Multiple sequence alignment - TraesCS5D01G250400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G250400 chr5D 100.000 3965 0 0 1 3965 356839681 356835717 0.000000e+00 7323.0
1 TraesCS5D01G250400 chr5D 76.075 1279 201 55 1289 2505 356800619 356799384 1.600000e-158 569.0
2 TraesCS5D01G250400 chr5D 83.613 476 66 10 717 1188 357017167 357016700 1.690000e-118 436.0
3 TraesCS5D01G250400 chr5D 88.854 323 34 2 860 1181 356911505 356911184 2.870000e-106 396.0
4 TraesCS5D01G250400 chr5D 82.730 359 45 13 2621 2970 356909662 356909312 1.790000e-78 303.0
5 TraesCS5D01G250400 chr5D 81.768 362 47 12 2620 2968 357015087 357014732 6.490000e-73 285.0
6 TraesCS5D01G250400 chr5D 82.581 155 19 7 2023 2173 356688295 356688145 3.220000e-26 130.0
7 TraesCS5D01G250400 chr5A 90.449 3162 175 55 231 3304 458193756 458190634 0.000000e+00 4048.0
8 TraesCS5D01G250400 chr5A 89.852 2700 147 47 494 3142 456068251 456070874 0.000000e+00 3350.0
9 TraesCS5D01G250400 chr5A 78.864 1074 145 49 1289 2330 458177977 458176954 0.000000e+00 651.0
10 TraesCS5D01G250400 chr5A 77.315 1080 161 50 1289 2339 456088222 456089246 9.620000e-156 560.0
11 TraesCS5D01G250400 chr5A 81.475 583 77 21 612 1188 458279464 458278907 2.170000e-122 449.0
12 TraesCS5D01G250400 chr5A 82.913 515 59 19 1289 1778 458278837 458278327 1.690000e-118 436.0
13 TraesCS5D01G250400 chr5A 89.697 330 30 4 860 1187 458273980 458273653 6.130000e-113 418.0
14 TraesCS5D01G250400 chr5A 85.213 399 51 7 788 1181 458179303 458178908 1.720000e-108 403.0
15 TraesCS5D01G250400 chr5A 89.032 310 24 6 190 497 456066223 456066524 3.740000e-100 375.0
16 TraesCS5D01G250400 chr5A 82.778 360 45 12 2620 2970 458225809 458225458 4.980000e-79 305.0
17 TraesCS5D01G250400 chr5A 81.351 370 52 13 2620 2976 458277311 458276946 6.490000e-73 285.0
18 TraesCS5D01G250400 chr5A 88.119 202 11 4 3171 3366 456072036 456072230 1.110000e-55 228.0
19 TraesCS5D01G250400 chr5A 78.378 333 48 10 2639 2950 458232980 458232651 1.120000e-45 195.0
20 TraesCS5D01G250400 chr5B 90.512 2150 138 36 1460 3577 421621330 421619215 0.000000e+00 2780.0
21 TraesCS5D01G250400 chr5B 90.977 1197 82 14 6 1196 421622953 421621777 0.000000e+00 1589.0
22 TraesCS5D01G250400 chr5B 82.565 499 66 16 699 1188 421718166 421717680 1.700000e-113 420.0
23 TraesCS5D01G250400 chr5B 82.081 519 64 12 1289 1778 421612651 421612133 2.200000e-112 416.0
24 TraesCS5D01G250400 chr5B 82.136 515 63 21 1289 1778 421717607 421717097 7.930000e-112 414.0
25 TraesCS5D01G250400 chr5B 78.326 466 63 19 1870 2330 421612011 421611579 2.350000e-67 267.0
