Multiple sequence alignment - TraesCS5D01G253600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G253600 chr5D 100.000 6328 0 0 1 6328 360532618 360538945 0.000000e+00 11686.0
1 TraesCS5D01G253600 chr5D 89.769 303 28 3 391 692 360417415 360417715 9.950000e-103 385.0
2 TraesCS5D01G253600 chr5D 97.838 185 4 0 1 185 264698742 264698926 2.850000e-83 320.0
3 TraesCS5D01G253600 chr5D 97.838 185 2 1 1 183 298044302 298044118 1.020000e-82 318.0
4 TraesCS5D01G253600 chr5B 90.732 3442 199 47 2366 5752 425873173 425876549 0.000000e+00 4479.0
5 TraesCS5D01G253600 chr5B 92.176 1342 80 14 1016 2337 425870521 425871857 0.000000e+00 1873.0
6 TraesCS5D01G253600 chr5B 77.287 929 138 43 2209 3124 335386230 335387098 4.440000e-131 479.0
7 TraesCS5D01G253600 chr5B 94.737 304 9 5 5820 6118 425876659 425876960 3.450000e-127 466.0
8 TraesCS5D01G253600 chr5B 85.779 443 54 7 2657 3093 49570890 49570451 1.610000e-125 460.0
9 TraesCS5D01G253600 chr5B 80.597 469 82 6 2703 3166 449991654 449992118 2.810000e-93 353.0
10 TraesCS5D01G253600 chr5B 90.260 154 11 2 2215 2367 255969282 255969432 1.390000e-46 198.0
11 TraesCS5D01G253600 chr5B 86.029 136 10 4 6141 6268 425877011 425877145 3.080000e-28 137.0
12 TraesCS5D01G253600 chr5B 76.163 172 31 8 2885 3051 249585623 249585457 1.460000e-11 82.4
13 TraesCS5D01G253600 chr5A 89.502 1305 86 28 3261 4523 461480413 461481708 0.000000e+00 1604.0
14 TraesCS5D01G253600 chr5A 88.146 1316 100 17 815 2094 461478976 461480271 0.000000e+00 1515.0
15 TraesCS5D01G253600 chr5A 81.455 1100 137 44 4522 5588 461484059 461485124 0.000000e+00 839.0
16 TraesCS5D01G253600 chr5A 87.992 508 32 11 180 667 461478370 461478868 1.980000e-159 573.0
17 TraesCS5D01G253600 chr5A 86.463 458 37 14 815 1259 461473867 461474312 4.440000e-131 479.0
18 TraesCS5D01G253600 chr5A 84.977 213 30 2 180 391 460822078 460821867 1.380000e-51 215.0
19 TraesCS5D01G253600 chr5A 85.646 209 23 2 492 693 461473369 461473577 4.970000e-51 213.0
20 TraesCS5D01G253600 chr5A 84.507 213 31 2 180 391 460822913 460822702 6.430000e-50 209.0
21 TraesCS5D01G253600 chr5A 94.286 70 2 2 2128 2195 461480267 461480336 8.680000e-19 106.0
22 TraesCS5D01G253600 chr1B 83.841 656 89 13 2598 3247 489541748 489541104 5.420000e-170 608.0
23 TraesCS5D01G253600 chr1B 87.013 154 15 3 2215 2367 396367821 396367970 1.090000e-37 169.0
24 TraesCS5D01G253600 chr3D 81.371 671 102 13 2514 3177 7173757 7174411 5.620000e-145 525.0
25 TraesCS5D01G253600 chr3A 80.108 739 118 20 2527 3254 65825407 65826127 2.020000e-144 523.0
26 TraesCS5D01G253600 chr2A 78.292 691 116 17 2508 3190 33553828 33553164 1.270000e-111 414.0
27 TraesCS5D01G253600 chr4D 83.791 401 52 10 2788 3178 31802687 31803084 1.000000e-97 368.0
28 TraesCS5D01G253600 chr4D 86.709 158 20 1 2211 2367 386159581 386159424 2.350000e-39 174.0
29 TraesCS5D01G253600 chr2D 98.361 183 3 0 1 183 369935486 369935304 7.910000e-84 322.0
30 TraesCS5D01G253600 chr2D 97.297 185 5 0 1 185 361475407 361475591 1.320000e-81 315.0
31 TraesCS5D01G253600 chr6D 97.326 187 4 1 1 187 202898241 202898056 3.680000e-82 316.0
32 TraesCS5D01G253600 chr1D 97.814 183 4 0 1 183 219547914 219547732 3.680000e-82 316.0
33 TraesCS5D01G253600 chr1D 97.814 183 4 0 1 183 235979498 235979316 3.680000e-82 316.0
34 TraesCS5D01G253600 chr7A 96.809 188 6 0 1 188 175447874 175448061 1.320000e-81 315.0
35 TraesCS5D01G253600 chr7A 88.158 152 13 2 2217 2367 241802937 241802790 6.520000e-40 176.0
36 TraesCS5D01G253600 chr6A 96.809 188 6 0 1 188 540686344 540686157 1.320000e-81 315.0
37 TraesCS5D01G253600 chr6A 89.172 157 14 2 2212 2367 175558396 175558550 6.470000e-45 193.0
38 TraesCS5D01G253600 chr4B 90.395 177 14 2 3070 3246 599688890 599688717 4.930000e-56 230.0
39 TraesCS5D01G253600 chr4B 87.374 198 18 5 3057 3253 72178577 72178386 2.970000e-53 220.0
40 TraesCS5D01G253600 chr3B 86.452 155 14 4 2215 2367 482989664 482989515 5.080000e-36 163.0
41 TraesCS5D01G253600 chr4A 85.897 156 17 3 2211 2365 94756192 94756041 1.830000e-35 161.0
42 TraesCS5D01G253600 chr4A 85.350 157 20 2 2212 2367 597021408 597021562 6.570000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G253600 chr5D 360532618 360538945 6327 False 11686.00 11686 100.0000 1 6328 1 chr5D.!!$F3 6327
1 TraesCS5D01G253600 chr5B 425870521 425877145 6624 False 1738.75 4479 90.9185 1016 6268 4 chr5B.!!$F4 5252
2 TraesCS5D01G253600 chr5B 335386230 335387098 868 False 479.00 479 77.2870 2209 3124 1 chr5B.!!$F2 915
3 TraesCS5D01G253600 chr5A 461478370 461485124 6754 False 927.40 1604 88.2762 180 5588 5 chr5A.!!$F2 5408
4 TraesCS5D01G253600 chr5A 461473369 461474312 943 False 346.00 479 86.0545 492 1259 2 chr5A.!!$F1 767
5 TraesCS5D01G253600 chr5A 460821867 460822913 1046 True 212.00 215 84.7420 180 391 2 chr5A.!!$R1 211
6 TraesCS5D01G253600 chr1B 489541104 489541748 644 True 608.00 608 83.8410 2598 3247 1 chr1B.!!$R1 649
7 TraesCS5D01G253600 chr3D 7173757 7174411 654 False 525.00 525 81.3710 2514 3177 1 chr3D.!!$F1 663
8 TraesCS5D01G253600 chr3A 65825407 65826127 720 False 523.00 523 80.1080 2527 3254 1 chr3A.!!$F1 727
9 TraesCS5D01G253600 chr2A 33553164 33553828 664 True 414.00 414 78.2920 2508 3190 1 chr2A.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 539 0.179081 GAAGGATACCTGTGGCGACC 60.179 60.000 0.00 0.0 32.13 4.79 F
1990 2309 0.106419 GTGGAGTTTGGGGTTCACCA 60.106 55.000 0.00 0.0 42.91 4.17 F
1992 2311 1.179174 GGAGTTTGGGGTTCACCAGC 61.179 60.000 0.00 0.0 42.47 4.85 F
3146 5073 1.416401 ACGACATCTGTTGGAGTTGGT 59.584 47.619 2.77 0.0 33.72 3.67 F
3740 5713 0.453793 TTGGTCACACTGTTTTGCCG 59.546 50.000 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2486 4103 0.179000 CTGTGATAGGCAGTGGGGTC 59.821 60.000 0.00 0.0 0.00 4.46 R
3128 5055 3.744660 AGAACCAACTCCAACAGATGTC 58.255 45.455 0.00 0.0 0.00 3.06 R
3390 5363 4.065088 GACAGTTATTGGTGTCTCTGCAA 58.935 43.478 0.00 0.0 40.05 4.08 R
4953 9326 1.624312 TGTACAAACATCAGCCCGGTA 59.376 47.619 0.00 0.0 0.00 4.02 R
5435 9835 0.520827 CTACGACAGAGACCGCGTTC 60.521 60.000 4.92 0.0 38.09 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.532988 GGTAGATCAACTCTTGTAACTCCT 57.467 41.667 0.00 0.00 35.28 3.69
24 25 7.642082 GGTAGATCAACTCTTGTAACTCCTA 57.358 40.000 0.00 0.00 35.28 2.94
25 26 8.240267 GGTAGATCAACTCTTGTAACTCCTAT 57.760 38.462 0.00 0.00 35.28 2.57
26 27 9.352191 GGTAGATCAACTCTTGTAACTCCTATA 57.648 37.037 0.00 0.00 35.28 1.31
29 30 9.127277 AGATCAACTCTTGTAACTCCTATACTC 57.873 37.037 0.00 0.00 0.00 2.59
30 31 8.824756 ATCAACTCTTGTAACTCCTATACTCA 57.175 34.615 0.00 0.00 0.00 3.41
31 32 8.824756 TCAACTCTTGTAACTCCTATACTCAT 57.175 34.615 0.00 0.00 0.00 2.90
32 33 8.904834 TCAACTCTTGTAACTCCTATACTCATC 58.095 37.037 0.00 0.00 0.00 2.92
33 34 8.687242 CAACTCTTGTAACTCCTATACTCATCA 58.313 37.037 0.00 0.00 0.00 3.07
34 35 8.824756 ACTCTTGTAACTCCTATACTCATCAA 57.175 34.615 0.00 0.00 0.00 2.57
35 36 9.256228 ACTCTTGTAACTCCTATACTCATCAAA 57.744 33.333 0.00 0.00 0.00 2.69
36 37 9.743057 CTCTTGTAACTCCTATACTCATCAAAG 57.257 37.037 0.00 0.00 0.00 2.77
37 38 9.256228 TCTTGTAACTCCTATACTCATCAAAGT 57.744 33.333 0.00 0.00 0.00 2.66
38 39 9.522804 CTTGTAACTCCTATACTCATCAAAGTC 57.477 37.037 0.00 0.00 0.00 3.01
39 40 8.589701 TGTAACTCCTATACTCATCAAAGTCA 57.410 34.615 0.00 0.00 0.00 3.41
40 41 9.031537 TGTAACTCCTATACTCATCAAAGTCAA 57.968 33.333 0.00 0.00 0.00 3.18
43 44 8.311395 ACTCCTATACTCATCAAAGTCAATCA 57.689 34.615 0.00 0.00 0.00 2.57
44 45 8.762645 ACTCCTATACTCATCAAAGTCAATCAA 58.237 33.333 0.00 0.00 0.00 2.57
45 46 9.258826 CTCCTATACTCATCAAAGTCAATCAAG 57.741 37.037 0.00 0.00 0.00 3.02
46 47 7.712639 TCCTATACTCATCAAAGTCAATCAAGC 59.287 37.037 0.00 0.00 0.00 4.01
47 48 7.496920 CCTATACTCATCAAAGTCAATCAAGCA 59.503 37.037 0.00 0.00 0.00 3.91
48 49 5.624344 ACTCATCAAAGTCAATCAAGCAG 57.376 39.130 0.00 0.00 0.00 4.24
49 50 4.458295 ACTCATCAAAGTCAATCAAGCAGG 59.542 41.667 0.00 0.00 0.00 4.85
50 51 4.654915 TCATCAAAGTCAATCAAGCAGGA 58.345 39.130 0.00 0.00 0.00 3.86
51 52 5.072055 TCATCAAAGTCAATCAAGCAGGAA 58.928 37.500 0.00 0.00 0.00 3.36
52 53 5.182570 TCATCAAAGTCAATCAAGCAGGAAG 59.817 40.000 0.00 0.00 0.00 3.46
53 54 4.464008 TCAAAGTCAATCAAGCAGGAAGT 58.536 39.130 0.00 0.00 0.00 3.01
54 55 5.620206 TCAAAGTCAATCAAGCAGGAAGTA 58.380 37.500 0.00 0.00 0.00 2.24
55 56 5.702670 TCAAAGTCAATCAAGCAGGAAGTAG 59.297 40.000 0.00 0.00 0.00 2.57
56 57 4.213564 AGTCAATCAAGCAGGAAGTAGG 57.786 45.455 0.00 0.00 0.00 3.18
