Multiple sequence alignment - TraesCS5D01G254000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G254000 chr5D 100.000 2746 0 0 1 2746 360748918 360751663 0.000000e+00 5072.0
1 TraesCS5D01G254000 chr5D 89.501 762 75 5 1988 2746 64215812 64216571 0.000000e+00 959.0
2 TraesCS5D01G254000 chr5B 88.529 1081 55 28 859 1900 426086506 426087556 0.000000e+00 1245.0
3 TraesCS5D01G254000 chr5B 91.712 555 29 8 1 542 426066780 426067330 0.000000e+00 754.0
4 TraesCS5D01G254000 chr5B 91.176 68 2 3 800 866 426071524 426071588 3.770000e-14 89.8
5 TraesCS5D01G254000 chr5A 92.488 852 34 16 1155 1979 461522511 461523359 0.000000e+00 1192.0
6 TraesCS5D01G254000 chr5A 88.732 852 51 25 224 1063 461520482 461521300 0.000000e+00 1000.0
7 TraesCS5D01G254000 chr5A 93.013 229 13 2 1 227 461520163 461520390 5.670000e-87 331.0
8 TraesCS5D01G254000 chr6D 90.250 759 71 3 1988 2746 140103636 140104391 0.000000e+00 989.0
9 TraesCS5D01G254000 chr6D 88.816 760 82 3 1988 2746 336530952 336530195 0.000000e+00 929.0
10 TraesCS5D01G254000 chr3D 89.633 762 74 4 1988 2746 534157429 534158188 0.000000e+00 965.0
11 TraesCS5D01G254000 chr3D 88.568 761 83 4 1987 2746 141664896 141664139 0.000000e+00 920.0
12 TraesCS5D01G254000 chr1D 89.550 756 70 6 1988 2738 353562457 353561706 0.000000e+00 950.0
13 TraesCS5D01G254000 chr7A 89.171 748 80 1 1988 2735 730728590 730729336 0.000000e+00 931.0
14 TraesCS5D01G254000 chr1A 88.699 761 81 5 1988 2746 548290019 548289262 0.000000e+00 924.0
15 TraesCS5D01G254000 chr2A 88.684 760 81 5 1988 2746 205486462 205485707 0.000000e+00 922.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G254000 chr5D 360748918 360751663 2745 False 5072 5072 100.000 1 2746 1 chr5D.!!$F2 2745
1 TraesCS5D01G254000 chr5D 64215812 64216571 759 False 959 959 89.501 1988 2746 1 chr5D.!!$F1 758
2 TraesCS5D01G254000 chr5B 426086506 426087556 1050 False 1245 1245 88.529 859 1900 1 chr5B.!!$F3 1041
3 TraesCS5D01G254000 chr5B 426066780 426067330 550 False 754 754 91.712 1 542 1 chr5B.!!$F1 541
4 TraesCS5D01G254000 chr5A 461520163 461523359 3196 False 841 1192 91.411 1 1979 3 chr5A.!!$F1 1978
5 TraesCS5D01G254000 chr6D 140103636 140104391 755 False 989 989 90.250 1988 2746 1 chr6D.!!$F1 758
6 TraesCS5D01G254000 chr6D 336530195 336530952 757 True 929 929 88.816 1988 2746 1 chr6D.!!$R1 758