26 TraesCS5D01G250400 chr5B 80.495 364 52 10 2620 2968 421716208 421715849 1.090000e-65 261.0
27 TraesCS5D01G250400 chr5B 81.507 292 43 4 2226 2507 421716575 421716285 3.080000e-56 230.0
28 TraesCS5D01G250400 chr5B 90.000 170 9 3 1256 1425 421621759 421621598 3.100000e-51 213.0
29 TraesCS5D01G250400 chr6D 96.000 50 2 0 1 50 399218058 399218107 9.130000e-12 82.4
30 TraesCS5D01G250400 chr6D 95.918 49 1 1 1 49 342464510 342464557 1.180000e-10 78.7
31 TraesCS5D01G250400 chr7B 93.750 48 3 0 3 50 327458934 327458981 5.500000e-09 73.1
32 TraesCS5D01G250400 chr3B 93.750 48 3 0 3 50 215022613 215022660 5.500000e-09 73.1
33 TraesCS5D01G250400 chr3B 95.349 43 2 0 3 45 819380392 819380350 7.110000e-08 69.4
34 TraesCS5D01G250400 chr7D 93.333 45 3 0 3 47 634043483 634043527 2.560000e-07 67.6
35 TraesCS5D01G250400 chr2A 91.667 48 2 2 4 50 200185791 200185745 9.200000e-07 65.8
36 TraesCS5D01G250400 chr2D 84.286 70 6 3 3 71 115938463 115938528 3.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G250400 chr5D 356835717 356839681 3964 True 7323.000000 7323 100.000000 1 3965 1 chr5D.!!$R3 3964
1 TraesCS5D01G250400 chr5D 356799384 356800619 1235 True 569.000000 569 76.075000 1289 2505 1 chr5D.!!$R2 1216
2 TraesCS5D01G250400 chr5D 357014732 357017167 2435 True 360.500000 436 82.690500 717 2968 2 chr5D.!!$R5 2251
3 TraesCS5D01G250400 chr5D 356909312 356911505 2193 True 349.500000 396 85.792000 860 2970 2 chr5D.!!$R4 2110
4 TraesCS5D01G250400 chr5A 458190634 458193756 3122 True 4048.000000 4048 90.449000 231 3304 1 chr5A.!!$R1 3073
5 TraesCS5D01G250400 chr5A 456066223 456072230 6007 False 1317.666667 3350 89.001000 190 3366 3 chr5A.!!$F2 3176
6 TraesCS5D01G250400 chr5A 456088222 456089246 1024 False 560.000000 560 77.315000 1289 2339 1 chr5A.!!$F1 1050
7 TraesCS5D01G250400 chr5A 458176954 458179303 2349 True 527.000000 651 82.038500 788 2330 2 chr5A.!!$R4 1542
8 TraesCS5D01G250400 chr5A 458273653 458279464 5811 True 397.000000 449 83.859000 612 2976 4 chr5A.!!$R5 2364
9 TraesCS5D01G250400 chr5B 421619215 421622953 3738 True 1527.333333 2780 90.496333 6 3577 3 chr5B.!!$R2 3571
10 TraesCS5D01G250400 chr5B 421611579 421612651 1072 True 341.500000 416 80.203500 1289 2330 2 chr5B.!!$R1 1041
11 TraesCS5D01G250400 chr5B 421715849 421718166 2317 True 331.250000 420 81.675750 699 2968 4 chr5B.!!$R3 2269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 471 1.134670 GTCGCTCTCAATACCTTGGCT 60.135 52.381 0.0 0.0 32.95 4.75 F
