699083 TCAGCCAACATCTTCTCCACA 59.301 47.619 0.00 0.00 0.00 4.17
159 160 2.306805 TCAGCCAACATCTTCTCCACAT 59.693 45.455 0.00 0.00 0.00 3.21
160 161 2.681848 CAGCCAACATCTTCTCCACATC 59.318 50.000 0.00 0.00 0.00 3.06
161 162 2.575279 AGCCAACATCTTCTCCACATCT 59.425 45.455 0.00 0.00 0.00 2.90
162 163 2.681848 GCCAACATCTTCTCCACATCTG 59.318 50.000 0.00 0.00 0.00 2.90
163 164 3.620719 GCCAACATCTTCTCCACATCTGA 60.621 47.826 0.00 0.00 0.00 3.27
164 165 3.937706 CCAACATCTTCTCCACATCTGAC 59.062 47.826 0.00 0.00 0.00 3.51
165 166 3.516981 ACATCTTCTCCACATCTGACG 57.483 47.619 0.00 0.00 0.00 4.35
166 167 2.200067 CATCTTCTCCACATCTGACGC 58.800 52.381 0.00 0.00 0.00 5.19
167 168 0.171231 TCTTCTCCACATCTGACGCG 59.829 55.000 3.53 3.53 0.00 6.01
168 169 0.803768 CTTCTCCACATCTGACGCGG 60.804 60.000 12.47 0.00 0.00 6.46
169 170 1.248101 TTCTCCACATCTGACGCGGA 61.248 55.000 12.47 0.00 0.00 5.54
170 171 1.215382 CTCCACATCTGACGCGGAA 59.785 57.895 12.47 0.00 0.00 4.30
171 172 1.078759 CTCCACATCTGACGCGGAAC 61.079 60.000 12.47 1.68 0.00 3.62
172 173 1.079819 CCACATCTGACGCGGAACT 60.080 57.895 12.47 0.00 0.00 3.01
173 174 1.354337 CCACATCTGACGCGGAACTG 61.354 60.000 12.47 5.93 0.00 3.16
174 175 1.079819 ACATCTGACGCGGAACTGG 60.080 57.895 12.47 0.00 0.00 4.00
175 176 1.215382 CATCTGACGCGGAACTGGA 59.785 57.895 12.47 0.00 0.00 3.86
176 177 0.389817 CATCTGACGCGGAACTGGAA 60.390 55.000 12.47 0.00 0.00 3.53
177 178 0.389948 ATCTGACGCGGAACTGGAAC 60.390 55.000 12.47 0.00 0.00 3.62
178 179 1.006102 CTGACGCGGAACTGGAACT 60.006 57.895 12.47 0.00 0.00 3.01
179 180 1.006571 TGACGCGGAACTGGAACTC 60.007 57.895 12.47 0.00 0.00 3.01
180 181 2.049433 ACGCGGAACTGGAACTCG 60.049 61.111 12.47 0.00 0.00 4.18
181 182 2.257371 CGCGGAACTGGAACTCGA 59.743 61.111 0.00 0.00 0.00 4.04
182 183 1.372499 CGCGGAACTGGAACTCGAA 60.372 57.895 0.00 0.00 0.00 3.71
183 184 1.344942 CGCGGAACTGGAACTCGAAG 61.345 60.000 0.00 0.00 0.00 3.79
184 185 1.627550 GCGGAACTGGAACTCGAAGC 61.628 60.000 0.00 0.00 0.00 3.86
185 186 1.014564 CGGAACTGGAACTCGAAGCC 61.015 60.000 0.00 0.00 0.00 4.35
186 187 0.321996 GGAACTGGAACTCGAAGCCT 59.678 55.000 0.00 0.00 0.00 4.58
187 188 1.433534 GAACTGGAACTCGAAGCCTG 58.566 55.000 0.00 0.00 0.00 4.85
188 189 0.035458 AACTGGAACTCGAAGCCTGG 59.965 55.000 8.78 0.00 0.00 4.45
189 190 1.122019 ACTGGAACTCGAAGCCTGGT 61.122 55.000 0.00 2.35 0.00 4.00
190 191 0.035458 CTGGAACTCGAAGCCTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
191 192 0.250295 TGGAACTCGAAGCCTGGTTG 60.250 55.000 0.00 0.00 0.00 3.77
192 193 0.955919 GGAACTCGAAGCCTGGTTGG 60.956 60.000 0.00 0.00 39.35 3.77
193 194 0.250338 GAACTCGAAGCCTGGTTGGT 60.250 55.000 0.00 0.00 38.35 3.67
194 195 0.250338 AACTCGAAGCCTGGTTGGTC 60.250 55.000 0.00 0.00 38.35 4.02
195 196 1.376037 CTCGAAGCCTGGTTGGTCC 60.376 63.158 0.00 0.00 38.35 4.46
196 197 1.831652 CTCGAAGCCTGGTTGGTCCT 61.832 60.000 0.00 0.00 38.35 3.85
197 198 1.073199 CGAAGCCTGGTTGGTCCTT 59.927 57.895 0.00 0.00 38.35 3.36
198 199 1.237285 CGAAGCCTGGTTGGTCCTTG 61.237 60.000 0.00 0.00 38.35 3.61
199 200 0.110486 GAAGCCTGGTTGGTCCTTGA 59.890 55.000 0.00 0.00 38.35 3.02
200 201 0.779997 AAGCCTGGTTGGTCCTTGAT 59.220 50.000 0.00 0.00 38.35 2.57
201 202 0.329596 AGCCTGGTTGGTCCTTGATC 59.670 55.000 0.00 0.00 38.35 2.92
202 203 0.681243 GCCTGGTTGGTCCTTGATCC 60.681 60.000 0.00 0.00 38.35 3.36
203 204 0.034089 CCTGGTTGGTCCTTGATCCC 60.034 60.000 0.00 0.00 37.07 3.85
204 205 0.698238 CTGGTTGGTCCTTGATCCCA 59.302 55.000 0.00 0.00 37.07 4.37
205 206 1.285962 CTGGTTGGTCCTTGATCCCAT 59.714 52.381 0.00 0.00 37.07 4.00
206 207 1.284785 TGGTTGGTCCTTGATCCCATC 59.715 52.381 0.00 0.00 37.07 3.51
207 208 1.668419 GTTGGTCCTTGATCCCATCG 58.332 55.000 0.00 0.00 0.00 3.84
208 209 0.107214 TTGGTCCTTGATCCCATCGC 60.107 55.000 0.00 0.00 0.00 4.58
209 210 1.227973 GGTCCTTGATCCCATCGCC 60.228 63.158 0.00 0.00 0.00 5.54
210 211 1.595382 GTCCTTGATCCCATCGCCG 60.595 63.158 0.00 0.00 0.00 6.46
211 212 2.974698 CCTTGATCCCATCGCCGC 60.975 66.667 0.00 0.00 0.00 6.53
212 213 2.203056 CTTGATCCCATCGCCGCA 60.203 61.111 0.00 0.00 0.00 5.69
213 214 1.819208 CTTGATCCCATCGCCGCAA 60.819 57.895 0.00 0.00 0.00 4.85
214 215 1.375853 CTTGATCCCATCGCCGCAAA 61.376 55.000 0.00 0.00 0.00 3.68
215 216 1.653094 TTGATCCCATCGCCGCAAAC 61.653 55.000 0.00 0.00 0.00 2.93
216 217 2.045438 ATCCCATCGCCGCAAACA 60.045 55.556 0.00 0.00 0.00 2.83
217 218 2.322999 GATCCCATCGCCGCAAACAC 62.323 60.000 0.00 0.00 0.00 3.32
218 219 2.819984 ATCCCATCGCCGCAAACACT 62.820 55.000 0.00 0.00 0.00 3.55
219 220 2.625823 CCCATCGCCGCAAACACTT 61.626 57.895 0.00 0.00 0.00 3.16
220 221 1.442520 CCATCGCCGCAAACACTTG 60.443 57.895 0.00 0.00 35.49 3.16
221 222 1.573932 CATCGCCGCAAACACTTGA 59.426 52.632 0.00 0.00 34.14 3.02
222 223 0.040514 CATCGCCGCAAACACTTGAA 60.041 50.000 0.00 0.00 34.14 2.69
223 224 0.040425 ATCGCCGCAAACACTTGAAC 60.040 50.000 0.00 0.00 34.14 3.18
224 225 1.657181 CGCCGCAAACACTTGAACC 60.657 57.895 0.00 0.00 34.14 3.62
225 226 1.299850 GCCGCAAACACTTGAACCC 60.300 57.895 0.00 0.00 34.14 4.11
226 227 1.362355 CCGCAAACACTTGAACCCC 59.638 57.895 0.00 0.00 34.14 4.95
227 228 1.388065 CCGCAAACACTTGAACCCCA 61.388 55.000 0.00 0.00 34.14 4.96
228 229 0.030638 CGCAAACACTTGAACCCCAG 59.969 55.000 0.00 0.00 34.14 4.45
229 230 0.249447 GCAAACACTTGAACCCCAGC 60.249 55.000 0.00 0.00 34.14 4.85
230 231 0.389025 CAAACACTTGAACCCCAGCC 59.611 55.000 0.00 0.00 34.14 4.85
231 232 0.759060 AAACACTTGAACCCCAGCCC 60.759 55.000 0.00 0.00 0.00 5.19
232 233 2.672996 CACTTGAACCCCAGCCCG 60.673 66.667 0.00 0.00 0.00 6.13
233 234 3.175710 ACTTGAACCCCAGCCCGT 61.176 61.111 0.00 0.00 0.00 5.28
234 235 2.672996 CTTGAACCCCAGCCCGTG 60.673 66.667 0.00 0.00 0.00 4.94
235 236 3.172106 TTGAACCCCAGCCCGTGA 61.172 61.111 0.00 0.00 0.00 4.35
236 237 2.484287 CTTGAACCCCAGCCCGTGAT 62.484 60.000 0.00 0.00 0.00 3.06
237 238 1.202099 TTGAACCCCAGCCCGTGATA 61.202 55.000 0.00 0.00 0.00 2.15
238 239 1.146263 GAACCCCAGCCCGTGATAG 59.854 63.158 0.00 0.00 0.00 2.08
239 240 1.306654 AACCCCAGCCCGTGATAGA 60.307 57.895 0.00 0.00 0.00 1.98
240 241 0.912487 AACCCCAGCCCGTGATAGAA 60.912 55.000 0.00 0.00 0.00 2.10
241 242 0.912487 ACCCCAGCCCGTGATAGAAA 60.912 55.000 0.00 0.00 0.00 2.52
242 243 0.254747 CCCCAGCCCGTGATAGAAAA 59.745 55.000 0.00 0.00 0.00 2.29
243 244 1.379527 CCCAGCCCGTGATAGAAAAC 58.620 55.000 0.00 0.00 0.00 2.43
244 245 1.006832 CCAGCCCGTGATAGAAAACG 58.993 55.000 0.00 0.00 39.48 3.60
245 246 1.404986 CCAGCCCGTGATAGAAAACGA 60.405 52.381 0.00 0.00 42.32 3.85
246 247 2.550978 CAGCCCGTGATAGAAAACGAT 58.449 47.619 0.00 0.00 42.32 3.73
247 248 2.540101 CAGCCCGTGATAGAAAACGATC 59.460 50.000 0.00 0.00 42.32 3.69
248 249 1.521423 GCCCGTGATAGAAAACGATCG 59.479 52.381 14.88 14.88 42.32 3.69
249 250 2.124903 CCCGTGATAGAAAACGATCGG 58.875 52.381 20.98 1.23 42.32 4.18
250 251 2.124903 CCGTGATAGAAAACGATCGGG 58.875 52.381 20.98 2.00 42.32 5.14
251 252 1.521423 CGTGATAGAAAACGATCGGGC 59.479 52.381 20.98 5.40 42.32 6.13
252 253 1.865340 GTGATAGAAAACGATCGGGCC 59.135 52.381 20.98 0.00 0.00 5.80
253 254 1.760613 TGATAGAAAACGATCGGGCCT 59.239 47.619 20.98 12.60 0.00 5.19
254 255 2.169769 TGATAGAAAACGATCGGGCCTT 59.830 45.455 20.98 6.51 0.00 4.35