7 TraesCS5D01G254000 chr3D 534157429 534158188 759 False 965 965 89.633 1988 2746 1 chr3D.!!$F1 758
8 TraesCS5D01G254000 chr3D 141664139 141664896 757 True 920 920 88.568 1987 2746 1 chr3D.!!$R1 759
9 TraesCS5D01G254000 chr1D 353561706 353562457 751 True 950 950 89.550 1988 2738 1 chr1D.!!$R1 750
10 TraesCS5D01G254000 chr7A 730728590 730729336 746 False 931 931 89.171 1988 2735 1 chr7A.!!$F1 747
11 TraesCS5D01G254000 chr1A 548289262 548290019 757 True 924 924 88.699 1988 2746 1 chr1A.!!$R1 758
12 TraesCS5D01G254000 chr2A 205485707 205486462 755 True 922 922 88.684 1988 2746 1 chr2A.!!$R1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 770 0.393537 CAGAGCTCGCCCCAATCTTT 60.394 55.0 8.37 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 3286 1.134788 AGTCTGTGTGTTATAGGGCGC 60.135 52.381 0.0 0.0 0.0 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.664428 CTTCCCCTTGTTTTCCATTTAAGA 57.336 37.500 0.00 0.00 0.00 2.10
39 40 8.156165 TCCATTTAAGAGCAATTTTTGAACCAT 58.844 29.630 0.00 0.00 0.00 3.55
47 48 6.527423 AGCAATTTTTGAACCATCAGATTGT 58.473 32.000 0.00 0.00 36.10 2.71
61 62 7.335422 ACCATCAGATTGTTTGTTCATCTCTAC 59.665 37.037 0.00 0.00 0.00 2.59
83 86 6.170675 ACGTATGAAACTGAAGAAAGCATC 57.829 37.500 0.00 0.00 0.00 3.91
87 90 7.848051 CGTATGAAACTGAAGAAAGCATCATAC 59.152 37.037 10.87 10.87 40.85 2.39
229 327 6.486253 TTTTATGCTTCTTGCTCAGTAGTG 57.514 37.500 0.00 0.00 43.37 2.74
360 458 2.726066 GCACTTGCTCGTGACAATAAGC 60.726 50.000 9.63 0.00 37.06 3.09
370 468 1.804151 TGACAATAAGCGGTGCACTTC 59.196 47.619 17.98 8.75 0.00 3.01
532 642 2.682856 TGAAAGTGGTCACTGTTTCTGC 59.317 45.455 4.22 0.00 41.58 4.26
562 672 2.954318 GCATCTGGTATGCTCCATTGTT 59.046 45.455 2.78 0.00 41.52 2.83
588 698 3.947910 AAATCATGTTTGGAGTGCTGG 57.052 42.857 0.00 0.00 0.00 4.85
596 706 3.006247 GTTTGGAGTGCTGGAGAAGATC 58.994 50.000 0.00 0.00 0.00 2.75
645 756 3.312421 TGTCTTGTGTAAAGTTGCAGAGC 59.688 43.478 0.00 0.00 0.00 4.09
656 767 2.899339 GCAGAGCTCGCCCCAATC 60.899 66.667 16.50 0.00 0.00 2.67
659 770 0.393537 CAGAGCTCGCCCCAATCTTT 60.394 55.000 8.37 0.00 0.00 2.52
666 777 0.670239 CGCCCCAATCTTTGTTTGCC 60.670 55.000 0.00 0.00 0.00 4.52
687 798 4.394920 GCCGAATTAACCATTTGACTCTGA 59.605 41.667 0.00 0.00 0.00 3.27
