Multiple sequence alignment - TraesCS5D01G251700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G251700 chr5D 100.000 4007 0 0 1 4007 357397863 357393857 0.000000e+00 7400.0
1 TraesCS5D01G251700 chr5D 83.639 1473 159 52 989 2411 357371991 357370551 0.000000e+00 1310.0
2 TraesCS5D01G251700 chr5D 82.466 1460 177 38 989 2412 357159940 357158524 0.000000e+00 1205.0
3 TraesCS5D01G251700 chr5D 88.796 357 30 6 2632 2982 357158176 357157824 2.860000e-116 429.0
4 TraesCS5D01G251700 chr5D 88.076 369 27 11 2617 2982 357370217 357369863 4.790000e-114 422.0
5 TraesCS5D01G251700 chr5D 83.243 185 27 3 215 395 35531429 35531245 2.480000e-37 167.0
6 TraesCS5D01G251700 chr5D 80.833 120 21 2 1920 2038 357079668 357079550 4.260000e-15 93.5
7 TraesCS5D01G251700 chr5D 77.419 155 34 1 441 595 117745593 117745746 1.530000e-14 91.6
8 TraesCS5D01G251700 chr5A 95.005 2783 111 14 662 3436 458562720 458559958 0.000000e+00 4344.0
9 TraesCS5D01G251700 chr5A 84.634 1230 125 31 989 2189 458525345 458524151 0.000000e+00 1166.0
10 TraesCS5D01G251700 chr5A 89.485 466 41 7 3544 4007 458555802 458555343 2.080000e-162 582.0
11 TraesCS5D01G251700 chr5A 79.909 662 98 23 1172 1804 458331280 458330625 1.700000e-123 453.0
12 TraesCS5D01G251700 chr5A 87.968 374 37 5 2613 2982 458523180 458522811 6.150000e-118 435.0
13 TraesCS5D01G251700 chr5A 90.789 152 14 0 399 550 458562923 458562772 1.890000e-48 204.0
14 TraesCS5D01G251700 chr5A 92.661 109 8 0 3438 3546 458556749 458556641 1.490000e-34 158.0
15 TraesCS5D01G251700 chr5A 81.667 120 20 2 1920 2038 458330481 458330363 9.160000e-17 99.0
16 TraesCS5D01G251700 chr5B 89.415 3146 213 58 406 3491 422041478 422038393 0.000000e+00 3855.0
17 TraesCS5D01G251700 chr5B 86.069 1048 105 17 989 2015 421998684 421997657 0.000000e+00 1088.0
18 TraesCS5D01G251700 chr5B 81.024 664 96 21 1159 1804 421861627 421860976 5.980000e-138 501.0
19 TraesCS5D01G251700 chr5B 80.424 613 76 32 2632 3225 421996941 421996354 1.030000e-115 427.0
20 TraesCS5D01G251700 chr5B 81.667 120 20 2 1920 2038 421860827 421860709 9.160000e-17 99.0
21 TraesCS5D01G251700 chr5B 88.679 53 5 1 3488 3539 422038364 422038312 3.340000e-06 63.9
22 TraesCS5D01G251700 chr3B 81.885 1220 155 44 996 2174 148500309 148499115 0.000000e+00 968.0
23 TraesCS5D01G251700 chr3B 79.122 752 99 32 2276 2993 148499039 148498312 2.180000e-127 466.0
24 TraesCS5D01G251700 chr3B 97.143 35 1 0 398 432 443802353 443802319 4.320000e-05 60.2
25 TraesCS5D01G251700 chr3A 83.130 1067 117 40 1163 2174 115849607 115848549 0.000000e+00 915.0
26 TraesCS5D01G251700 chr2B 84.530 181 24 4 217 394 211629349 211629170 4.120000e-40 176.0
27 TraesCS5D01G251700 chr2B 79.612 206 38 4 195 399 446108675 446108877 1.160000e-30 145.0
28 TraesCS5D01G251700 chr1D 83.784 185 24 4 215 395 471759073 471759255 1.910000e-38 171.0
29 TraesCS5D01G251700 chr1D 100.000 32 0 0 399 430 3818090 3818121 4.320000e-05 60.2
30 TraesCS5D01G251700 chr1D 100.000 28 0 0 567 594 493820884 493820857 7.000000e-03 52.8
31 TraesCS5D01G251700 chr7D 83.784 185 23 5 216 395 513211554 513211736 6.890000e-38 169.0
32 TraesCS5D01G251700 chr7D 86.164 159 17 3 237 391 125907599 125907756 2.480000e-37 167.0
33 TraesCS5D01G251700 chr7D 87.143 70 7 2 533 601 143995541 143995473 1.190000e-10 78.7
34 TraesCS5D01G251700 chr7D 97.222 36 1 0 398 433 496724649 496724684 1.200000e-05 62.1
35 TraesCS5D01G251700 chr3D 82.609 184 28 4 215 395 83492073 83491891 4.140000e-35 159.0
36 TraesCS5D01G251700 chr3D 90.385 52 2 3 167 216 269098388 269098438 9.300000e-07 65.8
37 TraesCS5D01G251700 chr3D 90.385 52 2 3 167 216 269112443 269112493 9.300000e-07 65.8
38 TraesCS5D01G251700 chr3D 81.013 79 12 3 525 601 547513456 547513533 4.320000e-05 60.2
39 TraesCS5D01G251700 chr2D 82.609 184 28 4 215 395 630131589 630131407 4.140000e-35 159.0
40 TraesCS5D01G251700 chr2A 82.199 191 26 5 214 399 216837720 216837907 1.490000e-34 158.0
41 TraesCS5D01G251700 chr7B 81.768 181 31 2 3597 3776 650547612 650547433 2.490000e-32 150.0
42 TraesCS5D01G251700 chr7B 81.768 181 31 2 3597 3776 650559150 650558971 2.490000e-32 150.0
43 TraesCS5D01G251700 chr7B 81.868 182 29 4 3597 3776 650593927 650593748 2.490000e-32 150.0
44 TraesCS5D01G251700 chr7B 81.215 181 32 2 3597 3776 650570993 650570814 1.160000e-30 145.0
45 TraesCS5D01G251700 chr7B 78.431 153 32 1 442 594 157803140 157802989 9.160000e-17 99.0
46 TraesCS5D01G251700 chrUn 76.543 243 50 6 3550 3790 310055302 310055065 4.200000e-25 126.0
47 TraesCS5D01G251700 chr7A 90.566 53 4 1 549 601 145490021 145490072 7.190000e-08 69.4
48 TraesCS5D01G251700 chr6A 73.256 172 43 3 3620 3790 153653693 153653524 4.320000e-05 60.2
49 TraesCS5D01G251700 chr6D 80.723 83 9 5 3574 3653 126515609 126515687 1.560000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G251700 chr5D 357393857 357397863 4006 True 7400.00 7400 100.0000 1 4007 1 chr5D.!!$R3 4006
1 TraesCS5D01G251700 chr5D 357369863 357371991 2128 True 866.00 1310 85.8575 989 2982 2 chr5D.!!$R5 1993
2 TraesCS5D01G251700 chr5D 357157824 357159940 2116 True 817.00 1205 85.6310 989 2982 2 chr5D.!!$R4 1993
3 TraesCS5D01G251700 chr5A 458555343 458562923 7580 True 1322.00 4344 91.9850 399 4007 4 chr5A.!!$R3 3608
4 TraesCS5D01G251700 chr5A 458522811 458525345 2534 True 800.50 1166 86.3010 989 2982 2 chr5A.!!$R2 1993
5 TraesCS5D01G251700 chr5A 458330363 458331280 917 True 276.00 453 80.7880 1172 2038 2 chr5A.!!$R1 866
6 TraesCS5D01G251700 chr5B 422038312 422041478 3166 True 1959.45 3855 89.0470 406 3539 2 chr5B.!!$R3 3133
7 TraesCS5D01G251700 chr5B 421996354 421998684 2330 True 757.50 1088 83.2465 989 3225 2 chr5B.!!$R2 2236
8 TraesCS5D01G251700 chr5B 421860709 421861627 918 True 300.00 501 81.3455 1159 2038 2 chr5B.!!$R1 879
9 TraesCS5D01G251700 chr3B 148498312 148500309 1997 True 717.00 968 80.5035 996 2993 2 chr3B.!!$R2 1997
10 TraesCS5D01G251700 chr3A 115848549 115849607 1058 True 915.00 915 83.1300 1163 2174 1 chr3A.!!$R1 1011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.035739 GTCCGGAACTTGTAGCCCAA 59.964 55.0 5.23 0.00 0.00 4.12 F
240 241 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.0 13.58 13.58 34.38 4.18 F
1126 1140 0.601311 GGCCTTCATCGAATCGAGGG 60.601 60.0 17.24 13.39 39.91 4.30 F
2371 2934 0.304705 GGCTATGCATGTTCGAACCG 59.695 55.0 24.78 16.75 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2010 0.743688 ATGTCAGATCGAAGCTCGCT 59.256 50.000 0.00 0.00 40.21 4.93 R
1892 2019 6.018425 CAGAAATGAACCCTTATGTCAGATCG 60.018 42.308 0.00 0.00 0.00 3.69 R
2994 3837 0.321564 TATATGCTCATGGGCGCCAC 60.322 55.000 30.85 18.39 35.80 5.01 R
3694 8634 1.066257 CAACAGCTGCACCCACAAC 59.934 57.895 15.27 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.358737 GGCAATAGGGATCGCCGG 60.359 66.667 6.09 0.00 34.26 6.13
18 19 2.358737 GCAATAGGGATCGCCGGG 60.359 66.667 2.18 0.00 33.83 5.73
19 20 2.347490 CAATAGGGATCGCCGGGG 59.653 66.667 13.31 13.31 33.83 5.73
20 21 3.637273 AATAGGGATCGCCGGGGC 61.637 66.667 14.85 0.00 37.85 5.80
21 22 4.640690 ATAGGGATCGCCGGGGCT 62.641 66.667 14.85 3.40 39.32 5.19
22 23 2.741878 AATAGGGATCGCCGGGGCTA 62.742 60.000 14.85 9.75 39.32 3.93
32 33 3.607163 CGGGGCTACGGTCTTGTA 58.393 61.111 0.00 0.00 0.00 2.41