255 256 2.018542 TAGAAAACGATCGGGCCTTG 57.981 50.000 20.98 0.00 0.00 3.61
256 257 0.323629 AGAAAACGATCGGGCCTTGA 59.676 50.000 20.98 0.73 0.00 3.02
257 258 0.727398 GAAAACGATCGGGCCTTGAG 59.273 55.000 20.98 0.00 0.00 3.02
258 259 0.323629 AAAACGATCGGGCCTTGAGA 59.676 50.000 20.98 0.00 0.00 3.27
259 260 0.323629 AAACGATCGGGCCTTGAGAA 59.676 50.000 20.98 0.00 0.00 2.87
260 261 0.391263 AACGATCGGGCCTTGAGAAC 60.391 55.000 20.98 0.00 0.00 3.01
261 262 1.258445 ACGATCGGGCCTTGAGAACT 61.258 55.000 20.98 0.00 0.00 3.01
262 263 0.744874 CGATCGGGCCTTGAGAACTA 59.255 55.000 7.38 0.00 0.00 2.24
263 264 1.136305 CGATCGGGCCTTGAGAACTAA 59.864 52.381 7.38 0.00 0.00 2.24
264 265 2.552031 GATCGGGCCTTGAGAACTAAC 58.448 52.381 0.84 0.00 0.00 2.34
265 266 0.611714 TCGGGCCTTGAGAACTAACC 59.388 55.000 0.84 0.00 0.00 2.85
266 267 0.392595 CGGGCCTTGAGAACTAACCC 60.393 60.000 0.84 0.00 0.00 4.11
267 268 0.992695 GGGCCTTGAGAACTAACCCT 59.007 55.000 0.84 0.00 32.88 4.34
268 269 2.193993 GGGCCTTGAGAACTAACCCTA 58.806 52.381 0.84 0.00 32.88 3.53
269 270 2.170817 GGGCCTTGAGAACTAACCCTAG 59.829 54.545 0.84 0.00 32.88 3.02
270 271 2.420269 GGCCTTGAGAACTAACCCTAGC 60.420 54.545 0.00 0.00 0.00 3.42
271 272 2.502130 GCCTTGAGAACTAACCCTAGCT 59.498 50.000 0.00 0.00 0.00 3.32
272 273 3.431068 GCCTTGAGAACTAACCCTAGCTC 60.431 52.174 0.00 0.00 0.00 4.09
273 274 4.027437 CCTTGAGAACTAACCCTAGCTCT 58.973 47.826 0.00 0.00 34.01 4.09
274 275 4.098807 CCTTGAGAACTAACCCTAGCTCTC 59.901 50.000 0.00 5.87 43.41 3.20
275 276 3.633418 TGAGAACTAACCCTAGCTCTCC 58.367 50.000 9.12 0.00 42.86 3.71
276 277 2.619646 GAGAACTAACCCTAGCTCTCCG 59.380 54.545 0.00 0.00 39.79 4.63
277 278 2.025131 AGAACTAACCCTAGCTCTCCGT 60.025 50.000 0.00 0.00 26.21 4.69
278 279 2.528673 ACTAACCCTAGCTCTCCGTT 57.471 50.000 0.00 0.00 0.00 4.44
279 280 2.377073 ACTAACCCTAGCTCTCCGTTC 58.623 52.381 0.00 0.00 0.00 3.95
280 281 1.682323 CTAACCCTAGCTCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
281 282 0.976590 AACCCTAGCTCTCCGTTCCC 60.977 60.000 0.00 0.00 0.00 3.97
282 283 1.075896 CCCTAGCTCTCCGTTCCCT 60.076 63.158 0.00 0.00 0.00 4.20
283 284 0.185416 CCCTAGCTCTCCGTTCCCTA 59.815 60.000 0.00 0.00 0.00 3.53
284 285 1.320507 CCTAGCTCTCCGTTCCCTAC 58.679 60.000 0.00 0.00 0.00 3.18
285 286 1.409802 CCTAGCTCTCCGTTCCCTACA 60.410 57.143 0.00 0.00 0.00 2.74
286 287 1.950909 CTAGCTCTCCGTTCCCTACAG 59.049 57.143 0.00 0.00 0.00 2.74
287 288 0.684805 AGCTCTCCGTTCCCTACAGG 60.685 60.000 0.00 0.00 0.00 4.00
299 300 1.348064 CCTACAGGGAGGTGAACACA 58.652 55.000 7.25 0.00 37.23 3.72
300 301 1.697432 CCTACAGGGAGGTGAACACAA 59.303 52.381 7.25 0.00 37.23 3.33
301 302 2.289694 CCTACAGGGAGGTGAACACAAG 60.290 54.545 7.25 0.00 37.23 3.16
302 303 0.474184 ACAGGGAGGTGAACACAAGG 59.526 55.000 7.25 0.00 0.00 3.61
303 304 0.890996 CAGGGAGGTGAACACAAGGC 60.891 60.000 7.25 0.00 0.00 4.35
304 305 1.062488 AGGGAGGTGAACACAAGGCT 61.062 55.000 7.25 0.00 0.00 4.58
305 306 0.890996 GGGAGGTGAACACAAGGCTG 60.891 60.000 7.25 0.00 0.00 4.85
306 307 0.890996 GGAGGTGAACACAAGGCTGG 60.891 60.000 7.25 0.00 0.00 4.85
307 308 0.890996 GAGGTGAACACAAGGCTGGG 60.891 60.000 7.25 0.00 0.00 4.45
308 309 1.150536 GGTGAACACAAGGCTGGGA 59.849 57.895 7.25 0.00 0.00 4.37
309 310 0.467290 GGTGAACACAAGGCTGGGAA 60.467 55.000 7.25 0.00 0.00 3.97
310 311 0.954452 GTGAACACAAGGCTGGGAAG 59.046 55.000 0.00 0.00 0.00 3.46
311 312 0.550914 TGAACACAAGGCTGGGAAGT 59.449 50.000 0.00 0.00 0.00 3.01
312 313 0.954452 GAACACAAGGCTGGGAAGTG 59.046 55.000 0.00 0.00 36.34 3.16
313 314 0.550914 AACACAAGGCTGGGAAGTGA 59.449 50.000 10.04 0.00 34.47 3.41
314 315 0.773644 ACACAAGGCTGGGAAGTGAT 59.226 50.000 10.04 0.00 34.47 3.06
315 316 1.985159 ACACAAGGCTGGGAAGTGATA 59.015 47.619 10.04 0.00 34.47 2.15
316 317 2.290323 ACACAAGGCTGGGAAGTGATAC 60.290 50.000 10.04 0.00 34.47 2.24
317 318 2.026822 CACAAGGCTGGGAAGTGATACT 60.027 50.000 0.00 0.00 32.14 2.12
318 319 3.197766 CACAAGGCTGGGAAGTGATACTA 59.802 47.826 0.00 0.00 32.14 1.82
319 320 3.844211 ACAAGGCTGGGAAGTGATACTAA 59.156 43.478 0.00 0.00 0.00 2.24
320 321 4.080863 ACAAGGCTGGGAAGTGATACTAAG 60.081 45.833 0.00 0.00 0.00 2.18
321 322 3.995636 AGGCTGGGAAGTGATACTAAGA 58.004 45.455 0.00 0.00 0.00 2.10
322 323 4.561752 AGGCTGGGAAGTGATACTAAGAT 58.438 43.478 0.00 0.00 0.00 2.40
323 324 4.591072 AGGCTGGGAAGTGATACTAAGATC 59.409 45.833 0.00 0.00 0.00 2.75
324 325 4.345257 GGCTGGGAAGTGATACTAAGATCA 59.655 45.833 0.00 0.00 33.36 2.92
331 332 3.978687 GTGATACTAAGATCACCCCGTG 58.021 50.000 5.41 0.00 46.74 4.94
332 333 3.635373 GTGATACTAAGATCACCCCGTGA 59.365 47.826 5.41 0.00 46.74 4.35
345 346 4.664677 CGTGATCGGCCCGGATCC 62.665 72.222 15.59 0.00 41.71 3.36
354 355 3.616721 CCCGGATCCGCCCTACAG 61.617 72.222 29.12 12.79 38.24 2.74
355 356 3.616721 CCGGATCCGCCCTACAGG 61.617 72.222 29.12 8.54 38.24 4.00
356 357 2.520982 CGGATCCGCCCTACAGGA 60.521 66.667 23.37 0.00 41.30 3.86
357 358 2.565645 CGGATCCGCCCTACAGGAG 61.566 68.421 23.37 0.00 40.26 3.69
358 359 1.152525 GGATCCGCCCTACAGGAGA 60.153 63.158 0.00 0.00 40.26 3.71
359 360 1.182385 GGATCCGCCCTACAGGAGAG 61.182 65.000 0.00 0.00 40.26 3.20
360 361 0.178987 GATCCGCCCTACAGGAGAGA 60.179 60.000 0.00 0.00 40.26 3.10
361 362 0.485099 ATCCGCCCTACAGGAGAGAT 59.515 55.000 0.00 0.00 40.26 2.75
362 363 0.178987 TCCGCCCTACAGGAGAGATC 60.179 60.000 0.00 0.00 37.72 2.75
363 364 1.519751 CCGCCCTACAGGAGAGATCG 61.520 65.000 0.00 0.00 37.72 3.69
364 365 1.519751 CGCCCTACAGGAGAGATCGG 61.520 65.000 0.00 0.00 37.72 4.18
365 366 0.178987 GCCCTACAGGAGAGATCGGA 60.179 60.000 0.00 0.00 38.24 4.55
366 367 1.549037 GCCCTACAGGAGAGATCGGAT 60.549 57.143 0.00 0.00 38.24 4.18
367 368 2.166829 CCCTACAGGAGAGATCGGATG 58.833 57.143 0.00 0.00 38.24 3.51
368 369 2.224892 CCCTACAGGAGAGATCGGATGA 60.225 54.545 0.00 0.00 38.24 2.92
369 370 3.081061 CCTACAGGAGAGATCGGATGAG 58.919 54.545 0.00 0.00 37.39 2.90
370 371 1.993956 ACAGGAGAGATCGGATGAGG 58.006 55.000 0.00 0.00 0.00 3.86
371 372 1.255882 CAGGAGAGATCGGATGAGGG 58.744 60.000 0.00 0.00 0.00 4.30
372 373 1.153539 AGGAGAGATCGGATGAGGGA 58.846 55.000 0.00 0.00 0.00 4.20
373 374 1.501170 AGGAGAGATCGGATGAGGGAA 59.499 52.381 0.00 0.00 0.00 3.97
374 375 1.892474 GGAGAGATCGGATGAGGGAAG 59.108 57.143 0.00 0.00 0.00 3.46
375 376 1.892474 GAGAGATCGGATGAGGGAAGG 59.108 57.143 0.00 0.00 0.00 3.46
376 377 1.219213 AGAGATCGGATGAGGGAAGGT 59.781 52.381 0.00 0.00 0.00 3.50
377 378 1.342819 GAGATCGGATGAGGGAAGGTG 59.657 57.143 0.00 0.00 0.00 4.00
378 379 1.062886 AGATCGGATGAGGGAAGGTGA 60.063 52.381 0.00 0.00 0.00 4.02
379 380 1.762957 GATCGGATGAGGGAAGGTGAA 59.237 52.381 0.00 0.00 0.00 3.18
380 381 1.879575 TCGGATGAGGGAAGGTGAAT 58.120 50.000 0.00 0.00 0.00 2.57
381 382 3.040655 TCGGATGAGGGAAGGTGAATA 57.959 47.619 0.00 0.00 0.00 1.75
382 383 2.698797 TCGGATGAGGGAAGGTGAATAC 59.301 50.000 0.00 0.00 0.00 1.89
383 384 2.700897 CGGATGAGGGAAGGTGAATACT 59.299 50.000 0.00 0.00 0.00 2.12
384 385 3.243907 CGGATGAGGGAAGGTGAATACTC 60.244 52.174 0.00 0.00 0.00 2.59
385 386 3.711704 GGATGAGGGAAGGTGAATACTCA 59.288 47.826 0.00 0.00 39.05 3.41
386 387 4.164221 GGATGAGGGAAGGTGAATACTCAA 59.836 45.833 0.00 0.00 38.32 3.02
387 388 4.553330 TGAGGGAAGGTGAATACTCAAC 57.447 45.455 0.00 0.00 39.83 3.18