690 801 6.183360 CCGAATTAACCATTTGACTCTGACTC 60.183 42.308 0.00 0.00 0.00 3.36
699 810 2.201732 TGACTCTGACTCGTGCAAAAC 58.798 47.619 0.00 0.00 0.00 2.43
722 833 3.066900 CGTTTTGGTACACACATTTCCCA 59.933 43.478 0.00 0.00 39.29 4.37
724 835 5.420409 GTTTTGGTACACACATTTCCCAAA 58.580 37.500 0.00 0.00 39.29 3.28
739 850 8.090214 ACATTTCCCAAACTATTTGTGAAGATG 58.910 33.333 13.37 13.37 38.07 2.90
747 858 7.539712 AACTATTTGTGAAGATGACGTATGG 57.460 36.000 0.00 0.00 0.00 2.74
748 859 6.640518 ACTATTTGTGAAGATGACGTATGGT 58.359 36.000 0.00 0.00 0.00 3.55
749 860 7.778083 ACTATTTGTGAAGATGACGTATGGTA 58.222 34.615 0.00 0.00 0.00 3.25
750 861 7.921214 ACTATTTGTGAAGATGACGTATGGTAG 59.079 37.037 0.00 0.00 0.00 3.18
751 862 5.907866 TTGTGAAGATGACGTATGGTAGA 57.092 39.130 0.00 0.00 0.00 2.59
752 863 6.465439 TTGTGAAGATGACGTATGGTAGAT 57.535 37.500 0.00 0.00 0.00 1.98
753 864 6.073327 TGTGAAGATGACGTATGGTAGATC 57.927 41.667 0.00 0.00 0.00 2.75
754 865 5.828328 TGTGAAGATGACGTATGGTAGATCT 59.172 40.000 0.00 0.00 32.06 2.75
755 866 6.996282 TGTGAAGATGACGTATGGTAGATCTA 59.004 38.462 0.00 0.00 31.06 1.98
756 867 7.665974 TGTGAAGATGACGTATGGTAGATCTAT 59.334 37.037 5.57 0.00 31.06 1.98
757 868 7.965655 GTGAAGATGACGTATGGTAGATCTATG 59.034 40.741 5.57 0.00 31.06 2.23
762 873 7.436430 TGACGTATGGTAGATCTATGACTTC 57.564 40.000 5.57 5.94 0.00 3.01
764 875 5.711036 ACGTATGGTAGATCTATGACTTCCC 59.289 44.000 5.57 1.09 0.00 3.97
768 879 6.275692 TGGTAGATCTATGACTTCCCTGTA 57.724 41.667 5.57 0.00 0.00 2.74
775 886 6.681729 TCTATGACTTCCCTGTAACAACTT 57.318 37.500 0.00 0.00 0.00 2.66
776 887 6.464222 TCTATGACTTCCCTGTAACAACTTG 58.536 40.000 0.00 0.00 0.00 3.16
777 888 3.815809 TGACTTCCCTGTAACAACTTGG 58.184 45.455 0.00 0.00 0.00 3.61
778 889 3.456644 TGACTTCCCTGTAACAACTTGGA 59.543 43.478 0.00 0.00 0.00 3.53
779 890 4.065789 GACTTCCCTGTAACAACTTGGAG 58.934 47.826 0.00 0.00 0.00 3.86
781 892 4.351111 ACTTCCCTGTAACAACTTGGAGAT 59.649 41.667 0.00 0.00 0.00 2.75
784 895 6.636454 TCCCTGTAACAACTTGGAGATAAT 57.364 37.500 0.00 0.00 0.00 1.28
785 896 7.743116 TCCCTGTAACAACTTGGAGATAATA 57.257 36.000 0.00 0.00 0.00 0.98
787 898 8.778059 TCCCTGTAACAACTTGGAGATAATAAT 58.222 33.333 0.00 0.00 0.00 1.28
788 899 8.840321 CCCTGTAACAACTTGGAGATAATAATG 58.160 37.037 0.00 0.00 0.00 1.90