57 58 3.054802 AGTCAATCAAGCAGGAAGTAGGG 60.055 47.826 0.00 0.00 0.00 3.53
58 59 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
59 60 4.081087 GTCAATCAAGCAGGAAGTAGGGTA 60.081 45.833 0.00 0.00 0.00 3.69
60 61 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
61 62 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
62 63 6.385759 TCAATCAAGCAGGAAGTAGGGTATTA 59.614 38.462 0.00 0.00 0.00 0.98
63 64 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
64 65 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
65 66 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
66 67 4.224762 AGCAGGAAGTAGGGTATTACCTC 58.775 47.826 12.54 2.11 42.09 3.85
67 68 3.324268 GCAGGAAGTAGGGTATTACCTCC 59.676 52.174 12.54 10.66 42.09 4.30
68 69 4.553678 CAGGAAGTAGGGTATTACCTCCA 58.446 47.826 16.39 0.80 42.09 3.86
69 70 5.155905 CAGGAAGTAGGGTATTACCTCCAT 58.844 45.833 16.39 4.17 42.09 3.41
70 71 5.607171 CAGGAAGTAGGGTATTACCTCCATT 59.393 44.000 16.39 7.07 42.09 3.16
71 72 6.785963 CAGGAAGTAGGGTATTACCTCCATTA 59.214 42.308 16.39 1.30 42.09 1.90
72 73 7.291651 CAGGAAGTAGGGTATTACCTCCATTAA 59.708 40.741 16.39 0.00 42.09 1.40
73 74 7.513091 AGGAAGTAGGGTATTACCTCCATTAAG 59.487 40.741 16.39 0.00 42.09 1.85
74 75 7.511714 GGAAGTAGGGTATTACCTCCATTAAGA 59.488 40.741 12.54 0.00 42.09 2.10
75 76 8.493787 AAGTAGGGTATTACCTCCATTAAGAG 57.506 38.462 12.54 0.00 42.09 2.85
82 83 2.528134 CTCCATTAAGAGGGCCCGA 58.472 57.895 18.44 3.54 0.00 5.14
83 84 0.837272 CTCCATTAAGAGGGCCCGAA 59.163 55.000 18.44 10.12 0.00 4.30
84 85 0.544697 TCCATTAAGAGGGCCCGAAC 59.455 55.000 18.44 12.45 0.00 3.95
85 86 0.465642 CCATTAAGAGGGCCCGAACC 60.466 60.000 18.44 7.31 0.00 3.62
86 87 0.546598 CATTAAGAGGGCCCGAACCT 59.453 55.000 18.44 9.75 42.18 3.50
87 88 0.546598 ATTAAGAGGGCCCGAACCTG 59.453 55.000 18.44 0.00 38.79 4.00
88 89 1.559065 TTAAGAGGGCCCGAACCTGG 61.559 60.000 18.44 0.00 38.79 4.45
96 97 3.970205 CCCGAACCTGGGTAAACAT 57.030 52.632 0.00 0.00 44.76 2.71
97 98 1.746470 CCCGAACCTGGGTAAACATC 58.254 55.000 0.00 0.00 44.76 3.06
98 99 1.365699 CCGAACCTGGGTAAACATCG 58.634 55.000 0.00 4.42 0.00 3.84
99 100 1.338389 CCGAACCTGGGTAAACATCGT 60.338 52.381 0.00 0.00 0.00 3.73
100 101 1.730064 CGAACCTGGGTAAACATCGTG 59.270 52.381 0.00 0.00 0.00 4.35
101 102 2.774687 GAACCTGGGTAAACATCGTGT 58.225 47.619 0.00 0.00 0.00 4.49
102 103 2.467566 ACCTGGGTAAACATCGTGTC 57.532 50.000 0.00 0.00 0.00 3.67
103 104 1.002773 ACCTGGGTAAACATCGTGTCC 59.997 52.381 0.00 0.00 0.00 4.02
104 105 1.677820 CCTGGGTAAACATCGTGTCCC 60.678 57.143 0.00 0.00 35.85 4.46
105 106 1.278127 CTGGGTAAACATCGTGTCCCT 59.722 52.381 11.76 0.00 36.23 4.20
106 107 1.700739 TGGGTAAACATCGTGTCCCTT 59.299 47.619 11.76 0.00 36.23 3.95
107 108 2.081462 GGGTAAACATCGTGTCCCTTG 58.919 52.381 0.00 0.00 32.89 3.61
108 109 2.551504 GGGTAAACATCGTGTCCCTTGT 60.552 50.000 0.00 0.00 32.89 3.16
109 110 2.740447 GGTAAACATCGTGTCCCTTGTC 59.260 50.000 0.00 0.00 0.00 3.18
110 111 2.930826 AAACATCGTGTCCCTTGTCT 57.069 45.000 0.00 0.00 0.00 3.41
111 112 2.457366 AACATCGTGTCCCTTGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
112 113 0.608640 ACATCGTGTCCCTTGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
113 114 0.898320 CATCGTGTCCCTTGTCTCCT 59.102 55.000 0.00 0.00 0.00 3.69
114 115 0.898320 ATCGTGTCCCTTGTCTCCTG 59.102 55.000 0.00 0.00 0.00 3.86
115 116 0.469331 TCGTGTCCCTTGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
116 117 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
117 118 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
118 119 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
119 120 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
120 121 2.258109 GTCCCTTGTCTCCTGTTACCT 58.742 52.381 0.00 0.00 0.00 3.08
121 122 2.638363 GTCCCTTGTCTCCTGTTACCTT 59.362 50.000 0.00 0.00 0.00 3.50
122 123 2.904434 TCCCTTGTCTCCTGTTACCTTC 59.096 50.000 0.00 0.00 0.00 3.46
123 124 2.353803 CCCTTGTCTCCTGTTACCTTCG 60.354 54.545 0.00 0.00 0.00 3.79
124 125 2.561419 CCTTGTCTCCTGTTACCTTCGA 59.439 50.000 0.00 0.00 0.00 3.71
125 126 3.195825 CCTTGTCTCCTGTTACCTTCGAT 59.804 47.826 0.00 0.00 0.00 3.59
126 127 4.425520 CTTGTCTCCTGTTACCTTCGATC 58.574 47.826 0.00 0.00 0.00 3.69
127 128 3.698289 TGTCTCCTGTTACCTTCGATCT 58.302 45.455 0.00 0.00 0.00 2.75
128 129 4.087182 TGTCTCCTGTTACCTTCGATCTT 58.913 43.478 0.00 0.00 0.00 2.40
129 130 4.158025 TGTCTCCTGTTACCTTCGATCTTC 59.842 45.833 0.00 0.00 0.00 2.87
130 131 4.158025 GTCTCCTGTTACCTTCGATCTTCA 59.842 45.833 0.00 0.00 0.00 3.02
131 132 4.399618 TCTCCTGTTACCTTCGATCTTCAG 59.600 45.833 0.00 0.00 0.00 3.02
132 133 4.341487 TCCTGTTACCTTCGATCTTCAGA 58.659 43.478 0.00 0.00 0.00 3.27
133 134 4.158025 TCCTGTTACCTTCGATCTTCAGAC 59.842 45.833 0.00 0.00 0.00 3.51
134 135 4.092771 TGTTACCTTCGATCTTCAGACG 57.907 45.455 0.00 0.00 0.00 4.18
135 136 2.846039 TACCTTCGATCTTCAGACGC 57.154 50.000 0.00 0.00 0.00 5.19
136 137 0.888619 ACCTTCGATCTTCAGACGCA 59.111 50.000 0.00 0.00 0.00 5.24
137 138 1.272781 CCTTCGATCTTCAGACGCAC 58.727 55.000 0.00 0.00 0.00 5.34
138 139 1.402852 CCTTCGATCTTCAGACGCACA 60.403 52.381 0.00 0.00 0.00 4.57
139 140 1.916651 CTTCGATCTTCAGACGCACAG 59.083 52.381 0.00 0.00 0.00 3.66
140 141 0.881796 TCGATCTTCAGACGCACAGT 59.118 50.000 0.00 0.00 0.00 3.55
141 142 1.269723 TCGATCTTCAGACGCACAGTT 59.730 47.619 0.00 0.00 0.00 3.16
142 143 1.651138 CGATCTTCAGACGCACAGTTC 59.349 52.381 0.00 0.00 0.00 3.01
143 144 1.651138 GATCTTCAGACGCACAGTTCG 59.349 52.381 0.00 0.00 0.00 3.95
144 145 0.318699 TCTTCAGACGCACAGTTCGG 60.319 55.000 0.00 0.00 0.00 4.30
145 146 1.284982 CTTCAGACGCACAGTTCGGG 61.285 60.000 0.00 0.00 0.00 5.14
146 147 1.740332 TTCAGACGCACAGTTCGGGA 61.740 55.000 0.00 0.00 0.00 5.14
147 148 2.022129 CAGACGCACAGTTCGGGAC 61.022 63.158 0.00 0.00 0.00 4.46
148 149 2.737376 GACGCACAGTTCGGGACC 60.737 66.667 0.00 0.00 0.00 4.46
149 150 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
151 152 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
152 153 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
153 154 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
154 155 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
155 156 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
156 157 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
160 161 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
161 162 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
162 163 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
163 164 1.902432 GACCCCCTACCCGAGATCG 60.902 68.421 0.00 0.00 39.44 3.69
173 174 3.089784 CGAGATCGGCCGGTTTTG 58.910 61.111 27.83 14.51 35.37 2.44
174 175 1.447140 CGAGATCGGCCGGTTTTGA 60.447 57.895 27.83 4.46 35.37 2.69
175 176 1.693083 CGAGATCGGCCGGTTTTGAC 61.693 60.000 27.83 5.44 35.37 3.18
176 177 0.672401 GAGATCGGCCGGTTTTGACA 60.672 55.000 27.83 2.60 0.00 3.58
177 178 0.953960 AGATCGGCCGGTTTTGACAC 60.954 55.000 27.83 3.65 0.00 3.67
178 179 1.918868 GATCGGCCGGTTTTGACACC 61.919 60.000 27.83 0.00 0.00 4.16
231 232 3.610242 GGTCGCATCTAAGATGCTATTCG 59.390 47.826 18.67 8.23 42.50 3.34
239 240 9.091784 GCATCTAAGATGCTATTCGATCAATTA 57.908 33.333 1.67 0.00 41.52 1.40
248 249 3.475566 TTCGATCAATTAGCCTCCTGG 57.524 47.619 0.00 0.00 0.00 4.45
257 258 2.409984 TAGCCTCCTGGTGGTTCCCA 62.410 60.000 15.72 0.00 35.27 4.37
258 259 2.616458 GCCTCCTGGTGGTTCCCAT 61.616 63.158 15.72 0.00 35.28 4.00
259 260 1.304282 CCTCCTGGTGGTTCCCATG 59.696 63.158 6.63 0.00 35.28 3.66
260 261 1.304282 CTCCTGGTGGTTCCCATGG 59.696 63.158 4.14 4.14 35.28 3.66
261 262 2.362889 CCTGGTGGTTCCCATGGC 60.363 66.667 6.09 0.00 35.28 4.40
262 263 2.362889 CTGGTGGTTCCCATGGCC 60.363 66.667 6.09 2.61 35.28 5.36
263 264 3.188903 TGGTGGTTCCCATGGCCA 61.189 61.111 8.56 8.56 35.28 5.36
264 265 2.364160 GGTGGTTCCCATGGCCAT 59.636 61.111 14.09 14.09 35.28 4.40
282 283 5.421693 TGGCCATAATTTCACAATAGTTGCT 59.578 36.000 0.00 0.00 0.00 3.91
294 295 0.320050 TAGTTGCTCGTGTCATGCCA 59.680 50.000 0.00 0.00 0.00 4.92
304 305 1.137872 GTGTCATGCCAAAACCCAACA 59.862 47.619 0.00 0.00 0.00 3.33
306 307 2.437281 TGTCATGCCAAAACCCAACATT 59.563 40.909 0.00 0.00 0.00 2.71
320 321 3.056393 CCCAACATTGACACATTGATGCT 60.056 43.478 0.00 0.00 0.00 3.79
351 352 4.598807 TGATAGGGGCACACATGATCTAAT 59.401 41.667 0.00 0.00 0.00 1.73
356 357 3.457234 GGCACACATGATCTAATCACGA 58.543 45.455 0.00 0.00 43.01 4.35
369 370 3.558931 AATCACGATGTCCTTGGCATA 57.441 42.857 0.00 0.00 0.00 3.14