388 389 3.056107 TGAGGGAAGGTGAATACTCAACG 60.056 47.826 0.00 0.00 44.65 4.10
389 390 2.236395 AGGGAAGGTGAATACTCAACGG 59.764 50.000 0.00 0.00 44.65 4.44
390 391 2.007608 GGAAGGTGAATACTCAACGGC 58.992 52.381 0.00 0.00 44.65 5.68
391 392 2.614481 GGAAGGTGAATACTCAACGGCA 60.614 50.000 0.00 0.00 44.65 5.69
392 393 2.386661 AGGTGAATACTCAACGGCAG 57.613 50.000 0.00 0.00 44.65 4.85
393 394 0.727398 GGTGAATACTCAACGGCAGC 59.273 55.000 0.00 0.00 31.88 5.25
394 395 1.438651 GTGAATACTCAACGGCAGCA 58.561 50.000 0.00 0.00 31.88 4.41
395 396 2.009774 GTGAATACTCAACGGCAGCAT 58.990 47.619 0.00 0.00 31.88 3.79
396 397 2.009051 TGAATACTCAACGGCAGCATG 58.991 47.619 0.00 0.00 40.87 4.06
397 398 2.279741 GAATACTCAACGGCAGCATGA 58.720 47.619 0.00 0.00 39.69 3.07
398 399 1.945387 ATACTCAACGGCAGCATGAG 58.055 50.000 16.45 16.45 44.77 2.90
399 400 0.894835 TACTCAACGGCAGCATGAGA 59.105 50.000 22.13 8.64 42.48 3.27
400 401 0.251354 ACTCAACGGCAGCATGAGAT 59.749 50.000 22.13 9.05 42.48 2.75
401 402 0.935898 CTCAACGGCAGCATGAGATC 59.064 55.000 14.00 0.00 42.48 2.75
402 403 0.807275 TCAACGGCAGCATGAGATCG 60.807 55.000 0.00 0.00 39.69 3.69
403 404 2.176273 AACGGCAGCATGAGATCGC 61.176 57.895 0.00 0.00 39.69 4.58
404 405 3.344215 CGGCAGCATGAGATCGCC 61.344 66.667 0.00 0.00 39.69 5.54
405 406 2.203112 GGCAGCATGAGATCGCCA 60.203 61.111 0.00 0.00 42.50 5.69
406 407 2.541120 GGCAGCATGAGATCGCCAC 61.541 63.158 0.00 0.00 42.50 5.01
407 408 2.541120 GCAGCATGAGATCGCCACC 61.541 63.158 0.00 0.00 39.69 4.61
408 409 2.107750 AGCATGAGATCGCCACCG 59.892 61.111 0.00 0.00 0.00 4.94
409 410 2.969238 GCATGAGATCGCCACCGG 60.969 66.667 0.00 0.00 34.56 5.28
410 411 2.280389 CATGAGATCGCCACCGGG 60.280 66.667 6.32 0.00 34.56 5.73
411 412 2.443952 ATGAGATCGCCACCGGGA 60.444 61.111 6.32 0.00 35.59 5.14
412 413 2.502492 ATGAGATCGCCACCGGGAG 61.502 63.158 6.32 0.00 35.59 4.30
414 415 2.363795 AGATCGCCACCGGGAGAA 60.364 61.111 6.32 0.00 46.54 2.87
415 416 2.107141 GATCGCCACCGGGAGAAG 59.893 66.667 6.32 0.00 46.54 2.85
416 417 2.363795 ATCGCCACCGGGAGAAGA 60.364 61.111 6.32 0.00 46.54 2.87
417 418 1.956629 GATCGCCACCGGGAGAAGAA 61.957 60.000 6.32 0.00 46.54 2.52
418 419 1.550130 ATCGCCACCGGGAGAAGAAA 61.550 55.000 6.32 0.00 46.54 2.52
419 420 1.302192 CGCCACCGGGAGAAGAAAA 60.302 57.895 6.32 0.00 35.76 2.29
420 421 1.574702 CGCCACCGGGAGAAGAAAAC 61.575 60.000 6.32 0.00 35.76 2.43
421 422 1.241990 GCCACCGGGAGAAGAAAACC 61.242 60.000 6.32 0.00 35.59 3.27
422 423 0.608308 CCACCGGGAGAAGAAAACCC 60.608 60.000 6.32 0.00 40.17 4.11
423 424 0.400594 CACCGGGAGAAGAAAACCCT 59.599 55.000 6.32 0.00 41.28 4.34
424 425 0.400594 ACCGGGAGAAGAAAACCCTG 59.599 55.000 6.32 0.00 41.28 4.45
425 426 0.322546 CCGGGAGAAGAAAACCCTGG 60.323 60.000 0.00 0.00 41.28 4.45
426 427 0.960861 CGGGAGAAGAAAACCCTGGC 60.961 60.000 0.00 0.00 41.28 4.85
427 428 0.405973 GGGAGAAGAAAACCCTGGCT 59.594 55.000 0.00 0.00 40.39 4.75
428 429 1.633945 GGGAGAAGAAAACCCTGGCTA 59.366 52.381 0.00 0.00 40.39 3.93
429 430 2.356227 GGGAGAAGAAAACCCTGGCTAG 60.356 54.545 0.00 0.00 40.39 3.42
430 431 2.356227 GGAGAAGAAAACCCTGGCTAGG 60.356 54.545 9.64 9.64 44.18 3.02
442 443 2.761208 CCTGGCTAGGGGATAAGATACG 59.239 54.545 8.57 0.00 40.63 3.06
443 444 3.432378 CTGGCTAGGGGATAAGATACGT 58.568 50.000 0.00 0.00 0.00 3.57
444 445 3.162666 TGGCTAGGGGATAAGATACGTG 58.837 50.000 0.00 0.00 0.00 4.49
445 446 3.163467 GGCTAGGGGATAAGATACGTGT 58.837 50.000 0.00 0.00 0.00 4.49
446 447 4.202599 TGGCTAGGGGATAAGATACGTGTA 60.203 45.833 0.00 0.00 0.00 2.90
447 448 4.157472 GGCTAGGGGATAAGATACGTGTAC 59.843 50.000 0.00 0.00 0.00 2.90
448 449 4.142730 GCTAGGGGATAAGATACGTGTACG 60.143 50.000 0.00 2.43 46.33 3.67
449 450 2.555757 AGGGGATAAGATACGTGTACGC 59.444 50.000 0.00 0.00 44.43 4.42
450 451 2.294233 GGGGATAAGATACGTGTACGCA 59.706 50.000 7.29 0.00 44.43 5.24
451 452 3.057033 GGGGATAAGATACGTGTACGCAT 60.057 47.826 7.29 0.00 44.43 4.73
452 453 4.156556 GGGGATAAGATACGTGTACGCATA 59.843 45.833 7.29 0.00 44.43 3.14
453 454 5.163581 GGGGATAAGATACGTGTACGCATAT 60.164 44.000 7.29 0.21 44.43 1.78
454 455 6.327934 GGGATAAGATACGTGTACGCATATT 58.672 40.000 7.29 3.70 44.43 1.28
455 456 6.810182 GGGATAAGATACGTGTACGCATATTT 59.190 38.462 7.29 0.00 44.43 1.40
456 457 7.201410 GGGATAAGATACGTGTACGCATATTTG 60.201 40.741 7.29 0.00 44.43 2.32
457 458 7.539710 GGATAAGATACGTGTACGCATATTTGA 59.460 37.037 7.29 0.00 44.43 2.69
458 459 6.749216 AAGATACGTGTACGCATATTTGAG 57.251 37.500 7.29 0.00 44.43 3.02
459 460 5.220381 AGATACGTGTACGCATATTTGAGG 58.780 41.667 7.29 0.00 44.43 3.86
460 461 1.931172 ACGTGTACGCATATTTGAGGC 59.069 47.619 7.29 0.00 44.43 4.70
461 462 2.201732 CGTGTACGCATATTTGAGGCT 58.798 47.619 7.29 0.00 30.73 4.58
462 463 3.181484 ACGTGTACGCATATTTGAGGCTA 60.181 43.478 7.29 0.00 44.43 3.93
463 464 3.799963 CGTGTACGCATATTTGAGGCTAA 59.200 43.478 7.29 0.00 30.73 3.09
464 465 4.085055 CGTGTACGCATATTTGAGGCTAAG 60.085 45.833 7.29 0.00 30.73 2.18
465 466 4.809426 GTGTACGCATATTTGAGGCTAAGT 59.191 41.667 0.39 0.00 30.73 2.24
466 467 4.808895 TGTACGCATATTTGAGGCTAAGTG 59.191 41.667 0.00 0.00 30.73 3.16
471 472 5.611374 GCATATTTGAGGCTAAGTGGACTA 58.389 41.667 0.00 0.00 0.00 2.59
572 575 1.843368 ATCATGGGCTTTGGTGTCAG 58.157 50.000 0.00 0.00 0.00 3.51
578 581 1.620822 GGCTTTGGTGTCAGAATGGT 58.379 50.000 0.00 0.00 36.16 3.55
585 588 1.614051 GGTGTCAGAATGGTCATGGCA 60.614 52.381 0.00 0.00 36.16 4.92
636 643 1.135333 GAGAACGGAGCCCTTCTGTAG 59.865 57.143 5.65 0.00 44.76 2.74
637 644 0.460459 GAACGGAGCCCTTCTGTAGC 60.460 60.000 0.00 0.00 44.76 3.58
690 698 2.947652 CGTCTAACATCCCGTCCTTCTA 59.052 50.000 0.00 0.00 0.00 2.10
780 788 2.095604 ATCAGTCTAGGGCTTCCTCC 57.904 55.000 0.00 0.00 41.96 4.30
781 789 0.032017 TCAGTCTAGGGCTTCCTCCC 60.032 60.000 0.00 0.00 46.93 4.30
898 1168 1.002792 GTTTCGCGCCAAAAGAGAAGT 60.003 47.619 0.56 0.00 0.00 3.01
911 1181 1.677637 GAGAAGTACCTCCCCTGCGG 61.678 65.000 0.00 0.00 0.00 5.69
1021 1299 4.831307 CGCTCCGGTTCGAGGTCG 62.831 72.222 11.58 0.00 41.45 4.79
1038 1316 3.073356 AGGTCGGTCCAAGTTTTAATGGA 59.927 43.478 0.00 0.00 43.32 3.41
1039 1317 4.014406 GGTCGGTCCAAGTTTTAATGGAT 58.986 43.478 0.00 0.00 46.78 3.41
1040 1318 5.045432 AGGTCGGTCCAAGTTTTAATGGATA 60.045 40.000 0.00 0.00 46.78 2.59
1076 1354 4.564372 TCGCTTTCTCTTCGAGATTTCATG 59.436 41.667 0.00 0.00 38.56 3.07
1129 1407 4.812091 CCTGAGATTGAGATGAGAAGCAAG 59.188 45.833 0.00 0.00 0.00 4.01
1479 1771 3.823873 TGGTACTGTATTTGGTGCCTTTG 59.176 43.478 0.00 0.00 38.66 2.77
1702 2010 5.163248 TGTCAAACCTCATTACCTCTGTTGA 60.163 40.000 0.00 0.00 0.00 3.18
2089 2397 4.876107 GTGACTTGAATGGATAATGTCGGT 59.124 41.667 0.00 0.00 0.00 4.69
2126 2434 6.581542 GCTGATGAATAATGTTCTAGCATTGC 59.418 38.462 0.00 0.00 39.20 3.56
2257 2571 4.549458 CTTGGCTGTACTTGTTTCCATTG 58.451 43.478 0.00 0.00 0.00 2.82
2304 2618 8.680903 GTGATTAAGAGATTTTGGATGTGACAT 58.319 33.333 0.00 0.00 0.00 3.06
2326 2640 6.527722 ACATAAATTTGTCGAATGATGTGTGC 59.472 34.615 0.00 0.00 35.44 4.57
2374 2688 9.586435 TTCTTGTTTCATTCCTCTTTCTTTTTC 57.414 29.630 0.00 0.00 0.00 2.29
2537 2851 9.748708 CTTCACAAGTTTATGAATTGGAAAAGA 57.251 29.630 0.81 0.00 34.43 2.52
2825 3143 6.492007 AGTTGCTCTACACATCAAATCTTG 57.508 37.500 0.00 0.00 0.00 3.02
3674 4084 6.961359 ATGTTGATTTTCATGTTGATGCTG 57.039 33.333 0.00 0.00 0.00 4.41