827 938 4.371624 AACACTCTGATCCACCATTTCA 57.628 40.909 0.00 0.00 0.00 2.69
828 939 3.947868 ACACTCTGATCCACCATTTCAG 58.052 45.455 0.00 0.00 38.56 3.02
829 940 3.328931 ACACTCTGATCCACCATTTCAGT 59.671 43.478 0.00 0.00 38.39 3.41
830 941 3.937706 CACTCTGATCCACCATTTCAGTC 59.062 47.826 0.00 0.00 38.39 3.51
832 943 2.912295 TCTGATCCACCATTTCAGTCCA 59.088 45.455 0.00 0.00 38.39 4.02
834 945 2.374839 TGATCCACCATTTCAGTCCACA 59.625 45.455 0.00 0.00 0.00 4.17
840 952 1.667724 CCATTTCAGTCCACATCTCGC 59.332 52.381 0.00 0.00 0.00 5.03
844 956 1.478631 TCAGTCCACATCTCGCTGAT 58.521 50.000 0.00 0.00 32.09 2.90
853 965 6.017605 GTCCACATCTCGCTGATTATTTGAAT 60.018 38.462 0.00 0.00 32.05 2.57
854 966 6.543465 TCCACATCTCGCTGATTATTTGAATT 59.457 34.615 0.00 0.00 32.05 2.17
855 967 7.714813 TCCACATCTCGCTGATTATTTGAATTA 59.285 33.333 0.00 0.00 32.05 1.40
856 968 8.344831 CCACATCTCGCTGATTATTTGAATTAA 58.655 33.333 0.00 0.00 32.05 1.40
857 969 9.720667 CACATCTCGCTGATTATTTGAATTAAA 57.279 29.630 0.00 0.00 32.05 1.52
1321 2581 3.353600 TCGCCGACGACAAGGTAA 58.646 55.556 0.00 0.00 45.12 2.85
1351 2611 2.600731 CTCTGTCTGTCCAGTAAAGCG 58.399 52.381 0.00 0.00 34.02 4.68
1379 2664 3.137533 GAGCTCTAATCAATGGCAGGAC 58.862 50.000 6.43 0.00 0.00 3.85
1414 2700 2.796483 TAGTGCAACGCCGCCATCTT 62.796 55.000 0.00 0.00 45.86 2.40
1577 2863 2.202960 TACGCGTATTGGCTGCCC 60.203 61.111 16.41 0.00 0.00 5.36
1822 3111 4.009675 TCCATGATGGATAAATAAGCGGC 58.990 43.478 10.75 0.00 42.67 6.53
1975 3267 7.518731 TTTCCTCGAATGTGAAAACAAAAAG 57.481 32.000 0.00 0.00 0.00 2.27
1979 3271 5.031578 TCGAATGTGAAAACAAAAAGGACG 58.968 37.500 0.00 0.00 0.00 4.79
1980 3272 4.317069 CGAATGTGAAAACAAAAAGGACGC 60.317 41.667 0.00 0.00 0.00 5.19
1981 3273 3.859411 TGTGAAAACAAAAAGGACGCT 57.141 38.095 0.00 0.00 0.00 5.07
1982 3274 3.765026 TGTGAAAACAAAAAGGACGCTC 58.235 40.909 0.00 0.00 0.00 5.03
1983 3275 3.191581 TGTGAAAACAAAAAGGACGCTCA 59.808 39.130 0.00 0.00 0.00 4.26
1984 3276 4.142271 TGTGAAAACAAAAAGGACGCTCAT 60.142 37.500 0.00 0.00 0.00 2.90
1985 3277 5.066634 TGTGAAAACAAAAAGGACGCTCATA 59.933 36.000 0.00 0.00 0.00 2.15
2026 3318 1.878088 ACACAGACTACGTCACGTCAT 59.122 47.619 5.85 0.00 41.54 3.06
2033 3325 0.448593 TACGTCACGTCATCGCATGA 59.551 50.000 5.85 0.00 41.54 3.07
2037 3329 1.926510 GTCACGTCATCGCATGAATGA 59.073 47.619 0.00 1.62 41.69 2.57
