Multiple sequence alignment - TraesCS5D01G253400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G253400 chr5D 100.000 2931 0 0 1 2931 360140574 360143504 0.000000e+00 5413.0
1 TraesCS5D01G253400 chr5A 90.726 2038 119 30 881 2888 461073041 461075038 0.000000e+00 2652.0
2 TraesCS5D01G253400 chr5A 87.245 392 21 18 406 775 461072657 461073041 1.260000e-113 420.0
3 TraesCS5D01G253400 chr5A 90.000 190 15 2 3 188 461071326 461071515 2.920000e-60 243.0
4 TraesCS5D01G253400 chr5B 91.332 1719 82 33 461 2137 425573719 425575412 0.000000e+00 2287.0
5 TraesCS5D01G253400 chr5B 87.730 163 10 6 3 156 425573070 425573231 6.450000e-42 182.0
6 TraesCS5D01G253400 chr5B 95.652 92 4 0 273 364 425573230 425573321 6.540000e-32 148.0
7 TraesCS5D01G253400 chr1B 81.513 238 27 12 2137 2371 415119402 415119179 2.320000e-41 180.0
8 TraesCS5D01G253400 chr1B 83.562 146 13 7 2138 2283 642020345 642020479 3.070000e-25 126.0
9 TraesCS5D01G253400 chr6B 86.755 151 12 5 2136 2285 701088138 701087995 8.410000e-36 161.0
10 TraesCS5D01G253400 chr6B 82.667 150 13 9 2136 2285 577084045 577083909 1.430000e-23 121.0
11 TraesCS5D01G253400 chr1A 86.000 150 8 5 2136 2285 314432521 314432657 6.540000e-32 148.0
12 TraesCS5D01G253400 chr1A 83.673 147 15 4 2136 2281 176444123 176444261 2.370000e-26 130.0
13 TraesCS5D01G253400 chr4D 79.295 227 27 8 2137 2362 36473774 36473567 1.100000e-29 141.0
14 TraesCS5D01G253400 chr4D 78.855 227 28 8 2137 2362 36474368 36474161 5.100000e-28 135.0
15 TraesCS5D01G253400 chr7D 78.855 227 28 8 2137 2362 511164073 511163866 5.100000e-28 135.0
16 TraesCS5D01G253400 chr2B 91.753 97 6 2 2134 2230 6310218 6310124 1.830000e-27 134.0
17 TraesCS5D01G253400 chr2B 79.412 136 21 5 2240 2369 703718871 703719005 4.020000e-14 89.8
18 TraesCS5D01G253400 chr6D 82.781 151 12 10 2137 2285 16388873 16388735 3.970000e-24 122.0
19 TraesCS5D01G253400 chr3A 83.077 130 16 6 2157 2285 641882449 641882325 2.390000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G253400 chr5D 360140574 360143504 2930 False 5413.000000 5413 100.000000 1 2931 1 chr5D.!!$F1 2930
1 TraesCS5D01G253400 chr5A 461071326 461075038 3712 False 1105.000000 2652 89.323667 3 2888 3 chr5A.!!$F1 2885
2 TraesCS5D01G253400 chr5B 425573070 425575412 2342 False 872.333333 2287 91.571333 3 2137 3 chr5B.!!$F1 2134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 1574 0.248012 TCAGCCGGCGTCAATCTTTA 59.752 50.0 23.2 0.0 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 3783 0.178992 CCTCAGCCCACAAAGGTTCA 60.179 55.0 0.0 0.0 34.66 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 145 6.209192 ACATCAATGGAAGACAAAAGTGCATA 59.791 34.615 0.00 0.00 0.00 3.14
156 250 8.141268 TGCATACATATAGATTGTCTCAAACGA 58.859 33.333 0.00 0.00 0.00 3.85
157 251 9.144747 GCATACATATAGATTGTCTCAAACGAT 57.855 33.333 0.00 0.00 34.45 3.73
176 270 9.517361 CAAACGATAAGATATTTGTATTCTCGC 57.483 33.333 0.00 0.00 0.00 5.03
177 271 8.812147 AACGATAAGATATTTGTATTCTCGCA 57.188 30.769 0.00 0.00 0.00 5.10
178 272 8.454293 ACGATAAGATATTTGTATTCTCGCAG 57.546 34.615 0.00 0.00 0.00 5.18
179 273 7.062371 ACGATAAGATATTTGTATTCTCGCAGC 59.938 37.037 0.00 0.00 0.00 5.25
180 274 5.582439 AAGATATTTGTATTCTCGCAGCG 57.418 39.130 9.06 9.06 0.00 5.18
181 275 4.871513 AGATATTTGTATTCTCGCAGCGA 58.128 39.130 18.39 18.39 0.00 4.93
182 276 4.681942 AGATATTTGTATTCTCGCAGCGAC 59.318 41.667 15.11 4.85 0.00 5.19
183 277 2.363788 TTTGTATTCTCGCAGCGACT 57.636 45.000 15.11 4.14 0.00 4.18
184 278 3.497297 TTTGTATTCTCGCAGCGACTA 57.503 42.857 15.11 4.85 0.00 2.59
185 279 3.710326 TTGTATTCTCGCAGCGACTAT 57.290 42.857 15.11 12.39 0.00 2.12
186 280 4.823790 TTGTATTCTCGCAGCGACTATA 57.176 40.909 15.11 11.36 0.00 1.31
187 281 4.823790 TGTATTCTCGCAGCGACTATAA 57.176 40.909 15.11 6.50 0.00 0.98
188 282 4.534168 TGTATTCTCGCAGCGACTATAAC 58.466 43.478 15.11 9.27 0.00 1.89
189 283 3.992260 ATTCTCGCAGCGACTATAACT 57.008 42.857 15.11 0.00 0.00 2.24
190 284 3.335786 TTCTCGCAGCGACTATAACTC 57.664 47.619 15.11 0.00 0.00 3.01
191 285 2.285977 TCTCGCAGCGACTATAACTCA 58.714 47.619 15.11 0.00 0.00 3.41
192 286 2.031807 TCTCGCAGCGACTATAACTCAC 59.968 50.000 15.11 0.00 0.00 3.51
193 287 1.065102 TCGCAGCGACTATAACTCACC 59.935 52.381 15.11 0.00 0.00 4.02
194 288 1.065701 CGCAGCGACTATAACTCACCT 59.934 52.381 9.98 0.00 0.00 4.00
195 289 2.479730 CGCAGCGACTATAACTCACCTT 60.480 50.000 9.98 0.00 0.00 3.50
196 290 3.242969 CGCAGCGACTATAACTCACCTTA 60.243 47.826 9.98 0.00 0.00 2.69
197 291 4.043073 GCAGCGACTATAACTCACCTTAC 58.957 47.826 0.00 0.00 0.00 2.34
198 292 4.202030 GCAGCGACTATAACTCACCTTACT 60.202 45.833 0.00 0.00 0.00 2.24
199 293 5.008415 GCAGCGACTATAACTCACCTTACTA 59.992 44.000 0.00 0.00 0.00 1.82
200 294 6.294065 GCAGCGACTATAACTCACCTTACTAT 60.294 42.308 0.00 0.00 0.00 2.12
201 295 7.094890 GCAGCGACTATAACTCACCTTACTATA 60.095 40.741 0.00 0.00 0.00 1.31
202 296 8.948145 CAGCGACTATAACTCACCTTACTATAT 58.052 37.037 0.00 0.00 0.00 0.86
212 306 8.480133 ACTCACCTTACTATATACTCCCTTTG 57.520 38.462 0.00 0.00 0.00 2.77
213 307 7.015389 ACTCACCTTACTATATACTCCCTTTGC 59.985 40.741 0.00 0.00 0.00 3.68
214 308 6.842280 TCACCTTACTATATACTCCCTTTGCA 59.158 38.462 0.00 0.00 0.00 4.08
215 309 7.346175 TCACCTTACTATATACTCCCTTTGCAA 59.654 37.037 0.00 0.00 0.00 4.08
216 310 7.990886 CACCTTACTATATACTCCCTTTGCAAA 59.009 37.037 12.14 12.14 0.00 3.68
217 311 7.991460 ACCTTACTATATACTCCCTTTGCAAAC 59.009 37.037 8.05 0.00 0.00 2.93
218 312 8.211629 CCTTACTATATACTCCCTTTGCAAACT 58.788 37.037 8.05 0.00 0.00 2.66