412 413 0.809385 GTCGAGACGATCAGGGTCAA 59.191 55.000 0.00 0.00 38.42 3.18
413 414 0.809385 TCGAGACGATCAGGGTCAAC 59.191 55.000 0.00 0.00 36.87 3.18
415 416 2.014857 CGAGACGATCAGGGTCAACTA 58.985 52.381 0.00 0.00 36.87 2.24
426 427 2.239907 AGGGTCAACTATTGGGAGCTTC 59.760 50.000 0.00 0.00 0.00 3.86
430 431 2.305635 TCAACTATTGGGAGCTTCAGCA 59.694 45.455 0.75 0.00 45.16 4.41
435 436 0.473755 TTGGGAGCTTCAGCAGTGAA 59.526 50.000 0.75 0.00 45.16 3.18
436 437 0.694771 TGGGAGCTTCAGCAGTGAAT 59.305 50.000 0.75 0.00 41.96 2.57
504 505 2.299013 ACGAAGGTCTTGCACTGTCATA 59.701 45.455 0.00 0.00 0.00 2.15
517 518 5.817296 TGCACTGTCATATGATCTTTACACC 59.183 40.000 9.02 0.00 0.00 4.16
538 539 0.179081 GAAGGATACCTGTGGCGACC 60.179 60.000 0.00 0.00 32.13 4.79
561 586 4.554526 CGATTGTGAAGCAACTGTAAAGCA 60.555 41.667 0.00 0.00 40.28 3.91
642 670 7.672983 AGTTTGAAGATTTCGAAGCTATCAA 57.327 32.000 10.18 11.10 33.85 2.57
671 729 4.099881 AGCATGAGAAGAGAGAGATGAACC 59.900 45.833 0.00 0.00 0.00 3.62
687 745 4.549155 CCGGGAGGCTCCTGATAT 57.451 61.111 38.30 0.00 45.95 1.63
688 746 2.765352 CCGGGAGGCTCCTGATATT 58.235 57.895 38.30 0.00 45.95 1.28
689 747 0.322975 CCGGGAGGCTCCTGATATTG 59.677 60.000 38.30 20.41 45.95 1.90
690 748 0.321122 CGGGAGGCTCCTGATATTGC 60.321 60.000 34.54 13.78 45.95 3.56
734 792 3.072211 ACTTTAGAGTTGCTTTACCCGC 58.928 45.455 0.00 0.00 29.87 6.13
735 793 2.843401 TTAGAGTTGCTTTACCCGCA 57.157 45.000 0.00 0.00 35.22 5.69
769 1036 3.381590 AGAGTTTCTTCACAACCAAAGCC 59.618 43.478 0.00 0.00 0.00 4.35
789 1057 1.219393 CCCTGGACTCGAGAAAGCC 59.781 63.158 21.68 14.50 0.00 4.35
790 1058 1.261238 CCCTGGACTCGAGAAAGCCT 61.261 60.000 21.68 0.00 0.00 4.58
791 1059 0.610687 CCTGGACTCGAGAAAGCCTT 59.389 55.000 21.68 0.00 0.00 4.35
792 1060 1.002544 CCTGGACTCGAGAAAGCCTTT 59.997 52.381 21.68 0.00 0.00 3.11
793 1061 2.342179 CTGGACTCGAGAAAGCCTTTC 58.658 52.381 21.68 9.20 39.96 2.62
844 1112 3.544167 CTATCAGGAGGGCGCGTCG 62.544 68.421 8.43 0.00 0.00 5.12
862 1131 1.159285 CGTCCATGTCACAGCACAAT 58.841 50.000 0.00 0.00 0.00 2.71
891 1160 1.967319 TTTTCTCCGCACTTTGCTCT 58.033 45.000 0.00 0.00 42.25 4.09
892 1161 1.512926 TTTCTCCGCACTTTGCTCTC 58.487 50.000 0.00 0.00 42.25 3.20
893 1162 0.320771 TTCTCCGCACTTTGCTCTCC 60.321 55.000 0.00 0.00 42.25 3.71
894 1163 1.004560 CTCCGCACTTTGCTCTCCA 60.005 57.895 0.00 0.00 42.25 3.86
895 1164 0.392193 CTCCGCACTTTGCTCTCCAT 60.392 55.000 0.00 0.00 42.25 3.41
936 1205 1.154543 GGTTGTTCTTTACCGCGCG 60.155 57.895 25.67 25.67 0.00 6.86
1041 1327 0.253044 ACACAGACAGGCAGTGTTGT 59.747 50.000 0.00 2.60 43.71 3.32
1043 1329 1.331756 CACAGACAGGCAGTGTTGTTC 59.668 52.381 4.30 0.00 40.56 3.18
1090 1378 1.513800 CAGTCTCGCTCGAGCACAG 60.514 63.158 34.69 27.86 41.71 3.66
1107 1405 4.217118 AGCACAGATACAAGCTTGGAAAAG 59.783 41.667 29.18 16.89 32.52 2.27
1346 1647 2.210341 GACTCGGACGGGTTCAGACC 62.210 65.000 0.00 0.00 45.75 3.85
1451 1752 4.475135 GGAGGAAGACGGGCAGGC 62.475 72.222 0.00 0.00 0.00 4.85
1529 1830 0.406361 TCCACCCGCCTTGGTATTTT 59.594 50.000 0.00 0.00 36.67 1.82
1530 1831 1.203075 TCCACCCGCCTTGGTATTTTT 60.203 47.619 0.00 0.00 36.67 1.94
1531 1832 2.041350 TCCACCCGCCTTGGTATTTTTA 59.959 45.455 0.00 0.00 36.67 1.52
1540 1841 5.392165 CGCCTTGGTATTTTTACCGATTTGA 60.392 40.000 0.00 0.00 42.95 2.69
1543 1844 7.547722 GCCTTGGTATTTTTACCGATTTGAATT 59.452 33.333 0.00 0.00 42.95 2.17
1595 1901 4.461081 GTGTGTTTGTTTAGCATATGGGGA 59.539 41.667 4.56 0.00 0.00 4.81
1597 1903 6.320164 GTGTGTTTGTTTAGCATATGGGGATA 59.680 38.462 4.56 0.00 0.00 2.59
1620 1926 4.471904 TTGCTTCGGTATTCAGATGAGT 57.528 40.909 0.00 0.00 0.00 3.41
1633 1939 1.911357 AGATGAGTTCCAGGATGCACA 59.089 47.619 0.00 0.00 31.97 4.57
1642 1948 3.018856 TCCAGGATGCACATGATTTGTC 58.981 45.455 0.00 0.00 36.00 3.18
1647 1953 0.880441 TGCACATGATTTGTCCCACG 59.120 50.000 0.00 0.00 36.00 4.94
1677 1983 4.272100 GCAAGTTGCCATTGCCAG 57.728 55.556 17.36 0.00 45.79 4.85
1697 2003 3.129287 CAGCTTTGGGTTATGGTGATGAC 59.871 47.826 0.00 0.00 0.00 3.06
1699 2005 3.378427 GCTTTGGGTTATGGTGATGACTC 59.622 47.826 0.00 0.00 0.00 3.36
1756 2063 4.067896 ACAGATTTGGTAGAGCACAGTTG 58.932 43.478 0.00 0.00 0.00 3.16
1796 2103 4.380843 TCAGGTAATTTTCAGCCCTTGA 57.619 40.909 0.00 0.00 0.00 3.02
1810 2117 1.202222 CCCTTGATTTGCACAGCGATC 60.202 52.381 0.00 0.00 0.00 3.69
1884 2191 1.476007 GGAGCTGATATGGAGGCCGT 61.476 60.000 0.00 0.00 0.00 5.68
1899 2206 1.221840 CCGTGGAGAGAATGGGTGG 59.778 63.158 0.00 0.00 0.00 4.61
1990 2309 0.106419 GTGGAGTTTGGGGTTCACCA 60.106 55.000 0.00 0.00 42.91 4.17
1992 2311 1.179174 GGAGTTTGGGGTTCACCAGC 61.179 60.000 0.00 0.00 42.47 4.85
2068 2387 4.776322 TTGCCTCATGCGACGGGG 62.776 66.667 0.00 0.00 45.60 5.73
2079 2398 3.618750 GACGGGGTGGTGTCGGAA 61.619 66.667 0.00 0.00 0.00 4.30
2113 2432 3.717294 GGGATGGACAGTGGCGGT 61.717 66.667 0.00 0.00 0.00 5.68
2117 2436 2.449031 GATGGACAGTGGCGGTGACA 62.449 60.000 0.00 0.00 0.00 3.58
2203 2530 7.439955 ACGAAATTTCAGTCACATGTGTACTAA 59.560 33.333 24.63 16.94 0.00 2.24
2284 2611 2.203567 CGAGGCCCAAAAACCCCA 60.204 61.111 0.00 0.00 0.00 4.96
2346 2675 6.542821 TCACCTCTTCCAAGTGATGTAAAAT 58.457 36.000 0.00 0.00 35.67 1.82
2348 2677 7.606456 TCACCTCTTCCAAGTGATGTAAAATAC 59.394 37.037 0.00 0.00 35.67 1.89
2351 2680 8.237267 CCTCTTCCAAGTGATGTAAAATACAAC 58.763 37.037 0.00 0.00 42.76 3.32
2352 2681 8.684386 TCTTCCAAGTGATGTAAAATACAACA 57.316 30.769 0.00 0.00 42.76 3.33
2361 2690 8.862325 TGATGTAAAATACAACACTTGGAGAT 57.138 30.769 0.00 0.00 42.76 2.75
2362 2691 8.729756 TGATGTAAAATACAACACTTGGAGATG 58.270 33.333 0.00 0.00 42.76 2.90
2364 2693 6.488344 TGTAAAATACAACACTTGGAGATGCA 59.512 34.615 0.00 0.00 35.38 3.96
2441 4058 1.961277 CGTTCTGCCTGGAAACGCT 60.961 57.895 13.74 0.00 0.00 5.07
2442 4059 1.576421 GTTCTGCCTGGAAACGCTG 59.424 57.895 0.00 0.00 0.00 5.18
2443 4060 1.600636 TTCTGCCTGGAAACGCTGG 60.601 57.895 0.00 0.00 0.00 4.85
2444 4061 3.741476 CTGCCTGGAAACGCTGGC 61.741 66.667 0.00 0.00 41.96 4.85
2480 4097 2.442272 CCGTCCATCCTCGACCCT 60.442 66.667 0.00 0.00 0.00 4.34
2482 4099 2.501610 GTCCATCCTCGACCCTGC 59.498 66.667 0.00 0.00 0.00 4.85
2483 4100 2.764128 TCCATCCTCGACCCTGCC 60.764 66.667 0.00 0.00 0.00 4.85
2484 4101 4.227134 CCATCCTCGACCCTGCCG 62.227 72.222 0.00 0.00 0.00 5.69
2485 4102 4.899239 CATCCTCGACCCTGCCGC 62.899 72.222 0.00 0.00 0.00 6.53
2502 4119 2.731571 GCGACCCCACTGCCTATCA 61.732 63.158 0.00 0.00 0.00 2.15
2515 4132 4.529219 TATCACAGCCGCCAGCCG 62.529 66.667 0.00 0.00 45.47 5.52
2540 4157 3.449227 CTAGCCGCTGACGACCCA 61.449 66.667 2.16 0.00 43.93 4.51
2578 4196 1.597027 CCGACGACCACCTGCTTTT 60.597 57.895 0.00 0.00 0.00 2.27
2808 4572 3.083997 CCGCCTTCCCTGGTAGCT 61.084 66.667 0.00 0.00 0.00 3.32
2997 4923 1.755395 GCTGCCCATCAATGCTCCA 60.755 57.895 0.00 0.00 0.00 3.86
3128 5055 6.990349 AGGAGGTTTACATCACCAAATATACG 59.010 38.462 0.00 0.00 36.67 3.06
3146 5073 1.416401 ACGACATCTGTTGGAGTTGGT 59.584 47.619 2.77 0.00 33.72 3.67
3197 5124 9.627657 CTTTTTGGTGACGTATATTATACAACG 57.372 33.333 12.99 7.21 40.99 4.10
3307 5268 7.963532 AGTGATTGTGTTCTCTTTACTCCTAA 58.036 34.615 0.00 0.00 0.00 2.69
3387 5360 5.680619 TGGGATCATCACAAACCTACATAC 58.319 41.667 0.00 0.00 0.00 2.39
3390 5363 6.349300 GGATCATCACAAACCTACATACACT 58.651 40.000 0.00 0.00 0.00 3.55
3399 5372 4.457834 ACCTACATACACTTGCAGAGAC 57.542 45.455 3.37 0.00 0.00 3.36
3400 5373 3.832490 ACCTACATACACTTGCAGAGACA 59.168 43.478 3.37 0.00 0.00 3.41
3459 5432 2.160205 TCGTGGGTGTTTTGTGAACAA 58.840 42.857 0.00 0.00 31.20 2.83
3460 5433 2.557056 TCGTGGGTGTTTTGTGAACAAA 59.443 40.909 4.52 4.52 43.36 2.83
3461 5434 2.920490 CGTGGGTGTTTTGTGAACAAAG 59.080 45.455 8.49 0.00 45.34 2.77
3462 5435 3.366476 CGTGGGTGTTTTGTGAACAAAGA 60.366 43.478 8.49 0.00 45.34 2.52
3509 5482 8.807118 CATCCACTGCTAAAGTCTATCCTAATA 58.193 37.037 0.00 0.00 36.83 0.98
3692 5665 5.051891 ACAATGAGTAACAGCAGCAATTC 57.948 39.130 0.00 0.00 0.00 2.17
3740 5713 0.453793 TTGGTCACACTGTTTTGCCG 59.546 50.000 0.00 0.00 0.00 5.69
3811 5785 6.166982 ACTAGTCTTTTCAGTTCATACAGCC 58.833 40.000 0.00 0.00 0.00 4.85
3815 5789 5.062308 GTCTTTTCAGTTCATACAGCCGTAG 59.938 44.000 0.00 0.00 0.00 3.51
3878 5856 9.503399 GGGACGATATAATATTTTGGAACTCTT 57.497 33.333 0.00 0.00 0.00 2.85
3946 5924 6.047870 TGTGAAAAATGCTGTTTTGTGCTAT 58.952 32.000 3.12 0.00 30.87 2.97
4224 6220 1.421646 ACTGGCTAGCTTTGGACTTGT 59.578 47.619 15.72 0.00 0.00 3.16
4225 6221 2.158608 ACTGGCTAGCTTTGGACTTGTT 60.159 45.455 15.72 0.00 0.00 2.83