1645 4623 0.034896 GGCTCGACAGGTTTCCAGAA 59.965 55.000 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 4937 0.548510 CCCCTGGATGTTCCTCTTCC 59.451 60.0 0.00 0.00 37.46 3.46 R
3482 7968 0.328258 GTGGCCAGATTACCAGTGGT 59.672 55.0 20.91 20.91 36.38 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.387041 ACTGCCATGATGTTTGATGAATAG 57.613 37.500 0.00 0.00 0.00 1.73
45 46 7.287005 ACTGCCATGATGTTTGATGAATAGATT 59.713 33.333 0.00 0.00 0.00 2.40
101 102 6.811665 TGACGCATAATAGCAGTATTGGATAC 59.188 38.462 0.00 0.00 35.99 2.24
124 125 6.443792 ACGAAAGACGATTAAAGGCATTTTT 58.556 32.000 0.00 0.00 45.77 1.94
179 180 5.767816 TTCTTTCTTTTAGGGACACTTGC 57.232 39.130 0.00 0.00 0.00 4.01
188 189 3.340814 AGGGACACTTGCTAGTTGATG 57.659 47.619 0.00 0.00 30.26 3.07
229 230 2.635714 TGTATTCTGCTGCATGACCAG 58.364 47.619 1.31 0.00 35.93 4.00
250 251 1.531149 CTTCCACTTGGCACTTGTACG 59.469 52.381 0.00 0.00 34.44 3.67
278 279 3.423848 GGAAATTTCCTTGCCAGCG 57.576 52.632 26.94 0.00 44.11 5.18
297 299 1.136363 CGTACATGTCACCAAAGCACG 60.136 52.381 0.00 0.00 0.00 5.34
311 313 3.784412 CACGTAAACCTGGGCGCG 61.784 66.667 0.00 0.00 0.00 6.86
319 321 2.356313 CCTGGGCGCGCATAGTAG 60.356 66.667 34.42 20.67 0.00 2.57
320 322 2.728180 CTGGGCGCGCATAGTAGA 59.272 61.111 34.42 2.61 0.00 2.59
321 323 1.661821 CTGGGCGCGCATAGTAGAC 60.662 63.158 34.42 12.59 0.00 2.59
322 324 2.729862 GGGCGCGCATAGTAGACG 60.730 66.667 34.42 0.00 0.00 4.18
463 471 1.134670 GTCGCTCTCAATACCTTGGCT 60.135 52.381 0.00 0.00 32.95 4.75
474 482 1.636148 ACCTTGGCTTGCATGTCAAT 58.364 45.000 18.63 3.86 33.57 2.57
480 488 2.629137 TGGCTTGCATGTCAATTCAACT 59.371 40.909 4.13 0.00 33.57 3.16
816 2575 4.323104 GGAGCCTCTCATTGTACTTCTTGT 60.323 45.833 0.00 0.00 31.08 3.16
822 2581 5.794894 TCTCATTGTACTTCTTGTTCCTCC 58.205 41.667 0.00 0.00 0.00 4.30
825 2584 6.601332 TCATTGTACTTCTTGTTCCTCCTTT 58.399 36.000 0.00 0.00 0.00 3.11
1141 2900 3.991536 GAGTCGCCTTCCGGTGCTC 62.992 68.421 0.00 0.00 40.70 4.26
1197 2983 2.593346 AGAGCGATCACTGAACATCC 57.407 50.000 2.38 0.00 0.00 3.51
1219 3838 0.758310 TGTTGGAACCTGCATGGCAA 60.758 50.000 0.00 0.00 38.41 4.52
1276 3899 0.952497 ACTGTTGGCTGATCACGCTG 60.952 55.000 14.20 0.00 0.00 5.18
1414 4037 2.331194 CCTGGAACAACGGTAAGTACG 58.669 52.381 0.00 0.00 38.70 3.67
1416 4039 3.057596 CCTGGAACAACGGTAAGTACGTA 60.058 47.826 0.00 0.00 44.83 3.57
1417 4040 3.896122 TGGAACAACGGTAAGTACGTAC 58.104 45.455 18.10 18.10 44.83 3.67
1558 4536 3.587797 GGGTTCTCATACTCGAACACA 57.412 47.619 0.00 0.00 41.85 3.72
