Multiple sequence alignment - TraesCS5D01G253700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G253700 chr5D 100.000 7622 0 0 1 7622 360538840 360546461 0.000000e+00 14076.0
1 TraesCS5D01G253700 chr5D 93.811 307 9 3 5360 5665 503229403 503229106 3.240000e-123 453.0
2 TraesCS5D01G253700 chr5D 93.811 307 9 3 5360 5665 503239184 503238887 3.240000e-123 453.0
3 TraesCS5D01G253700 chr5A 91.527 2691 125 51 408 3017 461486593 461489261 0.000000e+00 3611.0
4 TraesCS5D01G253700 chr5A 94.073 2126 83 16 3567 5667 461489250 461491357 0.000000e+00 3188.0
5 TraesCS5D01G253700 chr5A 94.274 1921 89 16 5667 7585 461491418 461493319 0.000000e+00 2918.0
6 TraesCS5D01G253700 chr5B 94.237 2117 84 14 3567 5665 425880567 425882663 0.000000e+00 3199.0
7 TraesCS5D01G253700 chr5B 93.011 1860 94 19 5669 7506 425882727 425884572 0.000000e+00 2682.0
8 TraesCS5D01G253700 chr5B 92.837 1745 71 15 957 2655 425878385 425880121 0.000000e+00 2481.0
9 TraesCS5D01G253700 chr5B 95.604 364 16 0 2654 3017 425880215 425880578 1.100000e-162 584.0
10 TraesCS5D01G253700 chr5B 95.902 244 9 1 5667 5909 533060369 533060126 1.990000e-105 394.0
11 TraesCS5D01G253700 chr5B 78.855 227 26 15 1 224 425877101 425877308 4.800000e-27 134.0
12 TraesCS5D01G253700 chr5B 100.000 32 0 0 7591 7622 425884776 425884807 8.260000e-05 60.2
13 TraesCS5D01G253700 chr4A 90.939 1501 91 15 1644 3144 688559169 688557714 0.000000e+00 1977.0
14 TraesCS5D01G253700 chr4A 90.806 1501 93 15 1644 3144 688542409 688540954 0.000000e+00 1965.0
15 TraesCS5D01G253700 chr4A 88.889 54 5 1 5121 5174 514922167 514922219 1.780000e-06 65.8
16 TraesCS5D01G253700 chr3B 93.103 1189 67 9 1957 3144 35052099 35053273 0.000000e+00 1727.0
17 TraesCS5D01G253700 chr3B 93.103 1189 67 9 1957 3144 35136099 35137273 0.000000e+00 1727.0
18 TraesCS5D01G253700 chr3B 92.361 288 18 2 1644 1931 35051817 35052100 2.560000e-109 407.0
19 TraesCS5D01G253700 chr3B 92.361 288 18 2 1644 1931 35135817 35136100 2.560000e-109 407.0
20 TraesCS5D01G253700 chr3B 96.311 244 8 1 5667 5909 92156687 92156930 4.280000e-107 399.0
21 TraesCS5D01G253700 chr1A 91.849 1190 57 13 1955 3144 94129551 94128402 0.000000e+00 1624.0
22 TraesCS5D01G253700 chr1A 90.411 292 20 3 1644 1931 94130009 94129722 2.010000e-100 377.0
23 TraesCS5D01G253700 chr2A 91.848 552 41 4 3017 3567 515951641 515952189 0.000000e+00 767.0
24 TraesCS5D01G253700 chr2A 94.137 307 8 3 5360 5665 726899993 726899696 6.970000e-125 459.0
25 TraesCS5D01G253700 chr2D 91.636 550 43 3 3018 3567 380416529 380417075 0.000000e+00 758.0
26 TraesCS5D01G253700 chr2D 91.209 546 46 2 3017 3562 388833662 388834205 0.000000e+00 741.0
27 TraesCS5D01G253700 chr4D 91.155 554 43 3 3017 3566 346468190 346467639 0.000000e+00 747.0
28 TraesCS5D01G253700 chr4D 95.902 244 9 1 5667 5909 123625679 123625436 1.990000e-105 394.0
29 TraesCS5D01G253700 chr4D 95.902 244 9 1 5667 5909 135019225 135019468 1.990000e-105 394.0
30 TraesCS5D01G253700 chr1B 90.597 553 41 8 3017 3567 271895363 271894820 0.000000e+00 723.0
31 TraesCS5D01G253700 chr1B 96.311 244 8 1 5667 5909 683720378 683720135 4.280000e-107 399.0
32 TraesCS5D01G253700 chr7A 90.200 551 53 1 3017 3567 109351954 109351405 0.000000e+00 717.0
33 TraesCS5D01G253700 chr7A 96.104 77 3 0 6371 6447 332416536 332416612 8.030000e-25 126.0
34 TraesCS5D01G253700 chr6D 90.200 551 53 1 3017 3567 158356782 158356233 0.000000e+00 717.0
35 TraesCS5D01G253700 chr6D 94.137 307 8 3 5360 5665 389250532 389250235 6.970000e-125 459.0
36 TraesCS5D01G253700 chr6D 93.811 307 9 3 5360 5665 389251077 389250780 3.240000e-123 453.0
37 TraesCS5D01G253700 chr6D 93.811 307 9 3 5360 5665 389255327 389255030 3.240000e-123 453.0
38 TraesCS5D01G253700 chr6A 90.200 551 53 1 3017 3567 410901516 410902065 0.000000e+00 717.0
39 TraesCS5D01G253700 chr3D 90.217 552 51 3 3017 3567 365531878 365531329 0.000000e+00 717.0
40 TraesCS5D01G253700 chrUn 89.060 521 26 8 1644 2164 397021311 397020822 1.090000e-172 617.0
41 TraesCS5D01G253700 chrUn 89.060 521 26 8 1644 2164 397112301 397111812 1.090000e-172 617.0
42 TraesCS5D01G253700 chrUn 93.540 387 23 2 2355 2741 480759663 480759279 6.630000e-160 575.0
43 TraesCS5D01G253700 chrUn 95.902 244 9 1 5667 5909 40099627 40099870 1.990000e-105 394.0
44 TraesCS5D01G253700 chr7D 93.631 314 8 5 5353 5665 231556574 231556876 6.970000e-125 459.0
45 TraesCS5D01G253700 chr7B 93.631 314 8 5 5353 5665 663101262 663101564 6.970000e-125 459.0
46 TraesCS5D01G253700 chr7B 95.902 244 9 1 5667 5909 743044085 743044328 1.990000e-105 394.0
47 TraesCS5D01G253700 chr3A 94.137 307 8 3 5360 5665 650016353 650016650 6.970000e-125 459.0
48 TraesCS5D01G253700 chr3A 84.490 245 25 7 2550 2789 750396079 750395843 5.950000e-56 230.0
49 TraesCS5D01G253700 chr2B 92.994 314 10 5 5353 5665 474895843 474896145 1.510000e-121 448.0
50 TraesCS5D01G253700 chr6B 96.104 77 3 0 6371 6447 52023242 52023318 8.030000e-25 126.0
51 TraesCS5D01G253700 chr4B 87.611 113 6 3 5360 5472 463097837 463097733 2.890000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G253700 chr5D 360538840 360546461 7621 False 14076.000000 14076 100.000000 1 7622 1 chr5D.!!$F1 7621
1 TraesCS5D01G253700 chr5A 461486593 461493319 6726 False 3239.000000 3611 93.291333 408 7585 3 chr5A.!!$F1 7177
2 TraesCS5D01G253700 chr5B 425877101 425884807 7706 False 1523.366667 3199 92.424000 1 7622 6 chr5B.!!$F1 7621
3 TraesCS5D01G253700 chr4A 688557714 688559169 1455 True 1977.000000 1977 90.939000 1644 3144 1 chr4A.!!$R2 1500
4 TraesCS5D01G253700 chr4A 688540954 688542409 1455 True 1965.000000 1965 90.806000 1644 3144 1 chr4A.!!$R1 1500
5 TraesCS5D01G253700 chr3B 35051817 35053273 1456 False 1067.000000 1727 92.732000 1644 3144 2 chr3B.!!$F2 1500
6 TraesCS5D01G253700 chr3B 35135817 35137273 1456 False 1067.000000 1727 92.732000 1644 3144 2 chr3B.!!$F3 1500
7 TraesCS5D01G253700 chr1A 94128402 94130009 1607 True 1000.500000 1624 91.130000 1644 3144 2 chr1A.!!$R1 1500
8 TraesCS5D01G253700 chr2A 515951641 515952189 548 False 767.000000 767 91.848000 3017 3567 1 chr2A.!!$F1 550
9 TraesCS5D01G253700 chr2D 380416529 380417075 546 False 758.000000 758 91.636000 3018 3567 1 chr2D.!!$F1 549
10 TraesCS5D01G253700 chr2D 388833662 388834205 543 False 741.000000 741 91.209000 3017 3562 1 chr2D.!!$F2 545