3763 4173 1.618837 CTTGTTTCTCTCGGTCCCTGA 59.381 52.381 0.00 0.00 0.00 3.86
3781 4191 4.458989 CCCTGAATAAACTTTACTGCTGCA 59.541 41.667 0.88 0.88 0.00 4.41
3892 4302 1.554617 TGACGCCTGAGGAATCAATCA 59.445 47.619 0.65 0.00 0.00 2.57
3914 4324 6.288294 TCAATATTCAGGTATGTCCTTTCCG 58.712 40.000 0.00 0.00 45.67 4.30
3928 4338 3.310501 TCCTTTCCGTGACGAACTTTTTC 59.689 43.478 6.54 0.00 0.00 2.29
3960 4370 6.033341 CACTGTGAACTAGACTTCTGCTATC 58.967 44.000 0.32 0.00 0.00 2.08
4557 4969 1.761174 GTGAGGGGCTTGGTTGAGA 59.239 57.895 0.00 0.00 0.00 3.27
4648 5060 6.640137 CAGCCAAAAGATCTTTTTCGTTTTC 58.360 36.000 27.08 12.76 40.45 2.29
4652 5064 6.705825 CCAAAAGATCTTTTTCGTTTTCCCAT 59.294 34.615 27.08 2.84 40.45 4.00
5184 5607 4.460948 AGCTGGGTGAAGCATTTTATTG 57.539 40.909 0.00 0.00 46.08 1.90
5318 5765 2.027377 ACATCCTCTGTGCTTTCCTCAG 60.027 50.000 0.00 0.00 36.48 3.35
5605 6074 7.654568 AGTTCCTTTAACTTTAATTCCCGTTG 58.345 34.615 0.00 0.00 46.61 4.10
5616 6085 9.801873 ACTTTAATTCCCGTTGATGATTTATTG 57.198 29.630 0.00 0.00 0.00 1.90
5622 6091 7.083875 TCCCGTTGATGATTTATTGAACTTC 57.916 36.000 0.00 0.00 0.00 3.01
5953 6422 3.732721 GCTGAGTTGTTCATTTTGAGCAC 59.267 43.478 0.00 0.00 37.33 4.40
6162 6631 0.954452 CTTGAGGGTGCAGGTTTGTC 59.046 55.000 0.00 0.00 0.00 3.18
6272 6741 9.499479 CAATCATCTACAGAGCTAAAACCATAT 57.501 33.333 0.00 0.00 0.00 1.78
6353 6826 0.251787 GATGGCAGTTCCCAAAGGGT 60.252 55.000 1.36 0.00 44.74 4.34
6389 6862 2.094545 GGTTCACAATGCAATGGAGGTC 60.095 50.000 6.73 0.00 0.00 3.85
6455 6928 2.437359 GACGCAATGGAGGCTGCT 60.437 61.111 7.74 0.00 36.38 4.24
6467 6940 2.202743 GCTGCTGGCGTCGACATA 60.203 61.111 17.16 0.00 0.00 2.29
6482 6955 0.389391 ACATATCGGAGTTCTGCCCG 59.611 55.000 0.00 0.00 46.57 6.13
6504 6977 4.864334 CCAGATGCCCCTGACGCC 62.864 72.222 4.24 0.00 36.29 5.68
6538 7011 4.326826 AGCATTCATTATGGATACCACGG 58.673 43.478 0.00 0.00 35.80 4.94
6542 7015 8.036423 GCATTCATTATGGATACCACGGTACG 62.036 46.154 0.00 0.00 46.48 3.67
6567 7040 1.829222 GACGATAGGGAAGGGTTGTCA 59.171 52.381 0.00 0.00 43.77 3.58
6642 7120 2.667470 GGTCATAGACTGTAGGCCTGA 58.333 52.381 17.99 0.00 32.47 3.86
6653 7131 1.410882 GTAGGCCTGACTCTCATCCAC 59.589 57.143 17.99 0.00 0.00 4.02
6737 7400 6.041069 AGTCTCCAAGGTGTTATAGTATCTGC 59.959 42.308 0.00 0.00 0.00 4.26
6758 7421 3.395639 CCATTGATTGTTTGCAAGCTGT 58.604 40.909 14.67 2.92 41.21 4.40
6838 7503 2.731217 ACTCACGAAAATTGTTGCTGC 58.269 42.857 0.00 0.00 0.00 5.25
6841 7506 2.031245 TCACGAAAATTGTTGCTGCGAT 60.031 40.909 0.00 0.00 0.00 4.58
6865 7530 5.163426 TGCAGGTCATTTTGTTTCACTGATT 60.163 36.000 0.00 0.00 0.00 2.57
6866 7531 6.040278 TGCAGGTCATTTTGTTTCACTGATTA 59.960 34.615 0.00 0.00 0.00 1.75
6924 7589 3.924114 TTGTCCAAACTCTGGTCTTCA 57.076 42.857 0.00 0.00 46.51 3.02
6986 7651 4.050553 TCTTTGCAATGCTTAGTGTTTGC 58.949 39.130 6.82 8.28 43.60 3.68
7069 7734 2.228822 GTGGGAAATGTGTGCGATCTTT 59.771 45.455 0.00 0.00 0.00 2.52
7116 7781 1.613925 GGATCGTCCAATCCTCATCGA 59.386 52.381 0.00 0.00 41.78 3.59
7171 7836 2.420043 CACGTGTCGACCCCTTGT 59.580 61.111 14.12 1.22 0.00 3.16
7174 7839 1.068417 CGTGTCGACCCCTTGTTGA 59.932 57.895 14.12 0.00 34.87 3.18
7250 8130 4.383861 CTCAGCTCAGCCGCACCA 62.384 66.667 0.00 0.00 0.00 4.17
7279 8159 0.889186 GCACCAACACAGATTCCGGT 60.889 55.000 0.00 0.00 0.00 5.28
7320 8200 0.961358 CGAGCCCTAGTATCTCCCGG 60.961 65.000 0.00 0.00 0.00 5.73
7394 8276 4.758251 CGGACGCCCAGCACATGA 62.758 66.667 0.00 0.00 0.00 3.07
7397 8279 3.899981 GACGCCCAGCACATGACCA 62.900 63.158 0.00 0.00 0.00 4.02
7417 8299 3.228188 ACACATGTCAGTGGGTGAAAT 57.772 42.857 0.00 0.00 43.72 2.17
7419 8301 3.148412 CACATGTCAGTGGGTGAAATCA 58.852 45.455 0.00 0.00 36.74 2.57
7420 8302 3.760151 CACATGTCAGTGGGTGAAATCAT 59.240 43.478 0.00 0.00 36.74 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.447853 ACATGTTGGGGAACGTAGTATTTAAAA 59.552 33.333 0.00 0.00 45.00 1.52
5 6 4.913784 ACATGTTGGGGAACGTAGTATTT 58.086 39.130 0.00 0.00 45.00 1.40
8 9 4.141892 CCATACATGTTGGGGAACGTAGTA 60.142 45.833 2.30 0.00 45.00 1.82
9 10 6.964088 GCCATACATGTTGGGGAACGTAGT 62.964 50.000 21.19 0.00 37.18 2.73
10 11 3.202906 CCATACATGTTGGGGAACGTAG 58.797 50.000 2.30 0.00 0.00 3.51
13 14 0.738389 GCCATACATGTTGGGGAACG 59.262 55.000 21.19 0.00 34.66 3.95
14 15 2.143876 AGCCATACATGTTGGGGAAC 57.856 50.000 21.19 9.96 34.66 3.62
15 16 2.225242 ACAAGCCATACATGTTGGGGAA 60.225 45.455 21.19 0.00 34.66 3.97
16 17 1.357420 ACAAGCCATACATGTTGGGGA 59.643 47.619 21.19 0.00 34.66 4.81
17 18 1.750778 GACAAGCCATACATGTTGGGG 59.249 52.381 21.19 14.42 34.66 4.96
18 19 2.726821 AGACAAGCCATACATGTTGGG 58.273 47.619 21.19 16.41 34.66 4.12
19 20 4.883585 ACATAGACAAGCCATACATGTTGG 59.116 41.667 17.67 17.67 37.31 3.77
20 21 5.585844 TCACATAGACAAGCCATACATGTTG 59.414 40.000 2.30 2.25 28.28 3.33
21 22 5.744171 TCACATAGACAAGCCATACATGTT 58.256 37.500 2.30 0.00 28.28 2.71
22 23 5.357742 TCACATAGACAAGCCATACATGT 57.642 39.130 2.69 2.69 31.55 3.21
23 24 5.819379 AGTTCACATAGACAAGCCATACATG 59.181 40.000 0.00 0.00 0.00 3.21
24 25 5.994250 AGTTCACATAGACAAGCCATACAT 58.006 37.500 0.00 0.00 0.00 2.29
25 26 5.187772 AGAGTTCACATAGACAAGCCATACA 59.812 40.000 0.00 0.00 0.00 2.29
26 27 5.665459 AGAGTTCACATAGACAAGCCATAC 58.335 41.667 0.00 0.00 0.00 2.39
27 28 5.939764 AGAGTTCACATAGACAAGCCATA 57.060 39.130 0.00 0.00 0.00 2.74
28 29 4.833478 AGAGTTCACATAGACAAGCCAT 57.167 40.909 0.00 0.00 0.00 4.40
29 30 4.382040 GCTAGAGTTCACATAGACAAGCCA 60.382 45.833 0.00 0.00 0.00 4.75
30 31 4.116238 GCTAGAGTTCACATAGACAAGCC 58.884 47.826 0.00 0.00 0.00 4.35
31 32 4.116238 GGCTAGAGTTCACATAGACAAGC 58.884 47.826 0.00 0.00 0.00 4.01
32 33 5.105752 GTGGCTAGAGTTCACATAGACAAG 58.894 45.833 0.00 0.00 36.34 3.16
33 34 4.081642 GGTGGCTAGAGTTCACATAGACAA 60.082 45.833 0.00 0.00 36.34 3.18
34 35 3.447586 GGTGGCTAGAGTTCACATAGACA 59.552 47.826 0.00 0.00 32.10 3.41
35 36 3.489398 CGGTGGCTAGAGTTCACATAGAC 60.489 52.174 0.00 0.00 33.45 2.59
36 37 2.688446 CGGTGGCTAGAGTTCACATAGA 59.312 50.000 0.00 0.00 33.45 1.98
37 38 2.799917 GCGGTGGCTAGAGTTCACATAG 60.800 54.545 0.00 0.00 35.83 2.23
38 39 1.136305 GCGGTGGCTAGAGTTCACATA 59.864 52.381 0.00 0.00 35.83 2.29
39 40 0.108138 GCGGTGGCTAGAGTTCACAT 60.108 55.000 0.00 0.00 35.83 3.21
40 41 1.292223 GCGGTGGCTAGAGTTCACA 59.708 57.895 0.00 0.00 35.83 3.58
41 42 1.448013 GGCGGTGGCTAGAGTTCAC 60.448 63.158 0.00 0.00 39.81 3.18
42 43 1.264749 ATGGCGGTGGCTAGAGTTCA 61.265 55.000 0.00 0.00 39.81 3.18
43 44 0.530870 GATGGCGGTGGCTAGAGTTC 60.531 60.000 0.00 0.00 39.81 3.01
44 45 1.522569 GATGGCGGTGGCTAGAGTT 59.477 57.895 0.00 0.00 39.81 3.01
45 46 2.435693 GGATGGCGGTGGCTAGAGT 61.436 63.158 0.00 0.00 39.81 3.24
46 47 2.423446 GGATGGCGGTGGCTAGAG 59.577 66.667 0.00 0.00 39.81 2.43
47 48 2.364973 TGGATGGCGGTGGCTAGA 60.365 61.111 0.00 0.00 39.81 2.43
48 49 2.203070 GTGGATGGCGGTGGCTAG 60.203 66.667 0.00 0.00 39.81 3.42
49 50 2.882403 TAGGTGGATGGCGGTGGCTA 62.882 60.000 0.00 0.00 39.81 3.93
51 52 3.757248 CTAGGTGGATGGCGGTGGC 62.757 68.421 0.00 0.00 38.90 5.01
52 53 2.505982 CTAGGTGGATGGCGGTGG 59.494 66.667 0.00 0.00 0.00 4.61
53 54 2.203070 GCTAGGTGGATGGCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
