Multiple sequence alignment - TraesCS5D01G253900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G253900 chr5D 100.000 5530 0 0 1 5530 360744709 360750238 0.000000e+00 10213.0
1 TraesCS5D01G253900 chr5D 95.364 151 1 1 2595 2739 72499039 72498889 9.260000e-58 235.0
2 TraesCS5D01G253900 chr5A 93.982 1861 85 11 759 2596 461516825 461518681 0.000000e+00 2791.0
3 TraesCS5D01G253900 chr5A 93.245 755 45 4 3686 4436 461519638 461520390 0.000000e+00 1107.0
4 TraesCS5D01G253900 chr5A 93.985 665 34 1 3049 3707 461518949 461519613 0.000000e+00 1002.0
5 TraesCS5D01G253900 chr5A 88.732 852 51 25 4433 5272 461520482 461521300 0.000000e+00 1000.0
6 TraesCS5D01G253900 chr5A 96.167 287 11 0 2735 3021 461518678 461518964 2.330000e-128 470.0
7 TraesCS5D01G253900 chr5A 97.605 167 4 0 5364 5530 461522511 461522677 2.520000e-73 287.0
8 TraesCS5D01G253900 chr5B 93.938 1864 70 20 773 2596 426063499 426065359 0.000000e+00 2776.0
9 TraesCS5D01G253900 chr5B 93.073 1718 90 15 3049 4751 426065627 426067330 0.000000e+00 2486.0
10 TraesCS5D01G253900 chr5B 91.753 485 17 7 5068 5530 426086506 426086989 0.000000e+00 652.0
11 TraesCS5D01G253900 chr5B 95.122 287 14 0 2735 3021 426065356 426065642 2.350000e-123 453.0
12 TraesCS5D01G253900 chr5B 91.262 103 7 2 773 874 426059043 426059144 7.470000e-29 139.0
13 TraesCS5D01G253900 chr5B 91.262 103 7 2 773 874 426061271 426061372 7.470000e-29 139.0
14 TraesCS5D01G253900 chr5B 90.385 104 7 3 773 874 426056815 426056917 3.480000e-27 134.0
15 TraesCS5D01G253900 chr5B 91.176 68 2 3 5009 5075 426071524 426071588 7.630000e-14 89.8
16 TraesCS5D01G253900 chr3D 95.958 767 26 5 1 765 214958973 214959736 0.000000e+00 1240.0
17 TraesCS5D01G253900 chr7D 95.573 768 30 4 1 768 151540380 151541143 0.000000e+00 1227.0
18 TraesCS5D01G253900 chr7D 95.784 759 29 3 1 757 114467582 114468339 0.000000e+00 1221.0
19 TraesCS5D01G253900 chr3A 95.789 760 28 3 1 757 660861541 660860783 0.000000e+00 1223.0
20 TraesCS5D01G253900 chr3A 94.667 150 8 0 2592 2741 41614328 41614477 3.330000e-57 233.0
21 TraesCS5D01G253900 chr2D 95.646 758 31 2 1 757 161897749 161898505 0.000000e+00 1216.0
22 TraesCS5D01G253900 chr2D 95.263 760 32 2 1 757 101660125 101660883 0.000000e+00 1201.0
23 TraesCS5D01G253900 chr2D 95.257 759 32 4 1 757 70391190 70391946 0.000000e+00 1199.0
24 TraesCS5D01G253900 chr6D 95.526 760 30 2 1 757 464214456 464213698 0.000000e+00 1212.0
25 TraesCS5D01G253900 chr6D 95.509 757 33 1 1 757 232765171 232765926 0.000000e+00 1208.0
26 TraesCS5D01G253900 chr6D 93.750 144 9 0 2592 2735 467805931 467806074 3.350000e-52 217.0
27 TraesCS5D01G253900 chr1D 99.310 145 1 0 2593 2737 334233674 334233818 4.250000e-66 263.0
28 TraesCS5D01G253900 chr3B 94.737 152 6 2 2587 2737 616891553 616891703 9.260000e-58 235.0
29 TraesCS5D01G253900 chr7B 93.750 144 9 0 2592 2735 640260781 640260924 3.350000e-52 217.0
30 TraesCS5D01G253900 chr4A 93.243 148 9 1 2596 2742 623949299 623949152 3.350000e-52 217.0
31 TraesCS5D01G253900 chr1B 94.326 141 8 0 2595 2735 27237906 27238046 3.350000e-52 217.0
32 TraesCS5D01G253900 chr2A 93.103 145 10 0 2595 2739 50059014 50059158 4.340000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G253900 chr5D 360744709 360750238 5529 False 10213.000000 10213 100.000000 1 5530 1 chr5D.!!$F1 5529
1 TraesCS5D01G253900 chr5A 461516825 461522677 5852 False 1109.500000 2791 93.952667 759 5530 6 chr5A.!!$F1 4771
2 TraesCS5D01G253900 chr5B 426056815 426067330 10515 False 1021.166667 2776 92.507000 773 4751 6 chr5B.!!$F3 3978
3 TraesCS5D01G253900 chr3D 214958973 214959736 763 False 1240.000000 1240 95.958000 1 765 1 chr3D.!!$F1 764
4 TraesCS5D01G253900 chr7D 151540380 151541143 763 False 1227.000000 1227 95.573000 1 768 1 chr7D.!!$F2 767
5 TraesCS5D01G253900 chr7D 114467582 114468339 757 False 1221.000000 1221 95.784000 1 757 1 chr7D.!!$F1 756
6 TraesCS5D01G253900 chr3A 660860783 660861541 758 True 1223.000000 1223 95.789000 1 757 1 chr3A.!!$R1 756
7 TraesCS5D01G253900 chr2D 161897749 161898505 756 False 1216.000000 1216 95.646000 1 757 1 chr2D.!!$F3 756
8 TraesCS5D01G253900 chr2D 101660125 101660883 758 False 1201.000000 1201 95.263000 1 757 1 chr2D.!!$F2 756
9 TraesCS5D01G253900 chr2D 70391190 70391946 756 False 1199.000000 1199 95.257000 1 757 1 chr2D.!!$F1 756
10 TraesCS5D01G253900 chr6D 464213698 464214456 758 True 1212.000000 1212 95.526000 1 757 1 chr6D.!!$R1 756
11 TraesCS5D01G253900 chr6D 232765171 232765926 755 False 1208.000000 1208 95.509000 1 757 1 chr6D.!!$F1 756


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 6759 0.033601 CCCAATCCAATCAACCGGGA 60.034 55.0 6.32 0.0 33.83 5.14 F
2617 8579 0.107897 CGTGTTCGGAATCCATCCCA 60.108 55.0 0.00 0.0 46.39 4.37 F
2652 8614 0.035458 CGGAGTTGGGAAGCTCAGTT 59.965 55.0 0.00 0.0 33.66 3.16 F
2673 8635 0.035820 AGGCCGCTCCGTAAAAATGA 60.036 50.0 0.00 0.0 40.77 2.57 F
4168 10185 0.321996 ACCGGAAGCTCCAGAAGAAC 59.678 55.0 9.46 0.0 35.91 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2633 8595 0.035458 AACTGAGCTTCCCAACTCCG 59.965 55.000 0.0 0.0 31.65 4.63 R
4149 10166 0.321996 GTTCTTCTGGAGCTTCCGGT 59.678 55.000 0.0 0.0 43.49 5.28 R
4176 10193 1.452108 ATACCGCCAAGCAAGCTCC 60.452 57.895 0.0 0.0 0.00 4.70 R
4179 10196 1.532868 CTATCATACCGCCAAGCAAGC 59.467 52.381 0.0 0.0 0.00 4.01 R
5219 11354 0.178990 GCCAAACACCTTCACTCCCT 60.179 55.000 0.0 0.0 0.00 4.20 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.073763 TGCCCTAGTGTGATTGCAAGT 59.926 47.619 4.94 0.00 0.00 3.16
263 269 2.087646 TTGTAGCGCAATATGGCAACA 58.912 42.857 11.47 0.50 41.52 3.33
264 270 2.489722 TTGTAGCGCAATATGGCAACAA 59.510 40.909 11.47 6.71 40.88 2.83
317 323 6.054295 AGTTTTAAAATCATGGCAACTGCAA 58.946 32.000 3.52 0.00 44.36 4.08
325 331 2.512692 TGGCAACTGCAATAGACCAT 57.487 45.000 3.76 0.00 44.36 3.55
704 712 1.279271 GTCCTCTTAGGCACCACACAT 59.721 52.381 0.00 0.00 34.61 3.21
776 784 7.858879 GGCGTCCGACAATTAATACAAATTTAT 59.141 33.333 0.00 0.00 0.00 1.40