33 34 1.140375 CGGGGCTACGGTCTTGTAC 59.860 63.158 0.00 0.00 0.00 2.90
34 35 1.318158 CGGGGCTACGGTCTTGTACT 61.318 60.000 0.00 0.00 0.00 2.73
35 36 0.900421 GGGGCTACGGTCTTGTACTT 59.100 55.000 0.00 0.00 0.00 2.24
36 37 1.277273 GGGGCTACGGTCTTGTACTTT 59.723 52.381 0.00 0.00 0.00 2.66
37 38 2.614779 GGGCTACGGTCTTGTACTTTC 58.385 52.381 0.00 0.00 0.00 2.62
38 39 2.028748 GGGCTACGGTCTTGTACTTTCA 60.029 50.000 0.00 0.00 0.00 2.69
39 40 3.251571 GGCTACGGTCTTGTACTTTCAG 58.748 50.000 0.00 0.00 0.00 3.02
40 41 3.305881 GGCTACGGTCTTGTACTTTCAGT 60.306 47.826 0.00 0.00 0.00 3.41
41 42 3.673809 GCTACGGTCTTGTACTTTCAGTG 59.326 47.826 0.00 0.00 0.00 3.66
42 43 3.814005 ACGGTCTTGTACTTTCAGTGT 57.186 42.857 0.00 0.00 0.00 3.55
43 44 3.714391 ACGGTCTTGTACTTTCAGTGTC 58.286 45.455 0.00 0.00 0.00 3.67
44 45 3.057734 CGGTCTTGTACTTTCAGTGTCC 58.942 50.000 0.00 0.00 0.00 4.02
45 46 3.243771 CGGTCTTGTACTTTCAGTGTCCT 60.244 47.826 0.00 0.00 0.00 3.85
46 47 4.704965 GGTCTTGTACTTTCAGTGTCCTT 58.295 43.478 0.00 0.00 0.00 3.36
47 48 5.508489 CGGTCTTGTACTTTCAGTGTCCTTA 60.508 44.000 0.00 0.00 0.00 2.69
48 49 6.465084 GGTCTTGTACTTTCAGTGTCCTTAT 58.535 40.000 0.00 0.00 0.00 1.73
49 50 6.935208 GGTCTTGTACTTTCAGTGTCCTTATT 59.065 38.462 0.00 0.00 0.00 1.40
50 51 7.444487 GGTCTTGTACTTTCAGTGTCCTTATTT 59.556 37.037 0.00 0.00 0.00 1.40
51 52 8.496751 GTCTTGTACTTTCAGTGTCCTTATTTC 58.503 37.037 0.00 0.00 0.00 2.17
52 53 7.660208 TCTTGTACTTTCAGTGTCCTTATTTCC 59.340 37.037 0.00 0.00 0.00 3.13
53 54 6.833041 TGTACTTTCAGTGTCCTTATTTCCA 58.167 36.000 0.00 0.00 0.00 3.53
54 55 7.284074 TGTACTTTCAGTGTCCTTATTTCCAA 58.716 34.615 0.00 0.00 0.00 3.53
55 56 6.635030 ACTTTCAGTGTCCTTATTTCCAAC 57.365 37.500 0.00 0.00 0.00 3.77
56 57 5.535030 ACTTTCAGTGTCCTTATTTCCAACC 59.465 40.000 0.00 0.00 0.00 3.77
57 58 3.670625 TCAGTGTCCTTATTTCCAACCG 58.329 45.455 0.00 0.00 0.00 4.44
58 59 2.747446 CAGTGTCCTTATTTCCAACCGG 59.253 50.000 0.00 0.00 0.00 5.28
59 60 2.640826 AGTGTCCTTATTTCCAACCGGA 59.359 45.455 9.46 0.00 40.60 5.14
60 61 2.745821 GTGTCCTTATTTCCAACCGGAC 59.254 50.000 9.46 0.00 42.67 4.79
61 62 2.290450 TGTCCTTATTTCCAACCGGACC 60.290 50.000 9.46 0.00 42.67 4.46
62 63 1.282738 TCCTTATTTCCAACCGGACCC 59.717 52.381 9.46 0.00 42.67 4.46
63 64 1.004979 CCTTATTTCCAACCGGACCCA 59.995 52.381 9.46 0.00 42.67 4.51
64 65 2.365582 CTTATTTCCAACCGGACCCAG 58.634 52.381 9.46 0.00 42.67 4.45
65 66 1.659022 TATTTCCAACCGGACCCAGA 58.341 50.000 9.46 0.00 42.67 3.86
66 67 0.999712 ATTTCCAACCGGACCCAGAT 59.000 50.000 9.46 0.00 42.67 2.90
67 68 0.774908 TTTCCAACCGGACCCAGATT 59.225 50.000 9.46 0.00 42.67 2.40
68 69 1.659022 TTCCAACCGGACCCAGATTA 58.341 50.000 9.46 0.00 42.67 1.75
69 70 0.906775 TCCAACCGGACCCAGATTAC 59.093 55.000 9.46 0.00 35.91 1.89
70 71 0.616371 CCAACCGGACCCAGATTACA 59.384 55.000 9.46 0.00 0.00 2.41
71 72 1.677820 CCAACCGGACCCAGATTACAC 60.678 57.143 9.46 0.00 0.00 2.90
72 73 1.002659 CAACCGGACCCAGATTACACA 59.997 52.381 9.46 0.00 0.00 3.72
73 74 1.580059 ACCGGACCCAGATTACACAT 58.420 50.000 9.46 0.00 0.00 3.21
74 75 2.754465 ACCGGACCCAGATTACACATA 58.246 47.619 9.46 0.00 0.00 2.29
75 76 2.433239 ACCGGACCCAGATTACACATAC 59.567 50.000 9.46 0.00 0.00 2.39
76 77 2.698797 CCGGACCCAGATTACACATACT 59.301 50.000 0.00 0.00 0.00 2.12
77 78 3.134081 CCGGACCCAGATTACACATACTT 59.866 47.826 0.00 0.00 0.00 2.24
78 79 4.383770 CCGGACCCAGATTACACATACTTT 60.384 45.833 0.00 0.00 0.00 2.66
79 80 4.570772 CGGACCCAGATTACACATACTTTG 59.429 45.833 0.00 0.00 0.00 2.77
80 81 4.881850 GGACCCAGATTACACATACTTTGG 59.118 45.833 0.00 0.00 0.00 3.28
81 82 4.270008 ACCCAGATTACACATACTTTGGC 58.730 43.478 0.00 0.00 0.00 4.52
82 83 4.018415 ACCCAGATTACACATACTTTGGCT 60.018 41.667 0.00 0.00 0.00 4.75
83 84 5.190925 ACCCAGATTACACATACTTTGGCTA 59.809 40.000 0.00 0.00 0.00 3.93
84 85 5.760253 CCCAGATTACACATACTTTGGCTAG 59.240 44.000 0.00 0.00 0.00 3.42
85 86 6.349300 CCAGATTACACATACTTTGGCTAGT 58.651 40.000 0.00 0.00 0.00 2.57
86 87 6.480320 CCAGATTACACATACTTTGGCTAGTC 59.520 42.308 0.00 0.00 0.00 2.59
87 88 6.480320 CAGATTACACATACTTTGGCTAGTCC 59.520 42.308 0.00 0.00 0.00 3.85
88 89 3.247006 ACACATACTTTGGCTAGTCCG 57.753 47.619 0.00 0.00 37.80 4.79
89 90 2.093658 ACACATACTTTGGCTAGTCCGG 60.094 50.000 0.00 0.00 37.80 5.14
90 91 2.167693 CACATACTTTGGCTAGTCCGGA 59.832 50.000 0.00 0.00 37.80 5.14
91 92 2.835764 ACATACTTTGGCTAGTCCGGAA 59.164 45.455 5.23 0.00 37.80 4.30
92 93 3.195661 CATACTTTGGCTAGTCCGGAAC 58.804 50.000 5.23 0.00 37.80 3.62
93 94 1.349067 ACTTTGGCTAGTCCGGAACT 58.651 50.000 5.23 8.86 42.33 3.01
94 95 1.697982 ACTTTGGCTAGTCCGGAACTT 59.302 47.619 5.23 0.00 39.55 2.66
95 96 2.076863 CTTTGGCTAGTCCGGAACTTG 58.923 52.381 5.23 8.37 39.55 3.16
96 97 1.053424 TTGGCTAGTCCGGAACTTGT 58.947 50.000 5.23 0.00 39.55 3.16
97 98 1.927487 TGGCTAGTCCGGAACTTGTA 58.073 50.000 5.23 0.00 39.55 2.41
98 99 1.822990 TGGCTAGTCCGGAACTTGTAG 59.177 52.381 5.23 3.72 39.55 2.74
99 100 1.471153 GGCTAGTCCGGAACTTGTAGC 60.471 57.143 5.23 13.44 39.55 3.58
100 101 1.471153 GCTAGTCCGGAACTTGTAGCC 60.471 57.143 5.23 0.00 39.55 3.93
101 102 1.136500 CTAGTCCGGAACTTGTAGCCC 59.864 57.143 5.23 0.00 39.55 5.19
102 103 0.834687 AGTCCGGAACTTGTAGCCCA 60.835 55.000 5.23 0.00 33.03 5.36
103 104 0.035739 GTCCGGAACTTGTAGCCCAA 59.964 55.000 5.23 0.00 0.00 4.12
111 112 2.997485 CTTGTAGCCCAAGTGCTTTC 57.003 50.000 5.73 0.00 44.64 2.62
112 113 2.508526 CTTGTAGCCCAAGTGCTTTCT 58.491 47.619 5.73 0.00 44.64 2.52
113 114 3.674997 CTTGTAGCCCAAGTGCTTTCTA 58.325 45.455 5.73 0.00 44.64 2.10
114 115 4.265073 CTTGTAGCCCAAGTGCTTTCTAT 58.735 43.478 5.73 0.00 44.64 1.98
115 116 5.428253 CTTGTAGCCCAAGTGCTTTCTATA 58.572 41.667 5.73 0.00 44.64 1.31
116 117 5.023533 TGTAGCCCAAGTGCTTTCTATAG 57.976 43.478 0.00 0.00 42.75 1.31
117 118 3.567478 AGCCCAAGTGCTTTCTATAGG 57.433 47.619 0.00 0.00 38.85 2.57
118 119 2.846827 AGCCCAAGTGCTTTCTATAGGT 59.153 45.455 0.00 0.00 38.85 3.08
119 120 2.945668 GCCCAAGTGCTTTCTATAGGTG 59.054 50.000 0.00 0.00 0.00 4.00
120 121 3.370527 GCCCAAGTGCTTTCTATAGGTGA 60.371 47.826 0.00 0.00 0.00 4.02
121 122 4.687219 GCCCAAGTGCTTTCTATAGGTGAT 60.687 45.833 0.00 0.00 0.00 3.06
122 123 4.818546 CCCAAGTGCTTTCTATAGGTGATG 59.181 45.833 0.00 0.00 0.00 3.07
123 124 5.396772 CCCAAGTGCTTTCTATAGGTGATGA 60.397 44.000 0.00 0.00 0.00 2.92
124 125 6.294473 CCAAGTGCTTTCTATAGGTGATGAT 58.706 40.000 0.00 0.00 0.00 2.45
125 126 6.204301 CCAAGTGCTTTCTATAGGTGATGATG 59.796 42.308 0.00 0.00 0.00 3.07
126 127 5.862845 AGTGCTTTCTATAGGTGATGATGG 58.137 41.667 0.00 0.00 0.00 3.51
127 128 4.453819 GTGCTTTCTATAGGTGATGATGGC 59.546 45.833 0.00 0.00 0.00 4.40
128 129 4.006319 GCTTTCTATAGGTGATGATGGCC 58.994 47.826 0.00 0.00 0.00 5.36
129 130 4.583871 CTTTCTATAGGTGATGATGGCCC 58.416 47.826 0.00 0.00 0.00 5.80
130 131 3.274281 TCTATAGGTGATGATGGCCCA 57.726 47.619 0.00 0.00 0.00 5.36
131 132 3.806975 TCTATAGGTGATGATGGCCCAT 58.193 45.455 0.00 0.00 0.00 4.00
132 133 4.178339 TCTATAGGTGATGATGGCCCATT 58.822 43.478 0.00 0.00 0.00 3.16
133 134 5.349690 TCTATAGGTGATGATGGCCCATTA 58.650 41.667 0.00 0.00 0.00 1.90
134 135 5.790096 TCTATAGGTGATGATGGCCCATTAA 59.210 40.000 0.00 0.00 0.00 1.40
135 136 3.234234 AGGTGATGATGGCCCATTAAG 57.766 47.619 0.00 0.00 0.00 1.85