229 323 9.343539 ACTCCCTTTGCAAACTAATATAAGATC 57.656 33.333 8.05 0.00 0.00 2.75
230 324 9.566432 CTCCCTTTGCAAACTAATATAAGATCT 57.434 33.333 8.05 0.00 0.00 2.75
231 325 9.920946 TCCCTTTGCAAACTAATATAAGATCTT 57.079 29.630 13.56 13.56 0.00 2.40
250 344 8.602472 AGATCTTTTACATCAGTAGAGGAAGT 57.398 34.615 0.00 0.00 0.00 3.01
251 345 9.702253 AGATCTTTTACATCAGTAGAGGAAGTA 57.298 33.333 0.00 0.00 0.00 2.24
256 350 9.667107 TTTTACATCAGTAGAGGAAGTATTTGG 57.333 33.333 0.00 0.00 0.00 3.28
257 351 8.603898 TTACATCAGTAGAGGAAGTATTTGGA 57.396 34.615 0.00 0.00 0.00 3.53
258 352 7.496346 ACATCAGTAGAGGAAGTATTTGGAA 57.504 36.000 0.00 0.00 0.00 3.53
259 353 7.560368 ACATCAGTAGAGGAAGTATTTGGAAG 58.440 38.462 0.00 0.00 0.00 3.46
260 354 7.181125 ACATCAGTAGAGGAAGTATTTGGAAGT 59.819 37.037 0.00 0.00 0.00 3.01
261 355 7.554959 TCAGTAGAGGAAGTATTTGGAAGTT 57.445 36.000 0.00 0.00 0.00 2.66
262 356 7.974504 TCAGTAGAGGAAGTATTTGGAAGTTT 58.025 34.615 0.00 0.00 0.00 2.66
263 357 9.096823 TCAGTAGAGGAAGTATTTGGAAGTTTA 57.903 33.333 0.00 0.00 0.00 2.01
264 358 9.152595 CAGTAGAGGAAGTATTTGGAAGTTTAC 57.847 37.037 0.00 0.00 0.00 2.01
265 359 8.877195 AGTAGAGGAAGTATTTGGAAGTTTACA 58.123 33.333 0.00 0.00 0.00 2.41
266 360 9.498176 GTAGAGGAAGTATTTGGAAGTTTACAA 57.502 33.333 0.00 0.00 0.00 2.41
270 364 9.462606 AGGAAGTATTTGGAAGTTTACAATAGG 57.537 33.333 0.00 0.00 29.62 2.57
271 365 8.188799 GGAAGTATTTGGAAGTTTACAATAGGC 58.811 37.037 0.00 0.00 29.62 3.93
272 366 7.640597 AGTATTTGGAAGTTTACAATAGGCC 57.359 36.000 0.00 0.00 29.62 5.19
273 367 5.576447 ATTTGGAAGTTTACAATAGGCCG 57.424 39.130 0.00 0.00 29.62 6.13
280 374 3.770933 AGTTTACAATAGGCCGTGGTAGA 59.229 43.478 0.00 0.00 0.00 2.59
365 1484 1.705873 AAACAAAACATGGGCGGGTA 58.294 45.000 0.00 0.00 0.00 3.69
379 1498 4.104143 GGTACCTGTCATTCGCGG 57.896 61.111 6.13 0.00 0.00 6.46
380 1499 1.217244 GGTACCTGTCATTCGCGGT 59.783 57.895 6.13 0.00 0.00 5.68
381 1500 0.804933 GGTACCTGTCATTCGCGGTC 60.805 60.000 6.13 0.00 0.00 4.79
382 1501 0.804933 GTACCTGTCATTCGCGGTCC 60.805 60.000 6.13 0.00 0.00 4.46
383 1502 2.274232 TACCTGTCATTCGCGGTCCG 62.274 60.000 6.99 6.99 38.61 4.79
384 1503 2.885644 CTGTCATTCGCGGTCCGG 60.886 66.667 14.38 0.00 37.59 5.14
395 1514 4.019312 GGTCCGGCCCCAAACGTA 62.019 66.667 0.00 0.00 0.00 3.57
396 1515 2.743538 GTCCGGCCCCAAACGTAC 60.744 66.667 0.00 0.00 0.00 3.67
397 1516 4.019312 TCCGGCCCCAAACGTACC 62.019 66.667 0.00 0.00 0.00 3.34
400 1519 4.710167 GGCCCCAAACGTACCGCT 62.710 66.667 0.00 0.00 0.00 5.52
401 1520 3.122971 GCCCCAAACGTACCGCTC 61.123 66.667 0.00 0.00 0.00 5.03
402 1521 2.812178 CCCCAAACGTACCGCTCG 60.812 66.667 0.00 0.00 0.00 5.03
403 1522 2.812178 CCCAAACGTACCGCTCGG 60.812 66.667 6.79 6.79 42.03 4.63
404 1523 3.484547 CCAAACGTACCGCTCGGC 61.485 66.667 8.41 0.00 39.32 5.54
405 1524 3.484547 CAAACGTACCGCTCGGCC 61.485 66.667 8.41 0.00 39.32 6.13
406 1525 4.747529 AAACGTACCGCTCGGCCC 62.748 66.667 8.41 0.00 39.32 5.80
410 1529 4.397832 GTACCGCTCGGCCCCAAA 62.398 66.667 8.41 0.00 39.32 3.28
411 1530 3.638316 TACCGCTCGGCCCCAAAA 61.638 61.111 8.41 0.00 39.32 2.44
412 1531 3.905437 TACCGCTCGGCCCCAAAAC 62.905 63.158 8.41 0.00 39.32 2.43
414 1533 3.291383 CGCTCGGCCCCAAAACAA 61.291 61.111 0.00 0.00 0.00 2.83
415 1534 2.851071 CGCTCGGCCCCAAAACAAA 61.851 57.895 0.00 0.00 0.00 2.83
416 1535 1.443828 GCTCGGCCCCAAAACAAAA 59.556 52.632 0.00 0.00 0.00 2.44
417 1536 0.878523 GCTCGGCCCCAAAACAAAAC 60.879 55.000 0.00 0.00 0.00 2.43
418 1537 0.461961 CTCGGCCCCAAAACAAAACA 59.538 50.000 0.00 0.00 0.00 2.83
419 1538 0.902531 TCGGCCCCAAAACAAAACAA 59.097 45.000 0.00 0.00 0.00 2.83
420 1539 1.278127 TCGGCCCCAAAACAAAACAAA 59.722 42.857 0.00 0.00 0.00 2.83
421 1540 2.084546 CGGCCCCAAAACAAAACAAAA 58.915 42.857 0.00 0.00 0.00 2.44
422 1541 2.159503 CGGCCCCAAAACAAAACAAAAC 60.160 45.455 0.00 0.00 0.00 2.43
423 1542 2.820197 GGCCCCAAAACAAAACAAAACA 59.180 40.909 0.00 0.00 0.00 2.83
424 1543 3.445450 GGCCCCAAAACAAAACAAAACAT 59.555 39.130 0.00 0.00 0.00 2.71
425 1544 4.419280 GCCCCAAAACAAAACAAAACATG 58.581 39.130 0.00 0.00 0.00 3.21
426 1545 4.419280 CCCCAAAACAAAACAAAACATGC 58.581 39.130 0.00 0.00 0.00 4.06
427 1546 4.094212 CCCAAAACAAAACAAAACATGCG 58.906 39.130 0.00 0.00 0.00 4.73
428 1547 4.094212 CCAAAACAAAACAAAACATGCGG 58.906 39.130 0.00 0.00 0.00 5.69
429 1548 4.094212 CAAAACAAAACAAAACATGCGGG 58.906 39.130 0.00 0.00 0.00 6.13
430 1549 2.682155 ACAAAACAAAACATGCGGGT 57.318 40.000 0.00 0.00 0.00 5.28
431 1550 2.979240 ACAAAACAAAACATGCGGGTT 58.021 38.095 0.00 0.00 0.00 4.11
432 1551 2.933260 ACAAAACAAAACATGCGGGTTC 59.067 40.909 0.00 0.00 0.00 3.62
433 1552 2.232756 AAACAAAACATGCGGGTTCC 57.767 45.000 0.00 0.00 0.00 3.62
454 1573 1.003839 TCAGCCGGCGTCAATCTTT 60.004 52.632 23.20 0.00 0.00 2.52
455 1574 0.248012 TCAGCCGGCGTCAATCTTTA 59.752 50.000 23.20 0.00 0.00 1.85
456 1575 1.083489 CAGCCGGCGTCAATCTTTAA 58.917 50.000 23.20 0.00 0.00 1.52
457 1576 1.084289 AGCCGGCGTCAATCTTTAAC 58.916 50.000 23.20 0.00 0.00 2.01
458 1577 1.084289 GCCGGCGTCAATCTTTAACT 58.916 50.000 12.58 0.00 0.00 2.24
459 1578 1.467342 GCCGGCGTCAATCTTTAACTT 59.533 47.619 12.58 0.00 0.00 2.66
578 1998 3.222354 AAGTCTCCGTCCACCGCAC 62.222 63.158 0.00 0.00 34.38 5.34
623 2066 2.809601 CGGAGAAACGCGACCAGG 60.810 66.667 15.93 0.00 0.00 4.45
626 2069 1.005394 GAGAAACGCGACCAGGGAA 60.005 57.895 15.93 0.00 36.53 3.97
636 2079 1.476110 CGACCAGGGAAAAACCACTCA 60.476 52.381 0.00 0.00 41.20 3.41
640 2083 2.623416 CCAGGGAAAAACCACTCAAGTC 59.377 50.000 0.00 0.00 41.20 3.01
666 2109 0.538584 TACAGTGCCATCTGCTCCTG 59.461 55.000 0.00 0.00 42.05 3.86