843 6759 0.033601 CCCAATCCAATCAACCGGGA 60.034 55.000 6.32 0.00 33.83 5.14
870 6786 2.744202 CGGAAAGAATCAGGTCCTGTTG 59.256 50.000 18.65 0.00 32.61 3.33
1058 6994 4.803908 CCCGCCCAAAGCTCTCCC 62.804 72.222 0.00 0.00 40.39 4.30
1111 7050 2.418910 CGCCTCTCCATGTCGACCT 61.419 63.158 14.12 0.00 0.00 3.85
1116 7055 0.395862 TCTCCATGTCGACCTCCTCC 60.396 60.000 14.12 0.00 0.00 4.30
1245 7187 1.079819 CATGACGAACTGCCTCGGT 60.080 57.895 0.00 0.00 43.22 4.69
1329 7271 0.522076 CGTCGACCTACCTGTTACGC 60.522 60.000 10.58 0.00 0.00 4.42
1348 7290 3.816580 GAGGTTCTCGACAGTTCCC 57.183 57.895 0.00 0.00 0.00 3.97
1349 7291 0.109226 GAGGTTCTCGACAGTTCCCG 60.109 60.000 0.00 0.00 0.00 5.14
1361 7303 1.663702 GTTCCCGTGAGTGACCGTG 60.664 63.158 0.00 0.00 0.00 4.94
1386 7330 1.852157 TTGATGGGCAGGTGAGGGAC 61.852 60.000 0.00 0.00 0.00 4.46
1495 7439 1.449353 CAGGTATGCTCCTCAGCCC 59.551 63.158 0.00 0.00 46.26 5.19
1511 7455 4.717877 TCAGCCCTTACCATCATATGTTG 58.282 43.478 1.90 4.67 0.00 3.33
1556 7500 3.055167 TCAGGTATGCTTCAAGCTTGCTA 60.055 43.478 21.99 10.88 42.97 3.49
1560 7513 1.830279 TGCTTCAAGCTTGCTATGCT 58.170 45.000 21.99 0.00 42.97 3.79
1695 7649 8.743085 AAGCATTTGTTCATAGTCATGTCTAT 57.257 30.769 6.65 6.65 33.57 1.98
1880 7834 1.480545 ACAAGCCTTTGGTGGTTCAAC 59.519 47.619 0.00 0.00 38.66 3.18
1976 7930 6.019559 GCTCAGTTTTTCCAGTTGAATTTGTC 60.020 38.462 0.00 0.00 31.67 3.18
2040 7994 6.439375 TCCTACTAGTTTGCAATCTTACCAGA 59.561 38.462 14.92 5.51 0.00 3.86
2230 8186 4.278419 GTCTCCTCCTTCTCTCTTATGAGC 59.722 50.000 0.72 0.00 40.03 4.26
2433 8392 4.898861 AGGATCAGATCTCCTCCAAACTAC 59.101 45.833 18.18 0.00 38.87 2.73
2494 8455 9.253832 TCTTGGATTATTTTCTAAGATTGGCAA 57.746 29.630 0.68 0.68 38.03 4.52
2516 8478 9.208022 GGCAAAGAATGATTAAAAGCTTAAAGT 57.792 29.630 0.00 0.00 30.87 2.66
2602 8564 9.086758 AGTAAATATATCTACTTTAGGCCGTGT 57.913 33.333 0.00 0.00 0.00 4.49
2603 8565 9.702494 GTAAATATATCTACTTTAGGCCGTGTT 57.298 33.333 0.00 0.00 0.00 3.32
2604 8566 8.828688 AAATATATCTACTTTAGGCCGTGTTC 57.171 34.615 0.00 0.00 0.00 3.18
2605 8567 2.642139 TCTACTTTAGGCCGTGTTCG 57.358 50.000 0.00 0.00 0.00 3.95
2616 8578 2.690326 CGTGTTCGGAATCCATCCC 58.310 57.895 0.00 0.00 46.39 3.85
2617 8579 0.107897 CGTGTTCGGAATCCATCCCA 60.108 55.000 0.00 0.00 46.39 4.37
2618 8580 1.475034 CGTGTTCGGAATCCATCCCAT 60.475 52.381 0.00 0.00 46.39 4.00
2619 8581 2.222027 GTGTTCGGAATCCATCCCATC 58.778 52.381 0.00 0.00 46.39 3.51
2620 8582 1.142870 TGTTCGGAATCCATCCCATCC 59.857 52.381 0.00 0.00 46.39 3.51
2621 8583 4.701663 CGGAATCCATCCCATCCG 57.298 61.111 0.00 0.00 46.39 4.18
2622 8584 1.672356 CGGAATCCATCCCATCCGC 60.672 63.158 0.00 0.00 46.97 5.54
2623 8585 1.763770 GGAATCCATCCCATCCGCT 59.236 57.895 0.00 0.00 43.00 5.52
2624 8586 0.322008 GGAATCCATCCCATCCGCTC 60.322 60.000 0.00 0.00 43.00 5.03
2625 8587 0.322008 GAATCCATCCCATCCGCTCC 60.322 60.000 0.00 0.00 0.00 4.70
2626 8588 2.116983 AATCCATCCCATCCGCTCCG 62.117 60.000 0.00 0.00 0.00 4.63
2627 8589 3.233980 CCATCCCATCCGCTCCGA 61.234 66.667 0.00 0.00 0.00 4.55
2628 8590 2.029666 CATCCCATCCGCTCCGAC 59.970 66.667 0.00 0.00 0.00 4.79
2629 8591 2.123251 ATCCCATCCGCTCCGACT 60.123 61.111 0.00 0.00 0.00 4.18
2630 8592 2.203771 ATCCCATCCGCTCCGACTC 61.204 63.158 0.00 0.00 0.00 3.36
2631 8593 3.917760 CCCATCCGCTCCGACTCC 61.918 72.222 0.00 0.00 0.00 3.85
2632 8594 4.271816 CCATCCGCTCCGACTCCG 62.272 72.222 0.00 0.00 0.00 4.63
2633 8595 4.933064 CATCCGCTCCGACTCCGC 62.933 72.222 0.00 0.00 0.00 5.54
2645 8607 2.125512 CTCCGCGGAGTTGGGAAG 60.126 66.667 40.77 18.92 37.47 3.46
2646 8608 4.388499 TCCGCGGAGTTGGGAAGC 62.388 66.667 27.28 0.00 0.00 3.86
2647 8609 4.394712 CCGCGGAGTTGGGAAGCT 62.395 66.667 24.07 0.00 0.00 3.74
2648 8610 2.815647 CGCGGAGTTGGGAAGCTC 60.816 66.667 0.00 0.00 0.00 4.09
2649 8611 2.347490 GCGGAGTTGGGAAGCTCA 59.653 61.111 0.00 0.00 33.66 4.26
2650 8612 1.743252 GCGGAGTTGGGAAGCTCAG 60.743 63.158 0.00 0.00 33.66 3.35
2651 8613 1.674057 CGGAGTTGGGAAGCTCAGT 59.326 57.895 0.00 0.00 33.66 3.41
2652 8614 0.035458 CGGAGTTGGGAAGCTCAGTT 59.965 55.000 0.00 0.00 33.66 3.16
2653 8615 1.543429 CGGAGTTGGGAAGCTCAGTTT 60.543 52.381 0.00 0.00 33.66 2.66
2654 8616 2.289444 CGGAGTTGGGAAGCTCAGTTTA 60.289 50.000 0.00 0.00 33.66 2.01
2655 8617 3.339141 GGAGTTGGGAAGCTCAGTTTAG 58.661 50.000 0.00 0.00 33.66 1.85
2656 8618 3.339141 GAGTTGGGAAGCTCAGTTTAGG 58.661 50.000 0.00 0.00 0.00 2.69
2657 8619 1.813178 GTTGGGAAGCTCAGTTTAGGC 59.187 52.381 0.00 0.00 0.00 3.93
2658 8620 0.328258 TGGGAAGCTCAGTTTAGGCC 59.672 55.000 0.00 0.00 0.00 5.19
2659 8621 0.744771 GGGAAGCTCAGTTTAGGCCG 60.745 60.000 0.00 0.00 0.00 6.13
2660 8622 1.369839 GGAAGCTCAGTTTAGGCCGC 61.370 60.000 0.00 0.00 0.00 6.53
2661 8623 0.391793 GAAGCTCAGTTTAGGCCGCT 60.392 55.000 0.00 0.00 0.00 5.52
2662 8624 0.391793 AAGCTCAGTTTAGGCCGCTC 60.392 55.000 0.00 0.00 0.00 5.03
2663 8625 1.815840 GCTCAGTTTAGGCCGCTCC 60.816 63.158 0.00 0.00 0.00 4.70
2664 8626 1.519455 CTCAGTTTAGGCCGCTCCG 60.519 63.158 0.00 0.00 40.77 4.63
2665 8627 2.227089 CTCAGTTTAGGCCGCTCCGT 62.227 60.000 0.00 0.00 40.77 4.69
2666 8628 0.966875 TCAGTTTAGGCCGCTCCGTA 60.967 55.000 0.00 0.00 40.77 4.02
2667 8629 0.108520 CAGTTTAGGCCGCTCCGTAA 60.109 55.000 0.00 0.00 40.77 3.18
2668 8630 0.609662 AGTTTAGGCCGCTCCGTAAA 59.390 50.000 0.00 0.00 40.77 2.01
2669 8631 1.002315 AGTTTAGGCCGCTCCGTAAAA 59.998 47.619 0.00 0.00 40.77 1.52
2670 8632 1.805943 GTTTAGGCCGCTCCGTAAAAA 59.194 47.619 0.00 0.00 40.77 1.94
2671 8633 2.406596 TTAGGCCGCTCCGTAAAAAT 57.593 45.000 0.00 0.00 40.77 1.82
2672 8634 1.658994 TAGGCCGCTCCGTAAAAATG 58.341 50.000 0.00 0.00 40.77 2.32
2673 8635 0.035820 AGGCCGCTCCGTAAAAATGA 60.036 50.000 0.00 0.00 40.77 2.57
2674 8636 0.806241 GGCCGCTCCGTAAAAATGAA 59.194 50.000 0.00 0.00 0.00 2.57
2675 8637 1.466866 GGCCGCTCCGTAAAAATGAAC 60.467 52.381 0.00 0.00 0.00 3.18
2676 8638 1.467342 GCCGCTCCGTAAAAATGAACT 59.533 47.619 0.00 0.00 0.00 3.01