4246 6242 9.385902 CTTGTTGCCATTTATTTGTAGATATCG 57.614 33.333 0.00 0.00 0.00 2.92
4651 9012 5.539955 AGTTTATTTGCTGGAAATGGTGAGT 59.460 36.000 16.15 1.52 35.74 3.41
4718 9079 9.667107 TTAGATCTTAATGAAACAGTTACCTGG 57.333 33.333 0.00 0.00 43.36 4.45
4752 9113 6.476378 ACAATTGTACCAGCTCTAGAAACAT 58.524 36.000 9.97 0.00 0.00 2.71
4756 9117 2.839228 ACCAGCTCTAGAAACATCCCT 58.161 47.619 0.00 0.00 0.00 4.20
4758 9119 3.198853 ACCAGCTCTAGAAACATCCCTTC 59.801 47.826 0.00 0.00 0.00 3.46
4914 9278 7.915923 TCGCGATATCTGATATTTAAGGTGATC 59.084 37.037 3.71 0.00 0.00 2.92
4917 9281 9.029243 CGATATCTGATATTTAAGGTGATCAGC 57.971 37.037 17.19 17.19 43.26 4.26
4925 9295 2.359850 GGTGATCAGCGTGCCCAA 60.360 61.111 9.50 0.00 0.00 4.12
4929 9299 0.810648 TGATCAGCGTGCCCAATTTC 59.189 50.000 0.00 0.00 0.00 2.17
4932 9302 1.255882 TCAGCGTGCCCAATTTCAAT 58.744 45.000 0.00 0.00 0.00 2.57
5061 9441 1.209640 GGGTCTCGTGACGACTGAC 59.790 63.158 16.13 16.13 43.79 3.51
5062 9442 1.235948 GGGTCTCGTGACGACTGACT 61.236 60.000 21.31 0.00 43.79 3.41
5063 9443 0.110147 GGTCTCGTGACGACTGACTG 60.110 60.000 21.31 5.51 43.79 3.51
5154 9534 1.962100 GGAGAGATAACCTGGTACCCG 59.038 57.143 10.07 2.14 0.00 5.28
5164 9544 2.436115 GGTACCCGTGCCTGCTTC 60.436 66.667 0.00 0.00 32.22 3.86
5172 9552 1.866853 CGTGCCTGCTTCCCCTTTTC 61.867 60.000 0.00 0.00 0.00 2.29
5178 9558 0.536460 TGCTTCCCCTTTTCCGACAC 60.536 55.000 0.00 0.00 0.00 3.67
5183 9563 2.952116 TCCCCTTTTCCGACACAAAAT 58.048 42.857 0.00 0.00 0.00 1.82
5242 9625 1.272147 GGCCTTCCTTCAGATTGTGGT 60.272 52.381 0.00 0.00 0.00 4.16
5251 9634 2.507484 TCAGATTGTGGTTGCTTCTGG 58.493 47.619 0.00 0.00 35.60 3.86
5255 9638 3.508793 AGATTGTGGTTGCTTCTGGATTG 59.491 43.478 0.00 0.00 0.00 2.67
5282 9665 4.819105 ACCGAATCCTGTCATTTGACTA 57.181 40.909 11.67 0.00 44.99 2.59
5296 9682 0.806102 TGACTATCGCGCCTTTCTGC 60.806 55.000 0.00 0.00 0.00 4.26
5400 9800 0.953471 TTCAAGCCATCCGTCGTTGG 60.953 55.000 7.01 7.01 36.03 3.77
5435 9835 3.535629 TTCAGGTCAGGTGGCTGCG 62.536 63.158 0.00 0.00 0.00 5.18
5461 9862 0.816373 GTCTCTGTCGTAGGGTTCCC 59.184 60.000 0.00 0.00 0.00 3.97
5462 9863 0.679002 TCTCTGTCGTAGGGTTCCCG 60.679 60.000 1.91 0.00 0.00 5.14
5613 10027 2.159986 GCAACAAATCATGCCGTTTTCG 60.160 45.455 0.00 0.00 43.67 3.46
5617 10031 2.629639 AATCATGCCGTTTTCGTTCC 57.370 45.000 0.00 0.00 42.35 3.62
5622 10036 0.949588 TGCCGTTTTCGTTCCGCATA 60.950 50.000 0.00 0.00 42.35 3.14
5627 10041 3.289911 CGTTTTCGTTCCGCATACAAAA 58.710 40.909 0.00 0.00 38.65 2.44
5686 10103 0.109551 TCTTGCTCTCGCTGTCGAAG 60.110 55.000 0.00 0.00 44.98 3.79
5733 10150 2.438148 CGGCGTGCATTCGTAACGA 61.438 57.895 0.00 0.00 39.64 3.85
5762 10206 1.173913 TCGAACGAGGCATGAGAAGA 58.826 50.000 0.00 0.00 0.00 2.87
5777 10221 5.888982 TGAGAAGAAAGGTAAGGTCAACT 57.111 39.130 0.00 0.00 0.00 3.16
5779 10223 4.974399 AGAAGAAAGGTAAGGTCAACTGG 58.026 43.478 0.00 0.00 0.00 4.00
5796 10240 0.106769 TGGGCAGCTCAGTGTCAAAA 60.107 50.000 0.00 0.00 0.00 2.44
5797 10241 0.312102 GGGCAGCTCAGTGTCAAAAC 59.688 55.000 0.00 0.00 0.00 2.43
5798 10242 1.312815 GGCAGCTCAGTGTCAAAACT 58.687 50.000 0.00 0.00 0.00 2.66
5815 10259 4.868450 AAACTGACGATCGTTTTGAACA 57.132 36.364 23.63 13.22 29.65 3.18
5816 10260 3.854286 ACTGACGATCGTTTTGAACAC 57.146 42.857 23.63 7.29 0.00 3.32
5817 10261 3.454375 ACTGACGATCGTTTTGAACACT 58.546 40.909 23.63 0.66 0.00 3.55
5818 10262 3.245284 ACTGACGATCGTTTTGAACACTG 59.755 43.478 23.63 12.59 0.00 3.66
5821 10280 4.026062 TGACGATCGTTTTGAACACTGAAG 60.026 41.667 23.63 0.00 0.00 3.02
5840 10299 0.387239 GCGTTTTGACCCATCACAGC 60.387 55.000 0.00 0.00 33.38 4.40
5881 10340 1.132453 CCTAAAAGGCGCTTAGTTGGC 59.868 52.381 7.64 0.00 0.00 4.52
5920 10379 0.619255 TCATAGTCGGAAGGGGGCAA 60.619 55.000 0.00 0.00 0.00 4.52
5939 10398 1.308998 ATCGCTTTCCTAAATGGCCG 58.691 50.000 0.00 0.00 35.26 6.13
6020 10479 0.249322 GCGAGGCGGCTATTACAGAA 60.249 55.000 13.24 0.00 0.00 3.02
6069 10531 5.927115 GGGTCGTCCTGATTAATCTATTGAC 59.073 44.000 16.24 15.17 0.00 3.18
6070 10532 6.462487 GGGTCGTCCTGATTAATCTATTGACA 60.462 42.308 16.24 6.29 0.00 3.58
6089 10552 3.660865 ACAGAAGATTGGTACGGACAAC 58.339 45.455 0.00 0.00 0.00 3.32
6118 10582 1.134367 TGAGAAATGAGCCTACCGACG 59.866 52.381 0.00 0.00 0.00 5.12
6120 10584 1.134560 AGAAATGAGCCTACCGACGAC 59.865 52.381 0.00 0.00 0.00 4.34
6121 10585 0.892755 AAATGAGCCTACCGACGACA 59.107 50.000 0.00 0.00 0.00 4.35
6123 10587 1.112113 ATGAGCCTACCGACGACAAT 58.888 50.000 0.00 0.00 0.00 2.71
6126 10590 2.159338 TGAGCCTACCGACGACAATAAC 60.159 50.000 0.00 0.00 0.00 1.89
6127 10591 2.097825 AGCCTACCGACGACAATAACT 58.902 47.619 0.00 0.00 0.00 2.24
6128 10592 2.159282 AGCCTACCGACGACAATAACTG 60.159 50.000 0.00 0.00 0.00 3.16
6129 10593 2.805845 CCTACCGACGACAATAACTGG 58.194 52.381 0.00 0.00 0.00 4.00
6130 10594 2.480759 CCTACCGACGACAATAACTGGG 60.481 54.545 0.00 0.00 0.00 4.45
6132 10596 1.087771 CCGACGACAATAACTGGGCC 61.088 60.000 0.00 0.00 0.00 5.80
6133 10597 0.390603 CGACGACAATAACTGGGCCA 60.391 55.000 5.85 5.85 0.00 5.36
6134 10598 1.816074 GACGACAATAACTGGGCCAA 58.184 50.000 8.04 0.00 0.00 4.52
6135 10599 1.467342 GACGACAATAACTGGGCCAAC 59.533 52.381 8.04 0.00 0.00 3.77
6136 10600 0.446222 CGACAATAACTGGGCCAACG 59.554 55.000 8.04 0.00 0.00 4.10
6137 10601 1.530323 GACAATAACTGGGCCAACGT 58.470 50.000 8.04 0.00 0.00 3.99
6138 10602 1.883926 GACAATAACTGGGCCAACGTT 59.116 47.619 8.04 12.15 0.00 3.99
6142 10634 3.637911 ATAACTGGGCCAACGTTATGA 57.362 42.857 23.13 6.30 33.81 2.15
6156 10648 6.317088 CAACGTTATGAATTCAGTGCATTCT 58.683 36.000 14.54 5.28 32.63 2.40
6157 10649 7.413988 CCAACGTTATGAATTCAGTGCATTCTA 60.414 37.037 14.54 4.20 32.63 2.10
6160 10656 7.010552 ACGTTATGAATTCAGTGCATTCTACTC 59.989 37.037 14.54 4.83 32.63 2.59
6163 10659 6.544928 TGAATTCAGTGCATTCTACTCCTA 57.455 37.500 15.15 0.00 32.63 2.94
6170 10666 3.004524 GTGCATTCTACTCCTACTACCGG 59.995 52.174 0.00 0.00 0.00 5.28
6182 10678 4.073549 CCTACTACCGGTCAAGATAGAGG 58.926 52.174 12.40 7.10 0.00 3.69
6207 10707 5.573219 AGGAATGGTCATCTGTTCAATCAA 58.427 37.500 0.00 0.00 0.00 2.57
6212 10712 6.258230 TGGTCATCTGTTCAATCAATCAAC 57.742 37.500 0.00 0.00 0.00 3.18
6218 10718 8.241367 TCATCTGTTCAATCAATCAACAAGATG 58.759 33.333 0.00 0.00 37.22 2.90
6252 10752 3.304794 GGGACTTCTCGAGATCATAACCG 60.305 52.174 17.44 0.60 0.00 4.44
6255 10755 3.945921 ACTTCTCGAGATCATAACCGTGA 59.054 43.478 17.44 0.00 0.00 4.35
6264 10764 6.744993 CGAGATCATAACCGTGAAGATAGATG 59.255 42.308 0.00 0.00 0.00 2.90
6265 10765 7.361286 CGAGATCATAACCGTGAAGATAGATGA 60.361 40.741 0.00 0.00 0.00 2.92
6266 10766 7.825681 AGATCATAACCGTGAAGATAGATGAG 58.174 38.462 0.00 0.00 0.00 2.90
6267 10767 7.667635 AGATCATAACCGTGAAGATAGATGAGA 59.332 37.037 0.00 0.00 0.00 3.27
6268 10768 7.767250 TCATAACCGTGAAGATAGATGAGAT 57.233 36.000 0.00 0.00 0.00 2.75
6269 10769 8.183104 TCATAACCGTGAAGATAGATGAGATT 57.817 34.615 0.00 0.00 0.00 2.40
6270 10770 8.642432 TCATAACCGTGAAGATAGATGAGATTT 58.358 33.333 0.00 0.00 0.00 2.17
6271 10771 8.920665 CATAACCGTGAAGATAGATGAGATTTC 58.079 37.037 0.00 0.00 0.00 2.17
6272 10772 6.471233 ACCGTGAAGATAGATGAGATTTCA 57.529 37.500 0.00 0.00 37.81 2.69
6273 10773 6.878317 ACCGTGAAGATAGATGAGATTTCAA 58.122 36.000 0.00 0.00 36.78 2.69
6274 10774 6.983307 ACCGTGAAGATAGATGAGATTTCAAG 59.017 38.462 0.00 0.00 36.78 3.02
6275 10775 7.147828 ACCGTGAAGATAGATGAGATTTCAAGA 60.148 37.037 0.00 0.00 36.78 3.02
6276 10776 7.168972 CCGTGAAGATAGATGAGATTTCAAGAC 59.831 40.741 0.00 0.00 36.78 3.01
6277 10777 7.704047 CGTGAAGATAGATGAGATTTCAAGACA 59.296 37.037 0.00 0.00 36.78 3.41
6278 10778 9.033481 GTGAAGATAGATGAGATTTCAAGACAG 57.967 37.037 0.00 0.00 36.78 3.51
6279 10779 8.975295 TGAAGATAGATGAGATTTCAAGACAGA 58.025 33.333 0.00 0.00 36.78 3.41
6280 10780 9.985730 GAAGATAGATGAGATTTCAAGACAGAT 57.014 33.333 0.00 0.00 36.78 2.90
6285 10785 7.725251 AGATGAGATTTCAAGACAGATAGACC 58.275 38.462 0.00 0.00 36.78 3.85
6286 10786 7.564660 AGATGAGATTTCAAGACAGATAGACCT 59.435 37.037 0.00 0.00 36.78 3.85
6287 10787 8.774546 ATGAGATTTCAAGACAGATAGACCTA 57.225 34.615 0.00 0.00 36.78 3.08
6288 10788 8.001881 TGAGATTTCAAGACAGATAGACCTAC 57.998 38.462 0.00 0.00 0.00 3.18
6289 10789 7.068839 TGAGATTTCAAGACAGATAGACCTACC 59.931 40.741 0.00 0.00 0.00 3.18
6290 10790 6.897966 AGATTTCAAGACAGATAGACCTACCA 59.102 38.462 0.00 0.00 0.00 3.25
6291 10791 6.531503 TTTCAAGACAGATAGACCTACCAG 57.468 41.667 0.00 0.00 0.00 4.00