11 TraesCS5D01G253700 chr4D 346467639 346468190 551 True 747.000000 747 91.155000 3017 3566 1 chr4D.!!$R2 549
12 TraesCS5D01G253700 chr1B 271894820 271895363 543 True 723.000000 723 90.597000 3017 3567 1 chr1B.!!$R1 550
13 TraesCS5D01G253700 chr7A 109351405 109351954 549 True 717.000000 717 90.200000 3017 3567 1 chr7A.!!$R1 550
14 TraesCS5D01G253700 chr6D 158356233 158356782 549 True 717.000000 717 90.200000 3017 3567 1 chr6D.!!$R1 550
15 TraesCS5D01G253700 chr6D 389250235 389255327 5092 True 455.000000 459 93.919667 5360 5665 3 chr6D.!!$R2 305
16 TraesCS5D01G253700 chr6A 410901516 410902065 549 False 717.000000 717 90.200000 3017 3567 1 chr6A.!!$F1 550
17 TraesCS5D01G253700 chr3D 365531329 365531878 549 True 717.000000 717 90.217000 3017 3567 1 chr3D.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 273 0.037326 TGCCATGAGAACCACGAGAC 60.037 55.0 0.00 0.00 0.00 3.36 F
397 406 0.097150 GCCGGAACAAAGAATCGCTC 59.903 55.0 5.05 0.00 0.00 5.03 F
1318 1794 0.032952 CACCGACGACTTCCTCCAAA 59.967 55.0 0.00 0.00 0.00 3.28 F
1319 1795 0.317479 ACCGACGACTTCCTCCAAAG 59.683 55.0 0.00 0.00 0.00 2.77 F
1713 2210 0.319813 GTGGGTTGAGGCAATGCAAC 60.320 55.0 7.79 2.77 42.67 4.17 F
3358 4147 0.690762 TTGGTGCTACCCCAACTCTC 59.309 55.0 3.33 0.00 37.50 3.20 F
3571 4360 0.311790 CACAAAGAACGCCAGTGCAT 59.688 50.0 0.00 0.00 37.32 3.96 F
4659 5450 0.322008 GGGAGCTTGAACCTGGAGTG 60.322 60.0 0.00 0.00 0.00 3.51 F
6117 11778 0.592637 CTCGCAGTCATGGTTTGCAA 59.407 50.0 14.35 0.00 37.69 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1792 0.465097 CATGAGCGGCTCCATCCTTT 60.465 55.000 26.00 0.93 0.00 3.11 R
1842 2343 1.063792 TGGGTGGCATATCACAGCAAT 60.064 47.619 0.00 0.00 39.27 3.56 R
3252 4041 0.821517 TCCAGTGCATAACGGATCGT 59.178 50.000 0.00 0.00 43.97 3.73 R
3254 4043 1.202580 AGCTCCAGTGCATAACGGATC 60.203 52.381 0.00 0.00 33.12 3.36 R
3412 4201 1.086067 CGGAGATGCGCATGTTGAGT 61.086 55.000 30.76 1.03 0.00 3.41 R
4549 5340 1.081892 AGCTGTTGAATGTAGCTGCG 58.918 50.000 0.00 0.00 45.40 5.18 R
5398 6207 0.182537 ATCCGGAATGATTGGGCGAA 59.817 50.000 9.01 0.00 0.00 4.70 R
6273 11935 0.040204 CACCCCCAGAAGGAGCATTT 59.960 55.000 0.00 0.00 38.24 2.32 R
7543 13311 1.003718 GACCTGTTCGGACAAGGGG 60.004 63.158 14.47 7.93 34.85 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.304794 GGGACTTCTCGAGATCATAACCG 60.305 52.174 17.44 0.60 0.00 4.44
33 34 3.945921 ACTTCTCGAGATCATAACCGTGA 59.054 43.478 17.44 0.00 0.00 4.35
42 43 6.744993 CGAGATCATAACCGTGAAGATAGATG 59.255 42.308 0.00 0.00 0.00 2.90
43 44 7.361286 CGAGATCATAACCGTGAAGATAGATGA 60.361 40.741 0.00 0.00 0.00 2.92
44 45 7.825681 AGATCATAACCGTGAAGATAGATGAG 58.174 38.462 0.00 0.00 0.00 2.90
45 46 7.667635 AGATCATAACCGTGAAGATAGATGAGA 59.332 37.037 0.00 0.00 0.00 3.27
47 48 8.183104 TCATAACCGTGAAGATAGATGAGATT 57.817 34.615 0.00 0.00 0.00 2.40
48 49 8.642432 TCATAACCGTGAAGATAGATGAGATTT 58.358 33.333 0.00 0.00 0.00 2.17
50 51 6.471233 ACCGTGAAGATAGATGAGATTTCA 57.529 37.500 0.00 0.00 37.81 2.69
51 52 6.878317 ACCGTGAAGATAGATGAGATTTCAA 58.122 36.000 0.00 0.00 36.78 2.69
52 53 6.983307 ACCGTGAAGATAGATGAGATTTCAAG 59.017 38.462 0.00 0.00 36.78 3.02
53 54 7.147828 ACCGTGAAGATAGATGAGATTTCAAGA 60.148 37.037 0.00 0.00 36.78 3.02
54 55 7.168972 CCGTGAAGATAGATGAGATTTCAAGAC 59.831 40.741 0.00 0.00 36.78 3.01
55 56 7.704047 CGTGAAGATAGATGAGATTTCAAGACA 59.296 37.037 0.00 0.00 36.78 3.41
56 57 9.033481 GTGAAGATAGATGAGATTTCAAGACAG 57.967 37.037 0.00 0.00 36.78 3.51
57 58 8.975295 TGAAGATAGATGAGATTTCAAGACAGA 58.025 33.333 0.00 0.00 36.78 3.41
58 59 9.985730 GAAGATAGATGAGATTTCAAGACAGAT 57.014 33.333 0.00 0.00 36.78 2.90
63 64 7.725251 AGATGAGATTTCAAGACAGATAGACC 58.275 38.462 0.00 0.00 36.78 3.85
64 65 7.564660 AGATGAGATTTCAAGACAGATAGACCT 59.435 37.037 0.00 0.00 36.78 3.85
65 66 8.774546 ATGAGATTTCAAGACAGATAGACCTA 57.225 34.615 0.00 0.00 36.78 3.08
66 67 8.001881 TGAGATTTCAAGACAGATAGACCTAC 57.998 38.462 0.00 0.00 0.00 3.18
67 68 7.068839 TGAGATTTCAAGACAGATAGACCTACC 59.931 40.741 0.00 0.00 0.00 3.18
68 69 6.897966 AGATTTCAAGACAGATAGACCTACCA 59.102 38.462 0.00 0.00 0.00 3.25
69 70 6.531503 TTTCAAGACAGATAGACCTACCAG 57.468 41.667 0.00 0.00 0.00 4.00
81 82 3.267031 AGACCTACCAGCAAAATAGGCTT 59.733 43.478 0.00 0.00 40.23 4.35
83 84 2.689983 CCTACCAGCAAAATAGGCTTGG 59.310 50.000 0.00 0.00 40.23 3.61
86 87 1.404583 CCAGCAAAATAGGCTTGGCAC 60.405 52.381 0.00 0.00 40.23 5.01
88 89 1.547372 AGCAAAATAGGCTTGGCACTG 59.453 47.619 0.00 0.00 38.81 3.66
91 92 1.315257 AAATAGGCTTGGCACTGGCG 61.315 55.000 0.00 0.00 42.47 5.69
92 93 3.704231 ATAGGCTTGGCACTGGCGG 62.704 63.158 0.00 0.00 42.47 6.13
102 109 2.063979 CACTGGCGGGGACATCCTA 61.064 63.158 0.00 0.00 35.95 2.94
107 114 2.822399 CGGGGACATCCTACTGGC 59.178 66.667 0.00 0.00 35.95 4.85
108 115 1.762460 CGGGGACATCCTACTGGCT 60.762 63.158 0.00 0.00 35.95 4.75
136 143 2.888594 CGACCTGGATTTGTATCGTGT 58.111 47.619 0.00 0.00 0.00 4.49
137 144 2.603110 CGACCTGGATTTGTATCGTGTG 59.397 50.000 0.00 0.00 0.00 3.82
144 151 5.515184 TGGATTTGTATCGTGTGTTTTGTG 58.485 37.500 0.00 0.00 0.00 3.33
152 159 3.263261 TCGTGTGTTTTGTGTTAGCTGA 58.737 40.909 0.00 0.00 0.00 4.26
153 160 3.062909 TCGTGTGTTTTGTGTTAGCTGAC 59.937 43.478 0.78 0.78 0.00 3.51
156 163 5.499047 GTGTGTTTTGTGTTAGCTGACTAC 58.501 41.667 10.29 7.14 0.00 2.73
157 164 5.293569 GTGTGTTTTGTGTTAGCTGACTACT 59.706 40.000 10.29 0.00 0.00 2.57
158 165 6.477688 GTGTGTTTTGTGTTAGCTGACTACTA 59.522 38.462 10.29 1.48 0.00 1.82
159 166 7.170998 GTGTGTTTTGTGTTAGCTGACTACTAT 59.829 37.037 10.29 0.00 0.00 2.12
160 167 7.384115 TGTGTTTTGTGTTAGCTGACTACTATC 59.616 37.037 10.29 0.00 0.00 2.08
161 168 6.872020 TGTTTTGTGTTAGCTGACTACTATCC 59.128 38.462 10.29 0.00 0.00 2.59
203 211 1.213537 CGATGGCAGCAAGGTTTGG 59.786 57.895 2.73 0.00 0.00 3.28
214 222 2.167075 GCAAGGTTTGGATGAAGGATGG 59.833 50.000 0.00 0.00 0.00 3.51
224 232 1.909700 TGAAGGATGGAAAGCACACC 58.090 50.000 0.00 0.00 0.00 4.16
225 233 0.804989 GAAGGATGGAAAGCACACCG 59.195 55.000 0.00 0.00 0.00 4.94
226 234 1.244019 AAGGATGGAAAGCACACCGC 61.244 55.000 0.00 0.00 42.91 5.68
227 235 2.700773 GGATGGAAAGCACACCGCC 61.701 63.158 0.00 0.00 44.04 6.13
228 236 3.039202 GATGGAAAGCACACCGCCG 62.039 63.158 0.00 0.00 44.04 6.46
231 239 4.389576 GAAAGCACACCGCCGCAG 62.390 66.667 0.00 0.00 44.04 5.18