54 55 2.365635 AGCTAGGTGGATGGCGGT 60.366 61.111 0.00 0.00 0.00 5.68
55 56 2.109799 CAGCTAGGTGGATGGCGG 59.890 66.667 14.29 0.00 0.00 6.13
56 57 2.590007 GCAGCTAGGTGGATGGCG 60.590 66.667 22.69 0.00 0.00 5.69
57 58 2.203266 GGCAGCTAGGTGGATGGC 60.203 66.667 22.69 8.27 40.59 4.40
58 59 1.449353 GAGGCAGCTAGGTGGATGG 59.551 63.158 22.69 0.00 0.00 3.51
59 60 1.449353 GGAGGCAGCTAGGTGGATG 59.551 63.158 22.69 0.00 0.00 3.51
60 61 2.136878 CGGAGGCAGCTAGGTGGAT 61.137 63.158 22.69 0.00 0.00 3.41
61 62 2.759973 CGGAGGCAGCTAGGTGGA 60.760 66.667 22.69 0.00 0.00 4.02
62 63 3.854669 CCGGAGGCAGCTAGGTGG 61.855 72.222 22.69 6.15 46.14 4.61
74 75 3.530910 AAAGGACGCACCACCGGAG 62.531 63.158 9.46 0.00 42.04 4.63
75 76 2.999739 GAAAAGGACGCACCACCGGA 63.000 60.000 9.46 0.00 42.04 5.14
76 77 2.593436 AAAAGGACGCACCACCGG 60.593 61.111 0.00 0.00 42.04 5.28
77 78 2.943653 GAAAAGGACGCACCACCG 59.056 61.111 2.21 0.00 42.04 4.94
78 79 1.838568 GACGAAAAGGACGCACCACC 61.839 60.000 0.00 0.00 42.04 4.61
79 80 1.155424 TGACGAAAAGGACGCACCAC 61.155 55.000 0.00 0.00 42.04 4.16
80 81 0.462225 TTGACGAAAAGGACGCACCA 60.462 50.000 0.00 0.00 42.04 4.17
81 82 0.658897 TTTGACGAAAAGGACGCACC 59.341 50.000 0.00 0.00 39.35 5.01
82 83 1.595794 TCTTTGACGAAAAGGACGCAC 59.404 47.619 12.99 0.00 44.69 5.34
83 84 1.595794 GTCTTTGACGAAAAGGACGCA 59.404 47.619 12.99 0.00 44.69 5.24
84 85 2.296012 GTCTTTGACGAAAAGGACGC 57.704 50.000 12.99 0.00 44.69 5.19
95 96 3.997021 ACCTTGATGATGTCGTCTTTGAC 59.003 43.478 4.08 0.00 39.37 3.18
96 97 4.021104 AGACCTTGATGATGTCGTCTTTGA 60.021 41.667 4.08 0.00 34.24 2.69
97 98 4.248859 AGACCTTGATGATGTCGTCTTTG 58.751 43.478 4.08 0.00 34.24 2.77
98 99 4.543590 AGACCTTGATGATGTCGTCTTT 57.456 40.909 4.08 0.00 34.24 2.52
99 100 4.499183 GAAGACCTTGATGATGTCGTCTT 58.501 43.478 0.00 0.00 41.84 3.01
100 101 3.118956 GGAAGACCTTGATGATGTCGTCT 60.119 47.826 4.08 0.00 37.56 4.18
101 102 3.118956 AGGAAGACCTTGATGATGTCGTC 60.119 47.826 0.00 0.00 45.36 4.20
102 103 2.834549 AGGAAGACCTTGATGATGTCGT 59.165 45.455 0.00 0.00 45.36 4.34
103 104 3.533606 AGGAAGACCTTGATGATGTCG 57.466 47.619 0.00 0.00 45.36 4.35
122 123 4.821589 GAGTTGGGGCTCCGCGAG 62.822 72.222 8.23 4.18 35.24 5.03
126 127 4.785453 GGCTGAGTTGGGGCTCCG 62.785 72.222 0.00 0.00 34.74 4.63
127 128 3.210012 TTGGCTGAGTTGGGGCTCC 62.210 63.158 0.00 0.00 34.74 4.70
128 129 1.973812 GTTGGCTGAGTTGGGGCTC 60.974 63.158 0.00 0.00 36.12 4.70
129 130 2.085343 ATGTTGGCTGAGTTGGGGCT 62.085 55.000 0.00 0.00 0.00 5.19
130 131 1.598701 GATGTTGGCTGAGTTGGGGC 61.599 60.000 0.00 0.00 0.00 5.80
131 132 0.038744 AGATGTTGGCTGAGTTGGGG 59.961 55.000 0.00 0.00 0.00 4.96
132 133 1.815003 GAAGATGTTGGCTGAGTTGGG 59.185 52.381 0.00 0.00 0.00 4.12
133 134 2.746362 GAGAAGATGTTGGCTGAGTTGG 59.254 50.000 0.00 0.00 0.00 3.77
134 135 2.746362 GGAGAAGATGTTGGCTGAGTTG 59.254 50.000 0.00 0.00 0.00 3.16
135 136 2.373169 TGGAGAAGATGTTGGCTGAGTT 59.627 45.455 0.00 0.00 0.00 3.01
136 137 1.980765 TGGAGAAGATGTTGGCTGAGT 59.019 47.619 0.00 0.00 0.00 3.41
137 138 2.289882 TGTGGAGAAGATGTTGGCTGAG 60.290 50.000 0.00 0.00 0.00 3.35
138 139 1.699083 TGTGGAGAAGATGTTGGCTGA 59.301 47.619 0.00 0.00 0.00 4.26
139 140 2.189594 TGTGGAGAAGATGTTGGCTG 57.810 50.000 0.00 0.00 0.00 4.85
140 141 2.575279 AGATGTGGAGAAGATGTTGGCT 59.425 45.455 0.00 0.00 0.00 4.75
141 142 2.681848 CAGATGTGGAGAAGATGTTGGC 59.318 50.000 0.00 0.00 0.00 4.52
142 143 3.937706 GTCAGATGTGGAGAAGATGTTGG 59.062 47.826 0.00 0.00 0.00 3.77
143 144 3.615937 CGTCAGATGTGGAGAAGATGTTG 59.384 47.826 0.00 0.00 0.00 3.33
144 145 3.854666 CGTCAGATGTGGAGAAGATGTT 58.145 45.455 0.00 0.00 0.00 2.71
145 146 2.417924 GCGTCAGATGTGGAGAAGATGT 60.418 50.000 0.00 0.00 0.00 3.06
146 147 2.200067 GCGTCAGATGTGGAGAAGATG 58.800 52.381 0.00 0.00 0.00 2.90
147 148 1.202348 CGCGTCAGATGTGGAGAAGAT 60.202 52.381 0.00 0.00 0.00 2.40
148 149 0.171231 CGCGTCAGATGTGGAGAAGA 59.829 55.000 0.00 0.00 0.00 2.87
149 150 0.803768 CCGCGTCAGATGTGGAGAAG 60.804 60.000 16.37 0.00 36.92 2.85
150 151 1.215382 CCGCGTCAGATGTGGAGAA 59.785 57.895 16.37 0.00 36.92 2.87
151 152 1.248101 TTCCGCGTCAGATGTGGAGA 61.248 55.000 21.72 12.25 43.88 3.71
152 153 1.078759 GTTCCGCGTCAGATGTGGAG 61.079 60.000 21.72 0.00 43.88 3.86
153 154 1.080093 GTTCCGCGTCAGATGTGGA 60.080 57.895 19.49 19.49 41.68 4.02
154 155 1.079819 AGTTCCGCGTCAGATGTGG 60.080 57.895 15.36 15.36 36.12 4.17
155 156 1.354337 CCAGTTCCGCGTCAGATGTG 61.354 60.000 4.92 0.00 0.00 3.21
156 157 1.079819 CCAGTTCCGCGTCAGATGT 60.080 57.895 4.92 0.00 0.00 3.06
157 158 0.389817 TTCCAGTTCCGCGTCAGATG 60.390 55.000 4.92 0.00 0.00 2.90
158 159 0.389948 GTTCCAGTTCCGCGTCAGAT 60.390 55.000 4.92 0.00 0.00 2.90
159 160 1.006571 GTTCCAGTTCCGCGTCAGA 60.007 57.895 4.92 0.00 0.00 3.27
160 161 1.006102 AGTTCCAGTTCCGCGTCAG 60.006 57.895 4.92 0.00 0.00 3.51
161 162 1.006571 GAGTTCCAGTTCCGCGTCA 60.007 57.895 4.92 0.00 0.00 4.35
162 163 2.087009 CGAGTTCCAGTTCCGCGTC 61.087 63.158 4.92 0.00 0.00 5.19
163 164 2.049433 CGAGTTCCAGTTCCGCGT 60.049 61.111 4.92 0.00 0.00 6.01
164 165 1.344942 CTTCGAGTTCCAGTTCCGCG 61.345 60.000 0.00 0.00 0.00 6.46
165 166 1.627550 GCTTCGAGTTCCAGTTCCGC 61.628 60.000 0.00 0.00 0.00 5.54
166 167 1.014564 GGCTTCGAGTTCCAGTTCCG 61.015 60.000 0.00 0.00 0.00 4.30
167 168 0.321996 AGGCTTCGAGTTCCAGTTCC 59.678 55.000 3.14 0.00 0.00 3.62
168 169 1.433534 CAGGCTTCGAGTTCCAGTTC 58.566 55.000 0.00 0.00 0.00 3.01
169 170 0.035458 CCAGGCTTCGAGTTCCAGTT 59.965 55.000 0.00 0.00 0.00 3.16
170 171 1.122019 ACCAGGCTTCGAGTTCCAGT 61.122 55.000 0.00 0.00 0.00 4.00
171 172 0.035458 AACCAGGCTTCGAGTTCCAG 59.965 55.000 0.00 0.00 0.00 3.86
172 173 0.250295 CAACCAGGCTTCGAGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
173 174 0.955919 CCAACCAGGCTTCGAGTTCC 60.956 60.000 0.00 0.00 0.00 3.62
174 175 0.250338 ACCAACCAGGCTTCGAGTTC 60.250 55.000 0.00 0.00 43.14 3.01
175 176 0.250338 GACCAACCAGGCTTCGAGTT 60.250 55.000 0.00 0.00 43.14 3.01
176 177 1.371558 GACCAACCAGGCTTCGAGT 59.628 57.895 0.00 0.00 43.14 4.18
177 178 1.376037 GGACCAACCAGGCTTCGAG 60.376 63.158 0.00 0.00 43.14 4.04
178 179 1.415672 AAGGACCAACCAGGCTTCGA 61.416 55.000 0.00 0.00 43.14 3.71
179 180 1.073199 AAGGACCAACCAGGCTTCG 59.927 57.895 0.00 0.00 43.14 3.79
180 181 0.110486 TCAAGGACCAACCAGGCTTC 59.890 55.000 0.00 0.00 43.14 3.86
181 182 0.779997 ATCAAGGACCAACCAGGCTT 59.220 50.000 0.00 0.00 43.14 4.35
182 183 0.329596 GATCAAGGACCAACCAGGCT 59.670 55.000 0.00 0.00 43.14 4.58
183 184 0.681243 GGATCAAGGACCAACCAGGC 60.681 60.000 0.00 0.00 43.14 4.85
184 185 0.034089 GGGATCAAGGACCAACCAGG 60.034 60.000 0.00 0.00 45.67 4.45
185 186 0.698238 TGGGATCAAGGACCAACCAG 59.302 55.000 0.00 0.00 42.04 4.00
186 187 1.284785 GATGGGATCAAGGACCAACCA 59.715 52.381 0.00 0.00 42.04 3.67
187 188 1.747206 CGATGGGATCAAGGACCAACC 60.747 57.143 0.00 0.00 37.89 3.77
188 189 1.668419 CGATGGGATCAAGGACCAAC 58.332 55.000 0.00 0.00 37.89 3.77
189 190 0.107214 GCGATGGGATCAAGGACCAA 60.107 55.000 0.00 0.00 37.89 3.67
190 191 1.526887 GCGATGGGATCAAGGACCA 59.473 57.895 0.00 0.00 38.88 4.02
191 192 1.227973 GGCGATGGGATCAAGGACC 60.228 63.158 0.00 0.00 0.00 4.46
192 193 1.595382 CGGCGATGGGATCAAGGAC 60.595 63.158 0.00 0.00 0.00 3.85
193 194 2.821685 CGGCGATGGGATCAAGGA 59.178 61.111 0.00 0.00 0.00 3.36