2677 8639 2.674357 GCCGCTCCGTAAAAATGAACTA 59.326 45.455 0.00 0.00 0.00 2.24
2678 8640 3.242316 GCCGCTCCGTAAAAATGAACTAG 60.242 47.826 0.00 0.00 0.00 2.57
2679 8641 4.178540 CCGCTCCGTAAAAATGAACTAGA 58.821 43.478 0.00 0.00 0.00 2.43
2680 8642 4.267928 CCGCTCCGTAAAAATGAACTAGAG 59.732 45.833 0.00 0.00 0.00 2.43
2681 8643 4.267928 CGCTCCGTAAAAATGAACTAGAGG 59.732 45.833 0.00 0.00 0.00 3.69
2682 8644 4.034163 GCTCCGTAAAAATGAACTAGAGGC 59.966 45.833 0.00 0.00 0.00 4.70
2683 8645 5.416271 TCCGTAAAAATGAACTAGAGGCT 57.584 39.130 0.00 0.00 0.00 4.58
2684 8646 5.416947 TCCGTAAAAATGAACTAGAGGCTC 58.583 41.667 6.34 6.34 0.00 4.70
2685 8647 4.267928 CCGTAAAAATGAACTAGAGGCTCG 59.732 45.833 9.22 0.00 0.00 5.03
2686 8648 4.863131 CGTAAAAATGAACTAGAGGCTCGT 59.137 41.667 9.22 0.00 0.00 4.18
2687 8649 5.004535 CGTAAAAATGAACTAGAGGCTCGTC 59.995 44.000 9.22 6.26 0.00 4.20
2688 8650 3.528597 AAATGAACTAGAGGCTCGTCC 57.471 47.619 9.22 0.00 0.00 4.79
2689 8651 1.025812 ATGAACTAGAGGCTCGTCCG 58.974 55.000 9.22 1.51 40.77 4.79
2690 8652 1.064458 GAACTAGAGGCTCGTCCGC 59.936 63.158 9.22 0.00 40.77 5.54
2692 8654 1.378124 AACTAGAGGCTCGTCCGCTC 61.378 60.000 9.22 0.00 41.47 5.03
2693 8655 2.516460 TAGAGGCTCGTCCGCTCC 60.516 66.667 9.22 0.00 41.47 4.70
2694 8656 3.339738 TAGAGGCTCGTCCGCTCCA 62.340 63.158 9.22 0.00 41.47 3.86
2695 8657 4.200283 GAGGCTCGTCCGCTCCAG 62.200 72.222 0.00 0.00 40.77 3.86
2696 8658 4.742649 AGGCTCGTCCGCTCCAGA 62.743 66.667 0.00 0.00 40.77 3.86
2697 8659 4.200283 GGCTCGTCCGCTCCAGAG 62.200 72.222 0.00 0.00 0.00 3.35
2708 8670 2.363018 TCCAGAGCGGAGTGGAGG 60.363 66.667 0.00 0.00 39.64 4.30
2709 8671 3.465403 CCAGAGCGGAGTGGAGGG 61.465 72.222 0.00 0.00 35.67 4.30
2710 8672 2.363018 CAGAGCGGAGTGGAGGGA 60.363 66.667 0.00 0.00 0.00 4.20
2711 8673 2.043450 AGAGCGGAGTGGAGGGAG 60.043 66.667 0.00 0.00 0.00 4.30
2712 8674 3.844090 GAGCGGAGTGGAGGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
2716 8678 3.151022 GGAGTGGAGGGAGCGGAG 61.151 72.222 0.00 0.00 0.00 4.63
2717 8679 2.043852 GAGTGGAGGGAGCGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
2718 8680 2.043450 AGTGGAGGGAGCGGAGAG 60.043 66.667 0.00 0.00 0.00 3.20
2719 8681 3.151022 GTGGAGGGAGCGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
2720 8682 3.347590 TGGAGGGAGCGGAGAGGA 61.348 66.667 0.00 0.00 0.00 3.71
2721 8683 2.520741 GGAGGGAGCGGAGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
2722 8684 3.223589 GAGGGAGCGGAGAGGAGC 61.224 72.222 0.00 0.00 0.00 4.70
2723 8685 4.851214 AGGGAGCGGAGAGGAGCC 62.851 72.222 0.00 0.00 0.00 4.70
2730 8692 4.856607 GGAGAGGAGCCGAACGCG 62.857 72.222 3.53 3.53 44.76 6.01
2753 8715 3.125316 GCCTTAGTGTTGTGTAGTGCATC 59.875 47.826 0.00 0.00 0.00 3.91
2793 8755 1.734465 GAAATGTTCCTGCTGAGACCG 59.266 52.381 0.00 0.00 0.00 4.79
2802 8764 1.446966 GCTGAGACCGCCTTCTGTC 60.447 63.158 0.00 0.00 0.00 3.51
2817 8779 6.183360 CGCCTTCTGTCGTTACATTATTTTCT 60.183 38.462 0.00 0.00 34.37 2.52
3009 8971 1.271054 CCTCCCCAGTTGACTTCACTG 60.271 57.143 0.00 0.00 0.00 3.66
3010 8972 1.694150 CTCCCCAGTTGACTTCACTGA 59.306 52.381 1.54 0.00 33.65 3.41
3011 8973 1.416401 TCCCCAGTTGACTTCACTGAC 59.584 52.381 1.54 0.00 33.65 3.51
3012 8974 1.543429 CCCCAGTTGACTTCACTGACC 60.543 57.143 1.54 0.00 33.65 4.02
3013 8975 1.140852 CCCAGTTGACTTCACTGACCA 59.859 52.381 1.54 0.00 33.65 4.02
3014 8976 2.421388 CCCAGTTGACTTCACTGACCAA 60.421 50.000 1.54 0.00 33.65 3.67
3015 8977 2.874701 CCAGTTGACTTCACTGACCAAG 59.125 50.000 1.54 0.00 33.65 3.61
3016 8978 2.289002 CAGTTGACTTCACTGACCAAGC 59.711 50.000 0.00 0.00 33.65 4.01
3017 8979 2.171448 AGTTGACTTCACTGACCAAGCT 59.829 45.455 0.00 0.00 0.00 3.74
3018 8980 2.945668 GTTGACTTCACTGACCAAGCTT 59.054 45.455 0.00 0.00 0.00 3.74
3019 8981 2.564771 TGACTTCACTGACCAAGCTTG 58.435 47.619 19.93 19.93 0.00 4.01
3020 8982 2.170397 TGACTTCACTGACCAAGCTTGA 59.830 45.455 28.05 7.10 0.00 3.02
3021 8983 3.206150 GACTTCACTGACCAAGCTTGAA 58.794 45.455 28.05 11.09 0.00 2.69
3022 8984 3.209410 ACTTCACTGACCAAGCTTGAAG 58.791 45.455 28.05 21.52 37.76 3.02
3023 8985 1.597742 TCACTGACCAAGCTTGAAGC 58.402 50.000 28.05 9.59 42.84 3.86
3038 9000 6.924629 GCTTGAAGCTTAAGAATTGTCTTG 57.075 37.500 10.44 0.00 40.30 3.02
3039 9001 5.344396 GCTTGAAGCTTAAGAATTGTCTTGC 59.656 40.000 10.44 0.00 40.30 4.01
3040 9002 6.389830 TTGAAGCTTAAGAATTGTCTTGCA 57.610 33.333 6.67 0.00 44.12 4.08
3041 9003 5.762045 TGAAGCTTAAGAATTGTCTTGCAC 58.238 37.500 6.67 0.00 44.12 4.57
3042 9004 5.299028 TGAAGCTTAAGAATTGTCTTGCACA 59.701 36.000 6.67 0.00 44.12 4.57
3085 9047 8.579850 TTGACATATTGAGCTTGGAATACTTT 57.420 30.769 0.00 0.00 0.00 2.66
3215 9183 6.985188 TGTTTTGAGACAATATAGTCCAGC 57.015 37.500 0.00 0.00 39.34 4.85
3216 9184 6.472016 TGTTTTGAGACAATATAGTCCAGCA 58.528 36.000 0.00 0.00 39.34 4.41
3217 9185 6.595326 TGTTTTGAGACAATATAGTCCAGCAG 59.405 38.462 0.00 0.00 39.34 4.24
3262 9230 1.900254 TATCCACTGCCCACCCATAA 58.100 50.000 0.00 0.00 0.00 1.90
3397 9365 4.963276 TGAGGTTGTGTTTTCTGACTTG 57.037 40.909 0.00 0.00 0.00 3.16
3403 9372 2.163412 TGTGTTTTCTGACTTGCGCTTT 59.837 40.909 9.73 0.00 0.00 3.51
3654 9623 6.529125 GTGGCTGTATTCATTTTGTTGAGATG 59.471 38.462 0.00 0.00 0.00 2.90
3674 9643 4.781775 TGTTTCCTGGGAACTTGAGTTA 57.218 40.909 18.42 0.00 38.56 2.24
3820 9835 6.877611 AAATGTTGACAAGGTAACCTACAG 57.122 37.500 0.00 0.00 31.13 2.74
4013 10028 0.687354 TTCTTCCCAGTCTGGCTGTC 59.313 55.000 13.99 0.00 43.55 3.51
4020 10035 1.475751 CCAGTCTGGCTGTCAACACTT 60.476 52.381 5.79 0.00 43.55 3.16
4032 10047 5.506317 GCTGTCAACACTTCTTAAGCATGTT 60.506 40.000 11.03 11.03 33.86 2.71
4100 10117 4.942852 AGTCAAAAATTTCCATTGCGTCA 58.057 34.783 0.00 0.00 0.00 4.35
4101 10118 4.984161 AGTCAAAAATTTCCATTGCGTCAG 59.016 37.500 0.00 0.00 0.00 3.51
4105 10122 2.900122 ATTTCCATTGCGTCAGTTCG 57.100 45.000 0.00 0.00 0.00 3.95
4106 10123 1.872388 TTTCCATTGCGTCAGTTCGA 58.128 45.000 0.00 0.00 0.00 3.71
4126 10143 9.988350 AGTTCGATAGTTTGTTTATGCTTATTG 57.012 29.630 0.00 0.00 37.40 1.90