257 265 3.317608 CAACGCATGCCATGAGAAC 57.682 52.632 15.58 0.00 34.01 3.01
258 266 0.179156 CAACGCATGCCATGAGAACC 60.179 55.000 15.58 0.00 34.01 3.62
259 267 0.608856 AACGCATGCCATGAGAACCA 60.609 50.000 15.58 0.00 34.01 3.67
260 268 1.308069 ACGCATGCCATGAGAACCAC 61.308 55.000 15.58 0.00 34.01 4.16
261 269 1.430632 GCATGCCATGAGAACCACG 59.569 57.895 9.33 0.00 0.00 4.94
262 270 1.026182 GCATGCCATGAGAACCACGA 61.026 55.000 9.33 0.00 0.00 4.35
263 271 1.012086 CATGCCATGAGAACCACGAG 58.988 55.000 0.00 0.00 0.00 4.18
264 272 0.904649 ATGCCATGAGAACCACGAGA 59.095 50.000 0.00 0.00 0.00 4.04
265 273 0.037326 TGCCATGAGAACCACGAGAC 60.037 55.000 0.00 0.00 0.00 3.36
268 276 0.608130 CATGAGAACCACGAGACCCA 59.392 55.000 0.00 0.00 0.00 4.51
272 280 0.608640 AGAACCACGAGACCCATCAC 59.391 55.000 0.00 0.00 0.00 3.06
274 282 0.321671 AACCACGAGACCCATCACAG 59.678 55.000 0.00 0.00 0.00 3.66
290 298 4.602340 TCACAGAACCAAACTAGAGGTC 57.398 45.455 0.00 0.00 37.07 3.85
301 309 0.179051 CTAGAGGTCTACGACGGCCT 60.179 60.000 0.00 1.64 32.65 5.19
302 310 0.254178 TAGAGGTCTACGACGGCCTT 59.746 55.000 0.00 0.00 32.65 4.35
303 311 0.611340 AGAGGTCTACGACGGCCTTT 60.611 55.000 0.00 0.00 32.65 3.11
304 312 0.179142 GAGGTCTACGACGGCCTTTC 60.179 60.000 0.00 0.00 32.65 2.62
305 313 0.896940 AGGTCTACGACGGCCTTTCA 60.897 55.000 0.00 0.00 32.65 2.69
307 315 0.243095 GTCTACGACGGCCTTTCAGT 59.757 55.000 0.00 2.92 0.00 3.41
311 319 1.289066 CGACGGCCTTTCAGTCTCA 59.711 57.895 0.00 0.00 37.68 3.27
312 320 0.319555 CGACGGCCTTTCAGTCTCAA 60.320 55.000 0.00 0.00 37.68 3.02
313 321 1.433534 GACGGCCTTTCAGTCTCAAG 58.566 55.000 0.00 0.00 37.01 3.02
316 325 1.814793 GGCCTTTCAGTCTCAAGGTC 58.185 55.000 0.00 3.44 41.63 3.85
319 328 3.070748 GCCTTTCAGTCTCAAGGTCTTC 58.929 50.000 8.55 0.00 41.63 2.87
326 335 4.081142 TCAGTCTCAAGGTCTTCAACAACA 60.081 41.667 0.00 0.00 0.00 3.33
331 340 5.070981 TCTCAAGGTCTTCAACAACAGAGAT 59.929 40.000 0.00 0.00 0.00 2.75
351 360 1.063327 CAAAACCACACGCAGCGAA 59.937 52.632 24.65 0.00 0.00 4.70
352 361 0.524392 CAAAACCACACGCAGCGAAA 60.524 50.000 24.65 0.00 0.00 3.46
353 362 0.248458 AAAACCACACGCAGCGAAAG 60.248 50.000 24.65 13.28 0.00 2.62
354 363 1.373590 AAACCACACGCAGCGAAAGT 61.374 50.000 24.65 13.98 0.00 2.66
355 364 2.047151 AACCACACGCAGCGAAAGTG 62.047 55.000 24.65 23.80 41.28 3.16
356 365 2.243957 CCACACGCAGCGAAAGTGA 61.244 57.895 28.34 0.00 39.04 3.41
357 366 1.641140 CACACGCAGCGAAAGTGAA 59.359 52.632 24.65 0.00 39.04 3.18
358 367 0.235665 CACACGCAGCGAAAGTGAAT 59.764 50.000 24.65 0.00 39.04 2.57
359 368 0.512952 ACACGCAGCGAAAGTGAATC 59.487 50.000 24.65 0.00 39.04 2.52
360 369 0.517132 CACGCAGCGAAAGTGAATCG 60.517 55.000 24.65 0.00 42.99 3.34
369 378 3.236816 CGAAAGTGAATCGCAATTGCTT 58.763 40.909 26.86 16.06 34.60 3.91
373 382 2.094545 AGTGAATCGCAATTGCTTTCCC 60.095 45.455 26.86 19.21 39.32 3.97
378 387 0.526096 CGCAATTGCTTTCCCCATCG 60.526 55.000 26.86 4.64 39.32 3.84
379 388 0.807275 GCAATTGCTTTCCCCATCGC 60.807 55.000 23.21 0.00 38.21 4.58
385 394 2.045731 TTTCCCCATCGCCGGAAC 60.046 61.111 5.05 0.00 37.88 3.62
393 402 1.064060 CCATCGCCGGAACAAAGAATC 59.936 52.381 5.05 0.00 0.00 2.52
397 406 0.097150 GCCGGAACAAAGAATCGCTC 59.903 55.000 5.05 0.00 0.00 5.03
398 407 1.726853 CCGGAACAAAGAATCGCTCT 58.273 50.000 0.00 0.00 35.13 4.09
399 408 1.661112 CCGGAACAAAGAATCGCTCTC 59.339 52.381 0.00 0.00 31.02 3.20
400 409 2.611518 CGGAACAAAGAATCGCTCTCT 58.388 47.619 0.00 0.00 31.02 3.10
401 410 2.600867 CGGAACAAAGAATCGCTCTCTC 59.399 50.000 0.00 0.00 31.02 3.20
402 411 3.674682 CGGAACAAAGAATCGCTCTCTCT 60.675 47.826 0.00 0.00 31.02 3.10
403 412 3.862845 GGAACAAAGAATCGCTCTCTCTC 59.137 47.826 0.00 0.00 31.02 3.20
404 413 4.489810 GAACAAAGAATCGCTCTCTCTCA 58.510 43.478 0.00 0.00 31.02 3.27
405 414 4.527509 ACAAAGAATCGCTCTCTCTCAA 57.472 40.909 0.00 0.00 31.02 3.02
406 415 4.887748 ACAAAGAATCGCTCTCTCTCAAA 58.112 39.130 0.00 0.00 31.02 2.69
407 416 5.300752 ACAAAGAATCGCTCTCTCTCAAAA 58.699 37.500 0.00 0.00 31.02 2.44
408 417 5.760253 ACAAAGAATCGCTCTCTCTCAAAAA 59.240 36.000 0.00 0.00 31.02 1.94
437 446 3.844090 GCTCTCTCCGTCAGCCCC 61.844 72.222 0.00 0.00 0.00 5.80
439 448 3.670629 CTCTCTCCGTCAGCCCCCT 62.671 68.421 0.00 0.00 0.00 4.79
440 449 2.279073 CTCTCCGTCAGCCCCCTA 59.721 66.667 0.00 0.00 0.00 3.53
443 452 1.830408 CTCCGTCAGCCCCCTAGAG 60.830 68.421 0.00 0.00 0.00 2.43
448 457 0.971447 GTCAGCCCCCTAGAGAACGT 60.971 60.000 0.00 0.00 0.00 3.99
455 464 0.100861 CCCTAGAGAACGTCGCCTTC 59.899 60.000 0.00 0.00 0.00 3.46
456 465 0.100861 CCTAGAGAACGTCGCCTTCC 59.899 60.000 0.00 0.00 0.00 3.46
457 466 0.248134 CTAGAGAACGTCGCCTTCCG 60.248 60.000 0.00 0.00 38.61 4.30
458 467 0.957395 TAGAGAACGTCGCCTTCCGT 60.957 55.000 0.00 0.00 39.32 4.69
472 545 1.452145 TTCCGTGGCAGAAAGCAACC 61.452 55.000 0.00 0.00 44.80 3.77
473 546 2.252260 CGTGGCAGAAAGCAACCG 59.748 61.111 0.00 0.00 44.80 4.44
495 568 4.673580 CGATTTCCTTCCAGAAATGCACAG 60.674 45.833 4.34 0.00 44.52 3.66
519 592 2.125952 GCTGCACGGCCCAATTTC 60.126 61.111 0.00 0.00 0.00 2.17
544 618 4.389992 TCATCAGAGAAGAAAACACGCATC 59.610 41.667 0.00 0.00 0.00 3.91
546 620 1.461127 AGAGAAGAAAACACGCATCGC 59.539 47.619 0.00 0.00 0.00 4.58
561 635 1.376609 ATCGCATTCCCGTTTCCAGC 61.377 55.000 0.00 0.00 0.00 4.85
611 715 2.168621 CGCAACACTTCTGTCGCG 59.831 61.111 0.00 0.00 36.47 5.87
640 753 0.103208 CCCTCACGGAAAGATCCTCG 59.897 60.000 0.00 0.00 44.17 4.63
644 757 0.170561 CACGGAAAGATCCTCGTCGT 59.829 55.000 0.00 0.00 44.17 4.34
737 865 1.284982 CCTTTCTCTCACACGTGCCG 61.285 60.000 17.22 7.42 0.00 5.69
799 942 4.365111 TGACCTGTGGGCCATGGC 62.365 66.667 29.47 29.47 41.06 4.40
801 944 4.371417 ACCTGTGGGCCATGGCTG 62.371 66.667 34.70 18.95 41.60 4.85
886 1039 1.557443 GACGCCAACAACTCCTCGTG 61.557 60.000 0.00 0.00 0.00 4.35
887 1040 2.317609 CGCCAACAACTCCTCGTGG 61.318 63.158 0.00 0.00 0.00 4.94
888 1041 1.070786 GCCAACAACTCCTCGTGGA 59.929 57.895 6.00 6.00 40.69 4.02
890 1043 0.393077 CCAACAACTCCTCGTGGACT 59.607 55.000 1.10 0.00 37.46 3.85
891 1044 1.605712 CCAACAACTCCTCGTGGACTC 60.606 57.143 1.10 0.00 37.46 3.36
893 1046 0.178958 ACAACTCCTCGTGGACTCCT 60.179 55.000 1.10 0.00 37.46 3.69
912 1076 2.556782 CCTCCCCAAAACTAAACCCTCC 60.557 54.545 0.00 0.00 0.00 4.30