1633 4611 0.036388 TCCTGGTGAAATGGCTCGAC 60.036 55.000 0.00 0.00 0.00 4.20
1639 4617 1.880027 GTGAAATGGCTCGACAGGTTT 59.120 47.619 0.00 0.00 0.00 3.27
1642 4620 0.400213 AATGGCTCGACAGGTTTCCA 59.600 50.000 0.00 0.00 0.00 3.53
1645 4623 0.034896 GGCTCGACAGGTTTCCAGAA 59.965 55.000 0.00 0.00 0.00 3.02
1699 4677 3.055080 CTTCGCCGGCCACTACGTA 62.055 63.158 23.46 0.00 0.00 3.57
1780 4758 1.207089 CTTCAGGGCATCTTGGTACGA 59.793 52.381 0.00 0.00 0.00 3.43
1783 4761 1.134401 CAGGGCATCTTGGTACGACAT 60.134 52.381 0.00 0.00 0.00 3.06
1786 4764 4.021456 CAGGGCATCTTGGTACGACATATA 60.021 45.833 0.00 0.00 0.00 0.86
1787 4765 4.021368 AGGGCATCTTGGTACGACATATAC 60.021 45.833 0.00 0.00 0.00 1.47
1788 4766 3.918591 GGCATCTTGGTACGACATATACG 59.081 47.826 0.00 0.00 0.00 3.06
1942 4985 2.819984 TTCTTCTGGACCCATGCCGC 62.820 60.000 0.00 0.00 0.00 6.53
1952 4995 1.153568 CCATGCCGCGATATCCGAT 60.154 57.895 8.23 0.45 41.76 4.18
2286 5418 2.824041 AATGATCCGGCGGTGCAC 60.824 61.111 27.32 8.80 0.00 4.57
2360 5492 3.376859 TCAACTTGCGGCTAATATGTTGG 59.623 43.478 0.00 0.00 35.46 3.77
2579 5835 8.922676 ACCTTTTGCGTTATTCATCTATATACG 58.077 33.333 0.00 0.00 0.00 3.06
2614 5870 3.499563 CCACCCAATGAACTTCCCTACAA 60.500 47.826 0.00 0.00 0.00 2.41
2626 5882 4.844655 ACTTCCCTACAATCTACAGTGGTT 59.155 41.667 0.00 0.00 0.00 3.67
2763 6023 4.935808 ACCGGAAACATTACTCATCTGAAC 59.064 41.667 9.46 0.00 0.00 3.18
2796 6071 0.179179 GAAACTGATGGCTTCGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
2823 6098 1.153086 GCAGGTGGGAGGCTATGTG 60.153 63.158 0.00 0.00 0.00 3.21
2864 6139 2.414994 ACGTTCCTATCCGTGAGAGA 57.585 50.000 0.00 0.00 35.69 3.10
2952 6227 0.462047 GGATGCTCCCACCTTACACG 60.462 60.000 0.00 0.00 0.00 4.49
2985 6260 6.032094 GTGAGTCATATGCCAAGACAAATTG 58.968 40.000 0.00 0.00 34.80 2.32
3170 6519 6.680131 TCAAATAATGAAAACGGCTATGGCTG 60.680 38.462 8.56 8.56 41.95 4.85
3181 7658 2.555199 GCTATGGCTGACTGGTTACAG 58.445 52.381 0.00 0.00 41.98 2.74
3235 7712 5.441709 ACCGGTGTACCTTGTAAATTTTG 57.558 39.130 6.12 0.00 0.00 2.44
3252 7729 5.596836 ATTTTGGAGTTTGTGAAGAGCAA 57.403 34.783 0.00 0.00 0.00 3.91
3253 7730 4.637483 TTTGGAGTTTGTGAAGAGCAAG 57.363 40.909 0.00 0.00 0.00 4.01
3254 7731 3.558931 TGGAGTTTGTGAAGAGCAAGA 57.441 42.857 0.00 0.00 0.00 3.02
3255 7732 3.470709 TGGAGTTTGTGAAGAGCAAGAG 58.529 45.455 0.00 0.00 0.00 2.85
3256 7733 2.225255 GGAGTTTGTGAAGAGCAAGAGC 59.775 50.000 0.00 0.00 42.56 4.09
3258 7735 2.158696 AGTTTGTGAAGAGCAAGAGCCT 60.159 45.455 0.00 0.00 43.56 4.58
3349 7834 4.078639 AGATGGCTTATGTAGTCTTGGC 57.921 45.455 0.00 0.00 0.00 4.52