136 137 2.515429 AGGTGATGATGGCCCATTAAGT 59.485 45.455 0.00 0.00 0.00 2.24
137 138 2.887152 GGTGATGATGGCCCATTAAGTC 59.113 50.000 0.00 0.00 0.00 3.01
138 139 3.435601 GGTGATGATGGCCCATTAAGTCT 60.436 47.826 0.00 0.00 0.00 3.24
139 140 3.567164 GTGATGATGGCCCATTAAGTCTG 59.433 47.826 0.00 0.00 0.00 3.51
140 141 3.459227 TGATGATGGCCCATTAAGTCTGA 59.541 43.478 0.00 0.00 0.00 3.27
141 142 4.079844 TGATGATGGCCCATTAAGTCTGAA 60.080 41.667 0.00 0.00 0.00 3.02
142 143 3.620488 TGATGGCCCATTAAGTCTGAAC 58.380 45.455 0.00 0.00 0.00 3.18
143 144 2.507407 TGGCCCATTAAGTCTGAACC 57.493 50.000 0.00 0.00 0.00 3.62
144 145 1.339631 TGGCCCATTAAGTCTGAACCG 60.340 52.381 0.00 0.00 0.00 4.44
145 146 1.379527 GCCCATTAAGTCTGAACCGG 58.620 55.000 0.00 0.00 0.00 5.28
146 147 2.017113 GCCCATTAAGTCTGAACCGGG 61.017 57.143 6.32 2.74 35.42 5.73
147 148 1.557832 CCCATTAAGTCTGAACCGGGA 59.442 52.381 6.32 0.00 34.10 5.14
148 149 2.172717 CCCATTAAGTCTGAACCGGGAT 59.827 50.000 6.32 0.00 34.10 3.85
149 150 3.371595 CCCATTAAGTCTGAACCGGGATT 60.372 47.826 6.32 0.00 34.10 3.01
150 151 3.877508 CCATTAAGTCTGAACCGGGATTC 59.122 47.826 6.32 1.37 0.00 2.52
151 152 4.513442 CATTAAGTCTGAACCGGGATTCA 58.487 43.478 6.32 6.89 37.08 2.57
152 153 4.627284 TTAAGTCTGAACCGGGATTCAA 57.373 40.909 6.32 0.00 38.12 2.69
153 154 3.502123 AAGTCTGAACCGGGATTCAAA 57.498 42.857 6.32 0.00 38.12 2.69
154 155 3.502123 AGTCTGAACCGGGATTCAAAA 57.498 42.857 6.32 0.00 38.12 2.44
155 156 4.034285 AGTCTGAACCGGGATTCAAAAT 57.966 40.909 6.32 0.00 38.12 1.82
156 157 4.407365 AGTCTGAACCGGGATTCAAAATT 58.593 39.130 6.32 0.00 38.12 1.82
157 158 4.832823 AGTCTGAACCGGGATTCAAAATTT 59.167 37.500 6.32 0.00 38.12 1.82
158 159 5.304357 AGTCTGAACCGGGATTCAAAATTTT 59.696 36.000 6.32 0.00 38.12 1.82
159 160 6.492087 AGTCTGAACCGGGATTCAAAATTTTA 59.508 34.615 6.32 0.00 38.12 1.52
160 161 7.014808 AGTCTGAACCGGGATTCAAAATTTTAA 59.985 33.333 6.32 0.00 38.12 1.52
161 162 7.654116 GTCTGAACCGGGATTCAAAATTTTAAA 59.346 33.333 6.32 0.00 38.12 1.52
162 163 8.204836 TCTGAACCGGGATTCAAAATTTTAAAA 58.795 29.630 6.32 2.51 38.12 1.52
163 164 8.371770 TGAACCGGGATTCAAAATTTTAAAAG 57.628 30.769 6.32 0.00 35.65 2.27
164 165 8.204836 TGAACCGGGATTCAAAATTTTAAAAGA 58.795 29.630 6.32 0.00 35.65 2.52
165 166 8.966069 AACCGGGATTCAAAATTTTAAAAGAA 57.034 26.923 6.32 3.66 0.00 2.52
166 167 9.567776 AACCGGGATTCAAAATTTTAAAAGAAT 57.432 25.926 6.32 11.82 0.00 2.40
191 192 6.675026 ACTCCTTTGTTTTTATTTACTCCGC 58.325 36.000 0.00 0.00 0.00 5.54
192 193 6.263617 ACTCCTTTGTTTTTATTTACTCCGCA 59.736 34.615 0.00 0.00 0.00 5.69
193 194 7.039993 ACTCCTTTGTTTTTATTTACTCCGCAT 60.040 33.333 0.00 0.00 0.00 4.73
194 195 7.662897 TCCTTTGTTTTTATTTACTCCGCATT 58.337 30.769 0.00 0.00 0.00 3.56
195 196 8.145122 TCCTTTGTTTTTATTTACTCCGCATTT 58.855 29.630 0.00 0.00 0.00 2.32
196 197 8.769891 CCTTTGTTTTTATTTACTCCGCATTTT 58.230 29.630 0.00 0.00 0.00 1.82
197 198 9.791838 CTTTGTTTTTATTTACTCCGCATTTTC 57.208 29.630 0.00 0.00 0.00 2.29
198 199 7.555639 TGTTTTTATTTACTCCGCATTTTCG 57.444 32.000 0.00 0.00 0.00 3.46
207 208 2.415697 CCGCATTTTCGGTTTGTCTT 57.584 45.000 0.00 0.00 44.18 3.01
208 209 3.546002 CCGCATTTTCGGTTTGTCTTA 57.454 42.857 0.00 0.00 44.18 2.10
209 210 3.891324 CCGCATTTTCGGTTTGTCTTAA 58.109 40.909 0.00 0.00 44.18 1.85
210 211 3.911964 CCGCATTTTCGGTTTGTCTTAAG 59.088 43.478 0.00 0.00 44.18 1.85
211 212 4.533222 CGCATTTTCGGTTTGTCTTAAGT 58.467 39.130 1.63 0.00 0.00 2.24
212 213 4.611366 CGCATTTTCGGTTTGTCTTAAGTC 59.389 41.667 1.63 0.00 0.00 3.01
213 214 5.516090 GCATTTTCGGTTTGTCTTAAGTCA 58.484 37.500 1.63 0.00 0.00 3.41
214 215 5.974751 GCATTTTCGGTTTGTCTTAAGTCAA 59.025 36.000 10.54 10.54 0.00 3.18
215 216 6.474102 GCATTTTCGGTTTGTCTTAAGTCAAA 59.526 34.615 19.60 19.60 32.37 2.69
216 217 7.305993 GCATTTTCGGTTTGTCTTAAGTCAAAG 60.306 37.037 22.66 14.71 34.70 2.77
217 218 5.744666 TTCGGTTTGTCTTAAGTCAAAGG 57.255 39.130 22.66 18.14 34.70 3.11
218 219 4.131596 TCGGTTTGTCTTAAGTCAAAGGG 58.868 43.478 22.66 17.88 34.70 3.95
219 220 3.881089 CGGTTTGTCTTAAGTCAAAGGGT 59.119 43.478 22.66 0.00 34.70 4.34
220 221 5.058490 CGGTTTGTCTTAAGTCAAAGGGTA 58.942 41.667 22.66 4.40 34.70 3.69
221 222 5.704053 CGGTTTGTCTTAAGTCAAAGGGTAT 59.296 40.000 22.66 0.00 34.70 2.73
222 223 6.348213 CGGTTTGTCTTAAGTCAAAGGGTATG 60.348 42.308 22.66 9.55 34.70 2.39
223 224 6.072119 GGTTTGTCTTAAGTCAAAGGGTATGG 60.072 42.308 22.66 0.00 34.70 2.74
224 225 4.585879 TGTCTTAAGTCAAAGGGTATGGC 58.414 43.478 1.63 0.00 0.00 4.40
225 226 4.288626 TGTCTTAAGTCAAAGGGTATGGCT 59.711 41.667 1.63 0.00 33.26 4.75
226 227 5.486063 TGTCTTAAGTCAAAGGGTATGGCTA 59.514 40.000 1.63 0.00 31.22 3.93
227 228 6.049790 GTCTTAAGTCAAAGGGTATGGCTAG 58.950 44.000 1.63 0.00 31.22 3.42
228 229 3.933861 AAGTCAAAGGGTATGGCTAGG 57.066 47.619 0.00 0.00 31.22 3.02
229 230 2.846950 AGTCAAAGGGTATGGCTAGGT 58.153 47.619 0.00 0.00 29.22 3.08
230 231 2.772515 AGTCAAAGGGTATGGCTAGGTC 59.227 50.000 0.00 0.00 29.22 3.85
231 232 2.772515 GTCAAAGGGTATGGCTAGGTCT 59.227 50.000 0.00 0.00 0.00 3.85
232 233 3.039011 TCAAAGGGTATGGCTAGGTCTC 58.961 50.000 0.00 0.00 0.00 3.36
233 234 2.771943 CAAAGGGTATGGCTAGGTCTCA 59.228 50.000 0.00 0.00 0.00 3.27
234 235 2.390225 AGGGTATGGCTAGGTCTCAG 57.610 55.000 0.00 0.00 0.00 3.35
235 236 1.576272 AGGGTATGGCTAGGTCTCAGT 59.424 52.381 0.00 0.00 0.00 3.41
236 237 1.964933 GGGTATGGCTAGGTCTCAGTC 59.035 57.143 0.00 0.00 0.00 3.51
237 238 1.609555 GGTATGGCTAGGTCTCAGTCG 59.390 57.143 0.00 0.00 0.00 4.18
238 239 2.573369 GTATGGCTAGGTCTCAGTCGA 58.427 52.381 0.00 0.00 0.00 4.20
239 240 1.394618 ATGGCTAGGTCTCAGTCGAC 58.605 55.000 7.70 7.70 0.00 4.20
240 241 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
241 242 0.736053 GGCTAGGTCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
269 270 8.316640 ACTTAATCAAGTCTCAATCAAGTGAC 57.683 34.615 0.00 0.00 41.25 3.67
270 271 7.933577 ACTTAATCAAGTCTCAATCAAGTGACA 59.066 33.333 0.00 0.00 41.25 3.58
271 272 8.853077 TTAATCAAGTCTCAATCAAGTGACAT 57.147 30.769 0.00 0.00 35.17 3.06
272 273 9.942850 TTAATCAAGTCTCAATCAAGTGACATA 57.057 29.630 0.00 0.00 35.17 2.29
273 274 8.853077 AATCAAGTCTCAATCAAGTGACATAA 57.147 30.769 0.00 0.00 35.17 1.90
274 275 7.658179 TCAAGTCTCAATCAAGTGACATAAC 57.342 36.000 0.00 0.00 35.17 1.89
275 276 7.216494 TCAAGTCTCAATCAAGTGACATAACA 58.784 34.615 0.00 0.00 35.17 2.41
276 277 7.879677 TCAAGTCTCAATCAAGTGACATAACAT 59.120 33.333 0.00 0.00 35.17 2.71
277 278 9.154847 CAAGTCTCAATCAAGTGACATAACATA 57.845 33.333 0.00 0.00 35.17 2.29
278 279 9.896645 AAGTCTCAATCAAGTGACATAACATAT 57.103 29.630 0.00 0.00 35.17 1.78
326 327 7.281991 AGAATTTTTGCATGAATCTTTACGC 57.718 32.000 0.00 0.00 0.00 4.42
327 328 7.092716 AGAATTTTTGCATGAATCTTTACGCT 58.907 30.769 0.00 0.00 0.00 5.07
328 329 8.243426 AGAATTTTTGCATGAATCTTTACGCTA 58.757 29.630 0.00 0.00 0.00 4.26
329 330 7.975866 ATTTTTGCATGAATCTTTACGCTAG 57.024 32.000 0.00 0.00 0.00 3.42
330 331 6.735678 TTTTGCATGAATCTTTACGCTAGA 57.264 33.333 0.00 0.00 0.00 2.43
331 332 6.925610 TTTGCATGAATCTTTACGCTAGAT 57.074 33.333 0.00 0.00 33.87 1.98
332 333 6.530913 TTGCATGAATCTTTACGCTAGATC 57.469 37.500 0.00 0.00 31.28 2.75
333 334 5.847304 TGCATGAATCTTTACGCTAGATCT 58.153 37.500 0.00 0.00 31.28 2.75