2045 3337 5.119743 CGTCATCGCATGAATGAATGTAGAT 59.880 40.000 11.48 0.00 41.69 1.98
2046 3338 6.347160 CGTCATCGCATGAATGAATGTAGATT 60.347 38.462 11.48 0.00 41.69 2.40
2138 3430 2.131972 TCATTAAATCCATCGCGACGG 58.868 47.619 16.57 16.57 0.00 4.79
2146 3438 1.065764 CATCGCGACGGGATCTTCA 59.934 57.895 22.91 0.00 32.93 3.02
2155 3447 4.491676 CGACGGGATCTTCAAAACTAGAA 58.508 43.478 0.00 0.00 0.00 2.10
2253 3547 6.587206 TGAAGTTGCCATGATATGTTTCAA 57.413 33.333 0.00 0.00 0.00 2.69
2419 3716 3.826524 TGGTCAAAGTACTGGAATTGCA 58.173 40.909 0.00 0.00 0.00 4.08
2468 3765 6.781138 TGCTCTATAAACTAAAATTGCCACG 58.219 36.000 0.00 0.00 0.00 4.94
2495 3792 8.418662 TGACAACTTTAGTGTAACACTATGACT 58.581 33.333 0.00 0.00 44.85 3.41
2600 3900 4.617959 TCGTCGAGATGGGTTTAATGATC 58.382 43.478 0.00 0.00 0.00 2.92
2621 3921 8.527567 TGATCAAAACGGATTTTTAATTGGAC 57.472 30.769 0.00 0.00 35.79 4.02
2624 3926 8.582433 TCAAAACGGATTTTTAATTGGACTTC 57.418 30.769 0.00 0.00 35.79 3.01
2681 3984 4.039124 ACCAAAAAGATTTCCGCTGATGTT 59.961 37.500 0.00 0.00 0.00 2.71
2685 3990 5.409643 AAAGATTTCCGCTGATGTTATCG 57.590 39.130 0.00 0.00 0.00 2.92
2713 4018 3.951775 TGTGGCAAAATGAATGGTACC 57.048 42.857 4.43 4.43 0.00 3.34
2717 4022 5.059833 GTGGCAAAATGAATGGTACCAAAA 58.940 37.500 20.76 7.88 0.00 2.44
2735 4040 1.494960 AAGTGTTTGGGCCATGTTGT 58.505 45.000 7.26 0.00 0.00 3.32
2738 4043 2.238395 AGTGTTTGGGCCATGTTGTTTT 59.762 40.909 7.26 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.420222 TCTGATGGTTCAAAAATTGCTCTTAAA 58.580 29.630 0.00 0.00 0.00 1.52
18 19 7.950512 TCTGATGGTTCAAAAATTGCTCTTAA 58.049 30.769 0.00 0.00 0.00 1.85
22 23 6.647895 ACAATCTGATGGTTCAAAAATTGCTC 59.352 34.615 0.00 0.00 0.00 4.26
23 24 6.527423 ACAATCTGATGGTTCAAAAATTGCT 58.473 32.000 0.00 0.00 0.00 3.91
32 33 6.491062 AGATGAACAAACAATCTGATGGTTCA 59.509 34.615 10.72 14.54 33.71 3.18
33 34 6.917533 AGATGAACAAACAATCTGATGGTTC 58.082 36.000 10.72 10.33 0.00 3.62
39 40 6.455647 ACGTAGAGATGAACAAACAATCTGA 58.544 36.000 0.00 0.00 0.00 3.27
47 48 8.085909 TCAGTTTCATACGTAGAGATGAACAAA 58.914 33.333 10.28 0.00 40.77 2.83
61 62 6.169419 TGATGCTTTCTTCAGTTTCATACG 57.831 37.500 0.00 0.00 0.00 3.06
83 86 7.220300 CAGTTTAGCGAACTACTACAAGGTATG 59.780 40.741 7.98 0.00 46.75 2.39
87 90 5.467705 ACAGTTTAGCGAACTACTACAAGG 58.532 41.667 7.98 0.00 46.75 3.61