3367 7852 1.000955 GGCTGGACATACCCTCATACG 59.999 57.143 0.00 0.00 38.00 3.06
3370 7855 3.762288 GCTGGACATACCCTCATACGATA 59.238 47.826 0.00 0.00 38.00 2.92
3371 7856 4.380655 GCTGGACATACCCTCATACGATAC 60.381 50.000 0.00 0.00 38.00 2.24
3372 7857 4.994282 TGGACATACCCTCATACGATACT 58.006 43.478 0.00 0.00 38.00 2.12
3373 7858 6.130692 TGGACATACCCTCATACGATACTA 57.869 41.667 0.00 0.00 38.00 1.82
3415 7901 4.216472 TGATACGTGGCAATACAGCAAAAA 59.784 37.500 0.00 0.00 35.83 1.94
3428 7914 4.270008 ACAGCAAAAAGACCAACACTACT 58.730 39.130 0.00 0.00 0.00 2.57
3438 7924 3.467803 ACCAACACTACTGAGAAACTGC 58.532 45.455 0.00 0.00 0.00 4.40
3463 7949 1.466856 TGTGGAAGCTCATCAATGGC 58.533 50.000 0.00 0.00 0.00 4.40
3468 7954 2.874648 AAGCTCATCAATGGCGCGGA 62.875 55.000 8.83 0.00 32.54 5.54
3482 7968 0.813610 CGCGGAGGCATTTGTATCCA 60.814 55.000 0.00 0.00 39.92 3.41
3498 7984 0.618458 TCCACCACTGGTAATCTGGC 59.382 55.000 0.00 0.00 38.90 4.85
3505 7991 3.270877 CACTGGTAATCTGGCCACTAAC 58.729 50.000 0.00 0.00 0.00 2.34
3517 8003 4.388499 ACTAACCAGTGGCGGGCG 62.388 66.667 9.78 0.00 32.25 6.13
3528 8014 4.230002 GCGGGCGCATGTAGGGTA 62.230 66.667 10.83 0.00 41.49 3.69
3537 8023 3.787476 GCGCATGTAGGGTATTTTTCACG 60.787 47.826 0.30 0.00 0.00 4.35
3541 8027 5.675323 GCATGTAGGGTATTTTTCACGGTTC 60.675 44.000 0.00 0.00 0.00 3.62
3542 8028 5.231702 TGTAGGGTATTTTTCACGGTTCT 57.768 39.130 0.00 0.00 0.00 3.01
3543 8029 5.623169 TGTAGGGTATTTTTCACGGTTCTT 58.377 37.500 0.00 0.00 0.00 2.52
3547 8033 5.773176 AGGGTATTTTTCACGGTTCTTTCAT 59.227 36.000 0.00 0.00 0.00 2.57
3616 8102 9.340327 CAAATTCGTGAACTTTTTACAATTTCG 57.660 29.630 0.00 0.00 0.00 3.46
3617 8103 8.623310 AATTCGTGAACTTTTTACAATTTCGT 57.377 26.923 0.00 0.00 0.00 3.85
3618 8104 7.425915 TTCGTGAACTTTTTACAATTTCGTG 57.574 32.000 0.00 0.00 0.00 4.35
3619 8105 5.452944 TCGTGAACTTTTTACAATTTCGTGC 59.547 36.000 0.00 0.00 0.00 5.34
3620 8106 5.228220 CGTGAACTTTTTACAATTTCGTGCA 59.772 36.000 0.00 0.00 0.00 4.57
3621 8107 6.399626 GTGAACTTTTTACAATTTCGTGCAC 58.600 36.000 6.82 6.82 0.00 4.57
3622 8108 5.517054 TGAACTTTTTACAATTTCGTGCACC 59.483 36.000 12.15 0.00 0.00 5.01
3623 8109 5.257082 ACTTTTTACAATTTCGTGCACCT 57.743 34.783 12.15 0.00 0.00 4.00
3624 8110 5.656480 ACTTTTTACAATTTCGTGCACCTT 58.344 33.333 12.15 0.00 0.00 3.50
3625 8111 5.746721 ACTTTTTACAATTTCGTGCACCTTC 59.253 36.000 12.15 0.00 0.00 3.46
3631 8117 3.904136 ATTTCGTGCACCTTCTTTCAG 57.096 42.857 12.15 0.00 0.00 3.02
3632 8118 2.613026 TTCGTGCACCTTCTTTCAGA 57.387 45.000 12.15 0.00 0.00 3.27