334 335 5.923114 TGCATGAATCTTTACGCTAGATCTC 59.077 40.000 0.00 0.00 31.28 2.75
335 336 5.923114 GCATGAATCTTTACGCTAGATCTCA 59.077 40.000 0.00 0.00 31.28 3.27
336 337 6.128956 GCATGAATCTTTACGCTAGATCTCAC 60.129 42.308 0.00 0.00 31.28 3.51
337 338 5.511571 TGAATCTTTACGCTAGATCTCACG 58.488 41.667 13.97 13.97 31.28 4.35
338 339 5.296035 TGAATCTTTACGCTAGATCTCACGA 59.704 40.000 20.49 5.25 31.28 4.35
339 340 5.752892 ATCTTTACGCTAGATCTCACGAA 57.247 39.130 20.49 9.87 0.00 3.85
340 341 5.752892 TCTTTACGCTAGATCTCACGAAT 57.247 39.130 20.49 5.31 0.00 3.34
341 342 6.856135 TCTTTACGCTAGATCTCACGAATA 57.144 37.500 20.49 4.48 0.00 1.75
342 343 7.436430 TCTTTACGCTAGATCTCACGAATAT 57.564 36.000 20.49 4.41 0.00 1.28
343 344 8.543862 TCTTTACGCTAGATCTCACGAATATA 57.456 34.615 20.49 3.59 0.00 0.86
344 345 8.996271 TCTTTACGCTAGATCTCACGAATATAA 58.004 33.333 20.49 8.47 0.00 0.98
345 346 8.945758 TTTACGCTAGATCTCACGAATATAAC 57.054 34.615 20.49 0.00 0.00 1.89
346 347 6.555812 ACGCTAGATCTCACGAATATAACA 57.444 37.500 20.49 0.00 0.00 2.41
347 348 7.147143 ACGCTAGATCTCACGAATATAACAT 57.853 36.000 20.49 0.00 0.00 2.71
348 349 7.244898 ACGCTAGATCTCACGAATATAACATC 58.755 38.462 20.49 0.00 0.00 3.06
349 350 6.409473 CGCTAGATCTCACGAATATAACATCG 59.591 42.308 10.90 4.88 44.33 3.84
350 351 7.465173 GCTAGATCTCACGAATATAACATCGA 58.535 38.462 0.00 0.00 41.43 3.59
351 352 7.427030 GCTAGATCTCACGAATATAACATCGAC 59.573 40.741 0.00 0.00 41.43 4.20
352 353 7.441890 AGATCTCACGAATATAACATCGACT 57.558 36.000 11.44 0.00 41.43 4.18
353 354 7.301789 AGATCTCACGAATATAACATCGACTG 58.698 38.462 11.44 0.00 41.43 3.51
354 355 6.613755 TCTCACGAATATAACATCGACTGA 57.386 37.500 11.44 6.20 41.43 3.41
355 356 6.659776 TCTCACGAATATAACATCGACTGAG 58.340 40.000 11.44 12.96 40.57 3.35
356 357 6.482308 TCTCACGAATATAACATCGACTGAGA 59.518 38.462 16.52 16.52 43.16 3.27
357 358 6.427974 TCACGAATATAACATCGACTGAGAC 58.572 40.000 11.44 0.00 41.43 3.36
358 359 6.037830 TCACGAATATAACATCGACTGAGACA 59.962 38.462 11.44 0.00 41.43 3.41
359 360 6.858478 CACGAATATAACATCGACTGAGACAT 59.142 38.462 11.44 0.00 41.43 3.06
360 361 8.015658 CACGAATATAACATCGACTGAGACATA 58.984 37.037 11.44 0.00 41.43 2.29
361 362 8.565416 ACGAATATAACATCGACTGAGACATAA 58.435 33.333 11.44 0.00 41.43 1.90
362 363 9.056306 CGAATATAACATCGACTGAGACATAAG 57.944 37.037 0.00 0.00 41.43 1.73
363 364 8.749841 AATATAACATCGACTGAGACATAAGC 57.250 34.615 0.00 0.00 0.00 3.09
364 365 4.456280 AACATCGACTGAGACATAAGCA 57.544 40.909 0.00 0.00 0.00 3.91
365 366 4.456280 ACATCGACTGAGACATAAGCAA 57.544 40.909 0.00 0.00 0.00 3.91
366 367 4.428209 ACATCGACTGAGACATAAGCAAG 58.572 43.478 0.00 0.00 0.00 4.01
367 368 4.081972 ACATCGACTGAGACATAAGCAAGT 60.082 41.667 0.00 0.00 0.00 3.16
368 369 4.098055 TCGACTGAGACATAAGCAAGTC 57.902 45.455 0.00 0.00 35.02 3.01
370 371 4.218635 TCGACTGAGACATAAGCAAGTCTT 59.781 41.667 0.00 0.00 44.61 3.01
371 372 5.414765 TCGACTGAGACATAAGCAAGTCTTA 59.585 40.000 0.00 0.00 44.61 2.10
375 376 5.641709 TGAGACATAAGCAAGTCTTAGTCG 58.358 41.667 0.00 0.00 44.61 4.18
376 377 5.414765 TGAGACATAAGCAAGTCTTAGTCGA 59.585 40.000 0.00 0.00 44.61 4.20
377 378 5.642686 AGACATAAGCAAGTCTTAGTCGAC 58.357 41.667 7.70 7.70 42.12 4.20
378 379 5.416326 AGACATAAGCAAGTCTTAGTCGACT 59.584 40.000 23.66 23.66 45.73 4.18
379 380 5.403246 ACATAAGCAAGTCTTAGTCGACTG 58.597 41.667 28.12 12.46 43.14 3.51
380 381 5.183331 ACATAAGCAAGTCTTAGTCGACTGA 59.817 40.000 28.12 19.13 43.14 3.41
381 382 3.840890 AGCAAGTCTTAGTCGACTGAG 57.159 47.619 26.80 26.80 43.14 3.35
382 383 3.413327 AGCAAGTCTTAGTCGACTGAGA 58.587 45.455 30.05 30.05 43.14 3.27
383 384 4.013728 AGCAAGTCTTAGTCGACTGAGAT 58.986 43.478 34.18 21.41 43.14 2.75
384 385 4.461081 AGCAAGTCTTAGTCGACTGAGATT 59.539 41.667 34.18 29.10 43.14 2.40
385 386 5.047660 AGCAAGTCTTAGTCGACTGAGATTT 60.048 40.000 34.18 32.05 43.14 2.17
386 387 6.151312 AGCAAGTCTTAGTCGACTGAGATTTA 59.849 38.462 32.94 16.75 43.14 1.40
387 388 6.470877 GCAAGTCTTAGTCGACTGAGATTTAG 59.529 42.308 32.94 27.73 43.14 1.85
388 389 6.126568 AGTCTTAGTCGACTGAGATTTAGC 57.873 41.667 34.18 23.58 42.39 3.09
389 390 5.648526 AGTCTTAGTCGACTGAGATTTAGCA 59.351 40.000 34.18 14.27 42.39 3.49
390 391 6.151312 AGTCTTAGTCGACTGAGATTTAGCAA 59.849 38.462 34.18 14.78 42.39 3.91
391 392 6.251801 GTCTTAGTCGACTGAGATTTAGCAAC 59.748 42.308 34.18 19.92 40.13 4.17
392 393 4.521130 AGTCGACTGAGATTTAGCAACA 57.479 40.909 19.30 0.00 0.00 3.33
393 394 4.238514 AGTCGACTGAGATTTAGCAACAC 58.761 43.478 19.30 0.00 0.00 3.32
394 395 4.021894 AGTCGACTGAGATTTAGCAACACT 60.022 41.667 19.30 0.00 0.00 3.55
395 396 5.183331 AGTCGACTGAGATTTAGCAACACTA 59.817 40.000 19.30 0.00 0.00 2.74
396 397 6.037098 GTCGACTGAGATTTAGCAACACTAT 58.963 40.000 8.70 0.00 0.00 2.12
397 398 7.067129 AGTCGACTGAGATTTAGCAACACTATA 59.933 37.037 19.30 0.00 0.00 1.31
404 405 9.719355 TGAGATTTAGCAACACTATAAGTCAAA 57.281 29.630 0.00 0.00 0.00 2.69
405 406 9.974750 GAGATTTAGCAACACTATAAGTCAAAC 57.025 33.333 0.00 0.00 0.00 2.93
562 566 9.447157 TTGGTCAATTTTTCAGAAGTTTGATTT 57.553 25.926 7.41 0.00 0.00 2.17
610 614 9.419297 GTAAATAAAAGCAAAGGAGTAAAAGGG 57.581 33.333 0.00 0.00 0.00 3.95
611 615 7.849322 AATAAAAGCAAAGGAGTAAAAGGGA 57.151 32.000 0.00 0.00 0.00 4.20
612 616 8.435931 AATAAAAGCAAAGGAGTAAAAGGGAT 57.564 30.769 0.00 0.00 0.00 3.85
613 617 6.747414 AAAAGCAAAGGAGTAAAAGGGATT 57.253 33.333 0.00 0.00 0.00 3.01
614 618 5.984695 AAGCAAAGGAGTAAAAGGGATTC 57.015 39.130 0.00 0.00 0.00 2.52
615 619 4.344978 AGCAAAGGAGTAAAAGGGATTCC 58.655 43.478 0.00 0.00 0.00 3.01
616 620 3.128764 GCAAAGGAGTAAAAGGGATTCCG 59.871 47.826 0.00 0.00 38.33 4.30
617 621 4.585879 CAAAGGAGTAAAAGGGATTCCGA 58.414 43.478 0.00 0.00 38.33 4.55
618 622 4.489306 AAGGAGTAAAAGGGATTCCGAG 57.511 45.455 0.00 0.00 38.33 4.63
619 623 3.451890 AGGAGTAAAAGGGATTCCGAGT 58.548 45.455 0.00 0.00 38.33 4.18
620 624 4.617593 AGGAGTAAAAGGGATTCCGAGTA 58.382 43.478 0.00 0.00 38.33 2.59
621 625 5.028131 AGGAGTAAAAGGGATTCCGAGTAA 58.972 41.667 0.00 0.00 38.33 2.24
622 626 5.486419 AGGAGTAAAAGGGATTCCGAGTAAA 59.514 40.000 0.00 0.00 38.33 2.01
623 627 6.013119 AGGAGTAAAAGGGATTCCGAGTAAAA 60.013 38.462 0.00 0.00 38.33 1.52
632 636 7.343357 AGGGATTCCGAGTAAAAATATGAACA 58.657 34.615 0.00 0.00 38.33 3.18
637 641 7.837202 TCCGAGTAAAAATATGAACAACGAT 57.163 32.000 0.00 0.00 0.00 3.73
638 642 8.259049 TCCGAGTAAAAATATGAACAACGATT 57.741 30.769 0.00 0.00 0.00 3.34
651 655 4.996788 ACAACGATTTAGGAGGTCGTAT 57.003 40.909 0.00 0.00 46.63 3.06
652 656 6.095300 TGAACAACGATTTAGGAGGTCGTATA 59.905 38.462 0.00 0.00 46.63 1.47
653 657 6.455360 ACAACGATTTAGGAGGTCGTATAA 57.545 37.500 0.00 0.00 46.63 0.98
654 658 6.501781 ACAACGATTTAGGAGGTCGTATAAG 58.498 40.000 0.00 0.00 46.63 1.73
655 659 5.118642 ACGATTTAGGAGGTCGTATAAGC 57.881 43.478 0.00 0.00 45.64 3.09
657 661 5.068198 ACGATTTAGGAGGTCGTATAAGCAA 59.932 40.000 0.00 0.00 45.64 3.91
658 662 6.157211 CGATTTAGGAGGTCGTATAAGCAAT 58.843 40.000 0.00 0.00 0.00 3.56
659 663 7.040201 ACGATTTAGGAGGTCGTATAAGCAATA 60.040 37.037 0.00 0.00 45.64 1.90
660 664 7.272948 CGATTTAGGAGGTCGTATAAGCAATAC 59.727 40.741 0.00 0.00 37.66 1.89
709 723 3.930229 CGGTCTCATCGTTTGGATTGTTA 59.070 43.478 0.00 0.00 31.28 2.41