913 1077 1.430075 TCCCCAAAACTAAACCCTCCC 59.570 52.381 0.00 0.00 0.00 4.30
915 1079 1.551560 CCCAAAACTAAACCCTCCCCC 60.552 57.143 0.00 0.00 0.00 5.40
916 1080 1.148236 CCAAAACTAAACCCTCCCCCA 59.852 52.381 0.00 0.00 0.00 4.96
917 1081 2.244695 CAAAACTAAACCCTCCCCCAC 58.755 52.381 0.00 0.00 0.00 4.61
919 1083 1.144612 AACTAAACCCTCCCCCACCC 61.145 60.000 0.00 0.00 0.00 4.61
920 1084 1.230182 CTAAACCCTCCCCCACCCT 60.230 63.158 0.00 0.00 0.00 4.34
921 1085 1.230050 TAAACCCTCCCCCACCCTC 60.230 63.158 0.00 0.00 0.00 4.30
922 1086 1.768231 TAAACCCTCCCCCACCCTCT 61.768 60.000 0.00 0.00 0.00 3.69
923 1087 3.581141 AACCCTCCCCCACCCTCTC 62.581 68.421 0.00 0.00 0.00 3.20
924 1088 4.825679 CCCTCCCCCACCCTCTCC 62.826 77.778 0.00 0.00 0.00 3.71
925 1089 4.825679 CCTCCCCCACCCTCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
926 1090 3.700350 CTCCCCCACCCTCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
927 1091 3.695825 TCCCCCACCCTCTCCCTC 61.696 72.222 0.00 0.00 0.00 4.30
928 1092 4.825679 CCCCCACCCTCTCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
1316 1792 0.824595 TTCACCGACGACTTCCTCCA 60.825 55.000 0.00 0.00 0.00 3.86
1317 1793 0.824595 TCACCGACGACTTCCTCCAA 60.825 55.000 0.00 0.00 0.00 3.53
1318 1794 0.032952 CACCGACGACTTCCTCCAAA 59.967 55.000 0.00 0.00 0.00 3.28
1319 1795 0.317479 ACCGACGACTTCCTCCAAAG 59.683 55.000 0.00 0.00 0.00 2.77
1637 2130 1.068333 GCGAGTTTGTGATGCAATGGT 60.068 47.619 0.00 0.00 36.89 3.55
1638 2131 2.161410 GCGAGTTTGTGATGCAATGGTA 59.839 45.455 0.00 0.00 36.89 3.25
1639 2132 3.747193 CGAGTTTGTGATGCAATGGTAC 58.253 45.455 0.00 0.00 36.89 3.34
1713 2210 0.319813 GTGGGTTGAGGCAATGCAAC 60.320 55.000 7.79 2.77 42.67 4.17
1775 2276 2.420372 GCTTTAGTTGTCTAGCAAGGCC 59.580 50.000 0.00 0.00 37.83 5.19
1842 2343 6.952773 ACAGGTTTTTGCTGTACAATTCTA 57.047 33.333 0.00 0.00 38.31 2.10
1859 2360 5.954296 ATTCTATTGCTGTGATATGCCAC 57.046 39.130 0.00 0.00 37.55 5.01
1893 2394 8.677148 AAGTCTTGAGTATGTTTGTGTGTAAT 57.323 30.769 0.00 0.00 0.00 1.89
1894 2395 9.772973 AAGTCTTGAGTATGTTTGTGTGTAATA 57.227 29.630 0.00 0.00 0.00 0.98
1895 2396 9.772973 AGTCTTGAGTATGTTTGTGTGTAATAA 57.227 29.630 0.00 0.00 0.00 1.40
1921 2422 6.238566 GCATGCTCTGTCATTGTAATACACAT 60.239 38.462 11.37 0.00 36.90 3.21
1935 2439 1.593196 ACACATAACGCAAGCACACT 58.407 45.000 0.00 0.00 45.62 3.55
2156 2833 8.317679 CAAATACTCTCTATAGGAATTGGAGGG 58.682 40.741 0.00 0.00 0.00 4.30
2231 2908 3.604875 TTGAAGGTATTGTCCCGAGTC 57.395 47.619 0.00 0.00 0.00 3.36
2234 2911 2.249309 AGGTATTGTCCCGAGTCCTT 57.751 50.000 0.00 0.00 0.00 3.36
2474 3160 6.551227 ACATTTCCTTATTATGCCCCTCTTTC 59.449 38.462 0.00 0.00 0.00 2.62
2477 3164 3.140144 CCTTATTATGCCCCTCTTTCCCA 59.860 47.826 0.00 0.00 0.00 4.37
2677 3459 8.918658 CATATATTGAAATGGCAAATGCTGTAC 58.081 33.333 5.25 0.00 41.70 2.90
2767 3549 2.746472 GCCATCCTATCAGGGTTGTGAC 60.746 54.545 0.00 0.00 35.59 3.67
2771 3553 3.638860 TCCTATCAGGGTTGTGACGTAT 58.361 45.455 0.00 0.00 35.59 3.06
2981 3763 9.740239 AGCATTCATGTTGATAATACAATTGAC 57.260 29.630 13.59 0.00 30.51 3.18
3168 3957 6.064717 GGCTAGTTCTTTGGTGATATTCCAT 58.935 40.000 0.00 0.00 34.75 3.41
3184 3973 4.662468 TTCCATTCCTTCAGATCTCTCG 57.338 45.455 0.00 0.00 0.00 4.04
3219 4008 3.497763 CCCATGTCAAGTTTGGTCTACCA 60.498 47.826 0.00 0.00 45.94 3.25
3246 4035 5.181009 CCTCTCTTTGACATTATCAGCACA 58.819 41.667 0.00 0.00 38.99 4.57
3252 4041 8.389779 TCTTTGACATTATCAGCACACTTTAA 57.610 30.769 0.00 0.00 38.99 1.52
3254 4043 6.164408 TGACATTATCAGCACACTTTAACG 57.836 37.500 0.00 0.00 31.91 3.18
3260 4049 2.066262 CAGCACACTTTAACGATCCGT 58.934 47.619 0.00 0.00 43.97 4.69
3358 4147 0.690762 TTGGTGCTACCCCAACTCTC 59.309 55.000 3.33 0.00 37.50 3.20
3361 4150 1.267121 GTGCTACCCCAACTCTCTCA 58.733 55.000 0.00 0.00 0.00 3.27
3365 4154 2.237392 GCTACCCCAACTCTCTCATGTT 59.763 50.000 0.00 0.00 0.00 2.71
3398 4187 1.068541 GGACCCAATCGTTTCTTGTGC 60.069 52.381 0.00 0.00 0.00 4.57
3412 4201 1.301293 TGTGCGGCCACATATCCAA 59.699 52.632 2.24 0.00 46.51 3.53
3493 4282 3.254060 ACACTCAGCGTCATACAACATC 58.746 45.455 0.00 0.00 0.00 3.06
3518 4307 0.520404 TCGAATCGCCGTCCTATAGC 59.480 55.000 0.00 0.00 0.00 2.97
3567 4356 1.670811 CTTGTCACAAAGAACGCCAGT 59.329 47.619 0.00 0.00 0.00 4.00
3568 4357 1.013596 TGTCACAAAGAACGCCAGTG 58.986 50.000 0.00 0.00 0.00 3.66
3569 4358 0.317020 GTCACAAAGAACGCCAGTGC 60.317 55.000 0.00 0.00 0.00 4.40
3570 4359 0.746204 TCACAAAGAACGCCAGTGCA 60.746 50.000 0.00 0.00 37.32 4.57
3571 4360 0.311790 CACAAAGAACGCCAGTGCAT 59.688 50.000 0.00 0.00 37.32 3.96
3572 4361 1.535028 CACAAAGAACGCCAGTGCATA 59.465 47.619 0.00 0.00 37.32 3.14
3573 4362 2.031245 CACAAAGAACGCCAGTGCATAA 60.031 45.455 0.00 0.00 37.32 1.90
3574 4363 2.226437 ACAAAGAACGCCAGTGCATAAG 59.774 45.455 0.00 0.00 37.32 1.73
3575 4364 2.472695 AAGAACGCCAGTGCATAAGA 57.527 45.000 0.00 0.00 37.32 2.10
3576 4365 1.726853 AGAACGCCAGTGCATAAGAC 58.273 50.000 0.00 0.00 37.32 3.01
3577 4366 1.001974 AGAACGCCAGTGCATAAGACA 59.998 47.619 0.00 0.00 37.32 3.41
3611 4400 4.759516 TTTAAGACGGAAACAGATTGCC 57.240 40.909 0.00 0.00 0.00 4.52
3626 4417 2.008242 TTGCCCACAGCCTTATTGTT 57.992 45.000 0.00 0.00 42.71 2.83
3628 4419 3.380471 TGCCCACAGCCTTATTGTTAT 57.620 42.857 0.00 0.00 42.71 1.89
3633 4424 5.449999 GCCCACAGCCTTATTGTTATACAAC 60.450 44.000 0.00 0.00 36.78 3.32
3635 4426 7.051623 CCCACAGCCTTATTGTTATACAACTA 58.948 38.462 0.00 0.00 41.40 2.24
3815 4606 1.089920 CTGCATTACAGGTCAGTGCC 58.910 55.000 0.00 0.00 43.19 5.01
3816 4607 0.692476 TGCATTACAGGTCAGTGCCT 59.308 50.000 0.75 0.75 39.99 4.75
3817 4608 1.073763 TGCATTACAGGTCAGTGCCTT 59.926 47.619 3.64 0.43 36.58 4.35
3818 4609 1.470098 GCATTACAGGTCAGTGCCTTG 59.530 52.381 3.64 0.00 36.58 3.61
3819 4610 2.783135 CATTACAGGTCAGTGCCTTGT 58.217 47.619 3.64 0.00 36.58 3.16
3835 4626 2.038033 CCTTGTCTTCCACTTTCCCGTA 59.962 50.000 0.00 0.00 0.00 4.02
3883 4674 6.764308 AATTCCAGATTAACATGAGTGGTG 57.236 37.500 0.00 0.00 0.00 4.17
3888 4679 5.335897 CCAGATTAACATGAGTGGTGTTTGG 60.336 44.000 0.00 0.00 40.13 3.28
3961 4752 1.208293 GATGAGGAGACCAGGAACACC 59.792 57.143 0.00 0.00 0.00 4.16
3971 4762 0.323629 CAGGAACACCGTGGTATGGT 59.676 55.000 3.03 0.00 38.21 3.55
3972 4763 1.551430 CAGGAACACCGTGGTATGGTA 59.449 52.381 3.03 0.00 34.66 3.25
3976 4767 4.011698 GGAACACCGTGGTATGGTATTTT 58.988 43.478 3.03 0.00 34.66 1.82