3635 8121 3.067106 TCGTGCACCTTCTTTCAGATTC 58.933 45.455 12.15 0.00 0.00 2.52
3637 8123 3.250762 CGTGCACCTTCTTTCAGATTCAA 59.749 43.478 12.15 0.00 0.00 2.69
3639 8125 5.591099 GTGCACCTTCTTTCAGATTCAAAA 58.409 37.500 5.22 0.00 0.00 2.44
3644 8130 7.278646 GCACCTTCTTTCAGATTCAAAAAGTTT 59.721 33.333 9.34 0.00 32.94 2.66
3689 8175 9.936759 TTTATTTTCAAACCTGTGAACTTTTCT 57.063 25.926 0.00 0.00 37.24 2.52
3692 8178 9.936759 ATTTTCAAACCTGTGAACTTTTCTAAA 57.063 25.926 0.00 0.00 37.24 1.85
3693 8179 9.765795 TTTTCAAACCTGTGAACTTTTCTAAAA 57.234 25.926 0.00 0.00 37.24 1.52
3694 8180 9.765795 TTTCAAACCTGTGAACTTTTCTAAAAA 57.234 25.926 0.00 0.00 37.24 1.94
3696 8182 8.581578 TCAAACCTGTGAACTTTTCTAAAAAGT 58.418 29.630 11.09 11.09 41.82 2.66
3698 8184 9.772973 AAACCTGTGAACTTTTCTAAAAAGTTT 57.227 25.926 23.79 12.78 46.81 2.66
3699 8185 9.772973 AACCTGTGAACTTTTCTAAAAAGTTTT 57.227 25.926 23.79 14.26 46.81 2.43
3789 8275 6.836577 TTCCCAAATTCGTGATTGTTTTTC 57.163 33.333 0.00 0.00 0.00 2.29
3790 8276 5.907207 TCCCAAATTCGTGATTGTTTTTCA 58.093 33.333 0.00 0.00 0.00 2.69
3791 8277 6.520272 TCCCAAATTCGTGATTGTTTTTCAT 58.480 32.000 0.00 0.00 0.00 2.57
3794 8280 8.127954 CCCAAATTCGTGATTGTTTTTCATTTT 58.872 29.630 0.00 0.00 0.00 1.82
3795 8281 9.500864 CCAAATTCGTGATTGTTTTTCATTTTT 57.499 25.926 0.00 0.00 0.00 1.94
3797 8283 8.545749 AATTCGTGATTGTTTTTCATTTTTGC 57.454 26.923 0.00 0.00 0.00 3.68
3798 8284 5.722237 TCGTGATTGTTTTTCATTTTTGCG 58.278 33.333 0.00 0.00 0.00 4.85
3799 8285 5.516696 TCGTGATTGTTTTTCATTTTTGCGA 59.483 32.000 0.00 0.00 0.00 5.10
3800 8286 6.035005 TCGTGATTGTTTTTCATTTTTGCGAA 59.965 30.769 0.00 0.00 0.00 4.70
3801 8287 6.136846 CGTGATTGTTTTTCATTTTTGCGAAC 59.863 34.615 0.00 0.00 0.00 3.95
3803 8289 7.691877 GTGATTGTTTTTCATTTTTGCGAACTT 59.308 29.630 0.00 0.00 0.00 2.66
3804 8290 8.233190 TGATTGTTTTTCATTTTTGCGAACTTT 58.767 25.926 0.00 0.00 0.00 2.66
3805 8291 8.962857 ATTGTTTTTCATTTTTGCGAACTTTT 57.037 23.077 0.00 0.00 0.00 2.27
3806 8292 8.788409 TTGTTTTTCATTTTTGCGAACTTTTT 57.212 23.077 0.00 0.00 0.00 1.94
3807 8293 8.428459 TGTTTTTCATTTTTGCGAACTTTTTC 57.572 26.923 0.00 0.00 0.00 2.29
3808 8294 7.535599 TGTTTTTCATTTTTGCGAACTTTTTCC 59.464 29.630 0.00 0.00 0.00 3.13
3809 8295 6.727824 TTTCATTTTTGCGAACTTTTTCCA 57.272 29.167 0.00 0.00 0.00 3.53
3810 8296 6.727824 TTCATTTTTGCGAACTTTTTCCAA 57.272 29.167 0.00 0.00 0.00 3.53
3811 8297 6.727824 TCATTTTTGCGAACTTTTTCCAAA 57.272 29.167 0.00 0.00 33.60 3.28
3812 8298 7.313951 TCATTTTTGCGAACTTTTTCCAAAT 57.686 28.000 0.00 0.00 34.56 2.32