791 805 0.601576 TGCCGTACGCTCACAATGTT 60.602 50.000 10.49 0.00 38.78 2.71
982 996 2.171840 ACGTATCCTCAGCAAGTCACT 58.828 47.619 0.00 0.00 0.00 3.41
985 999 3.378742 CGTATCCTCAGCAAGTCACTACT 59.621 47.826 0.00 0.00 37.65 2.57
999 1013 3.004862 TCACTACTCGTCGCAGATTACA 58.995 45.455 0.00 0.00 40.67 2.41
1123 1137 1.067416 CGGGCCTTCATCGAATCGA 59.933 57.895 8.12 8.12 41.13 3.59
1124 1138 0.941463 CGGGCCTTCATCGAATCGAG 60.941 60.000 12.00 3.75 39.91 4.04
1126 1140 0.601311 GGCCTTCATCGAATCGAGGG 60.601 60.000 17.24 13.39 39.91 4.30
1704 1822 1.040339 CGCCTACCTCTTCCTGCTCT 61.040 60.000 0.00 0.00 0.00 4.09
2276 2839 6.881065 TGCTGATTAGTTAGCTTCTGTGATTT 59.119 34.615 3.69 0.00 40.52 2.17
2278 2841 7.148340 GCTGATTAGTTAGCTTCTGTGATTTGT 60.148 37.037 0.00 0.00 36.99 2.83
2371 2934 0.304705 GGCTATGCATGTTCGAACCG 59.695 55.000 24.78 16.75 0.00 4.44
2432 2998 9.765795 CCTGCTTATTTACCCTAGCATATATAC 57.234 37.037 0.00 0.00 42.21 1.47
2456 3048 1.142060 CAGCCGGATATTTACCCCACA 59.858 52.381 5.05 0.00 0.00 4.17
2459 3051 3.117284 AGCCGGATATTTACCCCACATTT 60.117 43.478 5.05 0.00 0.00 2.32
2463 3055 5.128008 CCGGATATTTACCCCACATTTGTTT 59.872 40.000 0.00 0.00 0.00 2.83
2565 3260 3.901844 AGAGTCTGGCTGTACAGGTAAAA 59.098 43.478 23.95 0.00 38.98 1.52
2602 3300 6.539649 TCGAGACACCAAAGTAAGATTTTG 57.460 37.500 0.00 0.00 35.75 2.44
2604 3302 6.018262 TCGAGACACCAAAGTAAGATTTTGTG 60.018 38.462 2.86 2.86 40.08 3.33
2716 3516 5.104402 TGTCAAGGATCTCAATCTGGCAATA 60.104 40.000 0.00 0.00 32.12 1.90
2994 3837 4.742201 CCACCGGCGGTCTCAGTG 62.742 72.222 31.82 17.09 31.02 3.66
3012 3855 1.601759 GTGGCGCCCATGAGCATAT 60.602 57.895 26.77 0.00 39.30 1.78
3016 3859 0.321564 GCGCCCATGAGCATATACCA 60.322 55.000 0.00 0.00 37.24 3.25
3021 3864 2.639347 CCCATGAGCATATACCACCAGA 59.361 50.000 0.00 0.00 0.00 3.86
3161 4013 6.307776 TGATTTATTGGTCCACCTTGTGTAA 58.692 36.000 0.00 0.00 36.82 2.41
3236 4095 4.244862 CATTATGTCTTTTTGTGGGTGCC 58.755 43.478 0.00 0.00 0.00 5.01
3272 4131 9.418045 GCTTAGCATGGTTAAATAAAGTTTCAA 57.582 29.630 1.12 0.00 0.00 2.69
3296 4155 0.694771 TCAAGCCCATCTGTCTGCTT 59.305 50.000 0.00 0.00 44.40 3.91
3302 4161 3.019564 GCCCATCTGTCTGCTTAATGTT 58.980 45.455 0.00 0.00 0.00 2.71
3335 4194 8.312669 AGATACTGACTAAGTTTCTAGCCAAT 57.687 34.615 0.00 0.00 43.10 3.16
3445 7511 7.758980 GGTGCTTCATGAGATACATCATACTAG 59.241 40.741 0.00 0.00 37.84 2.57
3457 7523 4.202202 ACATCATACTAGACAAGCTGGAGC 60.202 45.833 0.00 0.00 42.49 4.70
3539 7638 2.945668 GTGCCTGGATGATGGAAACTAC 59.054 50.000 0.00 0.00 0.00 2.73
3552 8492 3.575256 TGGAAACTACGAGAGGCACTTTA 59.425 43.478 0.00 0.00 41.55 1.85
3553 8493 4.222145 TGGAAACTACGAGAGGCACTTTAT 59.778 41.667 0.00 0.00 41.55 1.40
3570 8510 7.061789 GGCACTTTATTTTCCGTTTACAATCTG 59.938 37.037 0.00 0.00 0.00 2.90
3675 8615 4.848357 ACAATCTCACTGGGTTCATTAGG 58.152 43.478 0.00 0.00 0.00 2.69
3677 8617 2.196595 TCTCACTGGGTTCATTAGGGG 58.803 52.381 0.00 0.00 0.00 4.79
3686 8626 4.017126 GGGTTCATTAGGGGTCAAGAAAG 58.983 47.826 0.00 0.00 0.00 2.62
3694 8634 9.144298 TCATTAGGGGTCAAGAAAGTATAGTAG 57.856 37.037 0.00 0.00 0.00 2.57
3705 8645 5.247564 AGAAAGTATAGTAGTTGTGGGTGCA 59.752 40.000 0.00 0.00 0.00 4.57
3707 8647 2.403252 ATAGTAGTTGTGGGTGCAGC 57.597 50.000 7.55 7.55 0.00 5.25
3713 8653 1.077140 TTGTGGGTGCAGCTGTTGA 60.077 52.632 16.64 0.00 0.00 3.18
3717 8657 0.178995 TGGGTGCAGCTGTTGATCAA 60.179 50.000 16.64 3.38 0.00 2.57
3722 8662 3.488721 GGTGCAGCTGTTGATCAATGATC 60.489 47.826 16.64 15.86 39.31 2.92
3725 8665 3.557185 GCAGCTGTTGATCAATGATCGTA 59.443 43.478 16.64 6.30 41.51 3.43
3792 8732 1.422531 AGGGAAATTGTTGCTTGGCA 58.577 45.000 0.00 0.00 36.47 4.92
3793 8733 1.980036 AGGGAAATTGTTGCTTGGCAT 59.020 42.857 0.00 0.00 38.76 4.40
3807 8747 3.306294 GCTTGGCATTAAACCTCTGCTTT 60.306 43.478 0.00 0.00 36.18 3.51
3808 8748 3.940209 TGGCATTAAACCTCTGCTTTG 57.060 42.857 0.00 0.00 36.18 2.77
3826 8766 6.267496 GCTTTGGAGCCTTTTAGACAATTA 57.733 37.500 0.00 0.00 43.29 1.40
3868 8808 4.734854 CGTGCTACATCAAATTGGTATTGC 59.265 41.667 0.00 0.00 0.00 3.56
3869 8809 5.649557 GTGCTACATCAAATTGGTATTGCA 58.350 37.500 0.00 0.00 0.00 4.08
3870 8810 6.098679 GTGCTACATCAAATTGGTATTGCAA 58.901 36.000 0.00 0.00 0.00 4.08
3871 8811 6.589523 GTGCTACATCAAATTGGTATTGCAAA 59.410 34.615 1.71 0.00 0.00 3.68
3872 8812 7.117523 GTGCTACATCAAATTGGTATTGCAAAA 59.882 33.333 1.71 0.00 0.00 2.44
3873 8813 7.658982 TGCTACATCAAATTGGTATTGCAAAAA 59.341 29.630 1.71 0.00 0.00 1.94
3879 8820 8.097078 TCAAATTGGTATTGCAAAAATTGGAG 57.903 30.769 1.71 3.18 30.85 3.86
3891 8832 9.558396 TTGCAAAAATTGGAGAATACAGATTTT 57.442 25.926 0.00 0.00 30.85 1.82
3907 8848 9.729281 ATACAGATTTTTACGTAAGAAAAGGGA 57.271 29.630 14.41 5.11 43.62 4.20
3950 8891 9.988350 GTGTAATATCAAGTTGTAGTCCAAATG 57.012 33.333 2.11 0.00 34.07 2.32
3956 8897 5.530915 TCAAGTTGTAGTCCAAATGTCAAGG 59.469 40.000 2.11 0.00 34.07 3.61
3990 8931 7.040755 ACGAACAAACTATGATGTGGAATTCAA 60.041 33.333 7.93 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.347490 CCCCGGCGATCCCTATTG 59.653 66.667 9.30 0.00 0.00 1.90
3 4 3.637273 GCCCCGGCGATCCCTATT 61.637 66.667 9.30 0.00 0.00 1.73
15 16 1.140375 GTACAAGACCGTAGCCCCG 59.860 63.158 0.00 0.00 0.00 5.73
16 17 0.900421 AAGTACAAGACCGTAGCCCC 59.100 55.000 0.00 0.00 0.00 5.80
17 18 2.028748 TGAAAGTACAAGACCGTAGCCC 60.029 50.000 0.00 0.00 0.00 5.19
18 19 3.251571 CTGAAAGTACAAGACCGTAGCC 58.748 50.000 0.00 0.00 0.00 3.93
33 34 5.334879 CGGTTGGAAATAAGGACACTGAAAG 60.335 44.000 0.00 0.00 42.29 2.62
34 35 4.517453 CGGTTGGAAATAAGGACACTGAAA 59.483 41.667 0.00 0.00 0.00 2.69
35 36 4.069304 CGGTTGGAAATAAGGACACTGAA 58.931 43.478 0.00 0.00 0.00 3.02
36 37 3.558321 CCGGTTGGAAATAAGGACACTGA 60.558 47.826 0.00 0.00 37.49 3.41
37 38 2.747446 CCGGTTGGAAATAAGGACACTG 59.253 50.000 0.00 0.00 37.49 3.66
38 39 2.640826 TCCGGTTGGAAATAAGGACACT 59.359 45.455 0.00 0.00 42.85 3.55
39 40 3.062122 TCCGGTTGGAAATAAGGACAC 57.938 47.619 0.00 0.00 42.85 3.67
50 51 0.906775 GTAATCTGGGTCCGGTTGGA 59.093 55.000 0.00 0.00 43.88 3.53
51 52 0.616371 TGTAATCTGGGTCCGGTTGG 59.384 55.000 0.00 0.00 0.00 3.77
52 53 1.002659 TGTGTAATCTGGGTCCGGTTG 59.997 52.381 0.00 0.00 0.00 3.77
53 54 1.354101 TGTGTAATCTGGGTCCGGTT 58.646 50.000 0.00 0.00 0.00 4.44
54 55 1.580059 ATGTGTAATCTGGGTCCGGT 58.420 50.000 0.00 0.00 0.00 5.28
55 56 2.698797 AGTATGTGTAATCTGGGTCCGG 59.301 50.000 0.00 0.00 0.00 5.14
56 57 4.402056 AAGTATGTGTAATCTGGGTCCG 57.598 45.455 0.00 0.00 0.00 4.79
57 58 4.881850 CCAAAGTATGTGTAATCTGGGTCC 59.118 45.833 0.00 0.00 0.00 4.46
58 59 4.335594 GCCAAAGTATGTGTAATCTGGGTC 59.664 45.833 0.00 0.00 0.00 4.46
59 60 4.018415 AGCCAAAGTATGTGTAATCTGGGT 60.018 41.667 0.00 0.00 0.00 4.51
60 61 4.526970 AGCCAAAGTATGTGTAATCTGGG 58.473 43.478 0.00 0.00 0.00 4.45
61 62 6.349300 ACTAGCCAAAGTATGTGTAATCTGG 58.651 40.000 0.00 0.00 0.00 3.86
62 63 6.480320 GGACTAGCCAAAGTATGTGTAATCTG 59.520 42.308 0.00 0.00 36.34 2.90
63 64 6.583562 GGACTAGCCAAAGTATGTGTAATCT 58.416 40.000 0.00 0.00 36.34 2.40
64 65 5.462398 CGGACTAGCCAAAGTATGTGTAATC 59.538 44.000 0.00 0.00 35.94 1.75
65 66 5.357257 CGGACTAGCCAAAGTATGTGTAAT 58.643 41.667 0.00 0.00 35.94 1.89
66 67 4.382254 CCGGACTAGCCAAAGTATGTGTAA 60.382 45.833 0.00 0.00 35.94 2.41
67 68 3.131577 CCGGACTAGCCAAAGTATGTGTA 59.868 47.826 0.00 0.00 35.94 2.90