4149 10166 9.739276 ATTGATTATTCTGAAACACAGGTTCTA 57.261 29.630 0.00 0.00 45.76 2.10
4152 10169 3.380479 TCTGAAACACAGGTTCTACCG 57.620 47.619 0.00 0.00 44.90 4.02
4168 10185 0.321996 ACCGGAAGCTCCAGAAGAAC 59.678 55.000 9.46 0.00 35.91 3.01
4176 10193 4.181309 AGCTCCAGAAGAACTAGTTTCG 57.819 45.455 10.02 1.67 39.47 3.46
4179 10196 4.739195 CTCCAGAAGAACTAGTTTCGGAG 58.261 47.826 20.91 20.91 39.47 4.63
4196 10213 0.744414 GAGCTTGCTTGGCGGTATGA 60.744 55.000 0.00 0.00 34.52 2.15
4205 10222 3.248602 GCTTGGCGGTATGATAGTTTCTG 59.751 47.826 0.00 0.00 0.00 3.02
4226 10243 2.702270 AGCTTCCCCTTGTTTTCCAT 57.298 45.000 0.00 0.00 0.00 3.41
4227 10244 2.976440 AGCTTCCCCTTGTTTTCCATT 58.024 42.857 0.00 0.00 0.00 3.16
4231 10248 5.012046 AGCTTCCCCTTGTTTTCCATTTAAG 59.988 40.000 0.00 0.00 0.00 1.85
4232 10249 5.011635 GCTTCCCCTTGTTTTCCATTTAAGA 59.988 40.000 0.00 0.00 0.00 2.10
4248 10265 8.156165 TCCATTTAAGAGCAATTTTTGAACCAT 58.844 29.630 0.00 0.00 0.00 3.55
4258 10275 7.499895 AGCAATTTTTGAACCATCAGATTGTTT 59.500 29.630 1.52 0.00 36.10 2.83
4270 10287 7.335422 ACCATCAGATTGTTTGTTCATCTCTAC 59.665 37.037 0.00 0.00 0.00 2.59
4292 10311 6.170675 ACGTATGAAACTGAAGAAAGCATC 57.829 37.500 0.00 0.00 0.00 3.91
4296 10315 7.848051 CGTATGAAACTGAAGAAAGCATCATAC 59.152 37.037 10.87 10.87 40.85 2.39
4438 10552 6.486253 TTTTATGCTTCTTGCTCAGTAGTG 57.514 37.500 0.00 0.00 43.37 2.74
4569 10683 2.726066 GCACTTGCTCGTGACAATAAGC 60.726 50.000 9.63 0.00 37.06 3.09
4579 10693 1.804151 TGACAATAAGCGGTGCACTTC 59.196 47.619 17.98 8.75 0.00 3.01
4741 10867 2.682856 TGAAAGTGGTCACTGTTTCTGC 59.317 45.455 4.22 0.00 41.58 4.26
4771 10897 2.954318 GCATCTGGTATGCTCCATTGTT 59.046 45.455 2.78 0.00 41.52 2.83
4797 10923 3.947910 AAATCATGTTTGGAGTGCTGG 57.052 42.857 0.00 0.00 0.00 4.85
4805 10931 3.006247 GTTTGGAGTGCTGGAGAAGATC 58.994 50.000 0.00 0.00 0.00 2.75
4854 10981 3.312421 TGTCTTGTGTAAAGTTGCAGAGC 59.688 43.478 0.00 0.00 0.00 4.09
4865 10992 2.899339 GCAGAGCTCGCCCCAATC 60.899 66.667 16.50 0.00 0.00 2.67
4868 10995 0.393537 CAGAGCTCGCCCCAATCTTT 60.394 55.000 8.37 0.00 0.00 2.52
4875 11002 0.670239 CGCCCCAATCTTTGTTTGCC 60.670 55.000 0.00 0.00 0.00 4.52
4896 11023 4.394920 GCCGAATTAACCATTTGACTCTGA 59.605 41.667 0.00 0.00 0.00 3.27
4899 11026 6.183360 CCGAATTAACCATTTGACTCTGACTC 60.183 42.308 0.00 0.00 0.00 3.36
4908 11035 2.201732 TGACTCTGACTCGTGCAAAAC 58.798 47.619 0.00 0.00 0.00 2.43
4931 11058 3.066900 CGTTTTGGTACACACATTTCCCA 59.933 43.478 0.00 0.00 39.29 4.37
4933 11060 5.420409 GTTTTGGTACACACATTTCCCAAA 58.580 37.500 0.00 0.00 39.29 3.28
4948 11075 8.090214 ACATTTCCCAAACTATTTGTGAAGATG 58.910 33.333 13.37 13.37 38.07 2.90
4956 11083 7.539712 AACTATTTGTGAAGATGACGTATGG 57.460 36.000 0.00 0.00 0.00 2.74
4957 11084 6.640518 ACTATTTGTGAAGATGACGTATGGT 58.359 36.000 0.00 0.00 0.00 3.55
4958 11085 7.778083 ACTATTTGTGAAGATGACGTATGGTA 58.222 34.615 0.00 0.00 0.00 3.25
4959 11086 7.921214 ACTATTTGTGAAGATGACGTATGGTAG 59.079 37.037 0.00 0.00 0.00 3.18
4960 11087 5.907866 TTGTGAAGATGACGTATGGTAGA 57.092 39.130 0.00 0.00 0.00 2.59
4961 11088 6.465439 TTGTGAAGATGACGTATGGTAGAT 57.535 37.500 0.00 0.00 0.00 1.98
4962 11089 6.073327 TGTGAAGATGACGTATGGTAGATC 57.927 41.667 0.00 0.00 0.00 2.75
4963 11090 5.828328 TGTGAAGATGACGTATGGTAGATCT 59.172 40.000 0.00 0.00 32.06 2.75
4964 11091 6.996282 TGTGAAGATGACGTATGGTAGATCTA 59.004 38.462 0.00 0.00 31.06 1.98
4965 11092 7.665974 TGTGAAGATGACGTATGGTAGATCTAT 59.334 37.037 5.57 0.00 31.06 1.98
4966 11093 7.965655 GTGAAGATGACGTATGGTAGATCTATG 59.034 40.741 5.57 0.00 31.06 2.23
4971 11098 7.436430 TGACGTATGGTAGATCTATGACTTC 57.564 40.000 5.57 5.94 0.00 3.01
4973 11100 5.711036 ACGTATGGTAGATCTATGACTTCCC 59.289 44.000 5.57 1.09 0.00 3.97
4977 11104 6.275692 TGGTAGATCTATGACTTCCCTGTA 57.724 41.667 5.57 0.00 0.00 2.74
4984 11111 6.681729 TCTATGACTTCCCTGTAACAACTT 57.318 37.500 0.00 0.00 0.00 2.66
4985 11112 6.464222 TCTATGACTTCCCTGTAACAACTTG 58.536 40.000 0.00 0.00 0.00 3.16
4986 11113 3.815809 TGACTTCCCTGTAACAACTTGG 58.184 45.455 0.00 0.00 0.00 3.61
4987 11114 3.456644 TGACTTCCCTGTAACAACTTGGA 59.543 43.478 0.00 0.00 0.00 3.53
4988 11115 4.065789 GACTTCCCTGTAACAACTTGGAG 58.934 47.826 0.00 0.00 0.00 3.86
4990 11117 4.351111 ACTTCCCTGTAACAACTTGGAGAT 59.649 41.667 0.00 0.00 0.00 2.75
4993 11120 6.636454 TCCCTGTAACAACTTGGAGATAAT 57.364 37.500 0.00 0.00 0.00 1.28
4994 11121 7.743116 TCCCTGTAACAACTTGGAGATAATA 57.257 36.000 0.00 0.00 0.00 0.98
4996 11123 8.778059 TCCCTGTAACAACTTGGAGATAATAAT 58.222 33.333 0.00 0.00 0.00 1.28
4997 11124 8.840321 CCCTGTAACAACTTGGAGATAATAATG 58.160 37.037 0.00 0.00 0.00 1.90
5036 11163 4.371624 AACACTCTGATCCACCATTTCA 57.628 40.909 0.00 0.00 0.00 2.69
5041 11169 2.912295 TCTGATCCACCATTTCAGTCCA 59.088 45.455 0.00 0.00 38.39 4.02
5042 11170 3.012518 CTGATCCACCATTTCAGTCCAC 58.987 50.000 0.00 0.00 33.72 4.02
5043 11171 2.374839 TGATCCACCATTTCAGTCCACA 59.625 45.455 0.00 0.00 0.00 4.17
5049 11177 1.667724 CCATTTCAGTCCACATCTCGC 59.332 52.381 0.00 0.00 0.00 5.03
5053 11181 1.478631 TCAGTCCACATCTCGCTGAT 58.521 50.000 0.00 0.00 32.09 2.90
5062 11190 6.017605 GTCCACATCTCGCTGATTATTTGAAT 60.018 38.462 0.00 0.00 32.05 2.57
5066 11194 9.720667 CACATCTCGCTGATTATTTGAATTAAA 57.279 29.630 0.00 0.00 32.05 1.52
5111 11239 4.230314 GAGTTTTGACTCCTTGGAAAGC 57.770 45.455 0.00 0.00 44.44 3.51
5221 11356 2.183409 CCAACAATGGCGGAGAAGG 58.817 57.895 0.00 0.00 40.58 3.46
5222 11357 1.315257 CCAACAATGGCGGAGAAGGG 61.315 60.000 0.00 0.00 40.58 3.95
5223 11358 0.322456 CAACAATGGCGGAGAAGGGA 60.322 55.000 0.00 0.00 0.00 4.20
5224 11359 0.035056 AACAATGGCGGAGAAGGGAG 60.035 55.000 0.00 0.00 0.00 4.30
5225 11360 1.201429 ACAATGGCGGAGAAGGGAGT 61.201 55.000 0.00 0.00 0.00 3.85
5268 11403 4.935495 CCGATGGCCATCCGGGTG 62.935 72.222 34.76 22.10 39.65 4.61
5300 11435 3.766691 GCTGAAGGGCGTCGGGTA 61.767 66.667 0.00 0.00 0.00 3.69
5301 11436 2.183555 CTGAAGGGCGTCGGGTAC 59.816 66.667 0.00 0.00 0.00 3.34