3977 4768 4.460034 GGAACACCGTGGTATGGTATTTTT 59.540 41.667 3.03 0.00 34.66 1.94
4018 4809 8.899887 TTGGTCATATGATATGACTATGGAGA 57.100 34.615 32.57 16.83 45.60 3.71
4126 4917 3.694566 GGAATAGGCAGTAAGGTTTGTGG 59.305 47.826 0.00 0.00 0.00 4.17
4128 4919 0.539669 AGGCAGTAAGGTTTGTGGCC 60.540 55.000 0.00 0.00 40.18 5.36
4131 4922 1.534729 CAGTAAGGTTTGTGGCCTCC 58.465 55.000 3.32 0.00 34.81 4.30
4134 4925 2.160205 GTAAGGTTTGTGGCCTCCTTC 58.840 52.381 3.32 2.21 40.26 3.46
4145 4936 3.254903 GTGGCCTCCTTCGTTACAATTTT 59.745 43.478 3.32 0.00 0.00 1.82
4169 4960 6.037786 TGTCGAGGTTTCTGATTTCAGTAT 57.962 37.500 7.42 0.00 44.12 2.12
4195 4986 4.842380 TGCTTACTAGTGACTTTACCCCTT 59.158 41.667 5.39 0.00 0.00 3.95
4290 5081 7.056635 GTCATGGAATCTCTTGGGAAAGAATA 58.943 38.462 0.00 0.00 0.00 1.75
4291 5082 7.012799 GTCATGGAATCTCTTGGGAAAGAATAC 59.987 40.741 0.00 0.00 0.00 1.89
4332 5123 5.279556 GGGTATGTATCCTTGCTTCTCTACC 60.280 48.000 0.00 0.00 0.00 3.18
4442 5233 3.621558 GCAGGTTAATCAAGGGCTAACT 58.378 45.455 0.00 0.00 0.00 2.24
4549 5340 7.571428 GCAACTTTTACTGAACTGTCTATGGTC 60.571 40.741 0.00 0.00 0.00 4.02
4659 5450 0.322008 GGGAGCTTGAACCTGGAGTG 60.322 60.000 0.00 0.00 0.00 3.51
4702 5493 2.365293 GGGATGTTGCAGGTTTGTCTTT 59.635 45.455 0.00 0.00 0.00 2.52
4950 5744 5.957774 TGCATATCATCAGCCTGGTACTATA 59.042 40.000 0.00 0.00 0.00 1.31
4965 5759 7.177568 CCTGGTACTATACTCAAGATGCACTAT 59.822 40.741 0.00 0.00 0.00 2.12
4996 5790 7.067494 GCTCAGGATCCATAACTTATTGTTGTT 59.933 37.037 15.82 0.00 39.55 2.83
5096 5890 1.972872 AAAGGGTGCTGACTGTTCTG 58.027 50.000 0.00 0.00 0.00 3.02
5136 5930 7.358263 TGAAATCTCTTACTCCCTCTGTATCT 58.642 38.462 0.00 0.00 0.00 1.98
5137 5931 7.504238 TGAAATCTCTTACTCCCTCTGTATCTC 59.496 40.741 0.00 0.00 0.00 2.75
5373 6182 2.582052 TGAACAGGCGGACTTGAAAAT 58.418 42.857 0.00 0.00 0.00 1.82
5442 10493 2.355108 GCTTGCATCCTCTGTCTTACCA 60.355 50.000 0.00 0.00 0.00 3.25
5511 10562 6.511121 CGTCATTGTTTCTTCTCCGAGAAAAA 60.511 38.462 11.94 11.59 44.63 1.94
5544 10595 1.159905 TAGGCCTTCCACCTCCACA 59.840 57.895 12.58 0.00 38.81 4.17
5546 10597 2.829384 GGCCTTCCACCTCCACACA 61.829 63.158 0.00 0.00 0.00 3.72
5619 10670 2.348888 CGTAGGAGTCTGGGCCGTT 61.349 63.158 0.00 0.00 0.00 4.44
5629 10680 1.831652 CTGGGCCGTTTCTCAGTCCT 61.832 60.000 0.00 0.00 0.00 3.85
5650 11246 2.194859 AGTGTGGCTGATCATCCTCTT 58.805 47.619 16.28 3.84 0.00 2.85
5667 11263 2.564947 CTCTTGGACCAGCTACTGAACT 59.435 50.000 0.00 0.00 32.44 3.01
5672 11329 3.901844 TGGACCAGCTACTGAACTACTTT 59.098 43.478 0.00 0.00 32.44 2.66
5737 11394 2.798499 CGTCCACGAGACAGTCAAAAGT 60.798 50.000 2.66 0.00 46.69 2.66
5749 11406 8.012957 AGACAGTCAAAAGTAAGAGAGAAAGA 57.987 34.615 2.66 0.00 0.00 2.52
5873 11531 1.878088 CATCCCATTGCATTCCTCTCG 59.122 52.381 0.00 0.00 0.00 4.04
6095 11756 3.824443 CCCCACTCGGTTAAATTTGACTT 59.176 43.478 12.29 0.00 0.00 3.01
6117 11778 0.592637 CTCGCAGTCATGGTTTGCAA 59.407 50.000 14.35 0.00 37.69 4.08
6120 11781 1.987770 CGCAGTCATGGTTTGCAATTC 59.012 47.619 0.00 0.00 37.69 2.17
6146 11807 6.126652 ACCCTATGACAAGCATCTCTTATTGT 60.127 38.462 0.00 0.00 38.44 2.71
6245 11907 6.563422 TGAAATATTGTTGACTTATGCCTGC 58.437 36.000 0.00 0.00 0.00 4.85
6273 11935 9.542462 CTTTGACTTCCGTTGATTAATCCTATA 57.458 33.333 12.90 0.00 0.00 1.31
6292 11954 0.040204 AAATGCTCCTTCTGGGGGTG 59.960 55.000 0.00 0.00 38.03 4.61
6453 12115 5.649602 TTTTTGCCAACTTCTATTTTGCG 57.350 34.783 0.00 0.00 0.00 4.85
6674 12336 2.225167 TGTAAAATTGGGTGGGTCTCCC 60.225 50.000 0.00 0.00 45.71 4.30
6880 12555 2.015736 AGCTCCATTCGACACACATC 57.984 50.000 0.00 0.00 0.00 3.06
6902 12577 6.067263 TCTGGTAGTACAATTGTTTGCAAC 57.933 37.500 17.78 8.37 37.44 4.17
6958 12633 8.318412 GGAATAAAAATATCCAAACAAGTGGGT 58.682 33.333 0.00 0.00 39.34 4.51
6976 12651 4.037923 GTGGGTATATTCATTTGGTGCAGG 59.962 45.833 0.00 0.00 0.00 4.85
6978 12653 4.037923 GGGTATATTCATTTGGTGCAGGTG 59.962 45.833 0.00 0.00 0.00 4.00
6991 12666 3.568007 GGTGCAGGTGATTCACAAAGTTA 59.432 43.478 18.09 0.00 35.86 2.24
6994 12669 6.072175 GGTGCAGGTGATTCACAAAGTTAATA 60.072 38.462 18.09 0.00 35.86 0.98
7077 12752 1.439365 GCTTCAGTTGCTTCACGCG 60.439 57.895 3.53 3.53 43.27 6.01
7085 12760 2.202479 GCTTCACGCGGCCAAATC 60.202 61.111 12.47 0.00 0.00 2.17
7109 12784 3.879998 TGGCCTATTTACATTCGAGCAA 58.120 40.909 3.32 0.00 0.00 3.91
7156 12831 2.293122 CCGAGCCTTCAATCAACAAACA 59.707 45.455 0.00 0.00 0.00 2.83
7188 12863 2.947243 GCCTCAATCCTTCAAGCATCCA 60.947 50.000 0.00 0.00 0.00 3.41
7243 12918 6.264518 TCAATCGGCAGTATATCAACTACTCA 59.735 38.462 0.00 0.00 0.00 3.41
7248 12923 6.294231 CGGCAGTATATCAACTACTCAGACAT 60.294 42.308 0.00 0.00 0.00 3.06
7249 12924 7.437748 GGCAGTATATCAACTACTCAGACATT 58.562 38.462 0.00 0.00 0.00 2.71
7382 13059 3.300765 GCTGTGCCTGCTGCCTTT 61.301 61.111 0.00 0.00 40.16 3.11
7543 13311 3.740832 GCAATTTTTAAGGGTGTGACTGC 59.259 43.478 0.00 0.00 0.00 4.40
7574 13342 1.345715 ACAGGTCCCAATCCCCGATC 61.346 60.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.939201 TGTCTTGAAATCTCATCTATCTTCAC 57.061 34.615 0.00 0.00 0.00 3.18
42 43 7.068839 TGGTAGGTCTATCTGTCTTGAAATCTC 59.931 40.741 0.00 0.00 0.00 2.75
43 44 6.897966 TGGTAGGTCTATCTGTCTTGAAATCT 59.102 38.462 0.00 0.00 0.00 2.40
44 45 7.113658 TGGTAGGTCTATCTGTCTTGAAATC 57.886 40.000 0.00 0.00 0.00 2.17
45 46 6.407525 GCTGGTAGGTCTATCTGTCTTGAAAT 60.408 42.308 0.00 0.00 0.00 2.17
47 48 4.402793 GCTGGTAGGTCTATCTGTCTTGAA 59.597 45.833 0.00 0.00 0.00 2.69
48 49 3.954904 GCTGGTAGGTCTATCTGTCTTGA 59.045 47.826 0.00 0.00 0.00 3.02
50 51 3.982516 TGCTGGTAGGTCTATCTGTCTT 58.017 45.455 0.00 0.00 0.00 3.01
51 52 3.671740 TGCTGGTAGGTCTATCTGTCT 57.328 47.619 0.00 0.00 0.00 3.41
52 53 4.737855 TTTGCTGGTAGGTCTATCTGTC 57.262 45.455 0.00 0.00 0.00 3.51
53 54 5.700402 ATTTTGCTGGTAGGTCTATCTGT 57.300 39.130 0.00 0.00 0.00 3.41
54 55 6.226787 CCTATTTTGCTGGTAGGTCTATCTG 58.773 44.000 0.00 0.00 32.20 2.90
55 56 5.221742 GCCTATTTTGCTGGTAGGTCTATCT 60.222 44.000 0.00 0.00 37.80 1.98
56 57 4.998033 GCCTATTTTGCTGGTAGGTCTATC 59.002 45.833 0.00 0.00 37.80 2.08
57 58 4.660771 AGCCTATTTTGCTGGTAGGTCTAT 59.339 41.667 0.00 0.00 37.76 1.98
58 59 4.037927 AGCCTATTTTGCTGGTAGGTCTA 58.962 43.478 0.00 0.00 37.76 2.59
59 60 2.846827 AGCCTATTTTGCTGGTAGGTCT 59.153 45.455 0.00 0.00 37.76 3.85