68 69 2.093658 CCGGACTAGCCAAAGTATGTGT 60.094 50.000 0.00 0.00 35.94 3.72
69 70 2.167693 TCCGGACTAGCCAAAGTATGTG 59.832 50.000 0.00 0.00 35.94 3.21
70 71 2.463752 TCCGGACTAGCCAAAGTATGT 58.536 47.619 0.00 0.00 35.94 2.29
71 72 3.118738 AGTTCCGGACTAGCCAAAGTATG 60.119 47.826 1.83 0.00 36.65 2.39
72 73 3.105283 AGTTCCGGACTAGCCAAAGTAT 58.895 45.455 1.83 0.00 36.65 2.12
73 74 2.532843 AGTTCCGGACTAGCCAAAGTA 58.467 47.619 1.83 0.00 36.65 2.24
74 75 1.349067 AGTTCCGGACTAGCCAAAGT 58.651 50.000 1.83 0.00 36.65 2.66
75 76 2.076863 CAAGTTCCGGACTAGCCAAAG 58.923 52.381 1.83 0.00 37.72 2.77
76 77 1.418637 ACAAGTTCCGGACTAGCCAAA 59.581 47.619 1.83 0.00 37.72 3.28
77 78 1.053424 ACAAGTTCCGGACTAGCCAA 58.947 50.000 1.83 0.00 37.72 4.52
78 79 1.822990 CTACAAGTTCCGGACTAGCCA 59.177 52.381 1.83 0.00 37.72 4.75
79 80 1.471153 GCTACAAGTTCCGGACTAGCC 60.471 57.143 1.83 0.00 37.72 3.93
80 81 1.471153 GGCTACAAGTTCCGGACTAGC 60.471 57.143 1.83 10.72 37.72 3.42
81 82 1.136500 GGGCTACAAGTTCCGGACTAG 59.864 57.143 1.83 0.93 37.72 2.57
82 83 1.188863 GGGCTACAAGTTCCGGACTA 58.811 55.000 1.83 0.00 37.72 2.59
83 84 0.834687 TGGGCTACAAGTTCCGGACT 60.835 55.000 1.83 1.45 41.47 3.85
84 85 0.035739 TTGGGCTACAAGTTCCGGAC 59.964 55.000 1.83 0.00 33.18 4.79
85 86 2.454369 TTGGGCTACAAGTTCCGGA 58.546 52.632 0.00 0.00 33.18 5.14
93 94 2.656947 AGAAAGCACTTGGGCTACAA 57.343 45.000 0.00 0.00 45.07 2.41
94 95 4.141711 CCTATAGAAAGCACTTGGGCTACA 60.142 45.833 0.00 0.00 45.07 2.74
95 96 4.141688 ACCTATAGAAAGCACTTGGGCTAC 60.142 45.833 0.00 0.00 45.07 3.58
96 97 4.037927 ACCTATAGAAAGCACTTGGGCTA 58.962 43.478 0.00 0.00 45.07 3.93
98 99 2.945668 CACCTATAGAAAGCACTTGGGC 59.054 50.000 0.00 0.00 0.00 5.36
99 100 4.487714 TCACCTATAGAAAGCACTTGGG 57.512 45.455 0.00 0.00 0.00 4.12
100 101 5.674525 TCATCACCTATAGAAAGCACTTGG 58.325 41.667 0.00 0.00 0.00 3.61
101 102 6.204301 CCATCATCACCTATAGAAAGCACTTG 59.796 42.308 0.00 0.00 0.00 3.16
102 103 6.294473 CCATCATCACCTATAGAAAGCACTT 58.706 40.000 0.00 0.00 0.00 3.16
103 104 5.744300 GCCATCATCACCTATAGAAAGCACT 60.744 44.000 0.00 0.00 0.00 4.40
104 105 4.453819 GCCATCATCACCTATAGAAAGCAC 59.546 45.833 0.00 0.00 0.00 4.40
105 106 4.505566 GGCCATCATCACCTATAGAAAGCA 60.506 45.833 0.00 0.00 0.00 3.91
106 107 4.006319 GGCCATCATCACCTATAGAAAGC 58.994 47.826 0.00 0.00 0.00 3.51
107 108 4.042062 TGGGCCATCATCACCTATAGAAAG 59.958 45.833 0.00 0.00 0.00 2.62
108 109 3.980022 TGGGCCATCATCACCTATAGAAA 59.020 43.478 0.00 0.00 0.00 2.52
109 110 3.597182 TGGGCCATCATCACCTATAGAA 58.403 45.455 0.00 0.00 0.00 2.10
110 111 3.274281 TGGGCCATCATCACCTATAGA 57.726 47.619 0.00 0.00 0.00 1.98
111 112 4.581309 AATGGGCCATCATCACCTATAG 57.419 45.455 21.48 0.00 0.00 1.31
112 113 5.551583 ACTTAATGGGCCATCATCACCTATA 59.448 40.000 21.48 1.74 0.00 1.31
113 114 4.354987 ACTTAATGGGCCATCATCACCTAT 59.645 41.667 21.48 2.84 0.00 2.57
114 115 3.721575 ACTTAATGGGCCATCATCACCTA 59.278 43.478 21.48 3.36 0.00 3.08
115 116 2.515429 ACTTAATGGGCCATCATCACCT 59.485 45.455 21.48 4.49 0.00 4.00
116 117 2.887152 GACTTAATGGGCCATCATCACC 59.113 50.000 21.48 4.31 0.00 4.02
117 118 3.567164 CAGACTTAATGGGCCATCATCAC 59.433 47.826 21.48 11.66 0.00 3.06
118 119 3.459227 TCAGACTTAATGGGCCATCATCA 59.541 43.478 21.48 2.57 0.00 3.07
119 120 4.090761 TCAGACTTAATGGGCCATCATC 57.909 45.455 21.48 14.38 0.00 2.92
120 121 4.210331 GTTCAGACTTAATGGGCCATCAT 58.790 43.478 21.48 7.83 0.00 2.45
121 122 3.620488 GTTCAGACTTAATGGGCCATCA 58.380 45.455 21.48 0.72 0.00 3.07
122 123 2.952310 GGTTCAGACTTAATGGGCCATC 59.048 50.000 21.48 7.84 0.00 3.51
123 124 2.683742 CGGTTCAGACTTAATGGGCCAT 60.684 50.000 14.78 14.78 0.00 4.40
124 125 1.339631 CGGTTCAGACTTAATGGGCCA 60.340 52.381 9.61 9.61 0.00 5.36
125 126 1.379527 CGGTTCAGACTTAATGGGCC 58.620 55.000 0.00 0.00 0.00 5.80
126 127 1.379527 CCGGTTCAGACTTAATGGGC 58.620 55.000 0.00 0.00 0.00 5.36
127 128 1.557832 TCCCGGTTCAGACTTAATGGG 59.442 52.381 0.00 4.14 36.72 4.00
128 129 3.560636 ATCCCGGTTCAGACTTAATGG 57.439 47.619 0.00 0.00 0.00 3.16
129 130 4.513442 TGAATCCCGGTTCAGACTTAATG 58.487 43.478 0.00 0.00 33.41 1.90
130 131 4.837093 TGAATCCCGGTTCAGACTTAAT 57.163 40.909 0.00 0.00 33.41 1.40
131 132 4.627284 TTGAATCCCGGTTCAGACTTAA 57.373 40.909 7.48 0.00 39.13 1.85
132 133 4.627284 TTTGAATCCCGGTTCAGACTTA 57.373 40.909 7.48 0.00 39.13 2.24
133 134 3.502123 TTTGAATCCCGGTTCAGACTT 57.498 42.857 7.48 0.00 39.13 3.01
134 135 3.502123 TTTTGAATCCCGGTTCAGACT 57.498 42.857 7.48 0.00 39.13 3.24
135 136 4.783764 AATTTTGAATCCCGGTTCAGAC 57.216 40.909 7.48 0.00 39.13 3.51
136 137 5.799827 AAAATTTTGAATCCCGGTTCAGA 57.200 34.783 1.75 1.31 39.13 3.27
137 138 7.954788 TTTAAAATTTTGAATCCCGGTTCAG 57.045 32.000 13.76 0.00 39.13 3.02
138 139 8.204836 TCTTTTAAAATTTTGAATCCCGGTTCA 58.795 29.630 13.76 1.28 36.38 3.18
139 140 8.596271 TCTTTTAAAATTTTGAATCCCGGTTC 57.404 30.769 13.76 0.00 0.00 3.62
140 141 8.966069 TTCTTTTAAAATTTTGAATCCCGGTT 57.034 26.923 13.76 0.00 0.00 4.44
165 166 8.456471 GCGGAGTAAATAAAAACAAAGGAGTAT 58.544 33.333 0.00 0.00 0.00 2.12
166 167 7.444792 TGCGGAGTAAATAAAAACAAAGGAGTA 59.555 33.333 0.00 0.00 0.00 2.59
167 168 6.263617 TGCGGAGTAAATAAAAACAAAGGAGT 59.736 34.615 0.00 0.00 0.00 3.85
168 169 6.674066 TGCGGAGTAAATAAAAACAAAGGAG 58.326 36.000 0.00 0.00 0.00 3.69
169 170 6.636562 TGCGGAGTAAATAAAAACAAAGGA 57.363 33.333 0.00 0.00 0.00 3.36
170 171 7.883229 AATGCGGAGTAAATAAAAACAAAGG 57.117 32.000 0.00 0.00 0.00 3.11
171 172 9.791838 GAAAATGCGGAGTAAATAAAAACAAAG 57.208 29.630 0.00 0.00 0.00 2.77
172 173 8.480853 CGAAAATGCGGAGTAAATAAAAACAAA 58.519 29.630 0.00 0.00 0.00 2.83
173 174 7.998141 CGAAAATGCGGAGTAAATAAAAACAA 58.002 30.769 0.00 0.00 0.00 2.83
174 175 7.555639 CGAAAATGCGGAGTAAATAAAAACA 57.444 32.000 0.00 0.00 0.00 2.83
189 190 4.533222 ACTTAAGACAAACCGAAAATGCG 58.467 39.130 10.09 0.00 0.00 4.73
190 191 5.516090 TGACTTAAGACAAACCGAAAATGC 58.484 37.500 10.09 0.00 0.00 3.56
191 192 7.167468 CCTTTGACTTAAGACAAACCGAAAATG 59.833 37.037 23.25 13.77 35.47 2.32
192 193 7.200455 CCTTTGACTTAAGACAAACCGAAAAT 58.800 34.615 23.25 0.00 35.47 1.82
193 194 6.404954 CCCTTTGACTTAAGACAAACCGAAAA 60.405 38.462 23.25 7.22 35.47 2.29
194 195 5.066764 CCCTTTGACTTAAGACAAACCGAAA 59.933 40.000 23.25 7.81 35.47 3.46
195 196 4.577283 CCCTTTGACTTAAGACAAACCGAA 59.423 41.667 23.25 8.40 35.47 4.30
196 197 4.131596 CCCTTTGACTTAAGACAAACCGA 58.868 43.478 23.25 8.70 35.47 4.69
197 198 3.881089 ACCCTTTGACTTAAGACAAACCG 59.119 43.478 23.25 18.50 35.47 4.44
198 199 6.072119 CCATACCCTTTGACTTAAGACAAACC 60.072 42.308 23.25 2.21 35.47 3.27
199 200 6.569801 GCCATACCCTTTGACTTAAGACAAAC 60.570 42.308 23.25 11.40 35.47 2.93
200 201 5.475564 GCCATACCCTTTGACTTAAGACAAA 59.524 40.000 24.68 24.68 37.36 2.83
201 202 5.007682 GCCATACCCTTTGACTTAAGACAA 58.992 41.667 15.00 15.00 0.00 3.18
202 203 4.288626 AGCCATACCCTTTGACTTAAGACA 59.711 41.667 10.09 6.50 0.00 3.41
203 204 4.844884 AGCCATACCCTTTGACTTAAGAC 58.155 43.478 10.09 3.35 0.00 3.01
204 205 5.130477 CCTAGCCATACCCTTTGACTTAAGA 59.870 44.000 10.09 0.00 0.00 2.10
205 206 5.104485 ACCTAGCCATACCCTTTGACTTAAG 60.104 44.000 0.00 0.00 0.00 1.85
206 207 4.786454 ACCTAGCCATACCCTTTGACTTAA 59.214 41.667 0.00 0.00 0.00 1.85