6292 10792 3.954904 TCAAGACAGATAGACCTACCAGC 59.045 47.826 0.00 0.00 0.00 4.85
6293 10793 3.671740 AGACAGATAGACCTACCAGCA 57.328 47.619 0.00 0.00 0.00 4.41
6294 10794 3.982516 AGACAGATAGACCTACCAGCAA 58.017 45.455 0.00 0.00 0.00 3.91
6295 10795 4.353777 AGACAGATAGACCTACCAGCAAA 58.646 43.478 0.00 0.00 0.00 3.68
6296 10796 4.777896 AGACAGATAGACCTACCAGCAAAA 59.222 41.667 0.00 0.00 0.00 2.44
6297 10797 5.426833 AGACAGATAGACCTACCAGCAAAAT 59.573 40.000 0.00 0.00 0.00 1.82
6298 10798 6.611642 AGACAGATAGACCTACCAGCAAAATA 59.388 38.462 0.00 0.00 0.00 1.40
6299 10799 6.821388 ACAGATAGACCTACCAGCAAAATAG 58.179 40.000 0.00 0.00 0.00 1.73
6300 10800 6.183361 ACAGATAGACCTACCAGCAAAATAGG 60.183 42.308 0.00 0.00 41.21 2.57
6301 10801 3.283259 AGACCTACCAGCAAAATAGGC 57.717 47.619 0.00 0.00 39.36 3.93
6302 10802 2.846827 AGACCTACCAGCAAAATAGGCT 59.153 45.455 0.00 0.00 43.77 4.58
6303 10803 3.267031 AGACCTACCAGCAAAATAGGCTT 59.733 43.478 0.00 0.00 40.23 4.35
6304 10804 3.356290 ACCTACCAGCAAAATAGGCTTG 58.644 45.455 0.00 0.00 40.23 4.01
6305 10805 2.689983 CCTACCAGCAAAATAGGCTTGG 59.310 50.000 0.00 0.00 40.23 3.61
6306 10806 0.897621 ACCAGCAAAATAGGCTTGGC 59.102 50.000 0.00 0.00 40.23 4.52
6307 10807 0.896923 CCAGCAAAATAGGCTTGGCA 59.103 50.000 0.00 0.00 40.23 4.92
6308 10808 1.404583 CCAGCAAAATAGGCTTGGCAC 60.405 52.381 0.00 0.00 40.23 5.01
6309 10809 1.547372 CAGCAAAATAGGCTTGGCACT 59.453 47.619 0.00 0.00 40.23 4.40
6310 10810 1.547372 AGCAAAATAGGCTTGGCACTG 59.453 47.619 0.00 0.00 38.81 3.66
6311 10811 1.404583 GCAAAATAGGCTTGGCACTGG 60.405 52.381 0.00 0.00 0.00 4.00
6312 10812 0.897621 AAAATAGGCTTGGCACTGGC 59.102 50.000 0.00 5.30 40.13 4.85
6313 10813 1.315257 AAATAGGCTTGGCACTGGCG 61.315 55.000 0.00 0.00 42.47 5.69
6314 10814 3.704231 ATAGGCTTGGCACTGGCGG 62.704 63.158 0.00 0.00 42.47 6.13
6323 10823 3.402681 CACTGGCGGGGACATCCT 61.403 66.667 0.00 0.00 35.95 3.24
6324 10824 2.063979 CACTGGCGGGGACATCCTA 61.064 63.158 0.00 0.00 35.95 2.94
6325 10825 2.064581 ACTGGCGGGGACATCCTAC 61.065 63.158 0.00 0.00 35.95 3.18
6326 10826 1.762460 CTGGCGGGGACATCCTACT 60.762 63.158 0.00 0.00 35.95 2.57
6327 10827 2.032860 CTGGCGGGGACATCCTACTG 62.033 65.000 0.00 0.00 35.95 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.904834 TGAGTATAGGAGTTACAAGAGTTGATC 58.095 37.037 0.00 0.00 0.00 2.92
5 6 8.824756 TGAGTATAGGAGTTACAAGAGTTGAT 57.175 34.615 0.00 0.00 0.00 2.57
6 7 8.824756 ATGAGTATAGGAGTTACAAGAGTTGA 57.175 34.615 0.00 0.00 0.00 3.18
7 8 8.687242 TGATGAGTATAGGAGTTACAAGAGTTG 58.313 37.037 0.00 0.00 0.00 3.16
8 9 8.824756 TGATGAGTATAGGAGTTACAAGAGTT 57.175 34.615 0.00 0.00 0.00 3.01
9 10 8.824756 TTGATGAGTATAGGAGTTACAAGAGT 57.175 34.615 0.00 0.00 0.00 3.24
10 11 9.743057 CTTTGATGAGTATAGGAGTTACAAGAG 57.257 37.037 0.00 0.00 0.00 2.85
11 12 9.256228 ACTTTGATGAGTATAGGAGTTACAAGA 57.744 33.333 0.00 0.00 0.00 3.02
12 13 9.522804 GACTTTGATGAGTATAGGAGTTACAAG 57.477 37.037 0.00 0.00 0.00 3.16
13 14 9.031537 TGACTTTGATGAGTATAGGAGTTACAA 57.968 33.333 0.00 0.00 0.00 2.41
14 15 8.589701 TGACTTTGATGAGTATAGGAGTTACA 57.410 34.615 0.00 0.00 0.00 2.41
17 18 8.762645 TGATTGACTTTGATGAGTATAGGAGTT 58.237 33.333 0.00 0.00 0.00 3.01
18 19 8.311395 TGATTGACTTTGATGAGTATAGGAGT 57.689 34.615 0.00 0.00 0.00 3.85
19 20 9.258826 CTTGATTGACTTTGATGAGTATAGGAG 57.741 37.037 0.00 0.00 0.00 3.69
20 21 7.712639 GCTTGATTGACTTTGATGAGTATAGGA 59.287 37.037 0.00 0.00 0.00 2.94
21 22 7.496920 TGCTTGATTGACTTTGATGAGTATAGG 59.503 37.037 0.00 0.00 0.00 2.57
22 23 8.429493 TGCTTGATTGACTTTGATGAGTATAG 57.571 34.615 0.00 0.00 0.00 1.31
23 24 7.496920 CCTGCTTGATTGACTTTGATGAGTATA 59.503 37.037 0.00 0.00 0.00 1.47
24 25 6.318144 CCTGCTTGATTGACTTTGATGAGTAT 59.682 38.462 0.00 0.00 0.00 2.12
25 26 5.645067 CCTGCTTGATTGACTTTGATGAGTA 59.355 40.000 0.00 0.00 0.00 2.59
26 27 4.458295 CCTGCTTGATTGACTTTGATGAGT 59.542 41.667 0.00 0.00 0.00 3.41
27 28 4.698780 TCCTGCTTGATTGACTTTGATGAG 59.301 41.667 0.00 0.00 0.00 2.90
28 29 4.654915 TCCTGCTTGATTGACTTTGATGA 58.345 39.130 0.00 0.00 0.00 2.92
29 30 5.048224 ACTTCCTGCTTGATTGACTTTGATG 60.048 40.000 0.00 0.00 0.00 3.07
30 31 5.075493 ACTTCCTGCTTGATTGACTTTGAT 58.925 37.500 0.00 0.00 0.00 2.57
31 32 4.464008 ACTTCCTGCTTGATTGACTTTGA 58.536 39.130 0.00 0.00 0.00 2.69
32 33 4.843220 ACTTCCTGCTTGATTGACTTTG 57.157 40.909 0.00 0.00 0.00 2.77
33 34 5.006386 CCTACTTCCTGCTTGATTGACTTT 58.994 41.667 0.00 0.00 0.00 2.66
34 35 4.566488 CCCTACTTCCTGCTTGATTGACTT 60.566 45.833 0.00 0.00 0.00 3.01
35 36 3.054802 CCCTACTTCCTGCTTGATTGACT 60.055 47.826 0.00 0.00 0.00 3.41
36 37 3.274288 CCCTACTTCCTGCTTGATTGAC 58.726 50.000 0.00 0.00 0.00 3.18
37 38 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
38 39 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
39 40 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
40 41 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
41 42 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
42 43 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
43 44 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
44 45 4.224762 GAGGTAATACCCTACTTCCTGCT 58.775 47.826 5.71 0.00 39.75 4.24
45 46 3.324268 GGAGGTAATACCCTACTTCCTGC 59.676 52.174 5.71 0.00 42.18 4.85
46 47 4.553678 TGGAGGTAATACCCTACTTCCTG 58.446 47.826 13.63 0.00 44.50 3.86
47 48 4.913154 TGGAGGTAATACCCTACTTCCT 57.087 45.455 13.63 0.00 44.50 3.36
48 49 7.511714 TCTTAATGGAGGTAATACCCTACTTCC 59.488 40.741 5.71 6.77 44.47 3.46
49 50 8.488308 TCTTAATGGAGGTAATACCCTACTTC 57.512 38.462 5.71 0.00 39.75 3.01
50 51 7.513091 CCTCTTAATGGAGGTAATACCCTACTT 59.487 40.741 5.71 0.00 45.65 2.24
51 52 7.017531 CCTCTTAATGGAGGTAATACCCTACT 58.982 42.308 5.71 0.00 45.65 2.57
52 53 7.242322 CCTCTTAATGGAGGTAATACCCTAC 57.758 44.000 5.71 0.00 45.65 3.18
64 65 0.837272 TTCGGGCCCTCTTAATGGAG 59.163 55.000 22.43 0.00 0.00 3.86
65 66 0.544697 GTTCGGGCCCTCTTAATGGA 59.455 55.000 22.43 3.53 0.00 3.41
66 67 0.465642 GGTTCGGGCCCTCTTAATGG 60.466 60.000 22.43 0.54 0.00 3.16
67 68 0.546598 AGGTTCGGGCCCTCTTAATG 59.453 55.000 22.43 1.43 0.00 1.90
68 69 0.546598 CAGGTTCGGGCCCTCTTAAT 59.453 55.000 22.43 0.00 0.00 1.40
69 70 1.559065 CCAGGTTCGGGCCCTCTTAA 61.559 60.000 22.43 5.89 0.00 1.85
70 71 1.993391 CCAGGTTCGGGCCCTCTTA 60.993 63.158 22.43 0.00 0.00 2.10
71 72 3.330720 CCAGGTTCGGGCCCTCTT 61.331 66.667 22.43 3.59 0.00 2.85
79 80 1.338389 ACGATGTTTACCCAGGTTCGG 60.338 52.381 11.39 0.00 30.52 4.30
80 81 1.730064 CACGATGTTTACCCAGGTTCG 59.270 52.381 6.36 6.36 31.96 3.95
81 82 2.740447 GACACGATGTTTACCCAGGTTC 59.260 50.000 0.00 0.00 0.00 3.62
82 83 2.551504 GGACACGATGTTTACCCAGGTT 60.552 50.000 0.00 0.00 0.00 3.50
83 84 1.002773 GGACACGATGTTTACCCAGGT 59.997 52.381 0.00 0.00 0.00 4.00
84 85 1.677820 GGGACACGATGTTTACCCAGG 60.678 57.143 0.00 0.00 37.50 4.45
85 86 1.278127 AGGGACACGATGTTTACCCAG 59.722 52.381 0.00 0.00 39.73 4.45
86 87 1.354101 AGGGACACGATGTTTACCCA 58.646 50.000 0.00 0.00 39.73 4.51
87 88 2.081462 CAAGGGACACGATGTTTACCC 58.919 52.381 0.00 0.00 37.79 3.69
88 89 2.740447 GACAAGGGACACGATGTTTACC 59.260 50.000 0.00 0.00 0.00 2.85
89 90 3.660865 AGACAAGGGACACGATGTTTAC 58.339 45.455 0.00 0.00 0.00 2.01
90 91 3.306502 GGAGACAAGGGACACGATGTTTA 60.307 47.826 0.00 0.00 0.00 2.01
91 92 2.550208 GGAGACAAGGGACACGATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
92 93 1.002087 GGAGACAAGGGACACGATGTT 59.998 52.381 0.00 0.00 0.00 2.71
93 94 0.608640 GGAGACAAGGGACACGATGT 59.391 55.000 0.00 0.00 0.00 3.06
94 95 0.898320 AGGAGACAAGGGACACGATG 59.102 55.000 0.00 0.00 0.00 3.84
95 96 0.898320 CAGGAGACAAGGGACACGAT 59.102 55.000 0.00 0.00 0.00 3.73
96 97 0.469331 ACAGGAGACAAGGGACACGA 60.469 55.000 0.00 0.00 0.00 4.35
97 98 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
98 99 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
99 100 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
100 101 2.258109 AGGTAACAGGAGACAAGGGAC 58.742 52.381 0.00 0.00 41.41 4.46
101 102 2.715763 AGGTAACAGGAGACAAGGGA 57.284 50.000 0.00 0.00 41.41 4.20
102 103 2.353803 CGAAGGTAACAGGAGACAAGGG 60.354 54.545 0.00 0.00 41.41 3.95
103 104 2.561419 TCGAAGGTAACAGGAGACAAGG 59.439 50.000 0.00 0.00 41.41 3.61
104 105 3.936372 TCGAAGGTAACAGGAGACAAG 57.064 47.619 0.00 0.00 41.41 3.16
105 106 4.087182 AGATCGAAGGTAACAGGAGACAA 58.913 43.478 0.00 0.00 41.41 3.18
106 107 3.698289 AGATCGAAGGTAACAGGAGACA 58.302 45.455 0.00 0.00 41.41 3.41
107 108 4.158025 TGAAGATCGAAGGTAACAGGAGAC 59.842 45.833 0.00 0.00 41.41 3.36