60 61 3.283259 AGCCTATTTTGCTGGTAGGTC 57.717 47.619 0.00 0.00 37.76 3.85
61 62 3.356290 CAAGCCTATTTTGCTGGTAGGT 58.644 45.455 0.00 0.00 39.48 3.08
62 63 2.689983 CCAAGCCTATTTTGCTGGTAGG 59.310 50.000 0.00 0.00 39.48 3.18
63 64 2.099756 GCCAAGCCTATTTTGCTGGTAG 59.900 50.000 0.00 0.00 39.48 3.18
64 65 2.099405 GCCAAGCCTATTTTGCTGGTA 58.901 47.619 0.00 0.00 39.48 3.25
65 66 0.897621 GCCAAGCCTATTTTGCTGGT 59.102 50.000 0.00 0.00 39.48 4.00
66 67 0.896923 TGCCAAGCCTATTTTGCTGG 59.103 50.000 0.00 0.00 39.48 4.85
67 68 1.547372 AGTGCCAAGCCTATTTTGCTG 59.453 47.619 0.00 0.00 39.48 4.41
68 69 1.547372 CAGTGCCAAGCCTATTTTGCT 59.453 47.619 0.00 0.00 41.89 3.91
69 70 1.404583 CCAGTGCCAAGCCTATTTTGC 60.405 52.381 0.00 0.00 0.00 3.68
86 87 1.762460 AGTAGGATGTCCCCGCCAG 60.762 63.158 0.00 0.00 36.42 4.85
88 89 2.808206 CCAGTAGGATGTCCCCGCC 61.808 68.421 0.00 0.00 36.89 6.13
91 92 1.832912 CAGCCAGTAGGATGTCCCC 59.167 63.158 0.00 0.00 46.22 4.81
98 105 1.599047 GCTCTTGCAGCCAGTAGGA 59.401 57.895 0.00 0.00 43.17 2.94
102 109 2.358003 GTCGCTCTTGCAGCCAGT 60.358 61.111 0.00 0.00 46.74 4.00
107 114 0.392193 AATCCAGGTCGCTCTTGCAG 60.392 55.000 0.00 0.00 39.64 4.41
108 115 0.036732 AAATCCAGGTCGCTCTTGCA 59.963 50.000 0.00 0.00 39.64 4.08
117 124 3.596214 ACACACGATACAAATCCAGGTC 58.404 45.455 0.00 0.00 0.00 3.85
119 126 5.153513 CAAAACACACGATACAAATCCAGG 58.846 41.667 0.00 0.00 0.00 4.45
121 128 5.066634 ACACAAAACACACGATACAAATCCA 59.933 36.000 0.00 0.00 0.00 3.41
136 143 6.872020 GGATAGTAGTCAGCTAACACAAAACA 59.128 38.462 0.00 0.00 0.00 2.83
137 144 6.872020 TGGATAGTAGTCAGCTAACACAAAAC 59.128 38.462 0.00 0.00 0.00 2.43
185 192 1.213537 CCAAACCTTGCTGCCATCG 59.786 57.895 0.00 0.00 0.00 3.84
188 195 0.178967 TCATCCAAACCTTGCTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
203 211 2.424956 GGTGTGCTTTCCATCCTTCATC 59.575 50.000 0.00 0.00 0.00 2.92
214 222 4.389576 CTGCGGCGGTGTGCTTTC 62.390 66.667 9.78 0.00 45.43 2.62
239 247 0.179156 GGTTCTCATGGCATGCGTTG 60.179 55.000 22.56 11.72 0.00 4.10
240 248 0.608856 TGGTTCTCATGGCATGCGTT 60.609 50.000 22.56 0.00 0.00 4.84
241 249 1.002257 TGGTTCTCATGGCATGCGT 60.002 52.632 22.56 0.00 0.00 5.24
242 250 1.430632 GTGGTTCTCATGGCATGCG 59.569 57.895 22.56 16.89 0.00 4.73
243 251 1.026182 TCGTGGTTCTCATGGCATGC 61.026 55.000 22.56 9.90 33.31 4.06
244 252 1.012086 CTCGTGGTTCTCATGGCATG 58.988 55.000 21.42 21.42 33.31 4.06
245 253 0.904649 TCTCGTGGTTCTCATGGCAT 59.095 50.000 0.00 0.00 33.31 4.40
246 254 0.037326 GTCTCGTGGTTCTCATGGCA 60.037 55.000 0.00 0.00 33.31 4.92
247 255 0.741221 GGTCTCGTGGTTCTCATGGC 60.741 60.000 0.00 0.00 33.31 4.40
248 256 0.108138 GGGTCTCGTGGTTCTCATGG 60.108 60.000 0.00 0.00 33.31 3.66
249 257 0.608130 TGGGTCTCGTGGTTCTCATG 59.392 55.000 0.00 0.00 0.00 3.07
250 258 1.482593 GATGGGTCTCGTGGTTCTCAT 59.517 52.381 0.00 0.00 0.00 2.90
251 259 0.895530 GATGGGTCTCGTGGTTCTCA 59.104 55.000 0.00 0.00 0.00 3.27
252 260 0.895530 TGATGGGTCTCGTGGTTCTC 59.104 55.000 0.00 0.00 0.00 2.87
253 261 0.608640 GTGATGGGTCTCGTGGTTCT 59.391 55.000 0.00 0.00 0.00 3.01
254 262 0.320374 TGTGATGGGTCTCGTGGTTC 59.680 55.000 0.00 0.00 0.00 3.62
255 263 0.321671 CTGTGATGGGTCTCGTGGTT 59.678 55.000 0.00 0.00 0.00 3.67
256 264 0.541998 TCTGTGATGGGTCTCGTGGT 60.542 55.000 0.00 0.00 0.00 4.16
257 265 0.608130 TTCTGTGATGGGTCTCGTGG 59.392 55.000 0.00 0.00 0.00 4.94
258 266 1.673033 GGTTCTGTGATGGGTCTCGTG 60.673 57.143 0.00 0.00 0.00 4.35
259 267 0.608640 GGTTCTGTGATGGGTCTCGT 59.391 55.000 0.00 0.00 0.00 4.18
260 268 0.608130 TGGTTCTGTGATGGGTCTCG 59.392 55.000 0.00 0.00 0.00 4.04
261 269 2.814336 GTTTGGTTCTGTGATGGGTCTC 59.186 50.000 0.00 0.00 0.00 3.36
262 270 2.443255 AGTTTGGTTCTGTGATGGGTCT 59.557 45.455 0.00 0.00 0.00 3.85
263 271 2.863809 AGTTTGGTTCTGTGATGGGTC 58.136 47.619 0.00 0.00 0.00 4.46
264 272 3.650942 TCTAGTTTGGTTCTGTGATGGGT 59.349 43.478 0.00 0.00 0.00 4.51
265 273 4.256920 CTCTAGTTTGGTTCTGTGATGGG 58.743 47.826 0.00 0.00 0.00 4.00
268 276 4.841246 AGACCTCTAGTTTGGTTCTGTGAT 59.159 41.667 6.36 0.00 36.59 3.06
272 280 4.458295 TCGTAGACCTCTAGTTTGGTTCTG 59.542 45.833 6.36 0.35 36.59 3.02
290 298 3.031660 GACTGAAAGGCCGTCGTAG 57.968 57.895 0.00 0.00 33.95 3.51
301 309 5.097742 TGTTGAAGACCTTGAGACTGAAA 57.902 39.130 0.00 0.00 0.00 2.69
302 310 4.753516 TGTTGAAGACCTTGAGACTGAA 57.246 40.909 0.00 0.00 0.00 3.02
303 311 4.081142 TGTTGTTGAAGACCTTGAGACTGA 60.081 41.667 0.00 0.00 0.00 3.41
304 312 4.191544 TGTTGTTGAAGACCTTGAGACTG 58.808 43.478 0.00 0.00 0.00 3.51
305 313 4.162320 TCTGTTGTTGAAGACCTTGAGACT 59.838 41.667 0.00 0.00 0.00 3.24
307 315 4.405680 TCTCTGTTGTTGAAGACCTTGAGA 59.594 41.667 0.00 0.00 0.00 3.27
311 319 3.817647 GCATCTCTGTTGTTGAAGACCTT 59.182 43.478 0.00 0.00 0.00 3.50
312 320 3.181451 TGCATCTCTGTTGTTGAAGACCT 60.181 43.478 0.00 0.00 0.00 3.85
313 321 3.141398 TGCATCTCTGTTGTTGAAGACC 58.859 45.455 0.00 0.00 0.00 3.85
316 325 4.741676 GGTTTTGCATCTCTGTTGTTGAAG 59.258 41.667 0.00 0.00 0.00 3.02
319 328 3.798337 GTGGTTTTGCATCTCTGTTGTTG 59.202 43.478 0.00 0.00 0.00 3.33
326 335 0.593128 GCGTGTGGTTTTGCATCTCT 59.407 50.000 0.00 0.00 0.00 3.10
331 340 2.103934 GCTGCGTGTGGTTTTGCA 59.896 55.556 0.00 0.00 35.75 4.08
360 369 0.807275 GCGATGGGGAAAGCAATTGC 60.807 55.000 23.05 23.05 42.49 3.56
361 370 0.179103 GGCGATGGGGAAAGCAATTG 60.179 55.000 0.00 0.00 0.00 2.32
369 378 2.413211 TTTGTTCCGGCGATGGGGAA 62.413 55.000 9.30 0.00 39.92 3.97
373 382 1.064060 GATTCTTTGTTCCGGCGATGG 59.936 52.381 9.30 0.00 0.00 3.51
378 387 0.097150 GAGCGATTCTTTGTTCCGGC 59.903 55.000 0.00 0.00 0.00 6.13
379 388 1.661112 GAGAGCGATTCTTTGTTCCGG 59.339 52.381 0.00 0.00 35.87 5.14
385 394 5.852738 TTTTGAGAGAGAGCGATTCTTTG 57.147 39.130 0.00 0.00 35.87 2.77
412 421 2.996621 CTGACGGAGAGAGCGAATTTTT 59.003 45.455 0.00 0.00 0.00 1.94
413 422 2.611518 CTGACGGAGAGAGCGAATTTT 58.388 47.619 0.00 0.00 0.00 1.82
414 423 1.737363 GCTGACGGAGAGAGCGAATTT 60.737 52.381 0.00 0.00 0.00 1.82
417 426 2.701780 GGCTGACGGAGAGAGCGAA 61.702 63.158 0.00 0.00 36.44 4.70
419 428 4.200283 GGGCTGACGGAGAGAGCG 62.200 72.222 0.00 0.00 36.44 5.03
423 432 1.830408 CTAGGGGGCTGACGGAGAG 60.830 68.421 0.00 0.00 0.00 3.20
437 446 0.100861 GGAAGGCGACGTTCTCTAGG 59.899 60.000 0.00 0.00 0.00 3.02
439 448 0.957395 ACGGAAGGCGACGTTCTCTA 60.957 55.000 0.00 0.00 40.99 2.43