207 208 4.368067 ACCTAGCCATACCCTTTGACTTA 58.632 43.478 0.00 0.00 0.00 2.24
208 209 3.190439 ACCTAGCCATACCCTTTGACTT 58.810 45.455 0.00 0.00 0.00 3.01
209 210 2.772515 GACCTAGCCATACCCTTTGACT 59.227 50.000 0.00 0.00 0.00 3.41
210 211 2.772515 AGACCTAGCCATACCCTTTGAC 59.227 50.000 0.00 0.00 0.00 3.18
211 212 3.039011 GAGACCTAGCCATACCCTTTGA 58.961 50.000 0.00 0.00 0.00 2.69
212 213 2.771943 TGAGACCTAGCCATACCCTTTG 59.228 50.000 0.00 0.00 0.00 2.77
213 214 3.041946 CTGAGACCTAGCCATACCCTTT 58.958 50.000 0.00 0.00 0.00 3.11
214 215 2.022918 ACTGAGACCTAGCCATACCCTT 60.023 50.000 0.00 0.00 0.00 3.95
215 216 1.576272 ACTGAGACCTAGCCATACCCT 59.424 52.381 0.00 0.00 0.00 4.34
216 217 1.964933 GACTGAGACCTAGCCATACCC 59.035 57.143 0.00 0.00 0.00 3.69
217 218 1.609555 CGACTGAGACCTAGCCATACC 59.390 57.143 0.00 0.00 0.00 2.73
218 219 2.291190 GTCGACTGAGACCTAGCCATAC 59.709 54.545 8.70 0.00 35.22 2.39
219 220 2.172930 AGTCGACTGAGACCTAGCCATA 59.827 50.000 19.30 0.00 41.83 2.74
220 221 1.064314 AGTCGACTGAGACCTAGCCAT 60.064 52.381 19.30 0.00 41.83 4.40
221 222 0.328592 AGTCGACTGAGACCTAGCCA 59.671 55.000 19.30 0.00 41.83 4.75
222 223 0.736053 CAGTCGACTGAGACCTAGCC 59.264 60.000 36.73 0.00 46.59 3.93
231 232 5.473846 ACTTGATTAAGTCTCAGTCGACTGA 59.526 40.000 38.24 38.24 45.53 3.41
232 233 5.704888 ACTTGATTAAGTCTCAGTCGACTG 58.295 41.667 34.76 34.76 43.53 3.51
233 234 5.968528 ACTTGATTAAGTCTCAGTCGACT 57.031 39.130 13.58 13.58 43.53 4.18
245 246 8.315391 TGTCACTTGATTGAGACTTGATTAAG 57.685 34.615 0.00 0.00 39.86 1.85
246 247 8.853077 ATGTCACTTGATTGAGACTTGATTAA 57.147 30.769 0.00 0.00 32.41 1.40
247 248 9.942850 TTATGTCACTTGATTGAGACTTGATTA 57.057 29.630 0.00 0.00 32.41 1.75
248 249 8.725148 GTTATGTCACTTGATTGAGACTTGATT 58.275 33.333 0.00 0.00 32.41 2.57
249 250 7.879677 TGTTATGTCACTTGATTGAGACTTGAT 59.120 33.333 0.00 0.00 32.41 2.57
250 251 7.216494 TGTTATGTCACTTGATTGAGACTTGA 58.784 34.615 0.00 0.00 32.41 3.02
251 252 7.425577 TGTTATGTCACTTGATTGAGACTTG 57.574 36.000 0.00 0.00 32.41 3.16
252 253 9.896645 ATATGTTATGTCACTTGATTGAGACTT 57.103 29.630 0.00 0.00 32.41 3.01
300 301 8.223100 GCGTAAAGATTCATGCAAAAATTCTTT 58.777 29.630 15.00 15.00 0.00 2.52
301 302 7.599998 AGCGTAAAGATTCATGCAAAAATTCTT 59.400 29.630 0.00 0.00 0.00 2.52
302 303 7.092716 AGCGTAAAGATTCATGCAAAAATTCT 58.907 30.769 0.00 0.00 0.00 2.40
303 304 7.281991 AGCGTAAAGATTCATGCAAAAATTC 57.718 32.000 0.00 0.00 0.00 2.17
304 305 8.243426 TCTAGCGTAAAGATTCATGCAAAAATT 58.757 29.630 0.00 0.00 0.00 1.82
305 306 7.761409 TCTAGCGTAAAGATTCATGCAAAAAT 58.239 30.769 0.00 0.00 0.00 1.82
306 307 7.139896 TCTAGCGTAAAGATTCATGCAAAAA 57.860 32.000 0.00 0.00 0.00 1.94
307 308 6.735678 TCTAGCGTAAAGATTCATGCAAAA 57.264 33.333 0.00 0.00 0.00 2.44
308 309 6.763135 AGATCTAGCGTAAAGATTCATGCAAA 59.237 34.615 0.00 0.00 33.82 3.68
309 310 6.283694 AGATCTAGCGTAAAGATTCATGCAA 58.716 36.000 0.00 0.00 33.82 4.08
310 311 5.847304 AGATCTAGCGTAAAGATTCATGCA 58.153 37.500 0.00 0.00 33.82 3.96
311 312 5.923114 TGAGATCTAGCGTAAAGATTCATGC 59.077 40.000 0.00 0.00 33.82 4.06
312 313 6.087423 CGTGAGATCTAGCGTAAAGATTCATG 59.913 42.308 0.00 0.00 33.82 3.07
313 314 6.017026 TCGTGAGATCTAGCGTAAAGATTCAT 60.017 38.462 15.18 0.00 33.82 2.57
314 315 5.296035 TCGTGAGATCTAGCGTAAAGATTCA 59.704 40.000 15.18 0.00 33.82 2.57
315 316 5.749620 TCGTGAGATCTAGCGTAAAGATTC 58.250 41.667 15.18 0.00 33.82 2.52
316 317 5.752892 TCGTGAGATCTAGCGTAAAGATT 57.247 39.130 15.18 0.00 33.82 2.40
317 318 5.752892 TTCGTGAGATCTAGCGTAAAGAT 57.247 39.130 15.18 0.00 41.60 2.40
318 319 5.752892 ATTCGTGAGATCTAGCGTAAAGA 57.247 39.130 15.18 0.00 41.60 2.52
319 320 9.053135 GTTATATTCGTGAGATCTAGCGTAAAG 57.947 37.037 15.18 0.00 41.60 1.85
320 321 8.562052 TGTTATATTCGTGAGATCTAGCGTAAA 58.438 33.333 15.18 6.64 41.60 2.01
321 322 8.091385 TGTTATATTCGTGAGATCTAGCGTAA 57.909 34.615 15.18 10.18 41.60 3.18
322 323 7.662604 TGTTATATTCGTGAGATCTAGCGTA 57.337 36.000 15.18 8.62 41.60 4.42
323 324 6.555812 TGTTATATTCGTGAGATCTAGCGT 57.444 37.500 15.18 3.54 41.60 5.07
324 325 6.409473 CGATGTTATATTCGTGAGATCTAGCG 59.591 42.308 10.97 10.97 41.60 4.26
325 326 7.427030 GTCGATGTTATATTCGTGAGATCTAGC 59.573 40.741 0.00 0.00 41.60 3.42
326 327 8.661257 AGTCGATGTTATATTCGTGAGATCTAG 58.339 37.037 0.00 0.00 41.60 2.43
327 328 8.443937 CAGTCGATGTTATATTCGTGAGATCTA 58.556 37.037 0.00 0.00 41.60 1.98
328 329 7.173390 TCAGTCGATGTTATATTCGTGAGATCT 59.827 37.037 0.00 0.00 41.60 2.75
329 330 7.298854 TCAGTCGATGTTATATTCGTGAGATC 58.701 38.462 0.00 0.00 41.60 2.75
330 331 7.173390 TCTCAGTCGATGTTATATTCGTGAGAT 59.827 37.037 11.10 0.00 40.00 2.75
331 332 6.482308 TCTCAGTCGATGTTATATTCGTGAGA 59.518 38.462 11.10 11.10 41.33 3.27
332 333 6.575572 GTCTCAGTCGATGTTATATTCGTGAG 59.424 42.308 8.03 8.03 38.66 3.51
333 334 6.037830 TGTCTCAGTCGATGTTATATTCGTGA 59.962 38.462 0.00 0.00 36.74 4.35
334 335 6.199393 TGTCTCAGTCGATGTTATATTCGTG 58.801 40.000 0.00 0.00 36.74 4.35
335 336 6.373186 TGTCTCAGTCGATGTTATATTCGT 57.627 37.500 0.00 0.00 36.74 3.85
336 337 8.950403 TTATGTCTCAGTCGATGTTATATTCG 57.050 34.615 0.00 0.00 36.72 3.34
337 338 8.855279 GCTTATGTCTCAGTCGATGTTATATTC 58.145 37.037 0.00 0.00 0.00 1.75
338 339 8.360390 TGCTTATGTCTCAGTCGATGTTATATT 58.640 33.333 0.00 0.00 0.00 1.28
339 340 7.886338 TGCTTATGTCTCAGTCGATGTTATAT 58.114 34.615 0.00 0.00 0.00 0.86
340 341 7.272037 TGCTTATGTCTCAGTCGATGTTATA 57.728 36.000 0.00 0.00 0.00 0.98
341 342 6.149129 TGCTTATGTCTCAGTCGATGTTAT 57.851 37.500 0.00 0.00 0.00 1.89
342 343 5.576447 TGCTTATGTCTCAGTCGATGTTA 57.424 39.130 0.00 0.00 0.00 2.41
343 344 4.456280 TGCTTATGTCTCAGTCGATGTT 57.544 40.909 0.00 0.00 0.00 2.71
344 345 4.081972 ACTTGCTTATGTCTCAGTCGATGT 60.082 41.667 0.00 0.00 0.00 3.06
345 346 4.428209 ACTTGCTTATGTCTCAGTCGATG 58.572 43.478 0.00 0.00 0.00 3.84
346 347 4.400884 AGACTTGCTTATGTCTCAGTCGAT 59.599 41.667 0.00 0.00 39.04 3.59
347 348 3.759086 AGACTTGCTTATGTCTCAGTCGA 59.241 43.478 0.00 0.00 39.04 4.20
348 349 4.103365 AGACTTGCTTATGTCTCAGTCG 57.897 45.455 0.00 0.00 39.04 4.18
349 350 6.626302 ACTAAGACTTGCTTATGTCTCAGTC 58.374 40.000 0.00 0.00 37.24 3.51
350 351 6.597832 ACTAAGACTTGCTTATGTCTCAGT 57.402 37.500 0.00 0.00 42.02 3.41
351 352 5.741510 CGACTAAGACTTGCTTATGTCTCAG 59.258 44.000 0.00 0.00 42.02 3.35
352 353 5.414765 TCGACTAAGACTTGCTTATGTCTCA 59.585 40.000 0.00 0.00 42.02 3.27
353 354 5.740099 GTCGACTAAGACTTGCTTATGTCTC 59.260 44.000 8.70 0.00 42.02 3.36
354 355 5.642686 GTCGACTAAGACTTGCTTATGTCT 58.357 41.667 8.70 0.00 44.40 3.41
355 356 5.935448 GTCGACTAAGACTTGCTTATGTC 57.065 43.478 8.70 0.00 38.36 3.06
366 367 5.881447 TGCTAAATCTCAGTCGACTAAGAC 58.119 41.667 20.77 8.32 41.23 3.01
367 368 6.072119 TGTTGCTAAATCTCAGTCGACTAAGA 60.072 38.462 20.63 20.63 0.00 2.10
368 369 6.034044 GTGTTGCTAAATCTCAGTCGACTAAG 59.966 42.308 19.57 14.47 0.00 2.18
369 370 5.862323 GTGTTGCTAAATCTCAGTCGACTAA 59.138 40.000 19.57 1.94 0.00 2.24
370 371 5.183331 AGTGTTGCTAAATCTCAGTCGACTA 59.817 40.000 19.57 2.81 0.00 2.59
371 372 4.021894 AGTGTTGCTAAATCTCAGTCGACT 60.022 41.667 13.58 13.58 0.00 4.18
372 373 4.238514 AGTGTTGCTAAATCTCAGTCGAC 58.761 43.478 7.70 7.70 0.00 4.20
373 374 4.521130 AGTGTTGCTAAATCTCAGTCGA 57.479 40.909 0.00 0.00 0.00 4.20