165 168 5.200483 TGTGTTTCTGGGATCTCAAACTTT 58.800 37.500 10.70 0.00 31.29 2.66
229 327 5.453567 AAACAAGGCTCAAGTATTTGGTC 57.546 39.130 0.00 0.00 34.97 4.02
278 376 2.238646 TGCCACGTTCCTTGATATCCTT 59.761 45.455 0.00 0.00 0.00 3.36
370 468 6.276847 CAACTACAGGGAATCTTAGTAGCAG 58.723 44.000 0.00 0.00 36.51 4.24
428 536 9.405587 GTCGAAAATAAAACCAATCTTCAATCA 57.594 29.630 0.00 0.00 0.00 2.57
429 537 8.575454 CGTCGAAAATAAAACCAATCTTCAATC 58.425 33.333 0.00 0.00 0.00 2.67
532 642 2.569059 CATACCAGATGCTCACCCAAG 58.431 52.381 0.00 0.00 0.00 3.61
558 668 7.920151 CACTCCAAACATGATTTAGTCAAACAA 59.080 33.333 0.00 0.00 40.97 2.83
562 672 5.769662 AGCACTCCAAACATGATTTAGTCAA 59.230 36.000 0.00 0.00 40.97 3.18
612 722 7.562135 ACTTTACACAAGACAGGTAGAAGAAA 58.438 34.615 0.00 0.00 0.00 2.52
613 723 7.120923 ACTTTACACAAGACAGGTAGAAGAA 57.879 36.000 0.00 0.00 0.00 2.52
614 724 6.726490 ACTTTACACAAGACAGGTAGAAGA 57.274 37.500 0.00 0.00 0.00 2.87
645 756 1.669795 GCAAACAAAGATTGGGGCGAG 60.670 52.381 0.00 0.00 34.12 5.03
656 767 6.201806 TCAAATGGTTAATTCGGCAAACAAAG 59.798 34.615 0.00 0.00 0.00 2.77
659 770 4.985409 GTCAAATGGTTAATTCGGCAAACA 59.015 37.500 0.00 0.00 0.00 2.83
666 777 6.454318 CGAGTCAGAGTCAAATGGTTAATTCG 60.454 42.308 6.07 0.00 0.00 3.34
687 798 1.468395 CCAAAACGGTTTTGCACGAGT 60.468 47.619 31.19 2.99 46.58 4.18
699 810 3.551250 GGGAAATGTGTGTACCAAAACGG 60.551 47.826 0.00 0.00 42.50 4.44
722 833 7.606456 ACCATACGTCATCTTCACAAATAGTTT 59.394 33.333 0.00 0.00 0.00 2.66
724 835 6.640518 ACCATACGTCATCTTCACAAATAGT 58.359 36.000 0.00 0.00 0.00 2.12
739 850 6.127952 GGGAAGTCATAGATCTACCATACGTC 60.128 46.154 4.10 8.37 0.00 4.34
747 858 7.584122 TGTTACAGGGAAGTCATAGATCTAC 57.416 40.000 4.10 0.00 0.00 2.59
748 859 7.839705 AGTTGTTACAGGGAAGTCATAGATCTA 59.160 37.037 4.57 4.57 0.00 1.98
749 860 6.670027 AGTTGTTACAGGGAAGTCATAGATCT 59.330 38.462 0.00 0.00 0.00 2.75
750 861 6.879400 AGTTGTTACAGGGAAGTCATAGATC 58.121 40.000 0.00 0.00 0.00 2.75
751 862 6.875972 AGTTGTTACAGGGAAGTCATAGAT 57.124 37.500 0.00 0.00 0.00 1.98
752 863 6.464222 CAAGTTGTTACAGGGAAGTCATAGA 58.536 40.000 0.00 0.00 0.00 1.98
753 864 5.643777 CCAAGTTGTTACAGGGAAGTCATAG 59.356 44.000 1.45 0.00 0.00 2.23
754 865 5.308497 TCCAAGTTGTTACAGGGAAGTCATA 59.692 40.000 1.45 0.00 0.00 2.15