194 195 2.974698 GCGGCGATGGGATCAAGG 60.975 66.667 12.98 0.00 0.00 3.61
195 196 1.375853 TTTGCGGCGATGGGATCAAG 61.376 55.000 12.98 0.00 0.00 3.02
196 197 1.377856 TTTGCGGCGATGGGATCAA 60.378 52.632 12.98 0.00 0.00 2.57
197 198 2.112198 GTTTGCGGCGATGGGATCA 61.112 57.895 12.98 0.00 0.00 2.92
198 199 2.112198 TGTTTGCGGCGATGGGATC 61.112 57.895 12.98 0.00 0.00 3.36
199 200 2.045438 TGTTTGCGGCGATGGGAT 60.045 55.556 12.98 0.00 0.00 3.85
200 201 3.053291 GTGTTTGCGGCGATGGGA 61.053 61.111 12.98 0.00 0.00 4.37
201 202 2.625823 AAGTGTTTGCGGCGATGGG 61.626 57.895 12.98 0.00 0.00 4.00
202 203 1.442520 CAAGTGTTTGCGGCGATGG 60.443 57.895 12.98 0.00 0.00 3.51
203 204 0.040514 TTCAAGTGTTTGCGGCGATG 60.041 50.000 12.98 0.00 34.21 3.84
204 205 0.040425 GTTCAAGTGTTTGCGGCGAT 60.040 50.000 12.98 0.00 34.21 4.58
205 206 1.353804 GTTCAAGTGTTTGCGGCGA 59.646 52.632 12.98 0.00 34.21 5.54
206 207 1.657181 GGTTCAAGTGTTTGCGGCG 60.657 57.895 0.51 0.51 34.21 6.46
207 208 1.299850 GGGTTCAAGTGTTTGCGGC 60.300 57.895 0.00 0.00 34.21 6.53
208 209 1.362355 GGGGTTCAAGTGTTTGCGG 59.638 57.895 0.00 0.00 34.21 5.69
209 210 0.030638 CTGGGGTTCAAGTGTTTGCG 59.969 55.000 0.00 0.00 34.21 4.85
210 211 0.249447 GCTGGGGTTCAAGTGTTTGC 60.249 55.000 0.00 0.00 34.21 3.68
211 212 0.389025 GGCTGGGGTTCAAGTGTTTG 59.611 55.000 0.00 0.00 35.57 2.93
212 213 0.759060 GGGCTGGGGTTCAAGTGTTT 60.759 55.000 0.00 0.00 0.00 2.83
213 214 1.152546 GGGCTGGGGTTCAAGTGTT 60.153 57.895 0.00 0.00 0.00 3.32
214 215 2.520968 GGGCTGGGGTTCAAGTGT 59.479 61.111 0.00 0.00 0.00 3.55
215 216 2.672996 CGGGCTGGGGTTCAAGTG 60.673 66.667 0.00 0.00 0.00 3.16
216 217 3.175710 ACGGGCTGGGGTTCAAGT 61.176 61.111 0.00 0.00 0.00 3.16
217 218 2.484287 ATCACGGGCTGGGGTTCAAG 62.484 60.000 0.00 0.00 0.00 3.02
218 219 1.202099 TATCACGGGCTGGGGTTCAA 61.202 55.000 0.00 0.00 0.00 2.69
219 220 1.613928 TATCACGGGCTGGGGTTCA 60.614 57.895 0.00 0.00 0.00 3.18
220 221 1.146263 CTATCACGGGCTGGGGTTC 59.854 63.158 0.00 0.00 0.00 3.62
221 222 0.912487 TTCTATCACGGGCTGGGGTT 60.912 55.000 0.00 0.00 0.00 4.11
222 223 0.912487 TTTCTATCACGGGCTGGGGT 60.912 55.000 0.00 0.00 0.00 4.95
223 224 0.254747 TTTTCTATCACGGGCTGGGG 59.745 55.000 0.00 0.00 0.00 4.96
224 225 1.379527 GTTTTCTATCACGGGCTGGG 58.620 55.000 0.00 0.00 0.00 4.45
225 226 1.006832 CGTTTTCTATCACGGGCTGG 58.993 55.000 0.00 0.00 32.58 4.85
226 227 2.004583 TCGTTTTCTATCACGGGCTG 57.995 50.000 0.00 0.00 37.02 4.85
227 228 2.798499 CGATCGTTTTCTATCACGGGCT 60.798 50.000 7.03 0.00 37.02 5.19
228 229 1.521423 CGATCGTTTTCTATCACGGGC 59.479 52.381 7.03 0.00 37.02 6.13
229 230 2.124903 CCGATCGTTTTCTATCACGGG 58.875 52.381 15.09 0.00 37.02 5.28
230 231 2.124903 CCCGATCGTTTTCTATCACGG 58.875 52.381 15.09 0.00 37.02 4.94
231 232 1.521423 GCCCGATCGTTTTCTATCACG 59.479 52.381 15.09 0.00 37.77 4.35
232 233 1.865340 GGCCCGATCGTTTTCTATCAC 59.135 52.381 15.09 0.00 0.00 3.06
233 234 1.760613 AGGCCCGATCGTTTTCTATCA 59.239 47.619 15.09 0.00 0.00 2.15
234 235 2.528041 AGGCCCGATCGTTTTCTATC 57.472 50.000 15.09 0.00 0.00 2.08
235 236 2.169769 TCAAGGCCCGATCGTTTTCTAT 59.830 45.455 15.09 0.00 0.00 1.98
236 237 1.551430 TCAAGGCCCGATCGTTTTCTA 59.449 47.619 15.09 0.00 0.00 2.10
237 238 0.323629 TCAAGGCCCGATCGTTTTCT 59.676 50.000 15.09 3.16 0.00 2.52
238 239 0.727398 CTCAAGGCCCGATCGTTTTC 59.273 55.000 15.09 0.73 0.00 2.29
239 240 0.323629 TCTCAAGGCCCGATCGTTTT 59.676 50.000 15.09 0.00 0.00 2.43
240 241 0.323629 TTCTCAAGGCCCGATCGTTT 59.676 50.000 15.09 0.06 0.00 3.60
241 242 0.391263 GTTCTCAAGGCCCGATCGTT 60.391 55.000 15.09 0.00 0.00 3.85
242 243 1.218316 GTTCTCAAGGCCCGATCGT 59.782 57.895 15.09 0.00 0.00 3.73
243 244 0.744874 TAGTTCTCAAGGCCCGATCG 59.255 55.000 8.51 8.51 0.00 3.69
244 245 2.552031 GTTAGTTCTCAAGGCCCGATC 58.448 52.381 0.00 0.00 0.00 3.69
245 246 1.209747 GGTTAGTTCTCAAGGCCCGAT 59.790 52.381 0.00 0.00 0.00 4.18
246 247 0.611714 GGTTAGTTCTCAAGGCCCGA 59.388 55.000 0.00 0.00 0.00 5.14
247 248 0.392595 GGGTTAGTTCTCAAGGCCCG 60.393 60.000 0.00 0.00 0.00 6.13
248 249 0.992695 AGGGTTAGTTCTCAAGGCCC 59.007 55.000 0.00 0.00 35.04 5.80
249 250 2.420269 GCTAGGGTTAGTTCTCAAGGCC 60.420 54.545 0.00 0.00 0.00 5.19
250 251 2.502130 AGCTAGGGTTAGTTCTCAAGGC 59.498 50.000 0.00 0.00 0.00 4.35
251 252 4.027437 AGAGCTAGGGTTAGTTCTCAAGG 58.973 47.826 0.00 0.00 41.86 3.61
256 257 2.025131 ACGGAGAGCTAGGGTTAGTTCT 60.025 50.000 1.30 1.30 46.35 3.01
257 258 2.377073 ACGGAGAGCTAGGGTTAGTTC 58.623 52.381 0.00 0.00 37.39 3.01
258 259 2.528673 ACGGAGAGCTAGGGTTAGTT 57.471 50.000 0.00 0.00 0.00 2.24
259 260 2.377073 GAACGGAGAGCTAGGGTTAGT 58.623 52.381 0.00 0.00 0.00 2.24
260 261 1.682323 GGAACGGAGAGCTAGGGTTAG 59.318 57.143 0.00 0.00 0.00 2.34
261 262 1.687368 GGGAACGGAGAGCTAGGGTTA 60.687 57.143 0.00 0.00 0.00 2.85
262 263 0.976590 GGGAACGGAGAGCTAGGGTT 60.977 60.000 0.00 0.00 0.00 4.11
263 264 1.381463 GGGAACGGAGAGCTAGGGT 60.381 63.158 0.00 0.00 0.00 4.34
264 265 0.185416 TAGGGAACGGAGAGCTAGGG 59.815 60.000 0.00 0.00 0.00 3.53
265 266 1.320507 GTAGGGAACGGAGAGCTAGG 58.679 60.000 0.00 0.00 0.00 3.02
266 267 1.950909 CTGTAGGGAACGGAGAGCTAG 59.049 57.143 0.00 0.00 36.47 3.42
267 268 1.409802 CCTGTAGGGAACGGAGAGCTA 60.410 57.143 0.00 0.00 36.47 3.32
268 269 0.684805 CCTGTAGGGAACGGAGAGCT 60.685 60.000 0.00 0.00 36.47 4.09
269 270 1.817209 CCTGTAGGGAACGGAGAGC 59.183 63.158 0.00 0.00 36.47 4.09
280 281 1.348064 TGTGTTCACCTCCCTGTAGG 58.652 55.000 0.37 0.00 42.82 3.18
281 282 2.289694 CCTTGTGTTCACCTCCCTGTAG 60.290 54.545 0.37 0.00 0.00 2.74
282 283 1.697432 CCTTGTGTTCACCTCCCTGTA 59.303 52.381 0.37 0.00 0.00 2.74
283 284 0.474184 CCTTGTGTTCACCTCCCTGT 59.526 55.000 0.37 0.00 0.00 4.00
284 285 0.890996 GCCTTGTGTTCACCTCCCTG 60.891 60.000 0.37 0.00 0.00 4.45
285 286 1.062488 AGCCTTGTGTTCACCTCCCT 61.062 55.000 0.37 0.00 0.00 4.20
286 287 0.890996 CAGCCTTGTGTTCACCTCCC 60.891 60.000 0.37 0.00 0.00 4.30
287 288 0.890996 CCAGCCTTGTGTTCACCTCC 60.891 60.000 0.37 0.00 0.00 4.30
288 289 0.890996 CCCAGCCTTGTGTTCACCTC 60.891 60.000 0.37 0.00 0.00 3.85
289 290 1.151450 CCCAGCCTTGTGTTCACCT 59.849 57.895 0.37 0.00 0.00 4.00
290 291 0.467290 TTCCCAGCCTTGTGTTCACC 60.467 55.000 0.37 0.00 0.00 4.02
291 292 0.954452 CTTCCCAGCCTTGTGTTCAC 59.046 55.000 0.00 0.00 0.00 3.18
292 293 0.550914 ACTTCCCAGCCTTGTGTTCA 59.449 50.000 0.00 0.00 0.00 3.18
293 294 0.954452 CACTTCCCAGCCTTGTGTTC 59.046 55.000 0.00 0.00 0.00 3.18
294 295 0.550914 TCACTTCCCAGCCTTGTGTT 59.449 50.000 0.00 0.00 0.00 3.32
295 296 0.773644 ATCACTTCCCAGCCTTGTGT 59.226 50.000 0.00 0.00 0.00 3.72
296 297 2.026822 AGTATCACTTCCCAGCCTTGTG 60.027 50.000 0.00 0.00 0.00 3.33
297 298 2.269940 AGTATCACTTCCCAGCCTTGT 58.730 47.619 0.00 0.00 0.00 3.16
298 299 4.162320 TCTTAGTATCACTTCCCAGCCTTG 59.838 45.833 0.00 0.00 0.00 3.61
299 300 4.362677 TCTTAGTATCACTTCCCAGCCTT 58.637 43.478 0.00 0.00 0.00 4.35
300 301 3.995636 TCTTAGTATCACTTCCCAGCCT 58.004 45.455 0.00 0.00 0.00 4.58
301 302 4.345257 TGATCTTAGTATCACTTCCCAGCC 59.655 45.833 0.00 0.00 30.92 4.85
302 303 5.537300 TGATCTTAGTATCACTTCCCAGC 57.463 43.478 0.00 0.00 30.92 4.85
311 312 3.905968 TCACGGGGTGATCTTAGTATCA 58.094 45.455 0.00 0.00 37.67 2.15
328 329 4.664677 GGATCCGGGCCGATCACG 62.665 72.222 30.79 10.59 40.45 4.35