108 109 4.341487 TGAAGATCGAAGGTAACAGGAGA 58.659 43.478 0.00 0.00 41.41 3.71
109 110 4.399618 TCTGAAGATCGAAGGTAACAGGAG 59.600 45.833 0.00 0.00 41.41 3.69
110 111 4.158025 GTCTGAAGATCGAAGGTAACAGGA 59.842 45.833 0.00 0.00 41.41 3.86
111 112 4.425520 GTCTGAAGATCGAAGGTAACAGG 58.574 47.826 0.00 0.00 41.41 4.00
112 113 4.099120 CGTCTGAAGATCGAAGGTAACAG 58.901 47.826 0.00 0.00 41.41 3.16
113 114 3.672511 GCGTCTGAAGATCGAAGGTAACA 60.673 47.826 0.00 0.00 41.41 2.41
114 115 2.853003 GCGTCTGAAGATCGAAGGTAAC 59.147 50.000 0.00 0.00 0.00 2.50
115 116 2.490509 TGCGTCTGAAGATCGAAGGTAA 59.509 45.455 0.00 0.00 0.00 2.85
116 117 2.089201 TGCGTCTGAAGATCGAAGGTA 58.911 47.619 0.00 0.00 0.00 3.08
117 118 0.888619 TGCGTCTGAAGATCGAAGGT 59.111 50.000 0.00 0.00 0.00 3.50
118 119 1.272781 GTGCGTCTGAAGATCGAAGG 58.727 55.000 0.00 0.00 0.00 3.46
119 120 1.916651 CTGTGCGTCTGAAGATCGAAG 59.083 52.381 0.00 0.00 0.00 3.79
120 121 1.269723 ACTGTGCGTCTGAAGATCGAA 59.730 47.619 0.00 0.00 0.00 3.71
121 122 0.881796 ACTGTGCGTCTGAAGATCGA 59.118 50.000 0.00 0.00 0.00 3.59
122 123 1.651138 GAACTGTGCGTCTGAAGATCG 59.349 52.381 0.00 0.00 0.00 3.69
123 124 1.651138 CGAACTGTGCGTCTGAAGATC 59.349 52.381 0.00 0.00 0.00 2.75
124 125 1.670087 CCGAACTGTGCGTCTGAAGAT 60.670 52.381 7.51 0.00 0.00 2.40
125 126 0.318699 CCGAACTGTGCGTCTGAAGA 60.319 55.000 7.51 0.00 0.00 2.87
126 127 1.284982 CCCGAACTGTGCGTCTGAAG 61.285 60.000 7.51 0.00 0.00 3.02
127 128 1.300620 CCCGAACTGTGCGTCTGAA 60.301 57.895 7.51 0.00 0.00 3.02
128 129 2.197605 TCCCGAACTGTGCGTCTGA 61.198 57.895 7.51 0.00 0.00 3.27
129 130 2.022129 GTCCCGAACTGTGCGTCTG 61.022 63.158 7.51 0.00 0.00 3.51
130 131 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
131 132 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
132 133 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
134 135 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
143 144 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
144 145 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
145 146 1.902432 CGATCTCGGGTAGGGGGTC 60.902 68.421 0.00 0.00 35.37 4.46
146 147 2.197875 CGATCTCGGGTAGGGGGT 59.802 66.667 0.00 0.00 35.37 4.95
156 157 1.447140 TCAAAACCGGCCGATCTCG 60.447 57.895 30.73 12.43 39.44 4.04
157 158 0.672401 TGTCAAAACCGGCCGATCTC 60.672 55.000 30.73 10.48 0.00 2.75
158 159 0.953960 GTGTCAAAACCGGCCGATCT 60.954 55.000 30.73 7.34 0.00 2.75
159 160 1.500396 GTGTCAAAACCGGCCGATC 59.500 57.895 30.73 8.82 0.00 3.69
160 161 1.969589 GGTGTCAAAACCGGCCGAT 60.970 57.895 30.73 6.36 0.00 4.18
161 162 2.592287 GGTGTCAAAACCGGCCGA 60.592 61.111 30.73 0.90 0.00 5.54
167 168 1.096416 TGGTTGTCGGTGTCAAAACC 58.904 50.000 0.00 0.00 40.59 3.27
168 169 1.530236 CGTGGTTGTCGGTGTCAAAAC 60.530 52.381 0.00 0.00 0.00 2.43
169 170 0.727970 CGTGGTTGTCGGTGTCAAAA 59.272 50.000 0.00 0.00 0.00 2.44
170 171 0.391395 ACGTGGTTGTCGGTGTCAAA 60.391 50.000 0.00 0.00 0.00 2.69
171 172 0.806884 GACGTGGTTGTCGGTGTCAA 60.807 55.000 0.00 0.00 0.00 3.18
172 173 1.227031 GACGTGGTTGTCGGTGTCA 60.227 57.895 0.00 0.00 0.00 3.58
173 174 0.599204 ATGACGTGGTTGTCGGTGTC 60.599 55.000 0.00 0.00 41.87 3.67
174 175 0.878523 CATGACGTGGTTGTCGGTGT 60.879 55.000 0.00 0.00 41.87 4.16
175 176 0.878523 ACATGACGTGGTTGTCGGTG 60.879 55.000 0.00 0.00 41.87 4.94
176 177 0.878523 CACATGACGTGGTTGTCGGT 60.879 55.000 0.00 0.00 42.34 4.69
177 178 1.859398 CACATGACGTGGTTGTCGG 59.141 57.895 0.00 0.00 42.34 4.79
178 179 0.934496 AACACATGACGTGGTTGTCG 59.066 50.000 0.00 0.00 45.97 4.35
179 180 1.002900 CCAACACATGACGTGGTTGTC 60.003 52.381 19.16 0.00 45.97 3.18
180 181 1.021202 CCAACACATGACGTGGTTGT 58.979 50.000 19.16 6.66 45.97 3.32
181 182 0.317770 GCCAACACATGACGTGGTTG 60.318 55.000 16.17 16.17 45.97 3.77
182 183 0.465460 AGCCAACACATGACGTGGTT 60.465 50.000 0.00 0.00 45.97 3.67
231 232 2.173569 ACCACCAGGAGGCTAATTGATC 59.826 50.000 2.09 0.00 39.06 2.92
257 258 6.098695 AGCAACTATTGTGAAATTATGGCCAT 59.901 34.615 24.45 24.45 0.00 4.40
258 259 5.421693 AGCAACTATTGTGAAATTATGGCCA 59.578 36.000 8.56 8.56 0.00 5.36
259 260 5.906073 AGCAACTATTGTGAAATTATGGCC 58.094 37.500 0.00 0.00 0.00 5.36
260 261 5.682862 CGAGCAACTATTGTGAAATTATGGC 59.317 40.000 0.00 0.00 0.00 4.40
261 262 6.688385 CACGAGCAACTATTGTGAAATTATGG 59.312 38.462 0.00 0.00 32.39 2.74
262 263 7.243487 ACACGAGCAACTATTGTGAAATTATG 58.757 34.615 0.00 0.00 34.72 1.90
263 264 7.119116 TGACACGAGCAACTATTGTGAAATTAT 59.881 33.333 0.00 0.00 34.72 1.28
264 265 6.425417 TGACACGAGCAACTATTGTGAAATTA 59.575 34.615 0.00 0.00 34.72 1.40
282 283 0.466372 TGGGTTTTGGCATGACACGA 60.466 50.000 0.00 0.00 0.00 4.35
294 295 5.350504 TCAATGTGTCAATGTTGGGTTTT 57.649 34.783 0.00 0.00 0.00 2.43
304 305 3.337358 TGTCGAGCATCAATGTGTCAAT 58.663 40.909 0.00 0.00 33.17 2.57
306 307 2.453983 TGTCGAGCATCAATGTGTCA 57.546 45.000 0.00 0.00 33.17 3.58
320 321 0.535335 GTGCCCCTATCACTTGTCGA 59.465 55.000 0.00 0.00 0.00 4.20
351 352 3.342377 TTTATGCCAAGGACATCGTGA 57.658 42.857 0.00 0.00 0.00 4.35
356 357 3.245586 TGGACCTTTTATGCCAAGGACAT 60.246 43.478 5.70 0.00 43.32 3.06
369 370 5.449553 GGAAGATACATGGATGGACCTTTT 58.550 41.667 0.00 0.00 39.86 2.27
412 413 1.912043 ACTGCTGAAGCTCCCAATAGT 59.088 47.619 3.61 0.00 42.66 2.12
413 414 2.093288 TCACTGCTGAAGCTCCCAATAG 60.093 50.000 3.61 0.00 42.66 1.73
415 416 0.694771 TCACTGCTGAAGCTCCCAAT 59.305 50.000 3.61 0.00 42.66 3.16
426 427 0.524862 GCCCTGAACATTCACTGCTG 59.475 55.000 0.00 0.00 32.90 4.41
430 431 1.145738 ACTTGGCCCTGAACATTCACT 59.854 47.619 0.00 0.00 32.90 3.41
435 436 1.915141 CTCAACTTGGCCCTGAACAT 58.085 50.000 0.00 0.00 0.00 2.71
436 437 0.823356 GCTCAACTTGGCCCTGAACA 60.823 55.000 0.00 0.00 0.00 3.18
456 457 1.956477 CCATAGCTTCCAAAATCCCCG 59.044 52.381 0.00 0.00 0.00 5.73
504 505 6.617371 AGGTATCCTTCTGGTGTAAAGATCAT 59.383 38.462 0.00 0.00 34.23 2.45
517 518 0.824109 TCGCCACAGGTATCCTTCTG 59.176 55.000 0.00 0.00 37.07 3.02
538 539 3.908382 GCTTTACAGTTGCTTCACAATCG 59.092 43.478 0.00 0.00 41.27 3.34
561 586 1.133792 CCAAATATGGGCTCTTCGGGT 60.134 52.381 0.00 0.00 43.51 5.28
642 670 8.484575 TCATCTCTCTCTTCTCATGCTAAAAAT 58.515 33.333 0.00 0.00 0.00 1.82
671 729 0.321122 GCAATATCAGGAGCCTCCCG 60.321 60.000 7.26 0.00 37.19 5.14
681 739 6.019720 CGCTCTAGCAATATCAGCAATATCAG 60.020 42.308 2.44 0.00 42.21 2.90
682 740 5.809051 CGCTCTAGCAATATCAGCAATATCA 59.191 40.000 2.44 0.00 42.21 2.15
683 741 5.809562 ACGCTCTAGCAATATCAGCAATATC 59.190 40.000 2.44 0.00 42.21 1.63
684 742 5.579904 CACGCTCTAGCAATATCAGCAATAT 59.420 40.000 2.44 0.00 42.21 1.28
685 743 4.925646 CACGCTCTAGCAATATCAGCAATA 59.074 41.667 2.44 0.00 42.21 1.90
686 744 3.744942 CACGCTCTAGCAATATCAGCAAT 59.255 43.478 2.44 0.00 42.21 3.56
687 745 3.126073 CACGCTCTAGCAATATCAGCAA 58.874 45.455 2.44 0.00 42.21 3.91
688 746 2.101415 ACACGCTCTAGCAATATCAGCA 59.899 45.455 2.44 0.00 42.21 4.41
689 747 2.748605 ACACGCTCTAGCAATATCAGC 58.251 47.619 2.44 0.00 42.21 4.26
690 748 4.860072 TGTACACGCTCTAGCAATATCAG 58.140 43.478 2.44 0.00 42.21 2.90
742 800 7.628580 GCTTTGGTTGTGAAGAAACTCTAAAGT 60.629 37.037 0.00 0.00 37.32 2.66
746 804 4.578928 GGCTTTGGTTGTGAAGAAACTCTA 59.421 41.667 0.00 0.00 0.00 2.43
748 806 3.706698 GGCTTTGGTTGTGAAGAAACTC 58.293 45.455 0.00 0.00 0.00 3.01
751 1018 1.202359 GCGGCTTTGGTTGTGAAGAAA 60.202 47.619 0.00 0.00 0.00 2.52
769 1036 1.153745 CTTTCTCGAGTCCAGGGCG 60.154 63.158 13.13 0.00 0.00 6.13
805 1073 9.793259 TGATAGAAAGGCTTTCTCTTCTAAAAA 57.207 29.630 38.01 21.84 46.62 1.94
806 1074 9.442047 CTGATAGAAAGGCTTTCTCTTCTAAAA 57.558 33.333 38.01 22.48 46.62 1.52
807 1075 8.043710 CCTGATAGAAAGGCTTTCTCTTCTAAA 58.956 37.037 38.01 23.13 46.62 1.85
808 1076 7.400339 TCCTGATAGAAAGGCTTTCTCTTCTAA 59.600 37.037 38.01 23.77 46.62 2.10
809 1077 6.897966 TCCTGATAGAAAGGCTTTCTCTTCTA 59.102 38.462 38.01 24.41 46.62 2.10
810 1078 5.723887 TCCTGATAGAAAGGCTTTCTCTTCT 59.276 40.000 38.01 23.78 46.62 2.85
811 1079 5.983540 TCCTGATAGAAAGGCTTTCTCTTC 58.016 41.667 38.01 32.50 46.62 2.87
812 1080 5.104569 CCTCCTGATAGAAAGGCTTTCTCTT 60.105 44.000 38.01 28.15 46.62 2.85
813 1081 4.408596 CCTCCTGATAGAAAGGCTTTCTCT 59.591 45.833 38.01 30.50 46.62 3.10
814 1082 4.444164 CCCTCCTGATAGAAAGGCTTTCTC 60.444 50.000 38.01 27.20 46.62 2.87
816 1084 3.814625 CCCTCCTGATAGAAAGGCTTTC 58.185 50.000 28.32 28.32 39.96 2.62
817 1085 2.092158 GCCCTCCTGATAGAAAGGCTTT 60.092 50.000 13.25 13.25 34.10 3.51
818 1086 1.492599 GCCCTCCTGATAGAAAGGCTT 59.507 52.381 0.00 0.00 34.10 4.35