755 866 4.104102 TCCAAGTTGTTACAGGGAAGTCAT 59.896 41.667 1.45 0.00 0.00 3.06
756 867 3.456644 TCCAAGTTGTTACAGGGAAGTCA 59.543 43.478 1.45 0.00 0.00 3.41
757 868 4.065789 CTCCAAGTTGTTACAGGGAAGTC 58.934 47.826 1.45 0.00 31.12 3.01
762 873 8.840321 CATTATTATCTCCAAGTTGTTACAGGG 58.160 37.037 1.45 0.00 0.00 4.45
801 912 4.743057 TGGTGGATCAGAGTGTTATCTG 57.257 45.455 0.00 0.00 46.70 2.90
809 920 3.054802 GGACTGAAATGGTGGATCAGAGT 60.055 47.826 8.84 0.00 42.48 3.24
827 938 4.679373 AATAATCAGCGAGATGTGGACT 57.321 40.909 0.00 0.00 36.96 3.85
828 939 4.811024 TCAAATAATCAGCGAGATGTGGAC 59.189 41.667 0.00 0.00 36.96 4.02
829 940 5.022282 TCAAATAATCAGCGAGATGTGGA 57.978 39.130 0.00 0.00 36.96 4.02
830 941 5.739752 TTCAAATAATCAGCGAGATGTGG 57.260 39.130 0.00 0.00 36.96 4.17
1365 2641 0.685458 GCCCAGTCCTGCCATTGATT 60.685 55.000 0.00 0.00 0.00 2.57
1379 2664 0.693049 ACTAGACAAACCAGGCCCAG 59.307 55.000 0.00 0.00 0.00 4.45
1602 2888 2.126965 CTCGTCGGTGACCACGTC 60.127 66.667 20.21 0.00 37.30 4.34
1603 2889 3.667282 CCTCGTCGGTGACCACGT 61.667 66.667 20.21 0.00 37.30 4.49
1754 3043 1.302511 GCTGGAAGGCTCGGAACAA 60.303 57.895 0.00 0.00 0.00 2.83
1994 3286 1.134788 AGTCTGTGTGTTATAGGGCGC 60.135 52.381 0.00 0.00 0.00 6.53
2138 3430 9.823647 TGATATGAGTTCTAGTTTTGAAGATCC 57.176 33.333 0.00 0.00 0.00 3.36
2155 3447 9.770097 AAGTCATCGAAACATATTGATATGAGT 57.230 29.630 15.85 4.92 42.05 3.41
2182 3475 7.584108 TGTGCAATAGACATGACAACTTTTAG 58.416 34.615 0.00 0.00 0.00 1.85
2306 3602 4.744570 TCATGGCAAGTCTAGTTTCGTAG 58.255 43.478 0.00 0.00 0.00 3.51
2309 3605 3.125316 GGTTCATGGCAAGTCTAGTTTCG 59.875 47.826 0.00 0.00 0.00 3.46
2396 3693 4.832266 TGCAATTCCAGTACTTTGACCATT 59.168 37.500 8.83 0.00 0.00 3.16
2419 3716 9.165035 CATGGCAATTTTAGTATTTTGACCATT 57.835 29.630 0.00 0.00 35.62 3.16
2495 3792 6.043854 TGCCATGATGTTTACACTGTAGTA 57.956 37.500 0.00 0.00 0.00 1.82
2600 3900 8.587952 AGAAGTCCAATTAAAAATCCGTTTTG 57.412 30.769 0.00 0.00 39.79 2.44
2681 3984 4.855715 TTTTGCCACATCAAAACCGATA 57.144 36.364 0.00 0.00 39.99 2.92
2685 3990 5.335035 CCATTCATTTTGCCACATCAAAACC 60.335 40.000 4.11 0.00 45.28 3.27
2713 4018 2.613133 CAACATGGCCCAAACACTTTTG 59.387 45.455 0.00 0.00 41.71 2.44
2717 4022 1.494960 AACAACATGGCCCAAACACT 58.505 45.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.