337 338 3.616721 CTGTAGGGCGGATCCGGG 61.617 72.222 33.98 9.39 40.19 5.73
338 339 3.616721 CCTGTAGGGCGGATCCGG 61.617 72.222 33.98 16.02 40.19 5.14
339 340 2.520982 TCCTGTAGGGCGGATCCG 60.521 66.667 30.03 30.03 43.09 4.18
340 341 1.152525 TCTCCTGTAGGGCGGATCC 60.153 63.158 0.00 0.00 35.41 3.36
341 342 0.178987 TCTCTCCTGTAGGGCGGATC 60.179 60.000 0.00 0.00 35.41 3.36
342 343 0.485099 ATCTCTCCTGTAGGGCGGAT 59.515 55.000 0.00 0.00 35.41 4.18
343 344 0.178987 GATCTCTCCTGTAGGGCGGA 60.179 60.000 0.00 0.00 35.41 5.54
344 345 1.519751 CGATCTCTCCTGTAGGGCGG 61.520 65.000 0.00 0.00 35.41 6.13
345 346 1.519751 CCGATCTCTCCTGTAGGGCG 61.520 65.000 0.00 0.00 35.41 6.13
346 347 0.178987 TCCGATCTCTCCTGTAGGGC 60.179 60.000 0.00 0.00 35.41 5.19
347 348 2.166829 CATCCGATCTCTCCTGTAGGG 58.833 57.143 0.00 0.00 35.41 3.53
348 349 3.081061 CTCATCCGATCTCTCCTGTAGG 58.919 54.545 0.00 0.00 0.00 3.18
349 350 3.081061 CCTCATCCGATCTCTCCTGTAG 58.919 54.545 0.00 0.00 0.00 2.74
350 351 2.224892 CCCTCATCCGATCTCTCCTGTA 60.225 54.545 0.00 0.00 0.00 2.74
351 352 1.480312 CCCTCATCCGATCTCTCCTGT 60.480 57.143 0.00 0.00 0.00 4.00
352 353 1.202989 TCCCTCATCCGATCTCTCCTG 60.203 57.143 0.00 0.00 0.00 3.86
353 354 1.153539 TCCCTCATCCGATCTCTCCT 58.846 55.000 0.00 0.00 0.00 3.69
354 355 1.892474 CTTCCCTCATCCGATCTCTCC 59.108 57.143 0.00 0.00 0.00 3.71
355 356 1.892474 CCTTCCCTCATCCGATCTCTC 59.108 57.143 0.00 0.00 0.00 3.20
356 357 1.219213 ACCTTCCCTCATCCGATCTCT 59.781 52.381 0.00 0.00 0.00 3.10
357 358 1.342819 CACCTTCCCTCATCCGATCTC 59.657 57.143 0.00 0.00 0.00 2.75
358 359 1.062886 TCACCTTCCCTCATCCGATCT 60.063 52.381 0.00 0.00 0.00 2.75
359 360 1.414158 TCACCTTCCCTCATCCGATC 58.586 55.000 0.00 0.00 0.00 3.69
360 361 1.879575 TTCACCTTCCCTCATCCGAT 58.120 50.000 0.00 0.00 0.00 4.18
361 362 1.879575 ATTCACCTTCCCTCATCCGA 58.120 50.000 0.00 0.00 0.00 4.55
362 363 2.700897 AGTATTCACCTTCCCTCATCCG 59.299 50.000 0.00 0.00 0.00 4.18
363 364 3.711704 TGAGTATTCACCTTCCCTCATCC 59.288 47.826 0.00 0.00 0.00 3.51
364 365 5.119694 GTTGAGTATTCACCTTCCCTCATC 58.880 45.833 0.00 0.00 31.71 2.92
365 366 4.383118 CGTTGAGTATTCACCTTCCCTCAT 60.383 45.833 0.00 0.00 31.71 2.90
366 367 3.056107 CGTTGAGTATTCACCTTCCCTCA 60.056 47.826 0.00 0.00 31.71 3.86
367 368 3.522553 CGTTGAGTATTCACCTTCCCTC 58.477 50.000 0.00 0.00 31.71 4.30
368 369 2.236395 CCGTTGAGTATTCACCTTCCCT 59.764 50.000 0.00 0.00 31.71 4.20
369 370 2.629051 CCGTTGAGTATTCACCTTCCC 58.371 52.381 0.00 0.00 31.71 3.97
370 371 2.007608 GCCGTTGAGTATTCACCTTCC 58.992 52.381 0.00 0.00 31.71 3.46
371 372 2.673368 CTGCCGTTGAGTATTCACCTTC 59.327 50.000 0.00 0.00 31.71 3.46
372 373 2.699954 CTGCCGTTGAGTATTCACCTT 58.300 47.619 0.00 0.00 31.71 3.50
373 374 1.676014 GCTGCCGTTGAGTATTCACCT 60.676 52.381 0.00 0.00 31.71 4.00
374 375 0.727398 GCTGCCGTTGAGTATTCACC 59.273 55.000 0.00 0.00 31.71 4.02
375 376 1.438651 TGCTGCCGTTGAGTATTCAC 58.561 50.000 0.00 0.00 31.71 3.18
376 377 2.009051 CATGCTGCCGTTGAGTATTCA 58.991 47.619 0.00 0.00 0.00 2.57
377 378 2.279741 TCATGCTGCCGTTGAGTATTC 58.720 47.619 0.00 0.00 0.00 1.75
378 379 2.093500 TCTCATGCTGCCGTTGAGTATT 60.093 45.455 18.00 0.00 38.39 1.89
379 380 1.482182 TCTCATGCTGCCGTTGAGTAT 59.518 47.619 18.00 0.00 38.39 2.12
380 381 0.894835 TCTCATGCTGCCGTTGAGTA 59.105 50.000 18.00 7.70 38.39 2.59
381 382 0.251354 ATCTCATGCTGCCGTTGAGT 59.749 50.000 18.00 8.08 38.39 3.41
382 383 0.935898 GATCTCATGCTGCCGTTGAG 59.064 55.000 14.54 14.54 38.56 3.02
383 384 0.807275 CGATCTCATGCTGCCGTTGA 60.807 55.000 0.00 0.00 0.00 3.18
384 385 1.640069 CGATCTCATGCTGCCGTTG 59.360 57.895 0.00 0.00 0.00 4.10
385 386 2.176273 GCGATCTCATGCTGCCGTT 61.176 57.895 0.00 0.00 0.00 4.44
386 387 2.587194 GCGATCTCATGCTGCCGT 60.587 61.111 0.00 0.00 0.00 5.68
387 388 3.344215 GGCGATCTCATGCTGCCG 61.344 66.667 0.00 0.00 35.77 5.69
388 389 2.203112 TGGCGATCTCATGCTGCC 60.203 61.111 0.00 6.56 45.91 4.85
389 390 2.541120 GGTGGCGATCTCATGCTGC 61.541 63.158 0.00 0.00 0.00 5.25
390 391 2.242572 CGGTGGCGATCTCATGCTG 61.243 63.158 0.00 0.00 0.00 4.41
391 392 2.107750 CGGTGGCGATCTCATGCT 59.892 61.111 0.00 0.00 0.00 3.79
392 393 2.969238 CCGGTGGCGATCTCATGC 60.969 66.667 0.00 0.00 0.00 4.06
393 394 2.280389 CCCGGTGGCGATCTCATG 60.280 66.667 0.00 0.00 0.00 3.07
394 395 2.443952 TCCCGGTGGCGATCTCAT 60.444 61.111 0.00 0.00 0.00 2.90
395 396 3.147595 CTCCCGGTGGCGATCTCA 61.148 66.667 0.00 0.00 0.00 3.27
396 397 2.356818 CTTCTCCCGGTGGCGATCTC 62.357 65.000 0.00 0.00 0.00 2.75
397 398 2.363795 TTCTCCCGGTGGCGATCT 60.364 61.111 0.00 0.00 0.00 2.75
398 399 1.956629 TTCTTCTCCCGGTGGCGATC 61.957 60.000 0.00 0.00 0.00 3.69
399 400 1.550130 TTTCTTCTCCCGGTGGCGAT 61.550 55.000 0.00 0.00 0.00 4.58
400 401 1.760479 TTTTCTTCTCCCGGTGGCGA 61.760 55.000 0.00 0.00 0.00 5.54
401 402 1.302192 TTTTCTTCTCCCGGTGGCG 60.302 57.895 0.00 0.00 0.00 5.69
402 403 1.241990 GGTTTTCTTCTCCCGGTGGC 61.242 60.000 0.00 0.00 0.00 5.01
403 404 0.608308 GGGTTTTCTTCTCCCGGTGG 60.608 60.000 0.00 0.00 0.00 4.61
404 405 0.400594 AGGGTTTTCTTCTCCCGGTG 59.599 55.000 0.00 0.00 45.27 4.94
405 406 0.400594 CAGGGTTTTCTTCTCCCGGT 59.599 55.000 0.00 0.00 45.27 5.28
406 407 0.322546 CCAGGGTTTTCTTCTCCCGG 60.323 60.000 0.00 0.00 45.27 5.73
407 408 0.960861 GCCAGGGTTTTCTTCTCCCG 60.961 60.000 0.00 0.00 45.27 5.14
408 409 0.405973 AGCCAGGGTTTTCTTCTCCC 59.594 55.000 0.00 0.00 41.36 4.30
409 410 2.356227 CCTAGCCAGGGTTTTCTTCTCC 60.356 54.545 0.00 0.00 38.41 3.71
410 411 2.992593 CCTAGCCAGGGTTTTCTTCTC 58.007 52.381 0.00 0.00 38.41 2.87
421 422 2.761208 CGTATCTTATCCCCTAGCCAGG 59.239 54.545 0.00 0.00 42.22 4.45
422 423 3.193691 CACGTATCTTATCCCCTAGCCAG 59.806 52.174 0.00 0.00 0.00 4.85
423 424 3.162666 CACGTATCTTATCCCCTAGCCA 58.837 50.000 0.00 0.00 0.00 4.75
424 425 3.163467 ACACGTATCTTATCCCCTAGCC 58.837 50.000 0.00 0.00 0.00 3.93
425 426 4.142730 CGTACACGTATCTTATCCCCTAGC 60.143 50.000 0.00 0.00 34.11 3.42
426 427 4.142730 GCGTACACGTATCTTATCCCCTAG 60.143 50.000 3.44 0.00 42.22 3.02
427 428 3.753272 GCGTACACGTATCTTATCCCCTA 59.247 47.826 3.44 0.00 42.22 3.53
428 429 2.555757 GCGTACACGTATCTTATCCCCT 59.444 50.000 3.44 0.00 42.22 4.79
429 430 2.294233 TGCGTACACGTATCTTATCCCC 59.706 50.000 3.44 0.00 42.22 4.81
430 431 3.631145 TGCGTACACGTATCTTATCCC 57.369 47.619 3.44 0.00 42.22 3.85
431 432 7.539710 TCAAATATGCGTACACGTATCTTATCC 59.460 37.037 8.62 0.00 43.30 2.59
432 433 8.443898 TCAAATATGCGTACACGTATCTTATC 57.556 34.615 8.62 0.00 43.30 1.75
433 434 7.541091 CCTCAAATATGCGTACACGTATCTTAT 59.459 37.037 8.62 0.00 43.30 1.73
434 435 6.859508 CCTCAAATATGCGTACACGTATCTTA 59.140 38.462 8.62 0.00 43.30 2.10
435 436 5.690409 CCTCAAATATGCGTACACGTATCTT 59.310 40.000 8.62 3.45 43.30 2.40
436 437 5.220381 CCTCAAATATGCGTACACGTATCT 58.780 41.667 8.62 0.00 43.30 1.98
437 438 4.143389 GCCTCAAATATGCGTACACGTATC 60.143 45.833 8.62 0.00 43.30 2.24
438 439 3.739300 GCCTCAAATATGCGTACACGTAT 59.261 43.478 10.14 10.14 45.96 3.06
439 440 3.117794 GCCTCAAATATGCGTACACGTA 58.882 45.455 3.44 0.00 42.22 3.57
440 441 1.931172 GCCTCAAATATGCGTACACGT 59.069 47.619 3.44 0.00 42.22 4.49
441 442 2.201732 AGCCTCAAATATGCGTACACG 58.798 47.619 0.00 0.00 43.27 4.49
442 443 4.809426 ACTTAGCCTCAAATATGCGTACAC 59.191 41.667 0.00 0.00 0.00 2.90