766 2213 3.613527 GGTAGGTGACCCGGTCTC 58.386 66.667 18.54 14.49 43.25 3.36
780 2227 3.261643 CCCGGTCTCATCATCATAATCCA 59.738 47.826 0.00 0.00 0.00 3.41
783 2230 5.279657 CCGGTCTCATCATCATAATCCAGAA 60.280 44.000 0.00 0.00 0.00 3.02
812 2260 5.623596 CGGTCGGTAGATTATATCATGGCAA 60.624 44.000 0.00 0.00 0.00 4.52
833 2281 4.156622 CGTGCCATGTGAGCTGCG 62.157 66.667 0.00 0.00 0.00 5.18
835 2283 2.435410 TGCCATGTGAGCTGCGAG 60.435 61.111 0.00 0.00 0.00 5.03
872 2323 2.436646 ATCGGGCAGAAGCAACCG 60.437 61.111 0.00 0.00 43.98 4.44
876 2327 2.281484 GGCAGAAGCAACCGACCA 60.281 61.111 0.00 0.00 44.61 4.02
877 2328 2.328099 GGCAGAAGCAACCGACCAG 61.328 63.158 0.00 0.00 44.61 4.00
905 2356 2.328235 TCGCGAGAGTACATAGCCC 58.672 57.895 3.71 0.00 34.84 5.19
954 2405 0.693049 GAGTTTCCCAGGCTCCAAGA 59.307 55.000 0.00 0.00 0.00 3.02
955 2406 1.073923 GAGTTTCCCAGGCTCCAAGAA 59.926 52.381 0.00 0.00 0.00 2.52
956 2407 1.074566 AGTTTCCCAGGCTCCAAGAAG 59.925 52.381 0.00 0.00 0.00 2.85
961 2412 1.065564 CCCAGGCTCCAAGAAGAAGAG 60.066 57.143 0.00 0.00 0.00 2.85
978 2429 2.820037 GGAAGAAGAAGCGCGGGG 60.820 66.667 8.83 0.00 0.00 5.73
1036 2487 2.431942 GAACGTGGTCGCCGATGT 60.432 61.111 0.00 0.00 41.18 3.06
1038 2489 3.927163 AACGTGGTCGCCGATGTCC 62.927 63.158 0.00 0.00 41.18 4.02
1056 2507 2.042261 ACGGAGGCCAACCCCTAT 59.958 61.111 5.01 0.00 34.69 2.57
1184 2635 4.761975 TGGAAACGAACTCTGTTGTTACT 58.238 39.130 0.00 0.00 0.00 2.24
1185 2636 5.180271 TGGAAACGAACTCTGTTGTTACTT 58.820 37.500 0.00 0.00 0.00 2.24
1186 2637 5.064198 TGGAAACGAACTCTGTTGTTACTTG 59.936 40.000 0.00 0.00 0.00 3.16
1187 2638 5.064325 GGAAACGAACTCTGTTGTTACTTGT 59.936 40.000 0.00 0.00 0.00 3.16
1188 2639 6.402875 GGAAACGAACTCTGTTGTTACTTGTT 60.403 38.462 0.00 0.00 0.00 2.83
1189 2640 7.201548 GGAAACGAACTCTGTTGTTACTTGTTA 60.202 37.037 0.00 0.00 0.00 2.41
1190 2641 6.579491 ACGAACTCTGTTGTTACTTGTTAC 57.421 37.500 0.00 0.00 0.00 2.50
1191 2642 5.230726 ACGAACTCTGTTGTTACTTGTTACG 59.769 40.000 0.00 0.00 0.00 3.18
1192 2643 5.399604 AACTCTGTTGTTACTTGTTACGC 57.600 39.130 0.00 0.00 0.00 4.42
1193 2644 4.690122 ACTCTGTTGTTACTTGTTACGCT 58.310 39.130 0.00 0.00 0.00 5.07
1194 2645 5.835257 ACTCTGTTGTTACTTGTTACGCTA 58.165 37.500 0.00 0.00 0.00 4.26
1195 2646 5.689068 ACTCTGTTGTTACTTGTTACGCTAC 59.311 40.000 0.00 0.00 0.00 3.58
1308 2759 1.072332 AACACATGGCAGCACCGTA 59.928 52.632 0.00 0.00 43.94 4.02
1325 2776 6.623223 CACCGTAAGTGCTAAACTAGTAAC 57.377 41.667 0.00 0.00 40.28 2.50
1330 2781 4.548451 AGTGCTAAACTAGTAACCACCC 57.452 45.455 0.00 0.00 37.36 4.61
1352 2806 6.127730 ACCCGAATGAATTTATGTTCTTGGAC 60.128 38.462 0.00 0.00 0.00 4.02
1662 3122 3.941483 GGAGCTACTACAAGGTACGTACA 59.059 47.826 26.02 5.33 0.00 2.90
1829 3294 0.109272 GTTCATCCAGCTCGTGTCGA 60.109 55.000 0.00 0.00 0.00 4.20
1927 3392 1.662044 CTTCCACAACCTGCAAGCC 59.338 57.895 0.00 0.00 0.00 4.35
1929 3394 1.108727 TTCCACAACCTGCAAGCCTG 61.109 55.000 0.00 0.00 0.00 4.85
1930 3395 1.529010 CCACAACCTGCAAGCCTGA 60.529 57.895 0.00 0.00 0.00 3.86
1931 3396 1.656441 CACAACCTGCAAGCCTGAC 59.344 57.895 0.00 0.00 0.00 3.51
1979 3448 0.540133 TGCGGTCTGTGGTACTGGTA 60.540 55.000 0.00 0.00 0.00 3.25
1997 3466 2.933906 GGTATTTTCGCCAATCGTCAGA 59.066 45.455 0.00 0.00 39.67 3.27
2011 3480 1.217882 GTCAGACGTGGGAGTGTTTG 58.782 55.000 0.00 0.00 0.00 2.93
2037 3508 5.762045 CAGTTCCTACTGTTTTCATGTTGG 58.238 41.667 0.00 0.00 45.46 3.77
2038 3509 4.278419 AGTTCCTACTGTTTTCATGTTGGC 59.722 41.667 0.00 0.00 31.99 4.52
2091 3567 6.100792 GCTGTTTACTAAGAGCATTCAGAC 57.899 41.667 2.58 0.00 46.76 3.51
2094 3570 5.862323 TGTTTACTAAGAGCATTCAGACGAC 59.138 40.000 0.00 0.00 0.00 4.34
2114 3590 5.064198 ACGACCGTGACAATATTATTTGTGG 59.936 40.000 0.00 0.00 39.85 4.17
2123 3599 9.460019 TGACAATATTATTTGTGGTGAAGATCA 57.540 29.630 0.00 0.00 39.85 2.92
2126 3602 9.687210 CAATATTATTTGTGGTGAAGATCATGG 57.313 33.333 0.00 0.00 0.00 3.66
2127 3603 5.581126 TTATTTGTGGTGAAGATCATGGC 57.419 39.130 0.00 0.00 0.00 4.40
2128 3604 2.583024 TTGTGGTGAAGATCATGGCA 57.417 45.000 0.00 0.00 0.00 4.92
2129 3605 2.583024 TGTGGTGAAGATCATGGCAA 57.417 45.000 0.00 0.00 0.00 4.52
2130 3606 3.090210 TGTGGTGAAGATCATGGCAAT 57.910 42.857 0.00 0.00 0.00 3.56
2131 3607 4.233632 TGTGGTGAAGATCATGGCAATA 57.766 40.909 0.00 0.00 0.00 1.90
2132 3608 4.795469 TGTGGTGAAGATCATGGCAATAT 58.205 39.130 0.00 0.00 0.00 1.28
2133 3609 5.202765 TGTGGTGAAGATCATGGCAATATT 58.797 37.500 0.00 0.00 0.00 1.28
2134 3610 5.068067 TGTGGTGAAGATCATGGCAATATTG 59.932 40.000 11.27 11.27 0.00 1.90
2135 3611 5.300034 GTGGTGAAGATCATGGCAATATTGA 59.700 40.000 19.73 0.00 0.00 2.57
2136 3612 6.015688 GTGGTGAAGATCATGGCAATATTGAT 60.016 38.462 19.73 2.99 32.93 2.57
2137 3613 6.551975 TGGTGAAGATCATGGCAATATTGATT 59.448 34.615 19.73 0.00 30.48 2.57
2138 3614 7.070198 TGGTGAAGATCATGGCAATATTGATTT 59.930 33.333 19.73 0.00 30.48 2.17
2193 3669 1.212616 GCGCACATACACTCATCCTC 58.787 55.000 0.30 0.00 0.00 3.71
2200 3676 5.694006 GCACATACACTCATCCTCTATGAAC 59.306 44.000 0.00 0.00 44.05 3.18
2204 3680 3.381908 ACACTCATCCTCTATGAACGGAC 59.618 47.826 0.00 0.00 44.05 4.79
2207 3683 3.361786 TCATCCTCTATGAACGGACACA 58.638 45.455 0.00 0.00 41.75 3.72
2214 3690 1.495584 ATGAACGGACACACGCACAC 61.496 55.000 0.00 0.00 37.37 3.82
2216 3692 3.667326 AACGGACACACGCACACCA 62.667 57.895 0.00 0.00 37.37 4.17
2218 3694 1.373622 CGGACACACGCACACCATA 60.374 57.895 0.00 0.00 0.00 2.74
2219 3695 1.623081 CGGACACACGCACACCATAC 61.623 60.000 0.00 0.00 0.00 2.39
2220 3696 1.296056 GGACACACGCACACCATACC 61.296 60.000 0.00 0.00 0.00 2.73