440 449 2.266627 ACGGAAGGCGACGTTCTCT 61.267 57.895 0.00 0.00 40.99 3.10
443 452 3.110178 CCACGGAAGGCGACGTTC 61.110 66.667 0.00 0.00 42.04 3.95
455 464 2.644992 GGTTGCTTTCTGCCACGG 59.355 61.111 0.00 0.00 42.00 4.94
456 465 1.577328 ATCGGTTGCTTTCTGCCACG 61.577 55.000 0.00 0.00 42.00 4.94
457 466 0.598065 AATCGGTTGCTTTCTGCCAC 59.402 50.000 0.00 0.00 42.00 5.01
458 467 1.269448 GAAATCGGTTGCTTTCTGCCA 59.731 47.619 0.00 0.00 42.00 4.92
463 536 2.556622 TGGAAGGAAATCGGTTGCTTTC 59.443 45.455 2.60 2.60 46.84 2.62
467 540 1.821216 TCTGGAAGGAAATCGGTTGC 58.179 50.000 0.00 0.00 0.00 4.17
472 545 3.191162 TGTGCATTTCTGGAAGGAAATCG 59.809 43.478 0.00 0.00 42.02 3.34
473 546 4.741342 CTGTGCATTTCTGGAAGGAAATC 58.259 43.478 0.00 0.00 42.02 2.17
503 576 0.179129 GATGAAATTGGGCCGTGCAG 60.179 55.000 0.00 0.00 0.00 4.41
504 577 0.897401 TGATGAAATTGGGCCGTGCA 60.897 50.000 0.00 0.00 0.00 4.57
505 578 0.461135 ATGATGAAATTGGGCCGTGC 59.539 50.000 0.00 0.00 0.00 5.34
506 579 1.750206 TGATGATGAAATTGGGCCGTG 59.250 47.619 0.00 0.00 0.00 4.94
507 580 2.026641 CTGATGATGAAATTGGGCCGT 58.973 47.619 0.00 0.00 0.00 5.68
509 582 3.559069 TCTCTGATGATGAAATTGGGCC 58.441 45.455 0.00 0.00 0.00 5.80
511 584 7.400599 TTTCTTCTCTGATGATGAAATTGGG 57.599 36.000 10.88 0.00 36.13 4.12
512 585 8.301720 TGTTTTCTTCTCTGATGATGAAATTGG 58.698 33.333 13.49 0.00 38.76 3.16
514 587 8.019669 CGTGTTTTCTTCTCTGATGATGAAATT 58.980 33.333 13.49 0.00 38.76 1.82
515 588 7.524912 CGTGTTTTCTTCTCTGATGATGAAAT 58.475 34.615 13.49 0.00 38.76 2.17
516 589 6.566564 GCGTGTTTTCTTCTCTGATGATGAAA 60.567 38.462 10.88 10.88 37.91 2.69
517 590 5.106948 GCGTGTTTTCTTCTCTGATGATGAA 60.107 40.000 0.00 0.00 0.00 2.57
519 592 4.152938 TGCGTGTTTTCTTCTCTGATGATG 59.847 41.667 0.00 0.00 0.00 3.07
544 618 2.331893 TGCTGGAAACGGGAATGCG 61.332 57.895 0.00 0.00 37.13 4.73
546 620 1.501741 CGTGCTGGAAACGGGAATG 59.498 57.895 0.00 0.00 39.52 2.67
640 753 3.325201 GATGGTGGGTGGGGACGAC 62.325 68.421 0.00 0.00 0.00 4.34
663 776 2.938539 GATCTGAACGGACGGCGAGG 62.939 65.000 16.62 4.26 0.00 4.63
813 956 4.789075 CCTACCACGTCACCGCGG 62.789 72.222 26.86 26.86 42.04 6.46
814 957 4.047059 ACCTACCACGTCACCGCG 62.047 66.667 0.00 0.00 37.70 6.46
815 958 2.431942 CACCTACCACGTCACCGC 60.432 66.667 0.00 0.00 37.70 5.68
816 959 2.431942 GCACCTACCACGTCACCG 60.432 66.667 0.00 0.00 40.83 4.94
825 968 0.108281 GGAAGACGAAGGCACCTACC 60.108 60.000 0.00 0.00 0.00 3.18
886 1039 3.418995 GTTTAGTTTTGGGGAGGAGTCC 58.581 50.000 0.00 0.00 43.05 3.85
887 1040 3.418995 GGTTTAGTTTTGGGGAGGAGTC 58.581 50.000 0.00 0.00 0.00 3.36
888 1041 2.109480 GGGTTTAGTTTTGGGGAGGAGT 59.891 50.000 0.00 0.00 0.00 3.85
890 1043 2.377531 GAGGGTTTAGTTTTGGGGAGGA 59.622 50.000 0.00 0.00 0.00 3.71
891 1044 2.556782 GGAGGGTTTAGTTTTGGGGAGG 60.557 54.545 0.00 0.00 0.00 4.30
893 1046 1.430075 GGGAGGGTTTAGTTTTGGGGA 59.570 52.381 0.00 0.00 0.00 4.81
912 1076 3.700350 AGGAGGGAGAGGGTGGGG 61.700 72.222 0.00 0.00 0.00 4.96
913 1077 2.041405 GAGGAGGGAGAGGGTGGG 60.041 72.222 0.00 0.00 0.00 4.61
915 1079 2.443016 CCGAGGAGGGAGAGGGTG 60.443 72.222 0.00 0.00 35.97 4.61
916 1080 2.617538 TCCGAGGAGGGAGAGGGT 60.618 66.667 0.00 0.00 41.52 4.34
922 1086 0.687757 CATCCAACTCCGAGGAGGGA 60.688 60.000 21.79 18.69 45.88 4.20
923 1087 1.826024 CATCCAACTCCGAGGAGGG 59.174 63.158 21.79 14.47 45.88 4.30
924 1088 1.144936 GCATCCAACTCCGAGGAGG 59.855 63.158 21.79 6.81 45.88 4.30
925 1089 1.227089 CGCATCCAACTCCGAGGAG 60.227 63.158 17.01 17.01 46.91 3.69
926 1090 2.892640 CGCATCCAACTCCGAGGA 59.107 61.111 0.00 0.00 38.50 3.71
927 1091 2.892425 GCGCATCCAACTCCGAGG 60.892 66.667 0.30 0.00 0.00 4.63
928 1092 2.892425 GGCGCATCCAACTCCGAG 60.892 66.667 10.83 0.00 34.01 4.63
969 1415 2.432628 CGCGGTGGTCTGGTTCTC 60.433 66.667 0.00 0.00 0.00 2.87
1062 1514 4.172512 ATGAGCAGCTGCCTCCGG 62.173 66.667 34.39 0.00 43.38 5.14
1316 1792 0.465097 CATGAGCGGCTCCATCCTTT 60.465 55.000 26.00 0.93 0.00 3.11
1317 1793 1.147824 CATGAGCGGCTCCATCCTT 59.852 57.895 26.00 2.62 0.00 3.36
1318 1794 2.827423 CATGAGCGGCTCCATCCT 59.173 61.111 26.00 4.16 0.00 3.24
1319 1795 2.976903 GCATGAGCGGCTCCATCC 60.977 66.667 26.00 7.46 0.00 3.51
1557 2038 6.583806 CAGGAGTAGCAACAATTCAATTCAAC 59.416 38.462 0.00 0.00 0.00 3.18
1713 2210 7.094508 TCTTTCTCTGACTGACTATAAGCAG 57.905 40.000 0.00 0.00 38.10 4.24
1775 2276 1.361668 CGTCACGAATGCTTCCAGGG 61.362 60.000 0.00 0.00 0.00 4.45
1830 2331 8.013947 GCATATCACAGCAATAGAATTGTACAG 58.986 37.037 0.00 0.00 0.00 2.74
1842 2343 1.063792 TGGGTGGCATATCACAGCAAT 60.064 47.619 0.00 0.00 39.27 3.56
1859 2360 4.163078 ACATACTCAAGACTTCCTCATGGG 59.837 45.833 0.00 0.00 0.00 4.00
1893 2394 7.011389 GTGTATTACAATGACAGAGCATGCTTA 59.989 37.037 23.61 3.57 0.00 3.09
1894 2395 5.882000 TGTATTACAATGACAGAGCATGCTT 59.118 36.000 23.61 5.73 0.00 3.91
1895 2396 5.295292 GTGTATTACAATGACAGAGCATGCT 59.705 40.000 22.92 22.92 0.00 3.79
1921 2422 1.217001 CTGTGAGTGTGCTTGCGTTA 58.783 50.000 0.00 0.00 0.00 3.18
1935 2439 2.886523 CAAGCCAATCTCCAAACTGTGA 59.113 45.455 0.00 0.00 0.00 3.58
2156 2833 2.149973 ATTGAGGCCCCAAAGATGAC 57.850 50.000 2.86 0.00 0.00 3.06
2231 2908 3.627577 AGGTACATTGCGCAGATTAAAGG 59.372 43.478 11.31 0.00 0.00 3.11
2234 2911 4.257731 TCAAGGTACATTGCGCAGATTAA 58.742 39.130 15.24 0.00 0.00 1.40
2450 3136 6.015095 GGAAAGAGGGGCATAATAAGGAAATG 60.015 42.308 0.00 0.00 0.00 2.32
2474 3160 7.576236 CGAACAAGTATCTAATAGCAATTGGG 58.424 38.462 7.72 0.00 0.00 4.12
2477 3164 7.786178 TGCGAACAAGTATCTAATAGCAATT 57.214 32.000 0.00 0.00 0.00 2.32
2677 3459 3.438781 TGCAGTTAAAGATTAGCCCAACG 59.561 43.478 0.00 0.00 0.00 4.10
2732 3514 6.384886 TGATAGGATGGCATCAGCATCTATAA 59.615 38.462 27.39 14.64 44.61 0.98
2767 3549 8.820933 ACATGAGACAAATCATTTCAGTATACG 58.179 33.333 0.00 0.00 37.84 3.06
2771 3553 9.065798 TGAAACATGAGACAAATCATTTCAGTA 57.934 29.630 0.00 0.00 37.84 2.74
2981 3763 7.740519 CAGTTTTCACACTGGTTTAGAAAAG 57.259 36.000 0.00 0.00 40.60 2.27
3168 3957 3.377485 CCGTAACGAGAGATCTGAAGGAA 59.623 47.826 0.00 0.00 0.00 3.36
3184 3973 1.136500 GACATGGGAGGAGTCCGTAAC 59.864 57.143 2.76 0.00 45.05 2.50
3219 4008 5.655488 CTGATAATGTCAAAGAGAGGTCGT 58.345 41.667 0.00 0.00 36.14 4.34
3231 4020 5.929415 TCGTTAAAGTGTGCTGATAATGTCA 59.071 36.000 0.00 0.00 35.05 3.58
3252 4041 0.821517 TCCAGTGCATAACGGATCGT 59.178 50.000 0.00 0.00 43.97 3.73