5320 11455 1.712663 GAGTACGTCGACGAGGACC 59.287 63.158 41.52 22.79 43.02 4.46
5321 11456 0.739112 GAGTACGTCGACGAGGACCT 60.739 60.000 41.52 26.47 43.02 3.85
5322 11457 0.739112 AGTACGTCGACGAGGACCTC 60.739 60.000 41.52 21.44 43.02 3.85
5331 11466 2.125350 GAGGACCTCGCCAGCAAG 60.125 66.667 5.55 0.00 0.00 4.01
5332 11467 2.604686 AGGACCTCGCCAGCAAGA 60.605 61.111 0.00 0.00 0.00 3.02
5333 11468 2.125350 GGACCTCGCCAGCAAGAG 60.125 66.667 0.00 0.00 0.00 2.85
5416 12670 3.822192 CGATCGCCGAGTCCACCA 61.822 66.667 0.26 0.00 41.76 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 83 3.788333 AACATATGGCAACTGACATGC 57.212 42.857 8.36 0.00 44.95 4.06
252 258 6.481643 ACTAACACTAGGTTGTTGCCATATT 58.518 36.000 8.58 0.00 40.04 1.28
254 260 5.492855 ACTAACACTAGGTTGTTGCCATA 57.507 39.130 8.58 0.00 40.04 2.74
263 269 3.513517 TGCCACCTACTAACACTAGGTT 58.486 45.455 0.00 0.00 41.13 3.50
264 270 3.179902 TGCCACCTACTAACACTAGGT 57.820 47.619 0.00 0.00 44.20 3.08
371 377 5.010012 CAGTTGCCATCTTAGGTCAAAGTTT 59.990 40.000 0.00 0.00 0.00 2.66
679 687 1.268283 GGTGCCTAAGAGGACCAGCT 61.268 60.000 0.00 0.00 37.67 4.24
704 712 0.981183 AGGAATCTGCCCACACGTTA 59.019 50.000 0.00 0.00 0.00 3.18
843 6759 4.226168 AGGACCTGATTCTTTCCGAGATTT 59.774 41.667 0.00 0.00 33.49 2.17
870 6786 1.556911 TGAGAAAGGAGGGTGATGCTC 59.443 52.381 0.00 0.00 0.00 4.26
1065 7001 1.304547 AGTGGAGGACGGTGAGAGG 60.305 63.158 0.00 0.00 0.00 3.69
1224 7166 2.434884 AGGCAGTTCGTCATGGCG 60.435 61.111 14.91 14.91 45.91 5.69
1245 7187 1.304217 GAGGTCGAGGTGGGTCTCA 60.304 63.158 0.00 0.00 33.59 3.27
1341 7283 1.372997 CGGTCACTCACGGGAACTG 60.373 63.158 0.00 0.00 42.99 3.16
1342 7284 1.831286 ACGGTCACTCACGGGAACT 60.831 57.895 0.00 0.00 0.00 3.01
1348 7290 2.355837 CACCCACGGTCACTCACG 60.356 66.667 0.00 0.00 31.02 4.35
1349 7291 0.463116 AAACACCCACGGTCACTCAC 60.463 55.000 0.00 0.00 31.02 3.51
1361 7303 1.228862 ACCTGCCCATCAAACACCC 60.229 57.895 0.00 0.00 0.00 4.61
1386 7330 2.513204 TCCCCGCTCTCGTAGACG 60.513 66.667 0.00 0.00 41.45 4.18
1511 7455 8.613060 TGAAGAATCCTATGCTTATCAACATC 57.387 34.615 0.00 0.00 0.00 3.06
1571 7524 0.325933 AACCTGCAGCATACAGAGCA 59.674 50.000 8.66 0.00 37.32 4.26
1572 7525 1.457346 AAACCTGCAGCATACAGAGC 58.543 50.000 8.66 0.00 37.32 4.09
1574 7527 3.423539 AGAAAACCTGCAGCATACAGA 57.576 42.857 8.66 0.00 37.32 3.41
1576 7529 4.253685 GAGTAGAAAACCTGCAGCATACA 58.746 43.478 8.66 0.00 0.00 2.29
1582 7535 7.615582 TGAATTATGAGTAGAAAACCTGCAG 57.384 36.000 6.78 6.78 0.00 4.41
1619 7572 5.579904 GGAACGTCATAACTTTAAGAGGGAC 59.420 44.000 0.00 0.53 0.00 4.46
1667 7621 9.013229 AGACATGACTATGAACAAATGCTTTTA 57.987 29.630 0.00 0.00 37.73 1.52
1668 7622 7.889469 AGACATGACTATGAACAAATGCTTTT 58.111 30.769 0.00 0.00 37.73 2.27
1669 7623 7.458409 AGACATGACTATGAACAAATGCTTT 57.542 32.000 0.00 0.00 37.73 3.51
1695 7649 1.070242 CAACGTTGTGCGCATCAACTA 60.070 47.619 32.72 12.94 46.11 2.24
1880 7834 1.066573 GGAGTGATGTGACTGGTCCTG 60.067 57.143 0.00 0.00 0.00 3.86
1976 7930 1.478510 AGCATGAGTTAGGTCTCACCG 59.521 52.381 0.00 0.00 45.40 4.94
2040 7994 7.994911 TGATTAGCACTTCCATCAAGATTATGT 59.005 33.333 0.00 0.00 35.82 2.29
2230 8186 2.107950 TGCCTGTAACAAGGAATCCG 57.892 50.000 0.00 0.00 40.02 4.18
2516 8478 7.821359 CAGAAACCTTCTTACAGAATGATGAGA 59.179 37.037 0.00 0.00 36.38 3.27
2539 8501 6.097356 ACGATAAACTTCAATAACTCGCAGA 58.903 36.000 0.00 0.00 0.00 4.26
2544 8506 9.530129 CAAGTGAACGATAAACTTCAATAACTC 57.470 33.333 0.00 0.00 31.88 3.01
2592 8554 0.108041 GGATTCCGAACACGGCCTAA 60.108 55.000 0.00 0.00 45.52 2.69
2593 8555 1.259142 TGGATTCCGAACACGGCCTA 61.259 55.000 0.00 0.00 45.52 3.93
2594 8556 1.910580 ATGGATTCCGAACACGGCCT 61.911 55.000 0.00 0.00 45.52 5.19
2595 8557 1.436983 GATGGATTCCGAACACGGCC 61.437 60.000 3.67 0.00 45.52 6.13
2596 8558 1.436983 GGATGGATTCCGAACACGGC 61.437 60.000 3.67 0.00 45.52 5.68
2597 8559 0.814010 GGGATGGATTCCGAACACGG 60.814 60.000 0.00 0.00 46.52 4.94
2598 8560 0.107897 TGGGATGGATTCCGAACACG 60.108 55.000 0.00 0.00 46.52 4.49
2599 8561 2.222027 GATGGGATGGATTCCGAACAC 58.778 52.381 0.00 0.00 46.52 3.32
2600 8562 1.142870 GGATGGGATGGATTCCGAACA 59.857 52.381 0.00 0.00 46.52 3.18
2601 8563 1.897560 GGATGGGATGGATTCCGAAC 58.102 55.000 0.00 0.00 46.52 3.95
2604 8566 4.701663 CGGATGGGATGGATTCCG 57.298 61.111 0.00 0.00 46.52 4.30
2605 8567 0.322008 GAGCGGATGGGATGGATTCC 60.322 60.000 0.00 0.00 44.62 3.01
2606 8568 0.322008 GGAGCGGATGGGATGGATTC 60.322 60.000 0.00 0.00 0.00 2.52
2607 8569 1.763770 GGAGCGGATGGGATGGATT 59.236 57.895 0.00 0.00 0.00 3.01
2608 8570 2.587247 CGGAGCGGATGGGATGGAT 61.587 63.158 0.00 0.00 0.00 3.41
2609 8571 3.233980 CGGAGCGGATGGGATGGA 61.234 66.667 0.00 0.00 0.00 3.41
2610 8572 3.233980 TCGGAGCGGATGGGATGG 61.234 66.667 0.00 0.00 0.00 3.51
2611 8573 2.029666 GTCGGAGCGGATGGGATG 59.970 66.667 0.00 0.00 0.00 3.51
2612 8574 2.123251 AGTCGGAGCGGATGGGAT 60.123 61.111 0.00 0.00 0.00 3.85
2613 8575 2.833582 GAGTCGGAGCGGATGGGA 60.834 66.667 0.00 0.00 0.00 4.37
2614 8576 3.917760 GGAGTCGGAGCGGATGGG 61.918 72.222 0.00 0.00 0.00 4.00
2615 8577 4.271816 CGGAGTCGGAGCGGATGG 62.272 72.222 0.00 0.00 0.00 3.51
2616 8578 4.933064 GCGGAGTCGGAGCGGATG 62.933 72.222 1.18 0.00 36.79 3.51
2628 8590 2.125512 CTTCCCAACTCCGCGGAG 60.126 66.667 45.26 45.26 46.91 4.63
2629 8591 4.388499 GCTTCCCAACTCCGCGGA 62.388 66.667 29.03 29.03 0.00 5.54
2630 8592 4.394712 AGCTTCCCAACTCCGCGG 62.395 66.667 22.12 22.12 0.00 6.46
2631 8593 2.815647 GAGCTTCCCAACTCCGCG 60.816 66.667 0.00 0.00 0.00 6.46
2632 8594 1.743252 CTGAGCTTCCCAACTCCGC 60.743 63.158 0.00 0.00 31.65 5.54
2633 8595 0.035458 AACTGAGCTTCCCAACTCCG 59.965 55.000 0.00 0.00 31.65 4.63
2634 8596 2.278332 AAACTGAGCTTCCCAACTCC 57.722 50.000 0.00 0.00 31.65 3.85
2635 8597 3.339141 CCTAAACTGAGCTTCCCAACTC 58.661 50.000 0.00 0.00 0.00 3.01
2636 8598 2.553247 GCCTAAACTGAGCTTCCCAACT 60.553 50.000 0.00 0.00 0.00 3.16
2637 8599 1.813178 GCCTAAACTGAGCTTCCCAAC 59.187 52.381 0.00 0.00 0.00 3.77