2221 3697 1.296056 GACACACGCACACCATACCC 61.296 60.000 0.00 0.00 0.00 3.69
2222 3698 2.038269 CACACGCACACCATACCCC 61.038 63.158 0.00 0.00 0.00 4.95
2223 3699 2.221299 ACACGCACACCATACCCCT 61.221 57.895 0.00 0.00 0.00 4.79
2224 3700 0.905809 ACACGCACACCATACCCCTA 60.906 55.000 0.00 0.00 0.00 3.53
2225 3701 0.468226 CACGCACACCATACCCCTAT 59.532 55.000 0.00 0.00 0.00 2.57
2226 3702 0.468226 ACGCACACCATACCCCTATG 59.532 55.000 0.00 0.00 0.00 2.23
2227 3703 0.756294 CGCACACCATACCCCTATGA 59.244 55.000 0.00 0.00 32.66 2.15
2228 3704 1.270305 CGCACACCATACCCCTATGAG 60.270 57.143 0.00 0.00 32.66 2.90
2229 3705 1.543429 GCACACCATACCCCTATGAGC 60.543 57.143 0.00 0.00 32.66 4.26
2240 3716 1.905215 CCCTATGAGCACCCCTATGAG 59.095 57.143 0.00 0.00 0.00 2.90
2246 3722 1.147153 GCACCCCTATGAGCACCTC 59.853 63.158 0.00 0.00 0.00 3.85
2250 3726 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
2268 3744 1.342819 GAGAGACTGAGCCGGCATATT 59.657 52.381 31.54 7.63 0.00 1.28
2271 3747 3.194542 AGAGACTGAGCCGGCATATTATC 59.805 47.826 31.54 16.99 0.00 1.75
2274 3750 4.772624 AGACTGAGCCGGCATATTATCTTA 59.227 41.667 31.54 0.00 0.00 2.10
2296 3772 9.100554 TCTTAAGATTTTACGGATAAATGCGAA 57.899 29.630 10.94 0.00 44.78 4.70
2299 3775 6.483687 AGATTTTACGGATAAATGCGAACAC 58.516 36.000 10.94 0.00 44.78 3.32
2307 3783 5.650543 GGATAAATGCGAACACCAGAATTT 58.349 37.500 0.00 0.00 0.00 1.82
2312 3788 2.034053 TGCGAACACCAGAATTTGAACC 59.966 45.455 0.00 0.00 0.00 3.62
2315 3791 4.736464 GCGAACACCAGAATTTGAACCTTT 60.736 41.667 0.00 0.00 0.00 3.11
2324 3800 2.151502 TTTGAACCTTTGTGGGCTGA 57.848 45.000 0.00 0.00 41.11 4.26
2326 3802 0.178992 TGAACCTTTGTGGGCTGAGG 60.179 55.000 0.00 0.00 41.11 3.86
2330 3806 2.208872 ACCTTTGTGGGCTGAGGATAT 58.791 47.619 0.00 0.00 41.11 1.63
2336 3812 2.965831 TGTGGGCTGAGGATATCACTAC 59.034 50.000 4.83 0.00 33.22 2.73
2345 3821 6.893005 GCTGAGGATATCACTACCCTACTAAT 59.107 42.308 4.83 0.00 33.22 1.73
2358 3834 6.732896 ACCCTACTAATCATCTAACCACAG 57.267 41.667 0.00 0.00 0.00 3.66
2359 3835 5.602978 ACCCTACTAATCATCTAACCACAGG 59.397 44.000 0.00 0.00 0.00 4.00
2370 3846 3.030652 CCACAGGTTGGTTCGCAC 58.969 61.111 0.00 0.00 41.10 5.34
2390 3866 2.866156 ACCGTGACAATATTGATGCGAG 59.134 45.455 22.16 15.50 0.00 5.03
2395 3871 6.456315 CCGTGACAATATTGATGCGAGTAAAA 60.456 38.462 22.16 0.00 0.00 1.52
2396 3872 6.958752 CGTGACAATATTGATGCGAGTAAAAA 59.041 34.615 22.16 0.00 0.00 1.94
2401 3877 9.086336 ACAATATTGATGCGAGTAAAAATTTGG 57.914 29.630 22.16 0.00 0.00 3.28
2438 3914 5.195940 CACATAATGTCCTTCCCAGACAAT 58.804 41.667 0.00 0.00 46.67 2.71
2448 3924 5.070313 TCCTTCCCAGACAATTTTCTTTTGG 59.930 40.000 0.00 0.00 0.00 3.28
2487 3964 9.965824 AAAAATTACATGGTTAGAGAACTTGTG 57.034 29.630 0.00 0.00 35.20 3.33
2499 3976 2.936498 AGAACTTGTGTGTTTCGTCCTG 59.064 45.455 0.00 0.00 0.00 3.86
2500 3977 1.014352 ACTTGTGTGTTTCGTCCTGC 58.986 50.000 0.00 0.00 0.00 4.85
2530 4007 1.321474 CACCTGTGTCAACAATGGCT 58.679 50.000 3.48 0.00 35.37 4.75
2536 4013 2.230992 TGTGTCAACAATGGCTAATGGC 59.769 45.455 0.00 0.00 34.94 4.40
2604 4081 2.353011 CCTTGATGTGTCAACAATGGCC 60.353 50.000 0.00 0.00 40.46 5.36
2610 4087 1.344114 GTGTCAACAATGGCCAATGGT 59.656 47.619 24.49 16.42 0.00 3.55
2611 4088 2.045524 TGTCAACAATGGCCAATGGTT 58.954 42.857 24.49 18.10 32.12 3.67
2626 4103 3.683365 ATGGTTTTCATCCCAAAGCAC 57.317 42.857 0.00 0.00 42.68 4.40
2628 4105 1.691434 GGTTTTCATCCCAAAGCACCA 59.309 47.619 0.00 0.00 32.86 4.17
2659 4136 4.434354 GGTACCATTGGCCGGCCA 62.434 66.667 44.23 44.23 45.63 5.36
2699 4180 6.016777 ACTGTATCTCTGAGTTTTGCCTTTTG 60.017 38.462 4.32 0.00 0.00 2.44
2726 4207 2.000447 GTGCACATTAGGAAGACCGAC 59.000 52.381 13.17 0.00 41.83 4.79
2730 4211 3.254060 CACATTAGGAAGACCGACACAG 58.746 50.000 0.00 0.00 41.83 3.66
2733 4214 0.251653 TAGGAAGACCGACACAGGCT 60.252 55.000 0.00 0.00 41.83 4.58
2768 4250 1.135257 ACGATGAGCGAACCTCTTCTG 60.135 52.381 0.00 0.00 44.57 3.02
2795 4277 3.007290 AGAAGATTCCTTTTTGGCCAAGC 59.993 43.478 19.48 0.00 35.26 4.01
2801 4283 1.403249 CCTTTTTGGCCAAGCTCATCG 60.403 52.381 19.48 4.36 0.00 3.84
2855 4337 7.362920 GGGTTGCTATGTGTGATTTTAGACAAT 60.363 37.037 0.00 0.00 0.00 2.71
2888 4370 3.243839 ACAAAAGCAAGCGAAACATGGAT 60.244 39.130 0.00 0.00 0.00 3.41
2889 4371 4.022416 ACAAAAGCAAGCGAAACATGGATA 60.022 37.500 0.00 0.00 0.00 2.59
2890 4372 4.989279 AAAGCAAGCGAAACATGGATAT 57.011 36.364 0.00 0.00 0.00 1.63
2891 4373 3.976793 AGCAAGCGAAACATGGATATG 57.023 42.857 0.00 0.00 40.24 1.78
2892 4374 3.544684 AGCAAGCGAAACATGGATATGA 58.455 40.909 0.00 0.00 37.73 2.15
2893 4375 3.562973 AGCAAGCGAAACATGGATATGAG 59.437 43.478 0.00 0.00 37.73 2.90
2894 4376 3.851105 GCAAGCGAAACATGGATATGAGC 60.851 47.826 0.00 0.00 37.73 4.26
2895 4377 2.498167 AGCGAAACATGGATATGAGCC 58.502 47.619 0.00 0.00 37.73 4.70
2896 4378 2.158769 AGCGAAACATGGATATGAGCCA 60.159 45.455 0.00 0.00 40.24 4.75
2897 4379 2.031682 GCGAAACATGGATATGAGCCAC 60.032 50.000 0.00 0.00 38.44 5.01
2898 4380 3.205338 CGAAACATGGATATGAGCCACA 58.795 45.455 0.00 0.00 38.44 4.17
2899 4381 3.817084 CGAAACATGGATATGAGCCACAT 59.183 43.478 0.00 0.00 38.44 3.21
2900 4382 4.996758 CGAAACATGGATATGAGCCACATA 59.003 41.667 0.00 4.15 44.21 2.29
2901 4383 5.469760 CGAAACATGGATATGAGCCACATAA 59.530 40.000 0.00 0.00 43.47 1.90
2902 4384 6.017192 CGAAACATGGATATGAGCCACATAAA 60.017 38.462 0.00 0.00 43.47 1.40
2903 4385 6.639632 AACATGGATATGAGCCACATAAAC 57.360 37.500 0.00 3.34 43.47 2.01
2904 4386 5.945310 ACATGGATATGAGCCACATAAACT 58.055 37.500 0.00 0.00 43.47 2.66
2905 4387 5.766670 ACATGGATATGAGCCACATAAACTG 59.233 40.000 0.00 4.69 43.47 3.16