819 1087 1.135960 GCCCTCCTGATAGAAAGGCT 58.864 55.000 0.00 0.00 34.10 4.58
820 1088 0.250081 CGCCCTCCTGATAGAAAGGC 60.250 60.000 0.00 0.00 34.56 4.35
821 1089 0.250081 GCGCCCTCCTGATAGAAAGG 60.250 60.000 0.00 0.00 36.02 3.11
844 1112 1.401931 GCATTGTGCTGTGACATGGAC 60.402 52.381 0.00 0.00 40.96 4.02
846 1114 0.108992 GGCATTGTGCTGTGACATGG 60.109 55.000 0.00 0.00 44.28 3.66
848 1116 1.588824 CGGGCATTGTGCTGTGACAT 61.589 55.000 1.64 0.00 44.28 3.06
849 1117 2.260154 CGGGCATTGTGCTGTGACA 61.260 57.895 1.64 0.00 44.28 3.58
850 1118 2.187599 GACGGGCATTGTGCTGTGAC 62.188 60.000 1.64 0.00 44.28 3.67
851 1119 1.965930 GACGGGCATTGTGCTGTGA 60.966 57.895 1.64 0.00 44.28 3.58
852 1120 1.588824 ATGACGGGCATTGTGCTGTG 61.589 55.000 0.00 0.00 44.28 3.66
862 1131 1.582610 GCGGAGAAAAATGACGGGCA 61.583 55.000 0.00 0.00 0.00 5.36
891 1160 2.873245 GCTTGTTCTCTGCTGTGATGGA 60.873 50.000 0.00 0.00 0.00 3.41
892 1161 1.467734 GCTTGTTCTCTGCTGTGATGG 59.532 52.381 0.00 0.00 0.00 3.51
893 1162 1.467734 GGCTTGTTCTCTGCTGTGATG 59.532 52.381 0.00 0.00 0.00 3.07
894 1163 1.612726 GGGCTTGTTCTCTGCTGTGAT 60.613 52.381 0.00 0.00 0.00 3.06
895 1164 0.250467 GGGCTTGTTCTCTGCTGTGA 60.250 55.000 0.00 0.00 0.00 3.58
936 1205 4.432741 GGCTGGTTGAGAGGGGCC 62.433 72.222 0.00 0.00 0.00 5.80
1090 1378 8.090831 AGATTTTTCCTTTTCCAAGCTTGTATC 58.909 33.333 24.35 9.23 0.00 2.24
1107 1405 1.950216 GGAGCCATCGGAGATTTTTCC 59.050 52.381 0.00 0.00 45.12 3.13
1346 1647 1.671901 GGGCTTCTCGGAGACCAGAG 61.672 65.000 7.33 3.63 44.80 3.35
1511 1812 1.262417 AAAAATACCAAGGCGGGTGG 58.738 50.000 13.23 8.51 42.39 4.61
1529 1830 6.371548 CAGACTCCTTGAATTCAAATCGGTAA 59.628 38.462 20.82 4.68 35.15 2.85
1530 1831 5.874810 CAGACTCCTTGAATTCAAATCGGTA 59.125 40.000 20.82 8.83 35.15 4.02
1531 1832 4.697352 CAGACTCCTTGAATTCAAATCGGT 59.303 41.667 20.82 15.93 35.15 4.69
1540 1841 4.202398 TGAGCAAGACAGACTCCTTGAATT 60.202 41.667 14.95 3.51 41.56 2.17
1543 1844 2.319844 TGAGCAAGACAGACTCCTTGA 58.680 47.619 14.95 0.00 41.56 3.02
1595 1901 7.220030 ACTCATCTGAATACCGAAGCAATTAT 58.780 34.615 0.00 0.00 0.00 1.28
1597 1903 5.431765 ACTCATCTGAATACCGAAGCAATT 58.568 37.500 0.00 0.00 0.00 2.32
1620 1926 3.433343 ACAAATCATGTGCATCCTGGAA 58.567 40.909 0.00 0.00 41.93 3.53
1633 1939 3.417069 TCTGAACGTGGGACAAATCAT 57.583 42.857 0.00 0.00 44.16 2.45
1642 1948 1.403679 TGCTTGTTTTCTGAACGTGGG 59.596 47.619 0.00 0.00 0.00 4.61
1647 1953 3.306973 GGCAACTTGCTTGTTTTCTGAAC 59.693 43.478 13.43 0.00 44.28 3.18
1677 1983 3.356290 AGTCATCACCATAACCCAAAGC 58.644 45.455 0.00 0.00 0.00 3.51
1699 2005 4.052159 ACTCGATATCAAACTCCAGCAG 57.948 45.455 3.12 0.00 0.00 4.24
1852 2159 2.657944 GCTCCATCTCGCAGCTCG 60.658 66.667 0.00 0.00 40.15 5.03
1884 2191 0.846427 AAGGCCACCCATTCTCTCCA 60.846 55.000 5.01 0.00 0.00 3.86
1899 2206 1.322442 AACAACCTCTTCAGCAAGGC 58.678 50.000 0.00 0.00 36.01 4.35
1963 2270 1.271597 CCCCAAACTCCACTCAGAAGG 60.272 57.143 0.00 0.00 0.00 3.46
1990 2309 1.620739 ATGAGTGCATCTCGGGTGCT 61.621 55.000 10.48 0.00 45.46 4.40
1992 2311 2.686602 CATGAGTGCATCTCGGGTG 58.313 57.895 10.41 6.73 45.46 4.61
2058 2377 4.388499 GACACCACCCCGTCGCAT 62.388 66.667 0.00 0.00 0.00 4.73
2068 2387 3.047877 CCCGCTTTCCGACACCAC 61.048 66.667 0.00 0.00 40.02 4.16
2079 2398 1.004918 CCTTCTCGTCAACCCGCTT 60.005 57.895 0.00 0.00 0.00 4.68
2113 2432 4.111016 CCGTAGTCGCCGCTGTCA 62.111 66.667 0.00 0.00 35.54 3.58
2117 2436 4.790962 TCTCCCGTAGTCGCCGCT 62.791 66.667 0.00 0.00 35.54 5.52
2122 2441 2.518825 CCCCCTCTCCCGTAGTCG 60.519 72.222 0.00 0.00 0.00 4.18
2203 2530 3.304829 GGAGATGCTCTAAGGAACCTCT 58.695 50.000 0.00 0.00 0.00 3.69
2284 2611 5.300411 TGCATCTACATCATCTGTTGGAT 57.700 39.130 0.00 0.00 39.39 3.41
2314 2642 6.542821 TCACTTGGAAGAGGTGATGTAAATT 58.457 36.000 0.00 0.00 35.44 1.82
2315 2643 6.126863 TCACTTGGAAGAGGTGATGTAAAT 57.873 37.500 0.00 0.00 35.44 1.40
2316 2644 5.560722 TCACTTGGAAGAGGTGATGTAAA 57.439 39.130 0.00 0.00 35.44 2.01
2346 2675 4.275689 CAGTTTGCATCTCCAAGTGTTGTA 59.724 41.667 0.00 0.00 0.00 2.41
2348 2677 3.635331 CAGTTTGCATCTCCAAGTGTTG 58.365 45.455 0.00 0.00 0.00 3.33
2351 2680 2.342910 GCAGTTTGCATCTCCAAGTG 57.657 50.000 0.00 0.00 44.26 3.16
2362 2691 1.620323 AGGGAAATGAAGGCAGTTTGC 59.380 47.619 0.00 0.00 44.08 3.68
2364 2693 2.899900 GGAAGGGAAATGAAGGCAGTTT 59.100 45.455 0.00 0.00 31.62 2.66
2460 4077 2.408022 GTCGAGGATGGACGGACG 59.592 66.667 0.00 0.00 33.18 4.79
2483 4100 3.792053 GATAGGCAGTGGGGTCGCG 62.792 68.421 0.00 0.00 0.00 5.87
2484 4101 2.109181 GATAGGCAGTGGGGTCGC 59.891 66.667 0.00 0.00 0.00 5.19
2485 4102 1.144057 GTGATAGGCAGTGGGGTCG 59.856 63.158 0.00 0.00 0.00 4.79
2486 4103 0.179000 CTGTGATAGGCAGTGGGGTC 59.821 60.000 0.00 0.00 0.00 4.46
2487 4104 1.915078 GCTGTGATAGGCAGTGGGGT 61.915 60.000 0.00 0.00 36.42 4.95
2488 4105 1.153086 GCTGTGATAGGCAGTGGGG 60.153 63.158 0.00 0.00 36.42 4.96
2489 4106 4.547859 GCTGTGATAGGCAGTGGG 57.452 61.111 0.00 0.00 36.42 4.61
2540 4157 2.267961 GGGCGGACTCAAATCGGT 59.732 61.111 0.00 0.00 0.00 4.69
2575 4192 1.006805 CAAATCACCGGCGGCAAAA 60.007 52.632 28.71 9.42 0.00 2.44
2578 4196 3.361158 CACAAATCACCGGCGGCA 61.361 61.111 28.71 14.09 0.00 5.69
2693 4457 2.890474 CTCAAATCGGCGGGTCGG 60.890 66.667 7.21 0.00 0.00 4.79
2731 4495 1.821258 GAACCTCCTAATCGGCCGT 59.179 57.895 27.15 9.68 0.00 5.68
2824 4588 4.951963 CGCGCTGCCCTACTAGCC 62.952 72.222 5.56 0.00 36.60 3.93
3128 5055 3.744660 AGAACCAACTCCAACAGATGTC 58.255 45.455 0.00 0.00 0.00 3.06
3197 5124 5.405935 AATTTGGAGATGTAAAAGTGGGC 57.594 39.130 0.00 0.00 0.00 5.36
3307 5268 4.763279 TGTCATCACACATTTGCATCTCTT 59.237 37.500 0.00 0.00 0.00 2.85
3387 5360 4.067896 AGTTATTGGTGTCTCTGCAAGTG 58.932 43.478 0.00 0.00 33.76 3.16
3390 5363 4.065088 GACAGTTATTGGTGTCTCTGCAA 58.935 43.478 0.00 0.00 40.05 4.08
3399 5372 5.476599 TGAATTTGGAGGACAGTTATTGGTG 59.523 40.000 0.00 0.00 0.00 4.17
3400 5373 5.640147 TGAATTTGGAGGACAGTTATTGGT 58.360 37.500 0.00 0.00 0.00 3.67
3509 5482 8.345565 CAGTTCTAACATCAGCAAAACTACTTT 58.654 33.333 0.00 0.00 0.00 2.66
3530 5503 9.468532 AAAATAAAAGCACAGAGAAATCAGTTC 57.531 29.630 0.00 0.00 36.38 3.01
3891 5869 4.872124 CAGCCCTGAAAGAAATTTAATGGC 59.128 41.667 0.00 0.00 34.07 4.40
4225 6221 8.729756 CCAATCGATATCTACAAATAAATGGCA 58.270 33.333 0.00 0.00 0.00 4.92
4283 6284 7.213216 TGCTATTTCAAGTGTGATAAGCAAA 57.787 32.000 0.00 0.00 38.84 3.68
4333 6334 8.839310 TTTCTCCAAAACAAACTTTTGATTGA 57.161 26.923 18.22 5.93 40.73 2.57
4718 9079 4.554723 GCTGGTACAATTGTTCAGTGTGAC 60.555 45.833 27.37 15.39 38.70 3.67
4785 9148 3.296943 CACAAATTTCCATACGCGTTTCG 59.703 43.478 20.78 1.44 45.38 3.46
4914 9278 2.083167 AATTGAAATTGGGCACGCTG 57.917 45.000 0.00 0.00 0.00 5.18
4932 9302 8.561212 CCGGTATTGGTATTTATCGATTCAAAA 58.439 33.333 1.71 0.00 0.00 2.44
4953 9326 1.624312 TGTACAAACATCAGCCCGGTA 59.376 47.619 0.00 0.00 0.00 4.02
5061 9441 3.012518 AGACCGCTGGAAAATTGATCAG 58.987 45.455 0.00 0.00 0.00 2.90
5062 9442 2.749076 CAGACCGCTGGAAAATTGATCA 59.251 45.455 0.00 0.00 38.51 2.92
5063 9443 2.749621 ACAGACCGCTGGAAAATTGATC 59.250 45.455 1.50 0.00 46.60 2.92
5154 9534 1.536073 GGAAAAGGGGAAGCAGGCAC 61.536 60.000 0.00 0.00 0.00 5.01
5164 9544 3.824443 ACTATTTTGTGTCGGAAAAGGGG 59.176 43.478 0.00 0.00 0.00 4.79
5206 9586 5.104735 AGGAAGGCCTGAAATGAAGTACTAG 60.105 44.000 5.69 0.00 44.90 2.57
5242 9625 4.080807 TCGGTATAACCAATCCAGAAGCAA 60.081 41.667 0.00 0.00 38.47 3.91
5251 9634 5.607477 TGACAGGATTCGGTATAACCAATC 58.393 41.667 0.00 0.00 38.47 2.67
5255 9638 6.018180 GTCAAATGACAGGATTCGGTATAACC 60.018 42.308 8.63 0.00 44.18 2.85
5296 9682 2.268298 CACTTTATTCCGACCGAGTGG 58.732 52.381 0.00 0.00 42.84 4.00
5435 9835 0.520827 CTACGACAGAGACCGCGTTC 60.521 60.000 4.92 0.00 38.09 3.95
5461 9862 5.990408 AGTTTAAAACTCTCTGATTGCACG 58.010 37.500 0.00 0.00 37.02 5.34
5462 9863 7.417612 TCAAGTTTAAAACTCTCTGATTGCAC 58.582 34.615 0.00 0.00 41.91 4.57
5490 9895 1.228657 GGGCACGGAAACAGAGTGAC 61.229 60.000 0.00 0.00 42.83 3.67
5563 9971 1.010350 GCGATTCTCATTGCAGCGG 60.010 57.895 0.00 0.00 39.43 5.52
5566 9974 1.010350 GCGGCGATTCTCATTGCAG 60.010 57.895 12.98 0.00 41.25 4.41
5627 10041 5.006386 CAGAAACTGAGCATTCCTACCTTT 58.994 41.667 0.00 0.00 32.44 3.11
5632 10046 4.908601 TTCCAGAAACTGAGCATTCCTA 57.091 40.909 0.00 0.00 32.44 2.94
5634 10048 4.037923 TGTTTTCCAGAAACTGAGCATTCC 59.962 41.667 0.00 0.00 32.44 3.01
5635 10049 5.186996 TGTTTTCCAGAAACTGAGCATTC 57.813 39.130 0.00 0.00 32.44 2.67