2638 8600 1.271926 GGCCTAAACTGAGCTTCCCAA 60.272 52.381 0.00 0.00 0.00 4.12
2639 8601 0.328258 GGCCTAAACTGAGCTTCCCA 59.672 55.000 0.00 0.00 0.00 4.37
2640 8602 0.744771 CGGCCTAAACTGAGCTTCCC 60.745 60.000 0.00 0.00 0.00 3.97
2641 8603 1.369839 GCGGCCTAAACTGAGCTTCC 61.370 60.000 0.00 0.00 0.00 3.46
2642 8604 0.391793 AGCGGCCTAAACTGAGCTTC 60.392 55.000 0.00 0.00 0.00 3.86
2643 8605 0.391793 GAGCGGCCTAAACTGAGCTT 60.392 55.000 0.00 0.00 34.85 3.74
2644 8606 1.219393 GAGCGGCCTAAACTGAGCT 59.781 57.895 0.00 0.00 37.69 4.09
2645 8607 1.815840 GGAGCGGCCTAAACTGAGC 60.816 63.158 0.00 0.00 0.00 4.26
2646 8608 1.519455 CGGAGCGGCCTAAACTGAG 60.519 63.158 0.00 0.00 0.00 3.35
2647 8609 0.966875 TACGGAGCGGCCTAAACTGA 60.967 55.000 0.00 0.00 0.00 3.41
2648 8610 0.108520 TTACGGAGCGGCCTAAACTG 60.109 55.000 0.00 0.00 0.00 3.16
2649 8611 0.609662 TTTACGGAGCGGCCTAAACT 59.390 50.000 0.00 0.00 0.00 2.66
2650 8612 1.441738 TTTTACGGAGCGGCCTAAAC 58.558 50.000 0.00 0.00 0.00 2.01
2651 8613 2.181954 TTTTTACGGAGCGGCCTAAA 57.818 45.000 0.00 0.00 0.00 1.85
2652 8614 2.011222 CATTTTTACGGAGCGGCCTAA 58.989 47.619 0.00 0.00 0.00 2.69
2653 8615 1.207570 TCATTTTTACGGAGCGGCCTA 59.792 47.619 0.00 0.00 0.00 3.93
2654 8616 0.035820 TCATTTTTACGGAGCGGCCT 60.036 50.000 0.00 0.00 0.00 5.19
2655 8617 0.806241 TTCATTTTTACGGAGCGGCC 59.194 50.000 0.00 0.00 0.00 6.13
2656 8618 1.467342 AGTTCATTTTTACGGAGCGGC 59.533 47.619 0.00 0.00 0.00 6.53
2657 8619 4.178540 TCTAGTTCATTTTTACGGAGCGG 58.821 43.478 0.00 0.00 0.00 5.52
2658 8620 4.267928 CCTCTAGTTCATTTTTACGGAGCG 59.732 45.833 0.00 0.00 0.00 5.03
2659 8621 4.034163 GCCTCTAGTTCATTTTTACGGAGC 59.966 45.833 0.00 0.00 0.00 4.70
2660 8622 5.420409 AGCCTCTAGTTCATTTTTACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2661 8623 5.416271 AGCCTCTAGTTCATTTTTACGGA 57.584 39.130 0.00 0.00 0.00 4.69
2662 8624 4.267928 CGAGCCTCTAGTTCATTTTTACGG 59.732 45.833 0.00 0.00 0.00 4.02
2663 8625 4.863131 ACGAGCCTCTAGTTCATTTTTACG 59.137 41.667 0.00 0.00 0.00 3.18
2664 8626 5.291371 GGACGAGCCTCTAGTTCATTTTTAC 59.709 44.000 0.00 0.00 0.00 2.01
2665 8627 5.416947 GGACGAGCCTCTAGTTCATTTTTA 58.583 41.667 0.00 0.00 0.00 1.52
2666 8628 4.254492 GGACGAGCCTCTAGTTCATTTTT 58.746 43.478 0.00 0.00 0.00 1.94
2667 8629 3.676324 CGGACGAGCCTCTAGTTCATTTT 60.676 47.826 0.00 0.00 0.00 1.82
2668 8630 2.159226 CGGACGAGCCTCTAGTTCATTT 60.159 50.000 0.00 0.00 0.00 2.32
2669 8631 1.405821 CGGACGAGCCTCTAGTTCATT 59.594 52.381 0.00 0.00 0.00 2.57
2670 8632 1.025812 CGGACGAGCCTCTAGTTCAT 58.974 55.000 0.00 0.00 0.00 2.57
2671 8633 1.654954 GCGGACGAGCCTCTAGTTCA 61.655 60.000 0.00 0.00 0.00 3.18
2672 8634 1.064458 GCGGACGAGCCTCTAGTTC 59.936 63.158 0.00 0.00 0.00 3.01
2673 8635 1.378124 GAGCGGACGAGCCTCTAGTT 61.378 60.000 0.00 0.00 38.01 2.24
2674 8636 1.820481 GAGCGGACGAGCCTCTAGT 60.820 63.158 0.00 0.00 38.01 2.57
2675 8637 2.548295 GGAGCGGACGAGCCTCTAG 61.548 68.421 0.00 0.00 38.01 2.43
2676 8638 2.516460 GGAGCGGACGAGCCTCTA 60.516 66.667 0.00 0.00 38.01 2.43
2677 8639 4.742649 TGGAGCGGACGAGCCTCT 62.743 66.667 0.00 0.00 38.01 3.69
2678 8640 4.200283 CTGGAGCGGACGAGCCTC 62.200 72.222 0.00 0.00 38.01 4.70
2679 8641 4.742649 TCTGGAGCGGACGAGCCT 62.743 66.667 0.00 0.00 38.01 4.58
2680 8642 4.200283 CTCTGGAGCGGACGAGCC 62.200 72.222 0.00 0.00 38.01 4.70
2681 8643 4.863925 GCTCTGGAGCGGACGAGC 62.864 72.222 6.84 5.59 45.29 5.03
2692 8654 3.465403 CCCTCCACTCCGCTCTGG 61.465 72.222 0.00 0.00 40.09 3.86
2693 8655 2.363018 TCCCTCCACTCCGCTCTG 60.363 66.667 0.00 0.00 0.00 3.35
2694 8656 2.043450 CTCCCTCCACTCCGCTCT 60.043 66.667 0.00 0.00 0.00 4.09
2695 8657 3.844090 GCTCCCTCCACTCCGCTC 61.844 72.222 0.00 0.00 0.00 5.03
2699 8661 3.151022 CTCCGCTCCCTCCACTCC 61.151 72.222 0.00 0.00 0.00 3.85
2700 8662 2.043852 TCTCCGCTCCCTCCACTC 60.044 66.667 0.00 0.00 0.00 3.51
2701 8663 2.043450 CTCTCCGCTCCCTCCACT 60.043 66.667 0.00 0.00 0.00 4.00
2702 8664 3.151022 CCTCTCCGCTCCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
2703 8665 3.347590 TCCTCTCCGCTCCCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
2704 8666 2.520741 CTCCTCTCCGCTCCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
2705 8667 3.223589 GCTCCTCTCCGCTCCCTC 61.224 72.222 0.00 0.00 0.00 4.30
2706 8668 4.851214 GGCTCCTCTCCGCTCCCT 62.851 72.222 0.00 0.00 0.00 4.20
2709 8671 3.141488 TTCGGCTCCTCTCCGCTC 61.141 66.667 0.00 0.00 46.05 5.03
2710 8672 3.453679 GTTCGGCTCCTCTCCGCT 61.454 66.667 0.00 0.00 46.05 5.52
2711 8673 4.856607 CGTTCGGCTCCTCTCCGC 62.857 72.222 0.00 0.00 46.05 5.54
2713 8675 4.856607 CGCGTTCGGCTCCTCTCC 62.857 72.222 0.00 0.00 40.44 3.71
2723 8685 2.025418 AACACTAAGGCCGCGTTCG 61.025 57.895 4.92 0.00 0.00 3.95
2724 8686 1.226030 ACAACACTAAGGCCGCGTTC 61.226 55.000 4.92 0.00 0.00 3.95
2725 8687 1.227734 ACAACACTAAGGCCGCGTT 60.228 52.632 4.92 3.47 0.00 4.84
2726 8688 1.959226 CACAACACTAAGGCCGCGT 60.959 57.895 4.92 0.00 0.00 6.01
2727 8689 0.668096 TACACAACACTAAGGCCGCG 60.668 55.000 0.00 0.00 0.00 6.46
2728 8690 1.076332 CTACACAACACTAAGGCCGC 58.924 55.000 0.00 0.00 0.00 6.53
2729 8691 2.066262 CACTACACAACACTAAGGCCG 58.934 52.381 0.00 0.00 0.00 6.13
2730 8692 1.804748 GCACTACACAACACTAAGGCC 59.195 52.381 0.00 0.00 0.00 5.19
2731 8693 2.489971 TGCACTACACAACACTAAGGC 58.510 47.619 0.00 0.00 0.00 4.35
2732 8694 4.152402 GTGATGCACTACACAACACTAAGG 59.848 45.833 13.26 0.00 37.05 2.69
2733 8695 4.749598 TGTGATGCACTACACAACACTAAG 59.250 41.667 16.94 0.00 42.72 2.18
2776 8738 1.078848 GCGGTCTCAGCAGGAACAT 60.079 57.895 0.00 0.00 34.19 2.71
2793 8755 6.961554 CAGAAAATAATGTAACGACAGAAGGC 59.038 38.462 0.00 0.00 39.50 4.35
2802 8764 8.840867 GCTCTTTCAACAGAAAATAATGTAACG 58.159 33.333 0.00 0.00 31.38 3.18
2817 8779 6.489603 TCATAAATAAGGGGCTCTTTCAACA 58.510 36.000 4.22 0.00 36.93 3.33
3014 8976 6.675987 CAAGACAATTCTTAAGCTTCAAGCT 58.324 36.000 5.91 5.91 46.84 3.74
3015 8977 5.344396 GCAAGACAATTCTTAAGCTTCAAGC 59.656 40.000 0.00 0.00 40.34 4.01
3016 8978 6.361748 GTGCAAGACAATTCTTAAGCTTCAAG 59.638 38.462 0.00 5.81 40.34 3.02