2906 4388 5.372343 TGGATATGAGCCACATAAACTGT 57.628 39.130 5.52 0.00 43.47 3.55
2907 4389 5.754782 TGGATATGAGCCACATAAACTGTT 58.245 37.500 5.52 0.00 43.47 3.16
2908 4390 6.186957 TGGATATGAGCCACATAAACTGTTT 58.813 36.000 10.98 10.98 43.47 2.83
2909 4391 6.663093 TGGATATGAGCCACATAAACTGTTTT 59.337 34.615 11.48 0.00 43.47 2.43
2910 4392 7.148086 TGGATATGAGCCACATAAACTGTTTTC 60.148 37.037 11.48 1.79 43.47 2.29
2911 4393 4.481930 TGAGCCACATAAACTGTTTTCG 57.518 40.909 11.48 5.67 35.29 3.46
2912 4394 3.252215 TGAGCCACATAAACTGTTTTCGG 59.748 43.478 11.48 8.07 35.29 4.30
2913 4395 2.556622 AGCCACATAAACTGTTTTCGGG 59.443 45.455 11.48 9.29 35.29 5.14
2914 4396 2.924880 GCCACATAAACTGTTTTCGGGC 60.925 50.000 11.48 14.63 35.29 6.13
2915 4397 2.294791 CCACATAAACTGTTTTCGGGCA 59.705 45.455 11.48 0.00 35.29 5.36
2916 4398 3.564511 CACATAAACTGTTTTCGGGCAG 58.435 45.455 11.48 0.00 35.29 4.85
2917 4399 2.030274 ACATAAACTGTTTTCGGGCAGC 60.030 45.455 11.48 0.00 32.90 5.25
2918 4400 0.955905 TAAACTGTTTTCGGGCAGCC 59.044 50.000 11.48 1.26 36.26 4.85
2919 4401 1.744320 AAACTGTTTTCGGGCAGCCC 61.744 55.000 22.33 22.33 41.09 5.19
2920 4402 2.597217 CTGTTTTCGGGCAGCCCA 60.597 61.111 30.86 14.72 45.83 5.36
2921 4403 2.909965 TGTTTTCGGGCAGCCCAC 60.910 61.111 30.86 20.52 45.83 4.61
2922 4404 3.680786 GTTTTCGGGCAGCCCACC 61.681 66.667 30.86 8.62 45.83 4.61
2923 4405 4.211330 TTTTCGGGCAGCCCACCA 62.211 61.111 30.86 10.64 45.83 4.17
2924 4406 3.740495 TTTTCGGGCAGCCCACCAA 62.740 57.895 30.86 16.31 45.83 3.67
2925 4407 3.740495 TTTCGGGCAGCCCACCAAA 62.740 57.895 30.86 21.02 45.83 3.28
2926 4408 4.966787 TCGGGCAGCCCACCAAAC 62.967 66.667 30.86 0.92 45.83 2.93
2927 4409 4.974721 CGGGCAGCCCACCAAACT 62.975 66.667 30.86 0.00 45.83 2.66
2928 4410 2.524148 GGGCAGCCCACCAAACTT 60.524 61.111 27.33 0.00 44.65 2.66
2929 4411 2.736531 GGCAGCCCACCAAACTTG 59.263 61.111 0.00 0.00 0.00 3.16
2930 4412 2.133641 GGCAGCCCACCAAACTTGT 61.134 57.895 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.543172 GCACACATCAATTTTACAAGTCATGAT 59.457 33.333 0.00 0.00 0.00 2.45
50 59 5.405873 TGCATGCACACATCAATTTTACAAG 59.594 36.000 18.46 0.00 32.87 3.16
51 60 5.295152 TGCATGCACACATCAATTTTACAA 58.705 33.333 18.46 0.00 32.87 2.41
55 64 3.499157 GGTTGCATGCACACATCAATTTT 59.501 39.130 22.58 0.00 32.87 1.82
61 70 1.131883 GAGAGGTTGCATGCACACATC 59.868 52.381 26.03 26.03 32.87 3.06
156 250 7.062371 GTCGCTGCGAGAATACAAATATCTTAT 59.938 37.037 26.68 0.00 36.23 1.73
157 251 6.362551 GTCGCTGCGAGAATACAAATATCTTA 59.637 38.462 26.68 0.00 36.23 2.10
158 252 5.175856 GTCGCTGCGAGAATACAAATATCTT 59.824 40.000 26.68 0.00 36.23 2.40
159 253 4.681942 GTCGCTGCGAGAATACAAATATCT 59.318 41.667 26.68 0.00 36.23 1.98
160 254 4.681942 AGTCGCTGCGAGAATACAAATATC 59.318 41.667 26.68 8.64 36.23 1.63
161 255 4.621991 AGTCGCTGCGAGAATACAAATAT 58.378 39.130 26.68 0.00 36.23 1.28
162 256 4.041740 AGTCGCTGCGAGAATACAAATA 57.958 40.909 26.68 0.00 36.23 1.40
163 257 2.893637 AGTCGCTGCGAGAATACAAAT 58.106 42.857 26.68 0.00 36.23 2.32
164 258 2.363788 AGTCGCTGCGAGAATACAAA 57.636 45.000 26.68 0.00 36.23 2.83
165 259 3.710326 ATAGTCGCTGCGAGAATACAA 57.290 42.857 26.68 6.18 36.23 2.41
166 260 4.275196 AGTTATAGTCGCTGCGAGAATACA 59.725 41.667 26.68 12.68 36.23 2.29
167 261 4.785417 AGTTATAGTCGCTGCGAGAATAC 58.215 43.478 26.68 18.27 36.23 1.89
168 262 4.514066 TGAGTTATAGTCGCTGCGAGAATA 59.486 41.667 26.68 21.03 36.23 1.75
169 263 3.315470 TGAGTTATAGTCGCTGCGAGAAT 59.685 43.478 26.68 22.04 36.23 2.40
170 264 2.681344 TGAGTTATAGTCGCTGCGAGAA 59.319 45.455 26.68 16.59 36.23 2.87
171 265 2.031807 GTGAGTTATAGTCGCTGCGAGA 59.968 50.000 26.68 16.83 36.23 4.04
172 266 2.376956 GTGAGTTATAGTCGCTGCGAG 58.623 52.381 26.68 0.00 36.23 5.03
173 267 1.065102 GGTGAGTTATAGTCGCTGCGA 59.935 52.381 22.24 22.24 0.00 5.10
174 268 1.065701 AGGTGAGTTATAGTCGCTGCG 59.934 52.381 17.25 17.25 0.00 5.18
175 269 2.873133 AGGTGAGTTATAGTCGCTGC 57.127 50.000 0.00 0.00 0.00 5.25
176 270 5.502153 AGTAAGGTGAGTTATAGTCGCTG 57.498 43.478 0.00 0.00 0.00 5.18
186 280 8.925338 CAAAGGGAGTATATAGTAAGGTGAGTT 58.075 37.037 0.00 0.00 0.00 3.01
187 281 7.015389 GCAAAGGGAGTATATAGTAAGGTGAGT 59.985 40.741 0.00 0.00 0.00 3.41
188 282 7.015292 TGCAAAGGGAGTATATAGTAAGGTGAG 59.985 40.741 0.00 0.00 0.00 3.51
189 283 6.842280 TGCAAAGGGAGTATATAGTAAGGTGA 59.158 38.462 0.00 0.00 0.00 4.02
190 284 7.062749 TGCAAAGGGAGTATATAGTAAGGTG 57.937 40.000 0.00 0.00 0.00 4.00
191 285 7.685849 TTGCAAAGGGAGTATATAGTAAGGT 57.314 36.000 0.00 0.00 0.00 3.50
192 286 8.211629 AGTTTGCAAAGGGAGTATATAGTAAGG 58.788 37.037 13.26 0.00 0.00 2.69
203 297 9.343539 GATCTTATATTAGTTTGCAAAGGGAGT 57.656 33.333 13.26 0.00 0.00 3.85
204 298 9.566432 AGATCTTATATTAGTTTGCAAAGGGAG 57.434 33.333 13.26 2.97 0.00 4.30
205 299 9.920946 AAGATCTTATATTAGTTTGCAAAGGGA 57.079 29.630 13.26 1.25 0.00 4.20
224 318 9.041354 ACTTCCTCTACTGATGTAAAAGATCTT 57.959 33.333 0.88 0.88 0.00 2.40
225 319 8.602472 ACTTCCTCTACTGATGTAAAAGATCT 57.398 34.615 0.00 0.00 0.00 2.75
230 324 9.667107 CCAAATACTTCCTCTACTGATGTAAAA 57.333 33.333 0.00 0.00 0.00 1.52
231 325 9.042450 TCCAAATACTTCCTCTACTGATGTAAA 57.958 33.333 0.00 0.00 0.00 2.01
232 326 8.603898 TCCAAATACTTCCTCTACTGATGTAA 57.396 34.615 0.00 0.00 0.00 2.41
233 327 8.603898 TTCCAAATACTTCCTCTACTGATGTA 57.396 34.615 0.00 0.00 0.00 2.29
234 328 7.181125 ACTTCCAAATACTTCCTCTACTGATGT 59.819 37.037 0.00 0.00 0.00 3.06
235 329 7.560368 ACTTCCAAATACTTCCTCTACTGATG 58.440 38.462 0.00 0.00 0.00 3.07