374 375 7.702772 ACTTATAGTGTTGCTAAATCTCAGTCG 59.297 37.037 0.00 0.00 32.72 4.18
375 376 8.934507 ACTTATAGTGTTGCTAAATCTCAGTC 57.065 34.615 0.00 0.00 32.72 3.51
376 377 8.531982 TGACTTATAGTGTTGCTAAATCTCAGT 58.468 33.333 0.00 0.00 32.72 3.41
377 378 8.932945 TGACTTATAGTGTTGCTAAATCTCAG 57.067 34.615 0.00 0.00 32.72 3.35
378 379 9.719355 TTTGACTTATAGTGTTGCTAAATCTCA 57.281 29.630 0.00 0.00 32.72 3.27
379 380 9.974750 GTTTGACTTATAGTGTTGCTAAATCTC 57.025 33.333 0.00 0.00 32.72 2.75
380 381 9.726438 AGTTTGACTTATAGTGTTGCTAAATCT 57.274 29.630 0.00 0.00 32.72 2.40
550 554 8.691661 TTAGCTTTGTCCTAAATCAAACTTCT 57.308 30.769 0.00 0.00 31.59 2.85
562 566 6.808321 ACTCCACATATTAGCTTTGTCCTA 57.192 37.500 0.00 0.00 0.00 2.94
578 582 6.775629 ACTCCTTTGCTTTTATTTACTCCACA 59.224 34.615 0.00 0.00 0.00 4.17
580 584 8.927675 TTACTCCTTTGCTTTTATTTACTCCA 57.072 30.769 0.00 0.00 0.00 3.86
594 598 3.128764 CGGAATCCCTTTTACTCCTTTGC 59.871 47.826 0.00 0.00 0.00 3.68
608 612 7.562454 TGTTCATATTTTTACTCGGAATCCC 57.438 36.000 0.00 0.00 0.00 3.85
609 613 7.638683 CGTTGTTCATATTTTTACTCGGAATCC 59.361 37.037 0.00 0.00 0.00 3.01
610 614 8.385111 TCGTTGTTCATATTTTTACTCGGAATC 58.615 33.333 0.00 0.00 0.00 2.52
611 615 8.259049 TCGTTGTTCATATTTTTACTCGGAAT 57.741 30.769 0.00 0.00 0.00 3.01
612 616 7.655236 TCGTTGTTCATATTTTTACTCGGAA 57.345 32.000 0.00 0.00 0.00 4.30
613 617 7.837202 ATCGTTGTTCATATTTTTACTCGGA 57.163 32.000 0.00 0.00 0.00 4.55
614 618 8.889849 AAATCGTTGTTCATATTTTTACTCGG 57.110 30.769 0.00 0.00 0.00 4.63
620 624 9.020731 ACCTCCTAAATCGTTGTTCATATTTTT 57.979 29.630 0.00 0.00 0.00 1.94
621 625 8.575649 ACCTCCTAAATCGTTGTTCATATTTT 57.424 30.769 0.00 0.00 0.00 1.82
622 626 7.011109 CGACCTCCTAAATCGTTGTTCATATTT 59.989 37.037 0.00 0.00 0.00 1.40
623 627 6.479001 CGACCTCCTAAATCGTTGTTCATATT 59.521 38.462 0.00 0.00 0.00 1.28
632 636 5.068198 TGCTTATACGACCTCCTAAATCGTT 59.932 40.000 3.65 0.00 46.38 3.85
637 641 7.592885 AGTATTGCTTATACGACCTCCTAAA 57.407 36.000 0.00 0.00 43.25 1.85
638 642 7.431249 CAAGTATTGCTTATACGACCTCCTAA 58.569 38.462 0.00 0.00 43.25 2.69
657 661 2.125269 GTCCGCCGGTGCAAGTAT 60.125 61.111 10.27 0.00 37.32 2.12
658 662 3.583276 CTGTCCGCCGGTGCAAGTA 62.583 63.158 10.27 0.00 37.32 2.24
659 663 4.988598 CTGTCCGCCGGTGCAAGT 62.989 66.667 10.27 0.00 37.32 3.16
660 664 4.988598 ACTGTCCGCCGGTGCAAG 62.989 66.667 10.27 8.82 37.32 4.01
683 697 1.084370 CCAAACGATGAGACCGAGGC 61.084 60.000 0.00 0.00 0.00 4.70
709 723 2.024825 GCCGAGGTGACATCTCTAGGT 61.025 57.143 13.77 0.00 0.00 3.08
791 805 2.459060 TTTTCGTTCCATAGTGCCGA 57.541 45.000 0.00 0.00 0.00 5.54
868 882 5.451242 GCTTATGTATTTCGGGCATTCCAAA 60.451 40.000 0.00 0.00 34.36 3.28
982 996 4.497507 CCTCATTGTAATCTGCGACGAGTA 60.498 45.833 0.00 0.00 0.00 2.59
985 999 2.425668 TCCTCATTGTAATCTGCGACGA 59.574 45.455 0.00 0.00 0.00 4.20
999 1013 5.975988 AGTACATGGTATGGTTCCTCATT 57.024 39.130 0.00 0.00 33.60 2.57
1105 1119 0.941463 CTCGATTCGATGAAGGCCCG 60.941 60.000 9.54 0.00 34.61 6.13
1290 1304 1.028330 CGTAGCCGGAGTACTGGTCA 61.028 60.000 5.05 0.00 43.99 4.02
1704 1822 2.992476 GGAACCTCTCCAGCCAGTA 58.008 57.895 0.00 0.00 44.67 2.74
1883 2010 0.743688 ATGTCAGATCGAAGCTCGCT 59.256 50.000 0.00 0.00 40.21 4.93
1892 2019 6.018425 CAGAAATGAACCCTTATGTCAGATCG 60.018 42.308 0.00 0.00 0.00 3.69
2276 2839 1.271379 CGTAGCCTGGTAACTGTCACA 59.729 52.381 0.00 0.00 37.61 3.58
2278 2841 1.913778 TCGTAGCCTGGTAACTGTCA 58.086 50.000 0.00 0.00 37.61 3.58
2456 3048 6.870965 TGCAAGTTACTGTGAACAAAACAAAT 59.129 30.769 9.66 0.00 0.00 2.32
2459 3051 5.048364 AGTGCAAGTTACTGTGAACAAAACA 60.048 36.000 0.00 0.00 0.00 2.83
2463 3055 3.376859 CCAGTGCAAGTTACTGTGAACAA 59.623 43.478 5.32 0.00 43.05 2.83
2565 3260 3.746492 GTGTCTCGAAGGTACTGCAAATT 59.254 43.478 0.00 0.00 40.86 1.82
2716 3516 1.104577 ATGGACGCCACGGTTTTGTT 61.105 50.000 0.50 0.00 35.80 2.83
2772 3574 5.422012 AGATTAAGGGTTATTGCAGGGTTTG 59.578 40.000 0.00 0.00 0.00 2.93
2994 3837 0.321564 TATATGCTCATGGGCGCCAC 60.322 55.000 30.85 18.39 35.80 5.01
3161 4013 1.544759 CCTAACGGCCTTTGGACAACT 60.545 52.381 6.93 0.00 0.00 3.16
3272 4131 3.152341 CAGACAGATGGGCTTGAACTTT 58.848 45.455 0.00 0.00 0.00 2.66
3280 4139 2.240667 ACATTAAGCAGACAGATGGGCT 59.759 45.455 0.00 0.00 38.45 5.19
3324 4183 7.432148 TCAGACCTAACATATTGGCTAGAAA 57.568 36.000 0.00 0.00 0.00 2.52
3491 7557 6.208599 CCAAGTATCACCAAAGCCTTTTTCTA 59.791 38.462 0.00 0.00 0.00 2.10
3539 7638 3.000727 ACGGAAAATAAAGTGCCTCTCG 58.999 45.455 0.00 0.00 0.00 4.04
3578 8518 8.575589 GGAAGGGATTTTTGCAACAAAATAAAT 58.424 29.630 8.68 6.65 0.00 1.40
3579 8519 7.557719 TGGAAGGGATTTTTGCAACAAAATAAA 59.442 29.630 8.68 2.17 0.00 1.40
3582 8522 5.444176 TGGAAGGGATTTTTGCAACAAAAT 58.556 33.333 8.49 8.49 0.00 1.82
3583 8523 4.848357 TGGAAGGGATTTTTGCAACAAAA 58.152 34.783 0.00 0.00 0.00 2.44
3584 8524 4.494091 TGGAAGGGATTTTTGCAACAAA 57.506 36.364 0.00 3.95 0.00 2.83
3585 8525 4.494091 TTGGAAGGGATTTTTGCAACAA 57.506 36.364 0.00 0.00 32.08 2.83
3664 8604 3.732048 TTCTTGACCCCTAATGAACCC 57.268 47.619 0.00 0.00 0.00 4.11
3665 8605 4.663334 ACTTTCTTGACCCCTAATGAACC 58.337 43.478 0.00 0.00 0.00 3.62
3675 8615 6.817140 CCACAACTACTATACTTTCTTGACCC 59.183 42.308 0.00 0.00 0.00 4.46
3677 8617 7.331193 CACCCACAACTACTATACTTTCTTGAC 59.669 40.741 0.00 0.00 0.00 3.18
3686 8626 3.118738 AGCTGCACCCACAACTACTATAC 60.119 47.826 1.02 0.00 0.00 1.47
3694 8634 1.066257 CAACAGCTGCACCCACAAC 59.934 57.895 15.27 0.00 0.00 3.32
3705 8645 5.016051 ACTACGATCATTGATCAACAGCT 57.984 39.130 22.95 0.00 38.84 4.24
3707 8647 6.892310 TGAACTACGATCATTGATCAACAG 57.108 37.500 22.95 17.73 38.84 3.16
3713 8653 8.424918 AGGAGTATTTGAACTACGATCATTGAT 58.575 33.333 0.00 0.00 35.30 2.57
3717 8657 8.353684 CAGTAGGAGTATTTGAACTACGATCAT 58.646 37.037 0.00 0.00 39.10 2.45
3722 8662 9.286946 CTAAACAGTAGGAGTATTTGAACTACG 57.713 37.037 0.00 0.00 39.10 3.51
3750 8690 9.681062 CCCTTAAGTGAATGACCTTAAGATTTA 57.319 33.333 16.67 0.00 46.79 1.40
3753 8693 7.510675 TCCCTTAAGTGAATGACCTTAAGAT 57.489 36.000 16.67 0.00 46.79 2.40
3754 8694 6.945636 TCCCTTAAGTGAATGACCTTAAGA 57.054 37.500 16.67 0.76 46.79 2.10
3761 8701 6.366061 GCAACAATTTCCCTTAAGTGAATGAC 59.634 38.462 7.90 0.00 0.00 3.06
3766 8706 5.221422 CCAAGCAACAATTTCCCTTAAGTGA 60.221 40.000 0.97 0.00 0.00 3.41
3773 8713 1.422531 TGCCAAGCAACAATTTCCCT 58.577 45.000 0.00 0.00 34.76 4.20
3807 8747 7.309744 CCACAAATAATTGTCTAAAAGGCTCCA 60.310 37.037 0.00 0.00 46.78 3.86
3808 8748 7.035612 CCACAAATAATTGTCTAAAAGGCTCC 58.964 38.462 0.00 0.00 46.78 4.70
3823 8763 9.296400 GCACGTGTAAATATTTCCACAAATAAT 57.704 29.630 19.96 0.40 37.87 1.28
3826 8766 6.919721 AGCACGTGTAAATATTTCCACAAAT 58.080 32.000 19.96 5.84 36.18 2.32
3846 8786 5.649557 TGCAATACCAATTTGATGTAGCAC 58.350 37.500 0.00 0.00 0.00 4.40
3891 8832 5.486735 TCATGGTCCCTTTTCTTACGTAA 57.513 39.130 7.94 7.94 0.00 3.18
3894 8835 3.689649 CCTTCATGGTCCCTTTTCTTACG 59.310 47.826 0.00 0.00 0.00 3.18
3932 8873 5.530915 CCTTGACATTTGGACTACAACTTGA 59.469 40.000 0.00 0.00 39.19 3.02
3950 8891 4.545823 TTGTTCGTCATTTGACCTTGAC 57.454 40.909 5.17 0.00 41.86 3.18
3956 8897 7.269084 CACATCATAGTTTGTTCGTCATTTGAC 59.731 37.037 0.46 0.46 41.47 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.