443 444 4.808895 CACTTAGCCTCAAATATGCGTACA 59.191 41.667 0.00 0.00 0.00 2.90
444 445 4.211374 CCACTTAGCCTCAAATATGCGTAC 59.789 45.833 0.00 0.00 0.00 3.67
445 446 4.100344 TCCACTTAGCCTCAAATATGCGTA 59.900 41.667 0.00 0.00 0.00 4.42
446 447 3.118408 TCCACTTAGCCTCAAATATGCGT 60.118 43.478 0.00 0.00 0.00 5.24
447 448 3.248602 GTCCACTTAGCCTCAAATATGCG 59.751 47.826 0.00 0.00 0.00 4.73
448 449 4.455606 AGTCCACTTAGCCTCAAATATGC 58.544 43.478 0.00 0.00 0.00 3.14
449 450 6.821388 AGTAGTCCACTTAGCCTCAAATATG 58.179 40.000 0.00 0.00 31.59 1.78
450 451 6.239064 CGAGTAGTCCACTTAGCCTCAAATAT 60.239 42.308 0.00 0.00 37.72 1.28
451 452 5.067413 CGAGTAGTCCACTTAGCCTCAAATA 59.933 44.000 0.00 0.00 37.72 1.40
452 453 4.142138 CGAGTAGTCCACTTAGCCTCAAAT 60.142 45.833 0.00 0.00 37.72 2.32
453 454 3.192844 CGAGTAGTCCACTTAGCCTCAAA 59.807 47.826 0.00 0.00 37.72 2.69
454 455 2.753452 CGAGTAGTCCACTTAGCCTCAA 59.247 50.000 0.00 0.00 37.72 3.02
455 456 2.026542 TCGAGTAGTCCACTTAGCCTCA 60.027 50.000 0.00 0.00 37.72 3.86
456 457 2.641305 TCGAGTAGTCCACTTAGCCTC 58.359 52.381 0.00 0.00 37.72 4.70
457 458 2.803030 TCGAGTAGTCCACTTAGCCT 57.197 50.000 0.00 0.00 37.72 4.58
458 459 4.113354 CAAATCGAGTAGTCCACTTAGCC 58.887 47.826 0.00 0.00 37.72 3.93
459 460 4.995124 TCAAATCGAGTAGTCCACTTAGC 58.005 43.478 0.00 0.00 37.72 3.09
460 461 7.759886 TCATTTCAAATCGAGTAGTCCACTTAG 59.240 37.037 0.00 0.00 37.72 2.18
461 462 7.544566 GTCATTTCAAATCGAGTAGTCCACTTA 59.455 37.037 0.00 0.00 37.72 2.24
462 463 6.369065 GTCATTTCAAATCGAGTAGTCCACTT 59.631 38.462 0.00 0.00 37.72 3.16
463 464 5.869888 GTCATTTCAAATCGAGTAGTCCACT 59.130 40.000 0.00 0.00 41.47 4.00
464 465 5.637810 TGTCATTTCAAATCGAGTAGTCCAC 59.362 40.000 0.00 0.00 0.00 4.02
465 466 5.789521 TGTCATTTCAAATCGAGTAGTCCA 58.210 37.500 0.00 0.00 0.00 4.02
466 467 6.535150 TCATGTCATTTCAAATCGAGTAGTCC 59.465 38.462 0.00 0.00 0.00 3.85
471 472 5.882000 TGGATCATGTCATTTCAAATCGAGT 59.118 36.000 0.00 0.00 0.00 4.18
596 599 0.689745 ATTACAGCGGTCCTAGGCCA 60.690 55.000 18.65 2.66 0.00 5.36
672 680 8.610035 GTTTAAAATAGAAGGACGGGATGTTAG 58.390 37.037 0.00 0.00 0.00 2.34
673 681 7.278424 CGTTTAAAATAGAAGGACGGGATGTTA 59.722 37.037 0.00 0.00 0.00 2.41
676 684 5.813672 TCGTTTAAAATAGAAGGACGGGATG 59.186 40.000 0.00 0.00 0.00 3.51
690 698 5.350640 CGGAAGCCTAGAACTCGTTTAAAAT 59.649 40.000 0.00 0.00 0.00 1.82
822 1092 3.434984 GCAAAACTAACCTGAGCTGAGAG 59.565 47.826 0.01 0.00 0.00 3.20
911 1181 1.207377 GAACTCGAGGGCGCGAATAC 61.207 60.000 18.41 0.00 40.13 1.89
1076 1354 1.529865 GCACCGACCAAACTACAGAAC 59.470 52.381 0.00 0.00 0.00 3.01
1129 1407 0.040692 GAACAAAGAAACCGCCGGAC 60.041 55.000 11.71 0.23 0.00 4.79
1388 1677 3.369471 GGTGCATTAACTCTGGAGTGCTA 60.369 47.826 3.88 0.00 41.58 3.49
1518 1810 7.817418 AAGACTATAAGCCTCTCAAGAGTAG 57.183 40.000 6.30 3.83 40.48 2.57
1520 1812 9.515226 CTATAAGACTATAAGCCTCTCAAGAGT 57.485 37.037 6.30 0.00 40.48 3.24
1521 1813 9.515226 ACTATAAGACTATAAGCCTCTCAAGAG 57.485 37.037 0.00 0.00 41.71 2.85
1522 1814 9.290988 CACTATAAGACTATAAGCCTCTCAAGA 57.709 37.037 0.00 0.00 0.00 3.02
1523 1815 8.519526 CCACTATAAGACTATAAGCCTCTCAAG 58.480 40.741 0.00 0.00 0.00 3.02
1524 1816 8.005388 ACCACTATAAGACTATAAGCCTCTCAA 58.995 37.037 0.00 0.00 0.00 3.02
1525 1817 7.527796 ACCACTATAAGACTATAAGCCTCTCA 58.472 38.462 0.00 0.00 0.00 3.27
1526 1818 7.121611 GGACCACTATAAGACTATAAGCCTCTC 59.878 44.444 0.00 0.00 0.00 3.20
1702 2010 1.901833 GCCACCCTCCATGATTTTGTT 59.098 47.619 0.00 0.00 0.00 2.83
2304 2618 5.085390 CGCACACATCATTCGACAAATTTA 58.915 37.500 0.00 0.00 0.00 1.40
2326 2640 7.637229 AGAATAATTGTGAGATGCAAGAATCG 58.363 34.615 0.00 0.00 0.00 3.34
2374 2688 3.386402 TGTACCTGGGCAAAAGAAAAAGG 59.614 43.478 0.00 0.00 0.00 3.11
2537 2851 1.338864 CCAGAGTCAGTCAGCAATGCT 60.339 52.381 0.00 0.00 40.77 3.79
2825 3143 5.584251 TCAAATTTTGCTCAAAAGTGGAACC 59.416 36.000 9.39 0.00 42.72 3.62
3040 3443 9.892130 AAACCTAAAACCATGTTGACAAATTAA 57.108 25.926 0.00 0.00 0.00 1.40
3505 3908 1.051812 AGTCTCACAGGACCACTTGG 58.948 55.000 0.00 0.00 42.17 3.61
3674 4084 7.993821 AAAGCTAAAGAAACTTTCTGCTTTC 57.006 32.000 22.64 6.97 45.53 2.62
3763 4173 6.712547 AGTTCTCTGCAGCAGTAAAGTTTATT 59.287 34.615 22.10 0.00 32.61 1.40
3781 4191 3.541632 TCAAAACGGAAAGCAGTTCTCT 58.458 40.909 0.81 0.00 36.40 3.10
3928 4338 3.975670 GTCTAGTTCACAGTGACTCAACG 59.024 47.826 1.52 0.00 0.00 4.10
4557 4969 0.253020 ACATACCCGGGAAGGTTCCT 60.253 55.000 32.02 3.84 46.72 3.36
4648 5060 3.118149 TGACAGATGTTGGAGATCATGGG 60.118 47.826 0.00 0.00 0.00 4.00
4652 5064 4.831674 ATGTGACAGATGTTGGAGATCA 57.168 40.909 0.00 0.00 0.00 2.92
4708 5120 3.670625 CAGGGAGTCGTGGAAAATACAA 58.329 45.455 0.00 0.00 0.00 2.41
4851 5263 3.071479 TCGTGGTTTATCTTCAGGCAAC 58.929 45.455 0.00 0.00 0.00 4.17
4897 5309 3.853671 CGGCTTAACATGAGCAATTTGAC 59.146 43.478 0.00 0.00 41.89 3.18
5953 6422 5.413833 AGAGTGATCAAACAATAGCCAACTG 59.586 40.000 0.00 0.00 0.00 3.16
6293 6762 9.971922 GTTTAGAGGTAACACAAACTACTAAGA 57.028 33.333 0.00 0.00 41.41 2.10
6294 6763 9.754382 TGTTTAGAGGTAACACAAACTACTAAG 57.246 33.333 0.00 0.00 41.41 2.18
6353 6826 1.077357 AACCCACTTTGGCACGTCA 60.077 52.632 0.00 0.00 35.79 4.35
6389 6862 3.463505 GATATGTCGATGCCGGCG 58.536 61.111 23.90 7.87 44.62 6.46
6482 6955 4.864334 CAGGGGCATCTGGTCGGC 62.864 72.222 0.00 0.00 0.00 5.54
6485 6958 2.187946 CGTCAGGGGCATCTGGTC 59.812 66.667 7.14 1.90 35.58 4.02
6490 6963 4.467084 TTCGGCGTCAGGGGCATC 62.467 66.667 6.85 0.00 0.00 3.91
6512 6985 4.353489 TGGTATCCATAATGAATGCTCCCA 59.647 41.667 0.00 0.00 33.92 4.37
6516 6989 4.202461 ACCGTGGTATCCATAATGAATGCT 60.202 41.667 0.00 0.00 35.28 3.79
6527 7000 1.409790 CAATCCGTACCGTGGTATCCA 59.590 52.381 1.43 0.00 32.82 3.41
6538 7011 3.305199 CCTTCCCTATCGTCAATCCGTAC 60.305 52.174 0.00 0.00 0.00 3.67
6542 7015 2.047830 ACCCTTCCCTATCGTCAATCC 58.952 52.381 0.00 0.00 0.00 3.01
6544 7017 2.844348 ACAACCCTTCCCTATCGTCAAT 59.156 45.455 0.00 0.00 0.00 2.57
6642 7120 1.066286 GCTGAAGCAGTGGATGAGAGT 60.066 52.381 0.00 0.00 41.59 3.24
6737 7400 3.395639 ACAGCTTGCAAACAATCAATGG 58.604 40.909 0.00 0.00 34.61 3.16
6838 7503 3.670055 GTGAAACAAAATGACCTGCATCG 59.330 43.478 0.00 0.00 33.99 3.84
6841 7506 3.698539 TCAGTGAAACAAAATGACCTGCA 59.301 39.130 0.00 0.00 41.43 4.41
6924 7589 3.554934 TCAAGCCAACAAAGAGTGTGAT 58.445 40.909 0.00 0.00 40.60 3.06
6986 7651 2.033141 CTGCCAGTGGACCACCTG 59.967 66.667 21.32 16.95 34.49 4.00
6987 7652 3.252284 CCTGCCAGTGGACCACCT 61.252 66.667 21.32 5.90 34.49 4.00
7108 7773 1.874019 CGTCTGCCGTTCGATGAGG 60.874 63.158 0.00 0.00 0.00 3.86
7141 7806 1.447838 CACGTGGCGCCAGTAGATT 60.448 57.895 33.73 7.53 0.00 2.40
7168 7833 1.595929 GGGAAGCGACGGTCAACAA 60.596 57.895 9.10 0.00 0.00 2.83
7171 7836 3.562779 GACGGGAAGCGACGGTCAA 62.563 63.158 9.10 0.00 37.88 3.18
7174 7839 2.647680 TTTTGACGGGAAGCGACGGT 62.648 55.000 0.00 0.00 0.00 4.83
7320 8200 1.942223 GTGTCGCCCACGTTTTTGC 60.942 57.895 0.00 0.00 41.18 3.68
7381 8263 3.434319 GTGGTCATGTGCTGGGCG 61.434 66.667 0.00 0.00 0.00 6.13
7392 8274 3.704100 CCACTGACATGTGTGGTCA 57.296 52.632 21.68 5.73 46.18 4.02
7397 8279 2.727123 TTTCACCCACTGACATGTGT 57.273 45.000 1.15 0.00 36.30 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.