3017 8979 6.183360 TGTGCAAGACAATTCTTAAGCTTCAA 60.183 34.615 0.00 0.00 40.34 2.69
3018 8980 5.299028 TGTGCAAGACAATTCTTAAGCTTCA 59.701 36.000 0.00 0.00 40.34 3.02
3019 8981 5.762045 TGTGCAAGACAATTCTTAAGCTTC 58.238 37.500 0.00 0.00 40.34 3.86
3020 8982 5.772825 TGTGCAAGACAATTCTTAAGCTT 57.227 34.783 3.48 3.48 40.34 3.74
3021 8983 5.300286 ACTTGTGCAAGACAATTCTTAAGCT 59.700 36.000 17.62 0.00 43.78 3.74
3022 8984 5.400485 CACTTGTGCAAGACAATTCTTAAGC 59.600 40.000 17.62 0.00 43.78 3.09
3023 8985 6.634436 GTCACTTGTGCAAGACAATTCTTAAG 59.366 38.462 17.62 0.00 43.78 1.85
3024 8986 6.094742 TGTCACTTGTGCAAGACAATTCTTAA 59.905 34.615 17.62 0.00 43.78 1.85
3025 8987 5.588246 TGTCACTTGTGCAAGACAATTCTTA 59.412 36.000 17.62 0.00 43.78 2.10
3026 8988 4.398988 TGTCACTTGTGCAAGACAATTCTT 59.601 37.500 17.62 0.00 43.78 2.52
3027 8989 3.947196 TGTCACTTGTGCAAGACAATTCT 59.053 39.130 17.62 0.00 43.78 2.40
3028 8990 4.037690 GTGTCACTTGTGCAAGACAATTC 58.962 43.478 17.62 0.01 43.78 2.17
3029 8991 3.696051 AGTGTCACTTGTGCAAGACAATT 59.304 39.130 17.62 3.76 43.78 2.32
3030 8992 3.065786 CAGTGTCACTTGTGCAAGACAAT 59.934 43.478 17.62 9.50 43.78 2.71
3031 8993 2.419673 CAGTGTCACTTGTGCAAGACAA 59.580 45.455 17.62 0.00 42.55 3.18
3032 8994 2.009051 CAGTGTCACTTGTGCAAGACA 58.991 47.619 17.62 10.16 40.79 3.41
3033 8995 2.030946 GTCAGTGTCACTTGTGCAAGAC 59.969 50.000 17.62 2.28 40.79 3.01
3034 8996 2.279741 GTCAGTGTCACTTGTGCAAGA 58.720 47.619 17.62 0.00 40.79 3.02
3035 8997 1.331756 GGTCAGTGTCACTTGTGCAAG 59.668 52.381 1.67 10.09 43.79 4.01
3036 8998 1.339535 TGGTCAGTGTCACTTGTGCAA 60.340 47.619 1.67 0.00 0.00 4.08
3037 8999 0.251634 TGGTCAGTGTCACTTGTGCA 59.748 50.000 1.67 0.00 0.00 4.57
3038 9000 1.265095 CATGGTCAGTGTCACTTGTGC 59.735 52.381 1.67 0.00 0.00 4.57
3039 9001 2.564771 ACATGGTCAGTGTCACTTGTG 58.435 47.619 1.67 1.07 0.00 3.33
3040 9002 3.281727 AACATGGTCAGTGTCACTTGT 57.718 42.857 1.67 1.91 0.00 3.16
3041 9003 3.627123 TCAAACATGGTCAGTGTCACTTG 59.373 43.478 1.67 1.22 0.00 3.16
3042 9004 3.627577 GTCAAACATGGTCAGTGTCACTT 59.372 43.478 1.67 0.00 0.00 3.16
3043 9005 3.206150 GTCAAACATGGTCAGTGTCACT 58.794 45.455 0.00 0.00 0.00 3.41
3044 9006 2.942376 TGTCAAACATGGTCAGTGTCAC 59.058 45.455 0.00 0.00 0.00 3.67
3045 9007 3.274095 TGTCAAACATGGTCAGTGTCA 57.726 42.857 0.00 0.00 0.00 3.58
3046 9008 6.149308 TCAATATGTCAAACATGGTCAGTGTC 59.851 38.462 0.00 0.00 39.53 3.67
3047 9009 6.003326 TCAATATGTCAAACATGGTCAGTGT 58.997 36.000 0.00 0.00 39.53 3.55
3048 9010 6.499234 TCAATATGTCAAACATGGTCAGTG 57.501 37.500 0.00 0.00 39.53 3.66
3049 9011 5.124457 GCTCAATATGTCAAACATGGTCAGT 59.876 40.000 0.00 0.00 39.53 3.41
3050 9012 5.356190 AGCTCAATATGTCAAACATGGTCAG 59.644 40.000 0.00 0.00 39.53 3.51
3105 9067 6.237915 GGACAAGCAACAAGAATCAAAACTTG 60.238 38.462 0.00 0.00 45.85 3.16
3106 9068 5.812127 GGACAAGCAACAAGAATCAAAACTT 59.188 36.000 0.00 0.00 0.00 2.66
3116 9078 6.959639 AAATTAAGAGGACAAGCAACAAGA 57.040 33.333 0.00 0.00 0.00 3.02
3216 9184 0.037303 CATGCACAGGGTCTCAACCT 59.963 55.000 0.00 0.00 45.66 3.50
3217 9185 1.589716 GCATGCACAGGGTCTCAACC 61.590 60.000 14.21 0.00 45.65 3.77
3262 9230 3.511934 AGAAGAGAACAATCAGCTACGGT 59.488 43.478 0.00 0.00 0.00 4.83
3325 9293 7.918562 GCTGTTTTTCCAAACTCATACTTTGTA 59.081 33.333 0.00 0.00 42.61 2.41
3397 9365 3.433615 ACTGAACACATAGAAGAAAGCGC 59.566 43.478 0.00 0.00 0.00 5.92
3403 9372 8.342634 GCAAAAAGTAACTGAACACATAGAAGA 58.657 33.333 0.00 0.00 0.00 2.87
3654 9623 6.940867 AGTAATAACTCAAGTTCCCAGGAAAC 59.059 38.462 0.00 0.00 39.31 2.78
3820 9835 4.379374 AGCGTTTGTGTGTACGAATAAC 57.621 40.909 0.00 0.00 40.03 1.89
3925 9940 4.162320 CCACAGCCTTAAGAACTCCTGATA 59.838 45.833 3.36 0.00 0.00 2.15
3988 10003 2.959030 GCCAGACTGGGAAGAAAAAGTT 59.041 45.455 23.09 0.00 38.19 2.66
3991 10006 2.586425 CAGCCAGACTGGGAAGAAAAA 58.414 47.619 23.09 0.00 43.19 1.94
4013 10028 6.272318 TGGAAAACATGCTTAAGAAGTGTTG 58.728 36.000 6.67 0.00 33.67 3.33
4032 10047 5.692115 TGATAACTGGCTCAGTATGGAAA 57.308 39.130 8.07 0.00 44.62 3.13
4086 10103 2.422597 TCGAACTGACGCAATGGAAAT 58.577 42.857 0.00 0.00 0.00 2.17
4100 10117 9.988350 CAATAAGCATAAACAAACTATCGAACT 57.012 29.630 0.00 0.00 0.00 3.01
4101 10118 9.982291 TCAATAAGCATAAACAAACTATCGAAC 57.018 29.630 0.00 0.00 0.00 3.95
4126 10143 7.201530 CGGTAGAACCTGTGTTTCAGAATAATC 60.202 40.741 0.00 0.00 46.27 1.75
4149 10166 0.321996 GTTCTTCTGGAGCTTCCGGT 59.678 55.000 0.00 0.00 43.49 5.28
4152 10169 4.545208 AACTAGTTCTTCTGGAGCTTCC 57.455 45.455 1.12 0.00 36.84 3.46
4168 10185 1.734465 CCAAGCAAGCTCCGAAACTAG 59.266 52.381 0.00 0.00 0.00 2.57
4176 10193 1.452108 ATACCGCCAAGCAAGCTCC 60.452 57.895 0.00 0.00 0.00 4.70
4179 10196 1.532868 CTATCATACCGCCAAGCAAGC 59.467 52.381 0.00 0.00 0.00 4.01
4196 10213 4.536489 ACAAGGGGAAGCTACAGAAACTAT 59.464 41.667 0.00 0.00 0.00 2.12
4205 10222 2.871453 TGGAAAACAAGGGGAAGCTAC 58.129 47.619 0.00 0.00 0.00 3.58
4226 10243 8.420222 TCTGATGGTTCAAAAATTGCTCTTAAA 58.580 29.630 0.00 0.00 0.00 1.52
4227 10244 7.950512 TCTGATGGTTCAAAAATTGCTCTTAA 58.049 30.769 0.00 0.00 0.00 1.85
4231 10248 6.647895 ACAATCTGATGGTTCAAAAATTGCTC 59.352 34.615 0.00 0.00 0.00 4.26
4232 10249 6.527423 ACAATCTGATGGTTCAAAAATTGCT 58.473 32.000 0.00 0.00 0.00 3.91
4241 10258 6.491062 AGATGAACAAACAATCTGATGGTTCA 59.509 34.615 10.72 14.54 33.71 3.18
4242 10259 6.917533 AGATGAACAAACAATCTGATGGTTC 58.082 36.000 10.72 10.33 0.00 3.62
4248 10265 6.455647 ACGTAGAGATGAACAAACAATCTGA 58.544 36.000 0.00 0.00 0.00 3.27
4258 10275 7.153217 TCAGTTTCATACGTAGAGATGAACA 57.847 36.000 10.28 1.84 40.77 3.18
4270 10287 6.169419 TGATGCTTTCTTCAGTTTCATACG 57.831 37.500 0.00 0.00 0.00 3.06
4292 10311 7.220300 CAGTTTAGCGAACTACTACAAGGTATG 59.780 40.741 7.98 0.00 46.75 2.39
4296 10315 5.467705 ACAGTTTAGCGAACTACTACAAGG 58.532 41.667 7.98 0.00 46.75 3.61
4374 10393 5.200483 TGTGTTTCTGGGATCTCAAACTTT 58.800 37.500 10.70 0.00 31.29 2.66
4438 10552 5.453567 AAACAAGGCTCAAGTATTTGGTC 57.546 39.130 0.00 0.00 34.97 4.02