236 330 7.741554 ACTTCCAAATACTTCCTCTACTGAT 57.258 36.000 0.00 0.00 0.00 2.90
237 331 7.554959 AACTTCCAAATACTTCCTCTACTGA 57.445 36.000 0.00 0.00 0.00 3.41
238 332 9.152595 GTAAACTTCCAAATACTTCCTCTACTG 57.847 37.037 0.00 0.00 0.00 2.74
239 333 8.877195 TGTAAACTTCCAAATACTTCCTCTACT 58.123 33.333 0.00 0.00 0.00 2.57
240 334 9.498176 TTGTAAACTTCCAAATACTTCCTCTAC 57.502 33.333 0.00 0.00 0.00 2.59
244 338 9.462606 CCTATTGTAAACTTCCAAATACTTCCT 57.537 33.333 0.00 0.00 0.00 3.36
245 339 8.188799 GCCTATTGTAAACTTCCAAATACTTCC 58.811 37.037 0.00 0.00 0.00 3.46
246 340 8.188799 GGCCTATTGTAAACTTCCAAATACTTC 58.811 37.037 0.00 0.00 0.00 3.01
247 341 7.148137 CGGCCTATTGTAAACTTCCAAATACTT 60.148 37.037 0.00 0.00 0.00 2.24
248 342 6.317893 CGGCCTATTGTAAACTTCCAAATACT 59.682 38.462 0.00 0.00 0.00 2.12
249 343 6.094464 ACGGCCTATTGTAAACTTCCAAATAC 59.906 38.462 0.00 0.00 0.00 1.89
250 344 6.094325 CACGGCCTATTGTAAACTTCCAAATA 59.906 38.462 0.00 0.00 0.00 1.40
251 345 5.014202 ACGGCCTATTGTAAACTTCCAAAT 58.986 37.500 0.00 0.00 0.00 2.32
252 346 4.216687 CACGGCCTATTGTAAACTTCCAAA 59.783 41.667 0.00 0.00 0.00 3.28
253 347 3.754323 CACGGCCTATTGTAAACTTCCAA 59.246 43.478 0.00 0.00 0.00 3.53
254 348 3.340034 CACGGCCTATTGTAAACTTCCA 58.660 45.455 0.00 0.00 0.00 3.53
255 349 2.681344 CCACGGCCTATTGTAAACTTCC 59.319 50.000 0.00 0.00 0.00 3.46
256 350 3.340928 ACCACGGCCTATTGTAAACTTC 58.659 45.455 0.00 0.00 0.00 3.01
257 351 3.428413 ACCACGGCCTATTGTAAACTT 57.572 42.857 0.00 0.00 0.00 2.66
258 352 3.770933 TCTACCACGGCCTATTGTAAACT 59.229 43.478 0.00 0.00 0.00 2.66
259 353 3.867493 GTCTACCACGGCCTATTGTAAAC 59.133 47.826 0.00 0.00 0.00 2.01
260 354 3.514706 TGTCTACCACGGCCTATTGTAAA 59.485 43.478 0.00 0.00 0.00 2.01
261 355 3.098377 TGTCTACCACGGCCTATTGTAA 58.902 45.455 0.00 0.00 0.00 2.41
262 356 2.691526 CTGTCTACCACGGCCTATTGTA 59.308 50.000 0.00 0.00 0.00 2.41
263 357 1.480954 CTGTCTACCACGGCCTATTGT 59.519 52.381 0.00 0.00 0.00 2.71
264 358 1.480954 ACTGTCTACCACGGCCTATTG 59.519 52.381 0.00 0.00 34.19 1.90
265 359 1.861982 ACTGTCTACCACGGCCTATT 58.138 50.000 0.00 0.00 34.19 1.73
266 360 2.584236 CTACTGTCTACCACGGCCTAT 58.416 52.381 0.00 0.00 34.19 2.57
267 361 2.020694 GCTACTGTCTACCACGGCCTA 61.021 57.143 0.00 0.00 34.19 3.93
268 362 1.321074 GCTACTGTCTACCACGGCCT 61.321 60.000 0.00 0.00 34.19 5.19
269 363 1.141234 GCTACTGTCTACCACGGCC 59.859 63.158 0.00 0.00 34.19 6.13
270 364 1.226603 CGCTACTGTCTACCACGGC 60.227 63.158 0.00 0.00 34.19 5.68
271 365 0.179171 CACGCTACTGTCTACCACGG 60.179 60.000 0.00 0.00 37.41 4.94
272 366 0.800631 TCACGCTACTGTCTACCACG 59.199 55.000 0.00 0.00 0.00 4.94
273 367 1.135460 GGTCACGCTACTGTCTACCAC 60.135 57.143 0.00 0.00 0.00 4.16
280 374 1.579932 CACTCGGTCACGCTACTGT 59.420 57.895 0.00 0.00 40.69 3.55
365 1484 2.264794 GGACCGCGAATGACAGGT 59.735 61.111 8.23 0.00 40.11 4.00
367 1486 2.885644 CCGGACCGCGAATGACAG 60.886 66.667 8.23 0.00 0.00 3.51
378 1497 4.019312 TACGTTTGGGGCCGGACC 62.019 66.667 22.07 22.07 37.93 4.46
379 1498 2.743538 GTACGTTTGGGGCCGGAC 60.744 66.667 5.05 0.00 0.00 4.79
380 1499 4.019312 GGTACGTTTGGGGCCGGA 62.019 66.667 5.05 0.00 0.00 5.14
393 1512 3.905437 TTTTGGGGCCGAGCGGTAC 62.905 63.158 10.94 4.15 37.65 3.34
394 1513 3.638316 TTTTGGGGCCGAGCGGTA 61.638 61.111 10.94 0.00 37.65 4.02
397 1516 2.356818 TTTTGTTTTGGGGCCGAGCG 62.357 55.000 0.00 0.00 0.00 5.03
398 1517 0.878523 GTTTTGTTTTGGGGCCGAGC 60.879 55.000 0.00 0.00 0.00 5.03
399 1518 0.461961 TGTTTTGTTTTGGGGCCGAG 59.538 50.000 0.00 0.00 0.00 4.63
400 1519 0.902531 TTGTTTTGTTTTGGGGCCGA 59.097 45.000 0.00 0.00 0.00 5.54
401 1520 1.739067 TTTGTTTTGTTTTGGGGCCG 58.261 45.000 0.00 0.00 0.00 6.13
402 1521 2.820197 TGTTTTGTTTTGTTTTGGGGCC 59.180 40.909 0.00 0.00 0.00 5.80
403 1522 4.419280 CATGTTTTGTTTTGTTTTGGGGC 58.581 39.130 0.00 0.00 0.00 5.80
404 1523 4.419280 GCATGTTTTGTTTTGTTTTGGGG 58.581 39.130 0.00 0.00 0.00 4.96
405 1524 4.094212 CGCATGTTTTGTTTTGTTTTGGG 58.906 39.130 0.00 0.00 0.00 4.12
406 1525 4.094212 CCGCATGTTTTGTTTTGTTTTGG 58.906 39.130 0.00 0.00 0.00 3.28
407 1526 4.094212 CCCGCATGTTTTGTTTTGTTTTG 58.906 39.130 0.00 0.00 0.00 2.44
408 1527 3.753797 ACCCGCATGTTTTGTTTTGTTTT 59.246 34.783 0.00 0.00 0.00 2.43
409 1528 3.339141 ACCCGCATGTTTTGTTTTGTTT 58.661 36.364 0.00 0.00 0.00 2.83
410 1529 2.979240 ACCCGCATGTTTTGTTTTGTT 58.021 38.095 0.00 0.00 0.00 2.83
411 1530 2.682155 ACCCGCATGTTTTGTTTTGT 57.318 40.000 0.00 0.00 0.00 2.83
412 1531 2.286563 GGAACCCGCATGTTTTGTTTTG 59.713 45.455 0.00 0.00 0.00 2.44
413 1532 2.169561 AGGAACCCGCATGTTTTGTTTT 59.830 40.909 0.00 0.00 0.00 2.43
414 1533 1.760029 AGGAACCCGCATGTTTTGTTT 59.240 42.857 0.00 0.00 0.00 2.83
415 1534 1.068434 CAGGAACCCGCATGTTTTGTT 59.932 47.619 0.00 0.00 0.00 2.83
416 1535 0.673437 CAGGAACCCGCATGTTTTGT 59.327 50.000 0.00 0.00 0.00 2.83
417 1536 0.673437 ACAGGAACCCGCATGTTTTG 59.327 50.000 0.00 0.00 0.00 2.44
418 1537 0.958822 GACAGGAACCCGCATGTTTT 59.041 50.000 0.00 0.00 0.00 2.43
419 1538 0.179004 TGACAGGAACCCGCATGTTT 60.179 50.000 0.00 0.00 0.00 2.83
420 1539 0.606401 CTGACAGGAACCCGCATGTT 60.606 55.000 0.00 0.00 0.00 2.71
421 1540 1.003355 CTGACAGGAACCCGCATGT 60.003 57.895 0.00 0.00 0.00 3.21
422 1541 2.401766 GCTGACAGGAACCCGCATG 61.402 63.158 4.26 0.00 0.00 4.06
423 1542 2.045926 GCTGACAGGAACCCGCAT 60.046 61.111 4.26 0.00 0.00 4.73
424 1543 4.329545 GGCTGACAGGAACCCGCA 62.330 66.667 4.26 0.00 0.00 5.69
426 1545 4.760047 CCGGCTGACAGGAACCCG 62.760 72.222 11.11 11.11 38.71 5.28
429 1548 4.681978 ACGCCGGCTGACAGGAAC 62.682 66.667 26.68 0.00 0.00 3.62