3254 4043 1.202580 AGCTCCAGTGCATAACGGATC 60.203 52.381 0.00 0.00 33.12 3.36
3260 4049 1.908619 TCCAGAAGCTCCAGTGCATAA 59.091 47.619 0.00 0.00 34.99 1.90
3292 4081 4.503123 CGTCTGAGATGGTTTGGGCATATA 60.503 45.833 0.00 0.00 0.00 0.86
3358 4147 6.206243 GGGTCCAGAATGATGATAAACATGAG 59.794 42.308 0.00 0.00 39.69 2.90
3361 4150 6.017211 TGGGTCCAGAATGATGATAAACAT 57.983 37.500 0.00 0.00 39.69 2.71
3365 4154 5.163205 ACGATTGGGTCCAGAATGATGATAA 60.163 40.000 0.00 0.00 39.69 1.75
3398 4187 1.670811 GTTGAGTTGGATATGTGGCCG 59.329 52.381 0.00 0.00 0.00 6.13
3406 4195 2.106477 TGCGCATGTTGAGTTGGATA 57.894 45.000 5.66 0.00 0.00 2.59
3412 4201 1.086067 CGGAGATGCGCATGTTGAGT 61.086 55.000 30.76 1.03 0.00 3.41
3518 4307 3.383761 CACAAAAGCTAAAAGGCAGGTG 58.616 45.455 0.00 0.00 34.17 4.00
3611 4400 8.500753 TTAGTTGTATAACAATAAGGCTGTGG 57.499 34.615 5.08 0.00 40.59 4.17
3635 4426 8.089597 TGCAAAACAGATGTGTCATCAAATATT 58.910 29.630 11.47 0.00 35.08 1.28
3815 4606 2.256117 ACGGGAAAGTGGAAGACAAG 57.744 50.000 0.00 0.00 0.00 3.16
3816 4607 4.069304 CAATACGGGAAAGTGGAAGACAA 58.931 43.478 0.00 0.00 0.00 3.18
3817 4608 3.670625 CAATACGGGAAAGTGGAAGACA 58.329 45.455 0.00 0.00 0.00 3.41
3818 4609 2.418976 GCAATACGGGAAAGTGGAAGAC 59.581 50.000 0.00 0.00 0.00 3.01
3819 4610 2.039216 TGCAATACGGGAAAGTGGAAGA 59.961 45.455 0.00 0.00 0.00 2.87
3883 4674 2.572209 TACCCTGGTAAGTGCCAAAC 57.428 50.000 0.00 0.00 38.18 2.93
3888 4679 2.102588 ACATCGATACCCTGGTAAGTGC 59.897 50.000 0.00 0.00 33.99 4.40
3961 4752 9.483916 TCTATACATCAAAAATACCATACCACG 57.516 33.333 0.00 0.00 0.00 4.94
4018 4809 6.694447 AGTGCAAAGCAATATTTGAGACATT 58.306 32.000 3.49 0.00 41.47 2.71
4126 4917 4.866921 ACAAAAATTGTAACGAAGGAGGC 58.133 39.130 0.00 0.00 43.27 4.70
4128 4919 5.981174 TCGACAAAAATTGTAACGAAGGAG 58.019 37.500 5.03 0.00 45.52 3.69
4131 4922 5.744490 ACCTCGACAAAAATTGTAACGAAG 58.256 37.500 7.93 5.44 45.52 3.79
4134 4925 6.140108 CAGAAACCTCGACAAAAATTGTAACG 59.860 38.462 0.00 0.00 45.52 3.18
4145 4936 4.703897 ACTGAAATCAGAAACCTCGACAA 58.296 39.130 16.93 0.00 46.59 3.18
4169 4960 5.999600 GGGGTAAAGTCACTAGTAAGCAAAA 59.000 40.000 0.00 0.00 0.00 2.44
4290 5081 1.736645 CGATTGCCGTCAAGGTCGT 60.737 57.895 0.00 0.00 43.70 4.34
4291 5082 2.452813 CCGATTGCCGTCAAGGTCG 61.453 63.158 0.00 0.00 43.70 4.79
4442 5233 6.477253 TGTGCTTCCTTTGTTACCATATACA 58.523 36.000 0.00 0.00 0.00 2.29
4509 5300 5.794687 AAAAGTTGCACTTTAACCAAAGC 57.205 34.783 12.60 0.00 46.78 3.51
4549 5340 1.081892 AGCTGTTGAATGTAGCTGCG 58.918 50.000 0.00 0.00 45.40 5.18
4659 5450 4.024048 CCAAACAAGTAGTCACCACATGTC 60.024 45.833 0.00 0.00 0.00 3.06
4950 5744 6.351711 TGAGCAATAATAGTGCATCTTGAGT 58.648 36.000 15.20 0.00 44.74 3.41
4965 5759 9.288576 CAATAAGTTATGGATCCTGAGCAATAA 57.711 33.333 14.23 4.64 0.00 1.40
5096 5890 4.723309 AGATTTCATACCTGGCCTCATTC 58.277 43.478 3.32 0.00 0.00 2.67
5373 6182 1.200716 CGTAAAGCGTCTGTAGGTGGA 59.799 52.381 0.00 0.00 35.54 4.02
5398 6207 0.182537 ATCCGGAATGATTGGGCGAA 59.817 50.000 9.01 0.00 0.00 4.70
5442 10493 4.694233 CTCTGTGCCAGCAGCCGT 62.694 66.667 0.00 0.00 42.71 5.68
5465 10516 4.588951 ACGGTATCTGAGGAATAAGCATCA 59.411 41.667 0.00 0.00 0.00 3.07
5511 10562 0.320697 GCCTACGGGTCTGTCAACTT 59.679 55.000 0.00 0.00 34.45 2.66
5513 10564 1.079336 GGCCTACGGGTCTGTCAAC 60.079 63.158 0.00 0.00 33.70 3.18
5514 10565 3.384348 GGCCTACGGGTCTGTCAA 58.616 61.111 0.00 0.00 33.70 3.18
5544 10595 1.376424 CCTGACGGAGCAATGCTGT 60.376 57.895 14.48 4.93 39.88 4.40
5546 10597 2.437359 GCCTGACGGAGCAATGCT 60.437 61.111 7.79 7.79 43.88 3.79
5619 10670 1.895798 CAGCCACACTAGGACTGAGAA 59.104 52.381 0.00 0.00 35.91 2.87
5629 10680 3.037851 AGAGGATGATCAGCCACACTA 57.962 47.619 30.59 0.00 39.89 2.74
5650 11246 3.170991 AGTAGTTCAGTAGCTGGTCCA 57.829 47.619 0.00 0.00 31.51 4.02
5667 11263 1.795768 CAGTGAAGGCTCGCAAAGTA 58.204 50.000 0.00 0.00 34.29 2.24
5672 11329 4.704833 GGGCAGTGAAGGCTCGCA 62.705 66.667 0.00 0.00 34.29 5.10
5737 11394 1.853963 AGCCGCCTCTTTCTCTCTTA 58.146 50.000 0.00 0.00 0.00 2.10
5765 11422 0.108804 CATACAACCGCCACGACTCT 60.109 55.000 0.00 0.00 0.00 3.24
5809 11466 4.549458 CCAAAAGCGATGATTCACTTGTT 58.451 39.130 0.00 0.00 0.00 2.83
5845 11502 2.363306 TGCAATGGGATGGATGGTAC 57.637 50.000 0.00 0.00 0.00 3.34
5873 11531 5.581874 GGTCTGAGACAGTACAGTACTCTAC 59.418 48.000 15.33 0.32 36.76 2.59
6028 11688 2.365293 GGTTCAGCAGGGTCAACAAAAT 59.635 45.455 0.00 0.00 0.00 1.82
6095 11756 1.804151 GCAAACCATGACTGCGAGTTA 59.196 47.619 0.00 0.00 0.00 2.24
6117 11778 4.411540 AGAGATGCTTGTCATAGGGTGAAT 59.588 41.667 0.00 0.00 38.90 2.57
6120 11781 3.834489 AGAGATGCTTGTCATAGGGTG 57.166 47.619 0.00 0.00 35.05 4.61
6273 11935 0.040204 CACCCCCAGAAGGAGCATTT 59.960 55.000 0.00 0.00 38.24 2.32
6292 11954 7.880195 ACATATATGACCAACAGGAATCTAAGC 59.120 37.037 19.63 0.00 0.00 3.09
6453 12115 8.299262 ACACATAATGCACGAGTTAAGATATC 57.701 34.615 0.00 0.00 0.00 1.63
6674 12336 6.208644 CACTGGTGTTGTTCCTTTTATTCTG 58.791 40.000 0.00 0.00 0.00 3.02
6902 12577 5.522460 CAGAAAAGGCATATGCTCAAATTGG 59.478 40.000 26.12 7.61 41.70 3.16
6930 12605 8.317679 CCACTTGTTTGGATATTTTTATTCCCA 58.682 33.333 0.00 0.00 39.24 4.37
6958 12633 6.832900 TGAATCACCTGCACCAAATGAATATA 59.167 34.615 0.00 0.00 0.00 0.86
6976 12651 6.801862 GTGCCAGTATTAACTTTGTGAATCAC 59.198 38.462 6.41 6.41 31.97 3.06
6978 12653 6.072175 TGGTGCCAGTATTAACTTTGTGAATC 60.072 38.462 0.00 0.00 31.97 2.52
7085 12760 4.275689 TGCTCGAATGTAAATAGGCCATTG 59.724 41.667 5.01 0.00 0.00 2.82
7156 12831 4.423625 AGGATTGAGGCTTAGCGTTTAT 57.576 40.909 0.00 0.00 0.00 1.40
7188 12863 8.896722 TTGAGGTCTAGAGTTTAGGTCTATTT 57.103 34.615 0.00 0.00 0.00 1.40
7243 12918 4.959723 CCACATTGGTTGGAAAAATGTCT 58.040 39.130 0.00 0.00 41.39 3.41
7268 12943 8.548721 CGTGCTACATTTATTTAGGTAAAGGAG 58.451 37.037 0.00 0.00 31.73 3.69
7382 13059 7.775093 AGCATCTACAATAACCAAGCAATTCTA 59.225 33.333 0.00 0.00 0.00 2.10
7508 13186 9.125026 CCCTTAAAAATTGCATCTACAGTAGAT 57.875 33.333 16.34 16.34 46.06 1.98
7512 13190 6.493458 ACACCCTTAAAAATTGCATCTACAGT 59.507 34.615 0.00 0.00 0.00 3.55
7543 13311 1.003718 GACCTGTTCGGACAAGGGG 60.004 63.158 14.47 7.93 34.85 4.79
7574 13342 5.964958 ACTAATCATAATTTGGGGCATCG 57.035 39.130 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.