4487 10601 2.238646 TGCCACGTTCCTTGATATCCTT 59.761 45.455 0.00 0.00 0.00 3.36
4579 10693 6.276847 CAACTACAGGGAATCTTAGTAGCAG 58.723 44.000 0.00 0.00 36.51 4.24
4637 10761 9.405587 GTCGAAAATAAAACCAATCTTCAATCA 57.594 29.630 0.00 0.00 0.00 2.57
4638 10762 8.575454 CGTCGAAAATAAAACCAATCTTCAATC 58.425 33.333 0.00 0.00 0.00 2.67
4741 10867 2.569059 CATACCAGATGCTCACCCAAG 58.431 52.381 0.00 0.00 0.00 3.61
4767 10893 7.920151 CACTCCAAACATGATTTAGTCAAACAA 59.080 33.333 0.00 0.00 40.97 2.83
4771 10897 5.769662 AGCACTCCAAACATGATTTAGTCAA 59.230 36.000 0.00 0.00 40.97 3.18
4821 10947 7.562135 ACTTTACACAAGACAGGTAGAAGAAA 58.438 34.615 0.00 0.00 0.00 2.52
4822 10948 7.120923 ACTTTACACAAGACAGGTAGAAGAA 57.879 36.000 0.00 0.00 0.00 2.52
4823 10949 6.726490 ACTTTACACAAGACAGGTAGAAGA 57.274 37.500 0.00 0.00 0.00 2.87
4854 10981 1.669795 GCAAACAAAGATTGGGGCGAG 60.670 52.381 0.00 0.00 34.12 5.03
4865 10992 6.201806 TCAAATGGTTAATTCGGCAAACAAAG 59.798 34.615 0.00 0.00 0.00 2.77
4868 10995 4.985409 GTCAAATGGTTAATTCGGCAAACA 59.015 37.500 0.00 0.00 0.00 2.83
4875 11002 6.454318 CGAGTCAGAGTCAAATGGTTAATTCG 60.454 42.308 6.07 0.00 0.00 3.34
4896 11023 1.468395 CCAAAACGGTTTTGCACGAGT 60.468 47.619 31.19 2.99 46.58 4.18
4908 11035 3.551250 GGGAAATGTGTGTACCAAAACGG 60.551 47.826 0.00 0.00 42.50 4.44
4931 11058 7.606456 ACCATACGTCATCTTCACAAATAGTTT 59.394 33.333 0.00 0.00 0.00 2.66
4933 11060 6.640518 ACCATACGTCATCTTCACAAATAGT 58.359 36.000 0.00 0.00 0.00 2.12
4948 11075 6.127952 GGGAAGTCATAGATCTACCATACGTC 60.128 46.154 4.10 8.37 0.00 4.34
4956 11083 7.584122 TGTTACAGGGAAGTCATAGATCTAC 57.416 40.000 4.10 0.00 0.00 2.59
4957 11084 7.839705 AGTTGTTACAGGGAAGTCATAGATCTA 59.160 37.037 4.57 4.57 0.00 1.98
4958 11085 6.670027 AGTTGTTACAGGGAAGTCATAGATCT 59.330 38.462 0.00 0.00 0.00 2.75
4959 11086 6.879400 AGTTGTTACAGGGAAGTCATAGATC 58.121 40.000 0.00 0.00 0.00 2.75
4960 11087 6.875972 AGTTGTTACAGGGAAGTCATAGAT 57.124 37.500 0.00 0.00 0.00 1.98
4961 11088 6.464222 CAAGTTGTTACAGGGAAGTCATAGA 58.536 40.000 0.00 0.00 0.00 1.98
4962 11089 5.643777 CCAAGTTGTTACAGGGAAGTCATAG 59.356 44.000 1.45 0.00 0.00 2.23
4963 11090 5.308497 TCCAAGTTGTTACAGGGAAGTCATA 59.692 40.000 1.45 0.00 0.00 2.15
4964 11091 4.104102 TCCAAGTTGTTACAGGGAAGTCAT 59.896 41.667 1.45 0.00 0.00 3.06
4965 11092 3.456644 TCCAAGTTGTTACAGGGAAGTCA 59.543 43.478 1.45 0.00 0.00 3.41
4966 11093 4.065789 CTCCAAGTTGTTACAGGGAAGTC 58.934 47.826 1.45 0.00 31.12 3.01
4971 11098 8.840321 CATTATTATCTCCAAGTTGTTACAGGG 58.160 37.037 1.45 0.00 0.00 4.45
5010 11137 4.743057 TGGTGGATCAGAGTGTTATCTG 57.257 45.455 0.00 0.00 46.70 2.90
5018 11145 3.054802 GGACTGAAATGGTGGATCAGAGT 60.055 47.826 8.84 0.00 42.48 3.24
5036 11163 4.679373 AATAATCAGCGAGATGTGGACT 57.321 40.909 0.00 0.00 36.96 3.85
5068 11196 9.743581 AACTCCCTCCGAAAGTAATTTAATTTA 57.256 29.630 2.13 0.00 0.00 1.40
5072 11200 7.720515 TCAAAACTCCCTCCGAAAGTAATTTAA 59.279 33.333 0.00 0.00 0.00 1.52
5073 11201 7.173735 GTCAAAACTCCCTCCGAAAGTAATTTA 59.826 37.037 0.00 0.00 0.00 1.40
5074 11202 6.016527 GTCAAAACTCCCTCCGAAAGTAATTT 60.017 38.462 0.00 0.00 0.00 1.82
5075 11203 5.472478 GTCAAAACTCCCTCCGAAAGTAATT 59.528 40.000 0.00 0.00 0.00 1.40
5076 11204 5.001874 GTCAAAACTCCCTCCGAAAGTAAT 58.998 41.667 0.00 0.00 0.00 1.89
5077 11205 4.102054 AGTCAAAACTCCCTCCGAAAGTAA 59.898 41.667 0.00 0.00 0.00 2.24
5153 11281 1.066908 GATCCCTCTTCTGCTCGTGAG 59.933 57.143 0.00 0.00 0.00 3.51
5165 11299 3.618351 CTGCTTTGATGTTGATCCCTCT 58.382 45.455 0.00 0.00 0.00 3.69
5196 11331 2.398554 CGCCATTGTTGGACCTCCG 61.399 63.158 0.00 0.00 46.92 4.63
5202 11337 0.322456 CCTTCTCCGCCATTGTTGGA 60.322 55.000 0.00 0.00 46.92 3.53
5217 11352 2.230660 CCAAACACCTTCACTCCCTTC 58.769 52.381 0.00 0.00 0.00 3.46
5218 11353 1.754201 GCCAAACACCTTCACTCCCTT 60.754 52.381 0.00 0.00 0.00 3.95
5219 11354 0.178990 GCCAAACACCTTCACTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
5220 11355 0.467290 TGCCAAACACCTTCACTCCC 60.467 55.000 0.00 0.00 0.00 4.30
5221 11356 1.270550 CATGCCAAACACCTTCACTCC 59.729 52.381 0.00 0.00 0.00 3.85
5222 11357 1.956477 ACATGCCAAACACCTTCACTC 59.044 47.619 0.00 0.00 0.00 3.51
5223 11358 1.682854 CACATGCCAAACACCTTCACT 59.317 47.619 0.00 0.00 0.00 3.41
5224 11359 1.269726 CCACATGCCAAACACCTTCAC 60.270 52.381 0.00 0.00 0.00 3.18
5225 11360 1.039068 CCACATGCCAAACACCTTCA 58.961 50.000 0.00 0.00 0.00 3.02
5278 11413 4.821589 GACGCCCTTCAGCCGGAG 62.822 72.222 5.05 0.00 0.00 4.63
5283 11418 3.766691 TACCCGACGCCCTTCAGC 61.767 66.667 0.00 0.00 0.00 4.26
5284 11419 2.183555 GTACCCGACGCCCTTCAG 59.816 66.667 0.00 0.00 0.00 3.02
5301 11436 1.343147 GTCCTCGTCGACGTACTCG 59.657 63.158 34.40 18.85 44.44 4.18
5302 11437 0.739112 AGGTCCTCGTCGACGTACTC 60.739 60.000 34.40 22.58 40.80 2.59
5304 11439 1.712663 GAGGTCCTCGTCGACGTAC 59.287 63.158 34.40 27.81 40.80 3.67
5305 11440 4.192000 GAGGTCCTCGTCGACGTA 57.808 61.111 34.40 21.01 40.80 3.57
5314 11449 2.125350 CTTGCTGGCGAGGTCCTC 60.125 66.667 9.05 9.05 0.00 3.71
5315 11450 2.604686 TCTTGCTGGCGAGGTCCT 60.605 61.111 9.62 0.00 0.00 3.85
5316 11451 2.125350 CTCTTGCTGGCGAGGTCC 60.125 66.667 9.62 0.00 0.00 4.46
5317 11452 2.817396 GCTCTTGCTGGCGAGGTC 60.817 66.667 9.62 0.00 36.03 3.85
5348 11483 4.572571 TGGTCACCGGGTTGTGGC 62.573 66.667 6.32 0.00 40.12 5.01
5349 11484 1.896660 CTTGGTCACCGGGTTGTGG 60.897 63.158 6.32 0.00 36.87 4.17
5350 11485 0.464735 TTCTTGGTCACCGGGTTGTG 60.465 55.000 6.32 0.00 37.59 3.33
5351 11486 0.179029 CTTCTTGGTCACCGGGTTGT 60.179 55.000 6.32 0.00 0.00 3.32
5352 11487 0.889186 CCTTCTTGGTCACCGGGTTG 60.889 60.000 6.32 0.00 0.00 3.77
5353 11488 1.454539 CCTTCTTGGTCACCGGGTT 59.545 57.895 6.32 0.00 0.00 4.11
5354 11489 3.157680 CCTTCTTGGTCACCGGGT 58.842 61.111 6.32 0.00 0.00 5.28
5400 12654 1.300233 GATGGTGGACTCGGCGATC 60.300 63.158 11.27 10.31 0.00 3.69
5496 12750 1.002011 GAACCTGGCCCAGAACCTC 60.002 63.158 13.74 0.00 32.44 3.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.