430 1549 4.373116 GACGCCGGCTGACAGGAA 62.373 66.667 26.68 0.00 0.00 3.36
432 1551 3.958147 ATTGACGCCGGCTGACAGG 62.958 63.158 26.68 10.34 0.00 4.00
433 1552 2.434884 ATTGACGCCGGCTGACAG 60.435 61.111 26.68 11.18 0.00 3.51
454 1573 4.651962 AGGCCTGCTGGTTTTTAAAAGTTA 59.348 37.500 3.11 0.00 35.27 2.24
455 1574 3.454447 AGGCCTGCTGGTTTTTAAAAGTT 59.546 39.130 3.11 0.00 35.27 2.66
456 1575 3.038280 AGGCCTGCTGGTTTTTAAAAGT 58.962 40.909 3.11 0.00 35.27 2.66
457 1576 3.392882 CAGGCCTGCTGGTTTTTAAAAG 58.607 45.455 22.33 0.00 35.27 2.27
458 1577 2.103941 CCAGGCCTGCTGGTTTTTAAAA 59.896 45.455 28.39 0.00 37.22 1.52
459 1578 1.691434 CCAGGCCTGCTGGTTTTTAAA 59.309 47.619 28.39 0.00 37.22 1.52
610 2030 0.664224 TTTTTCCCTGGTCGCGTTTC 59.336 50.000 5.77 0.00 0.00 2.78
623 2066 5.674933 CACTAGACTTGAGTGGTTTTTCC 57.325 43.478 0.00 0.00 40.58 3.13
636 2079 2.605257 TGGCACTGTACCACTAGACTT 58.395 47.619 0.00 0.00 30.29 3.01
640 2083 2.739932 GCAGATGGCACTGTACCACTAG 60.740 54.545 0.90 0.00 40.82 2.57
765 2212 6.175471 CGGGAATTCTGGATTATGATGATGA 58.825 40.000 5.23 0.00 0.00 2.92
766 2213 5.356190 CCGGGAATTCTGGATTATGATGATG 59.644 44.000 5.23 0.00 44.90 3.07
780 2227 2.083628 ATCTACCGACCGGGAATTCT 57.916 50.000 13.43 0.00 39.97 2.40
783 2230 5.266788 TGATATAATCTACCGACCGGGAAT 58.733 41.667 13.43 0.00 39.97 3.01
812 2260 1.676635 AGCTCACATGGCACGCATT 60.677 52.632 0.00 0.00 0.00 3.56
862 2313 1.594331 GAAACTGGTCGGTTGCTTCT 58.406 50.000 0.00 0.00 0.00 2.85
872 2323 1.730593 CGCGATCGTCGAAACTGGTC 61.731 60.000 21.75 0.00 43.74 4.02
873 2324 1.800315 CGCGATCGTCGAAACTGGT 60.800 57.895 21.75 0.00 43.74 4.00
876 2327 0.247735 CTCTCGCGATCGTCGAAACT 60.248 55.000 26.15 0.00 43.74 2.66
877 2328 0.520827 ACTCTCGCGATCGTCGAAAC 60.521 55.000 26.15 7.01 43.74 2.78
954 2405 2.694213 GCGCTTCTTCTTCCTCTTCTT 58.306 47.619 0.00 0.00 0.00 2.52
955 2406 1.403514 CGCGCTTCTTCTTCCTCTTCT 60.404 52.381 5.56 0.00 0.00 2.85
956 2407 0.995728 CGCGCTTCTTCTTCCTCTTC 59.004 55.000 5.56 0.00 0.00 2.87
961 2412 2.820037 CCCCGCGCTTCTTCTTCC 60.820 66.667 5.56 0.00 0.00 3.46
978 2429 3.567797 GGATCCGCAGCAGAACGC 61.568 66.667 0.00 0.00 42.91 4.84
1016 2467 2.341101 ATCGGCGACCACGTTCTCT 61.341 57.895 13.76 0.00 41.98 3.10
1038 2489 2.375345 ATAGGGGTTGGCCTCCGTG 61.375 63.158 3.32 0.00 35.21 4.94
1184 2635 1.135315 CCTGCGTAGGTAGCGTAACAA 60.135 52.381 11.99 0.00 39.39 2.83
1185 2636 0.452987 CCTGCGTAGGTAGCGTAACA 59.547 55.000 11.99 0.00 39.39 2.41
1186 2637 0.869028 GCCTGCGTAGGTAGCGTAAC 60.869 60.000 21.31 0.00 46.41 2.50
1187 2638 1.314534 TGCCTGCGTAGGTAGCGTAA 61.315 55.000 21.31 0.00 46.41 3.18
1188 2639 1.750018 TGCCTGCGTAGGTAGCGTA 60.750 57.895 21.31 0.00 46.41 4.42
1189 2640 3.066190 TGCCTGCGTAGGTAGCGT 61.066 61.111 21.31 0.00 46.41 5.07
1190 2641 2.582498 GTGCCTGCGTAGGTAGCG 60.582 66.667 21.31 0.00 46.41 4.26
1192 2643 0.460284 CTTGGTGCCTGCGTAGGTAG 60.460 60.000 21.31 7.28 46.41 3.18
1193 2644 1.594833 CTTGGTGCCTGCGTAGGTA 59.405 57.895 21.31 14.41 46.41 3.08
1194 2645 2.347490 CTTGGTGCCTGCGTAGGT 59.653 61.111 21.31 0.00 46.41 3.08
1308 2759 4.562143 CGGGTGGTTACTAGTTTAGCACTT 60.562 45.833 25.85 0.00 39.52 3.16
1320 2771 6.184789 ACATAAATTCATTCGGGTGGTTACT 58.815 36.000 0.00 0.00 0.00 2.24
1321 2772 6.445357 ACATAAATTCATTCGGGTGGTTAC 57.555 37.500 0.00 0.00 0.00 2.50
1325 2776 5.835113 AGAACATAAATTCATTCGGGTGG 57.165 39.130 0.00 0.00 0.00 4.61
1352 2806 2.535984 GCAGATCGGTCACACGAATTAG 59.464 50.000 0.00 0.00 46.92 1.73
1683 3143 5.360714 ACTTGTCACAAAACCACATCTTGAT 59.639 36.000 0.00 0.00 0.00 2.57
1684 3144 4.704540 ACTTGTCACAAAACCACATCTTGA 59.295 37.500 0.00 0.00 0.00 3.02
1685 3145 4.997565 ACTTGTCACAAAACCACATCTTG 58.002 39.130 0.00 0.00 0.00 3.02
1897 3362 4.087892 TGGAAGCCGCTGAGAGCC 62.088 66.667 0.00 0.00 38.18 4.70
1927 3392 2.202146 GGTCGTCGTCGTCGTCAG 60.202 66.667 11.41 0.00 38.33 3.51
1929 3394 4.783841 CGGGTCGTCGTCGTCGTC 62.784 72.222 11.41 6.21 38.33 4.20
1979 3448 1.393539 CGTCTGACGATTGGCGAAAAT 59.606 47.619 24.86 0.00 46.05 1.82
1997 3466 1.078072 TGCACAAACACTCCCACGT 60.078 52.632 0.00 0.00 0.00 4.49
2037 3508 4.742201 TCGGCTCCTCTGCAACGC 62.742 66.667 0.00 0.00 34.04 4.84
2038 3509 2.507992 CTCGGCTCCTCTGCAACG 60.508 66.667 0.00 0.00 34.04 4.10
2089 3565 6.182634 CACAAATAATATTGTCACGGTCGTC 58.817 40.000 0.00 0.00 41.44 4.20
2091 3567 5.064198 ACCACAAATAATATTGTCACGGTCG 59.936 40.000 0.00 0.00 41.44 4.79
2094 3570 6.429791 TCACCACAAATAATATTGTCACGG 57.570 37.500 0.00 0.00 41.44 4.94
2114 3590 8.882415 AAAATCAATATTGCCATGATCTTCAC 57.118 30.769 10.76 0.00 32.83 3.18
2149 3625 1.733041 GAGCGCTTGCGTCTGTACA 60.733 57.895 13.26 0.00 45.69 2.90
2177 3653 5.917447 CGTTCATAGAGGATGAGTGTATGTG 59.083 44.000 0.00 0.00 45.43 3.21
2178 3654 5.010112 CCGTTCATAGAGGATGAGTGTATGT 59.990 44.000 0.00 0.00 45.43 2.29
2193 3669 0.713883 GTGCGTGTGTCCGTTCATAG 59.286 55.000 0.00 0.00 0.00 2.23
2200 3676 1.373622 TATGGTGTGCGTGTGTCCG 60.374 57.895 0.00 0.00 0.00 4.79
2204 3680 2.038269 GGGGTATGGTGTGCGTGTG 61.038 63.158 0.00 0.00 0.00 3.82
2207 3683 0.468226 CATAGGGGTATGGTGTGCGT 59.532 55.000 0.00 0.00 0.00 5.24
2214 3690 0.693049 GGGTGCTCATAGGGGTATGG 59.307 60.000 0.00 0.00 0.00 2.74
2216 3692 0.573279 AGGGGTGCTCATAGGGGTAT 59.427 55.000 0.00 0.00 0.00 2.73
2218 3694 0.573279 ATAGGGGTGCTCATAGGGGT 59.427 55.000 0.00 0.00 0.00 4.95
2219 3695 0.987294 CATAGGGGTGCTCATAGGGG 59.013 60.000 0.00 0.00 0.00 4.79
2220 3696 1.905215 CTCATAGGGGTGCTCATAGGG 59.095 57.143 0.00 0.00 0.00 3.53
2221 3697 1.277557 GCTCATAGGGGTGCTCATAGG 59.722 57.143 0.00 0.00 0.00 2.57