5637 10051 4.210331 ACTGTTTTCCAGAAACTGAGCAT 58.790 39.130 13.15 0.00 44.49 3.79
5638 10052 3.620488 ACTGTTTTCCAGAAACTGAGCA 58.380 40.909 13.15 0.00 44.49 4.26
5639 10053 4.498177 GGAACTGTTTTCCAGAAACTGAGC 60.498 45.833 13.15 6.33 44.49 4.26
5693 10110 3.576550 GTGGCTAAACCCAGGAAATCAAA 59.423 43.478 0.00 0.00 37.83 2.69
5720 10137 3.110358 CGAGGTAATCGTTACGAATGCA 58.890 45.455 12.53 0.00 46.62 3.96
5752 10169 4.579869 TGACCTTACCTTTCTTCTCATGC 58.420 43.478 0.00 0.00 0.00 4.06
5753 10170 6.148480 CAGTTGACCTTACCTTTCTTCTCATG 59.852 42.308 0.00 0.00 0.00 3.07
5754 10171 6.234177 CAGTTGACCTTACCTTTCTTCTCAT 58.766 40.000 0.00 0.00 0.00 2.90
5755 10172 5.454755 CCAGTTGACCTTACCTTTCTTCTCA 60.455 44.000 0.00 0.00 0.00 3.27
5762 10206 1.497286 TGCCCAGTTGACCTTACCTTT 59.503 47.619 0.00 0.00 0.00 3.11
5777 10221 0.106769 TTTTGACACTGAGCTGCCCA 60.107 50.000 0.00 0.00 0.00 5.36
5779 10223 1.002033 CAGTTTTGACACTGAGCTGCC 60.002 52.381 0.00 0.00 46.29 4.85
5796 10240 3.245284 CAGTGTTCAAAACGATCGTCAGT 59.755 43.478 22.98 13.59 0.00 3.41
5797 10241 3.489416 TCAGTGTTCAAAACGATCGTCAG 59.511 43.478 22.98 14.15 0.00 3.51
5798 10242 3.449632 TCAGTGTTCAAAACGATCGTCA 58.550 40.909 22.98 11.17 0.00 4.35
5799 10243 4.446234 CTTCAGTGTTCAAAACGATCGTC 58.554 43.478 22.98 8.37 0.00 4.20
5800 10244 3.303132 GCTTCAGTGTTCAAAACGATCGT 60.303 43.478 16.60 16.60 0.00 3.73
5801 10245 3.218398 GCTTCAGTGTTCAAAACGATCG 58.782 45.455 14.88 14.88 0.00 3.69
5802 10246 3.218398 CGCTTCAGTGTTCAAAACGATC 58.782 45.455 0.00 0.00 0.00 3.69
5803 10247 2.612212 ACGCTTCAGTGTTCAAAACGAT 59.388 40.909 0.00 0.00 34.75 3.73
5805 10249 2.452006 ACGCTTCAGTGTTCAAAACG 57.548 45.000 0.00 0.00 34.75 3.60
5806 10250 4.619336 TCAAAACGCTTCAGTGTTCAAAAC 59.381 37.500 6.22 0.00 46.75 2.43
5811 10255 2.540973 GGGTCAAAACGCTTCAGTGTTC 60.541 50.000 6.22 0.00 46.75 3.18
5813 10257 1.021968 GGGTCAAAACGCTTCAGTGT 58.978 50.000 0.00 0.00 41.05 3.55
5814 10258 1.021202 TGGGTCAAAACGCTTCAGTG 58.979 50.000 0.00 0.00 39.03 3.66
5815 10259 1.880027 GATGGGTCAAAACGCTTCAGT 59.120 47.619 4.38 0.00 40.28 3.41
5816 10260 1.879380 TGATGGGTCAAAACGCTTCAG 59.121 47.619 6.98 0.00 43.22 3.02
5817 10261 1.606668 GTGATGGGTCAAAACGCTTCA 59.393 47.619 6.98 6.98 44.74 3.02
5818 10262 1.606668 TGTGATGGGTCAAAACGCTTC 59.393 47.619 0.00 0.00 40.69 3.86
5821 10280 0.387239 GCTGTGATGGGTCAAAACGC 60.387 55.000 0.00 0.00 35.80 4.84
5840 10299 1.926511 AAGCGATTGCCTCCTTTGCG 61.927 55.000 0.00 0.00 44.31 4.85
5881 10340 9.256228 ACTATGATAGACTACTAGAGAGAGAGG 57.744 40.741 6.45 0.00 31.78 3.69
5920 10379 1.308998 CGGCCATTTAGGAAAGCGAT 58.691 50.000 2.24 0.00 41.22 4.58
5939 10398 1.770085 GCCTCATGCTCAGCGCTAAC 61.770 60.000 10.99 2.51 40.11 2.34
6020 10479 4.711949 CCTTGCTGCCTGGTCGCT 62.712 66.667 0.00 0.00 0.00 4.93
6046 10505 6.513180 TGTCAATAGATTAATCAGGACGACC 58.487 40.000 17.56 0.00 0.00 4.79
6069 10531 3.659786 TGTTGTCCGTACCAATCTTCTG 58.340 45.455 0.00 0.00 0.00 3.02
6070 10532 4.062991 GTTGTTGTCCGTACCAATCTTCT 58.937 43.478 0.00 0.00 0.00 2.85
6089 10552 5.640189 AGGCTCATTTCTCATCTTTGTTG 57.360 39.130 0.00 0.00 0.00 3.33
6118 10582 1.530323 ACGTTGGCCCAGTTATTGTC 58.470 50.000 0.00 0.00 0.00 3.18
6120 10584 3.692101 TCATAACGTTGGCCCAGTTATTG 59.308 43.478 18.90 15.34 38.54 1.90
6121 10585 3.958018 TCATAACGTTGGCCCAGTTATT 58.042 40.909 18.90 2.99 38.54 1.40
6123 10587 3.420300 TTCATAACGTTGGCCCAGTTA 57.580 42.857 11.99 14.43 35.23 2.24
6126 10590 2.752354 TGAATTCATAACGTTGGCCCAG 59.248 45.455 11.99 0.00 0.00 4.45
6127 10591 2.752354 CTGAATTCATAACGTTGGCCCA 59.248 45.455 11.99 0.00 0.00 5.36
6128 10592 2.752903 ACTGAATTCATAACGTTGGCCC 59.247 45.455 11.99 0.00 0.00 5.80
6129 10593 3.758300 CACTGAATTCATAACGTTGGCC 58.242 45.455 11.99 0.00 0.00 5.36
6130 10594 3.171277 GCACTGAATTCATAACGTTGGC 58.829 45.455 11.99 0.84 0.00 4.52
6132 10596 6.317088 AGAATGCACTGAATTCATAACGTTG 58.683 36.000 11.99 0.00 36.65 4.10
6133 10597 6.500684 AGAATGCACTGAATTCATAACGTT 57.499 33.333 8.96 5.88 36.65 3.99
6134 10598 6.818644 AGTAGAATGCACTGAATTCATAACGT 59.181 34.615 8.96 0.00 36.65 3.99
6135 10599 7.239166 AGTAGAATGCACTGAATTCATAACG 57.761 36.000 8.96 0.00 36.65 3.18
6136 10600 7.497249 AGGAGTAGAATGCACTGAATTCATAAC 59.503 37.037 8.96 7.02 36.65 1.89
6137 10601 7.568349 AGGAGTAGAATGCACTGAATTCATAA 58.432 34.615 8.96 0.00 36.65 1.90
6138 10602 7.129457 AGGAGTAGAATGCACTGAATTCATA 57.871 36.000 8.96 0.00 36.65 2.15
6142 10634 6.552445 AGTAGGAGTAGAATGCACTGAATT 57.448 37.500 0.00 0.00 0.00 2.17
6156 10648 4.785346 ATCTTGACCGGTAGTAGGAGTA 57.215 45.455 7.34 0.00 0.00 2.59
6157 10649 3.666345 ATCTTGACCGGTAGTAGGAGT 57.334 47.619 7.34 0.00 0.00 3.85
6160 10656 4.073549 CCTCTATCTTGACCGGTAGTAGG 58.926 52.174 7.34 5.56 0.00 3.18
6163 10659 3.947612 TCCTCTATCTTGACCGGTAGT 57.052 47.619 7.34 0.00 0.00 2.73
6170 10666 5.129485 TGACCATTCCTTCCTCTATCTTGAC 59.871 44.000 0.00 0.00 0.00 3.18
6182 10678 5.649395 TGATTGAACAGATGACCATTCCTTC 59.351 40.000 0.00 0.00 0.00 3.46
6207 10707 5.105473 CCATGAGCCTTTTCATCTTGTTGAT 60.105 40.000 0.00 0.00 35.67 2.57
6212 10712 3.129988 GTCCCATGAGCCTTTTCATCTTG 59.870 47.826 0.00 0.00 35.67 3.02
6218 10718 3.013219 GAGAAGTCCCATGAGCCTTTTC 58.987 50.000 0.00 0.00 0.00 2.29
6252 10752 8.939201 TGTCTTGAAATCTCATCTATCTTCAC 57.061 34.615 0.00 0.00 0.00 3.18
6264 10764 7.068839 TGGTAGGTCTATCTGTCTTGAAATCTC 59.931 40.741 0.00 0.00 0.00 2.75
6265 10765 6.897966 TGGTAGGTCTATCTGTCTTGAAATCT 59.102 38.462 0.00 0.00 0.00 2.40
6266 10766 7.113658 TGGTAGGTCTATCTGTCTTGAAATC 57.886 40.000 0.00 0.00 0.00 2.17
6267 10767 6.407525 GCTGGTAGGTCTATCTGTCTTGAAAT 60.408 42.308 0.00 0.00 0.00 2.17
6268 10768 5.105310 GCTGGTAGGTCTATCTGTCTTGAAA 60.105 44.000 0.00 0.00 0.00 2.69
6269 10769 4.402793 GCTGGTAGGTCTATCTGTCTTGAA 59.597 45.833 0.00 0.00 0.00 2.69
6270 10770 3.954904 GCTGGTAGGTCTATCTGTCTTGA 59.045 47.826 0.00 0.00 0.00 3.02
6271 10771 3.701542 TGCTGGTAGGTCTATCTGTCTTG 59.298 47.826 0.00 0.00 0.00 3.02
6272 10772 3.982516 TGCTGGTAGGTCTATCTGTCTT 58.017 45.455 0.00 0.00 0.00 3.01
6273 10773 3.671740 TGCTGGTAGGTCTATCTGTCT 57.328 47.619 0.00 0.00 0.00 3.41
6274 10774 4.737855 TTTGCTGGTAGGTCTATCTGTC 57.262 45.455 0.00 0.00 0.00 3.51
6275 10775 5.700402 ATTTTGCTGGTAGGTCTATCTGT 57.300 39.130 0.00 0.00 0.00 3.41
6276 10776 6.226787 CCTATTTTGCTGGTAGGTCTATCTG 58.773 44.000 0.00 0.00 32.20 2.90
6277 10777 5.221742 GCCTATTTTGCTGGTAGGTCTATCT 60.222 44.000 0.00 0.00 37.80 1.98
6278 10778 4.998033 GCCTATTTTGCTGGTAGGTCTATC 59.002 45.833 0.00 0.00 37.80 2.08
6279 10779 4.660771 AGCCTATTTTGCTGGTAGGTCTAT 59.339 41.667 0.00 0.00 37.76 1.98
6280 10780 4.037927 AGCCTATTTTGCTGGTAGGTCTA 58.962 43.478 0.00 0.00 37.76 2.59
6281 10781 2.846827 AGCCTATTTTGCTGGTAGGTCT 59.153 45.455 0.00 0.00 37.76 3.85
6282 10782 3.283259 AGCCTATTTTGCTGGTAGGTC 57.717 47.619 0.00 0.00 37.76 3.85
6283 10783 3.356290 CAAGCCTATTTTGCTGGTAGGT 58.644 45.455 0.00 0.00 39.48 3.08
6284 10784 2.689983 CCAAGCCTATTTTGCTGGTAGG 59.310 50.000 0.00 0.00 39.48 3.18
6285 10785 2.099756 GCCAAGCCTATTTTGCTGGTAG 59.900 50.000 0.00 0.00 39.48 3.18
6286 10786 2.099405 GCCAAGCCTATTTTGCTGGTA 58.901 47.619 0.00 0.00 39.48 3.25
6287 10787 0.897621 GCCAAGCCTATTTTGCTGGT 59.102 50.000 0.00 0.00 39.48 4.00
6288 10788 0.896923 TGCCAAGCCTATTTTGCTGG 59.103 50.000 0.00 0.00 39.48 4.85
6289 10789 1.547372 AGTGCCAAGCCTATTTTGCTG 59.453 47.619 0.00 0.00 39.48 4.41
6290 10790 1.547372 CAGTGCCAAGCCTATTTTGCT 59.453 47.619 0.00 0.00 41.89 3.91
6291 10791 1.404583 CCAGTGCCAAGCCTATTTTGC 60.405 52.381 0.00 0.00 0.00 3.68
6292 10792 1.404583 GCCAGTGCCAAGCCTATTTTG 60.405 52.381 0.00 0.00 0.00 2.44
6293 10793 0.897621 GCCAGTGCCAAGCCTATTTT 59.102 50.000 0.00 0.00 0.00 1.82
6294 10794 1.315257 CGCCAGTGCCAAGCCTATTT 61.315 55.000 0.00 0.00 0.00 1.40
6295 10795 1.750399 CGCCAGTGCCAAGCCTATT 60.750 57.895 0.00 0.00 0.00 1.73
6296 10796 2.124570 CGCCAGTGCCAAGCCTAT 60.125 61.111 0.00 0.00 0.00 2.57
6297 10797 4.408821 CCGCCAGTGCCAAGCCTA 62.409 66.667 0.00 0.00 0.00 3.93
6306 10806 2.063979 TAGGATGTCCCCGCCAGTG 61.064 63.158 0.00 0.00 36.42 3.66
6307 10807 2.064581 GTAGGATGTCCCCGCCAGT 61.065 63.158 0.00 0.00 36.42 4.00
6308 10808 1.762460 AGTAGGATGTCCCCGCCAG 60.762 63.158 0.00 0.00 36.42 4.85
6309 10809 2.063979 CAGTAGGATGTCCCCGCCA 61.064 63.158 0.00 0.00 36.42 5.69
6310 10810 2.822399 CAGTAGGATGTCCCCGCC 59.178 66.667 0.00 0.00 36.42 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.