2222 3698 1.973515 TGCTCATAGGGGTGCTCATAG 59.026 52.381 0.00 0.00 0.00 2.23
2223 3699 1.694150 GTGCTCATAGGGGTGCTCATA 59.306 52.381 0.00 0.00 0.00 2.15
2224 3700 0.471617 GTGCTCATAGGGGTGCTCAT 59.528 55.000 0.00 0.00 0.00 2.90
2225 3701 1.626356 GGTGCTCATAGGGGTGCTCA 61.626 60.000 0.00 0.00 0.00 4.26
2226 3702 1.147153 GGTGCTCATAGGGGTGCTC 59.853 63.158 0.00 0.00 0.00 4.26
2227 3703 1.307343 AGGTGCTCATAGGGGTGCT 60.307 57.895 0.00 0.00 0.00 4.40
2228 3704 1.147153 GAGGTGCTCATAGGGGTGC 59.853 63.158 0.00 0.00 0.00 5.01
2229 3705 1.832912 GGAGGTGCTCATAGGGGTG 59.167 63.158 0.00 0.00 31.08 4.61
2240 3716 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
2246 3722 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
2250 3726 3.194542 AGATAATATGCCGGCTCAGTCTC 59.805 47.826 29.70 17.03 0.00 3.36
2271 3747 9.155053 GTTCGCATTTATCCGTAAAATCTTAAG 57.845 33.333 0.00 0.00 33.76 1.85
2274 3750 6.964934 GTGTTCGCATTTATCCGTAAAATCTT 59.035 34.615 0.00 0.00 33.76 2.40
2296 3772 4.141959 CCACAAAGGTTCAAATTCTGGTGT 60.142 41.667 0.00 0.00 0.00 4.16
2299 3775 3.803368 GCCCACAAAGGTTCAAATTCTGG 60.803 47.826 0.00 0.00 34.66 3.86
2307 3783 0.178992 CCTCAGCCCACAAAGGTTCA 60.179 55.000 0.00 0.00 34.66 3.18
2312 3788 3.118112 AGTGATATCCTCAGCCCACAAAG 60.118 47.826 0.00 0.00 33.51 2.77
2315 3791 2.180946 AGTGATATCCTCAGCCCACA 57.819 50.000 0.00 0.00 33.51 4.17
2324 3800 8.851876 AGATGATTAGTAGGGTAGTGATATCCT 58.148 37.037 0.00 0.00 0.00 3.24
2330 3806 7.504911 GTGGTTAGATGATTAGTAGGGTAGTGA 59.495 40.741 0.00 0.00 0.00 3.41
2336 3812 5.602978 ACCTGTGGTTAGATGATTAGTAGGG 59.397 44.000 0.00 0.00 27.29 3.53
2358 3834 2.589442 TCACGGTGCGAACCAACC 60.589 61.111 14.51 0.00 0.00 3.77
2359 3835 1.707239 TTGTCACGGTGCGAACCAAC 61.707 55.000 14.51 8.08 0.00 3.77
2363 3839 2.413796 TCAATATTGTCACGGTGCGAAC 59.586 45.455 14.97 0.00 0.00 3.95
2366 3842 2.850631 GCATCAATATTGTCACGGTGCG 60.851 50.000 14.97 0.00 0.00 5.34
2367 3843 2.719798 GCATCAATATTGTCACGGTGC 58.280 47.619 14.97 12.13 0.00 5.01
2370 3846 2.866156 ACTCGCATCAATATTGTCACGG 59.134 45.455 14.97 12.03 0.00 4.94
2400 3876 9.167311 GGACATTATGTGGATATAGTGATTTCC 57.833 37.037 1.24 0.00 34.61 3.13
2401 3877 9.950496 AGGACATTATGTGGATATAGTGATTTC 57.050 33.333 1.24 0.00 0.00 2.17
2417 3893 6.780457 AAATTGTCTGGGAAGGACATTATG 57.220 37.500 0.00 0.00 42.26 1.90
2418 3894 7.184862 AGAAAATTGTCTGGGAAGGACATTAT 58.815 34.615 0.00 0.00 42.26 1.28
2499 3976 2.747855 CAGGTGGGCCTCTTTCGC 60.748 66.667 4.53 0.00 44.97 4.70
2500 3977 1.672356 CACAGGTGGGCCTCTTTCG 60.672 63.158 4.53 0.00 44.97 3.46
2530 4007 2.021723 GCTTTGGGATGGACGCCATTA 61.022 52.381 11.82 1.57 45.26 1.90
2536 4013 1.303236 TGGTGCTTTGGGATGGACG 60.303 57.895 0.00 0.00 0.00 4.79
2604 4081 3.747529 GTGCTTTGGGATGAAAACCATTG 59.252 43.478 0.00 0.00 36.48 2.82
2610 4087 1.969923 CCTGGTGCTTTGGGATGAAAA 59.030 47.619 0.00 0.00 0.00 2.29
2611 4088 1.146774 TCCTGGTGCTTTGGGATGAAA 59.853 47.619 0.00 0.00 0.00 2.69
2637 4114 2.672295 GGCCAATGGTACCCGTGA 59.328 61.111 10.07 0.00 0.00 4.35
2657 4134 1.444895 GTGGAGCTTTGCGCAATGG 60.445 57.895 30.08 23.12 42.61 3.16
2659 4136 1.174712 ACAGTGGAGCTTTGCGCAAT 61.175 50.000 25.64 9.44 42.61 3.56
2669 4146 4.464069 AAACTCAGAGATACAGTGGAGC 57.536 45.455 3.79 0.00 0.00 4.70
2675 4152 6.376978 CAAAAGGCAAAACTCAGAGATACAG 58.623 40.000 3.79 0.00 0.00 2.74
2676 4153 5.241506 CCAAAAGGCAAAACTCAGAGATACA 59.758 40.000 3.79 0.00 0.00 2.29
2705 4186 1.066430 TCGGTCTTCCTAATGTGCACC 60.066 52.381 15.69 0.00 0.00 5.01
2709 4190 3.254060 CTGTGTCGGTCTTCCTAATGTG 58.746 50.000 0.00 0.00 0.00 3.21
2711 4192 2.893637 CCTGTGTCGGTCTTCCTAATG 58.106 52.381 0.00 0.00 0.00 1.90
2726 4207 1.679139 TGGTGAACTTGAAGCCTGTG 58.321 50.000 0.00 0.00 0.00 3.66
2730 4211 1.197721 CGTCATGGTGAACTTGAAGCC 59.802 52.381 0.00 0.00 35.33 4.35
2733 4214 3.996363 CTCATCGTCATGGTGAACTTGAA 59.004 43.478 0.00 0.00 35.33 2.69
2768 4250 4.240888 GCCAAAAAGGAATCTTCTCTTGC 58.759 43.478 0.00 0.00 41.22 4.01
2820 4302 1.340991 ACATAGCAACCCACATCACCC 60.341 52.381 0.00 0.00 0.00 4.61
2855 4337 4.327898 CGCTTGCTTTTGTCTACGGTATAA 59.672 41.667 0.00 0.00 0.00 0.98
2888 4370 5.123186 CCGAAAACAGTTTATGTGGCTCATA 59.877 40.000 5.21 5.21 43.00 2.15
2889 4371 4.082787 CCGAAAACAGTTTATGTGGCTCAT 60.083 41.667 7.28 7.28 43.00 2.90
2890 4372 3.252215 CCGAAAACAGTTTATGTGGCTCA 59.748 43.478 0.00 0.00 43.00 4.26
2891 4373 3.365969 CCCGAAAACAGTTTATGTGGCTC 60.366 47.826 0.00 0.00 43.00 4.70
2892 4374 2.556622 CCCGAAAACAGTTTATGTGGCT 59.443 45.455 0.00 0.00 43.00 4.75
2893 4375 2.924880 GCCCGAAAACAGTTTATGTGGC 60.925 50.000 0.00 6.06 43.00 5.01
2894 4376 2.294791 TGCCCGAAAACAGTTTATGTGG 59.705 45.455 0.00 0.00 43.00 4.17
2895 4377 3.564511 CTGCCCGAAAACAGTTTATGTG 58.435 45.455 0.00 0.00 43.00 3.21
2896 4378 2.030274 GCTGCCCGAAAACAGTTTATGT 60.030 45.455 0.00 0.00 46.97 2.29
2897 4379 2.595386 GCTGCCCGAAAACAGTTTATG 58.405 47.619 0.00 0.00 36.26 1.90
2898 4380 1.544246 GGCTGCCCGAAAACAGTTTAT 59.456 47.619 7.66 0.00 36.26 1.40
2899 4381 0.955905 GGCTGCCCGAAAACAGTTTA 59.044 50.000 7.66 0.00 36.26 2.01
2900 4382 1.739667 GGCTGCCCGAAAACAGTTT 59.260 52.632 7.66 0.00 36.26 2.66
2901 4383 2.200337 GGGCTGCCCGAAAACAGTT 61.200 57.895 24.16 0.00 36.26 3.16
2902 4384 2.597510 GGGCTGCCCGAAAACAGT 60.598 61.111 24.16 0.00 36.26 3.55
2911 4393 2.524148 AAGTTTGGTGGGCTGCCC 60.524 61.111 30.97 30.97 45.71 5.36
2912 4394 2.133641 ACAAGTTTGGTGGGCTGCC 61.134 57.895 11.05 11.05 0.00 4.85
2913 4395 3.537388 ACAAGTTTGGTGGGCTGC 58.463 55.556 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.