3813 8299 7.756558 TCATTTTTGCGAACTTTTTCCAAATT 58.243 26.923 0.00 0.00 34.56 1.82
3815 8301 9.662545 CATTTTTGCGAACTTTTTCCAAATTAT 57.337 25.926 0.00 0.00 34.56 1.28
3816 8302 9.662545 ATTTTTGCGAACTTTTTCCAAATTATG 57.337 25.926 0.00 0.00 34.56 1.90
3818 8304 8.425577 TTTGCGAACTTTTTCCAAATTATGAA 57.574 26.923 0.00 0.00 31.97 2.57
3819 8305 7.401484 TGCGAACTTTTTCCAAATTATGAAC 57.599 32.000 0.00 0.00 0.00 3.18
3820 8306 7.206687 TGCGAACTTTTTCCAAATTATGAACT 58.793 30.769 0.00 0.00 0.00 3.01
3821 8307 7.708752 TGCGAACTTTTTCCAAATTATGAACTT 59.291 29.630 0.00 0.00 0.00 2.66
3853 8339 9.596677 AAATTTGCAAAAATATGAAATGTCGTG 57.403 25.926 17.19 0.00 0.00 4.35
3855 8341 7.936950 TTGCAAAAATATGAAATGTCGTGAA 57.063 28.000 0.00 0.00 0.00 3.18
3856 8342 7.332003 TGCAAAAATATGAAATGTCGTGAAC 57.668 32.000 0.00 0.00 0.00 3.18
3857 8343 6.087423 TGCAAAAATATGAAATGTCGTGAACG 59.913 34.615 0.00 0.00 41.45 3.95
3858 8344 6.087555 GCAAAAATATGAAATGTCGTGAACGT 59.912 34.615 2.37 0.00 40.80 3.99
3859 8345 7.358023 GCAAAAATATGAAATGTCGTGAACGTT 60.358 33.333 0.00 0.00 38.80 3.99
3861 8347 8.568732 AAAATATGAAATGTCGTGAACGTTTT 57.431 26.923 0.46 2.48 45.11 2.43
3862 8348 8.568732 AAATATGAAATGTCGTGAACGTTTTT 57.431 26.923 0.46 0.00 45.11 1.94
3938 9955 8.614469 TTTTCCATTTTTGAAAAGTCAACAGT 57.386 26.923 0.00 0.00 43.52 3.55
3939 9956 7.826260 TTCCATTTTTGAAAAGTCAACAGTC 57.174 32.000 0.00 0.00 43.52 3.51
3940 9957 6.929625 TCCATTTTTGAAAAGTCAACAGTCA 58.070 32.000 0.00 0.00 43.52 3.41
3941 9958 7.382110 TCCATTTTTGAAAAGTCAACAGTCAA 58.618 30.769 0.00 0.00 43.52 3.18
3942 9959 7.330700 TCCATTTTTGAAAAGTCAACAGTCAAC 59.669 33.333 0.00 0.00 43.52 3.18
3944 9961 7.867445 TTTTTGAAAAGTCAACAGTCAACTC 57.133 32.000 0.00 0.00 43.52 3.01
3946 9963 6.422776 TTGAAAAGTCAACAGTCAACTCTC 57.577 37.500 0.00 0.00 38.88 3.20
3947 9964 4.876107 TGAAAAGTCAACAGTCAACTCTCC 59.124 41.667 0.00 0.00 0.00 3.71
3948 9965 4.487714 AAAGTCAACAGTCAACTCTCCA 57.512 40.909 0.00 0.00 0.00 3.86
3949 9966 4.696479 AAGTCAACAGTCAACTCTCCAT 57.304 40.909 0.00 0.00 0.00 3.41
3950 9967 4.000331 AGTCAACAGTCAACTCTCCATG 58.000 45.455 0.00 0.00 0.00 3.66
3951 9968 3.070018 GTCAACAGTCAACTCTCCATGG 58.930 50.000 4.97 4.97 0.00 3.66
3952 9969 2.705658 TCAACAGTCAACTCTCCATGGT 59.294 45.455 12.58 0.00 0.00 3.55
3953 9970 3.070018 CAACAGTCAACTCTCCATGGTC 58.930 50.000 12.58 0.00 0.00 4.02
3954 9971 2.329267 ACAGTCAACTCTCCATGGTCA 58.671 47.619 12.58 0.00 0.00 4.02
3955 9972 2.705658 ACAGTCAACTCTCCATGGTCAA 59.294 45.455 12.58 0.00 0.00 3.18
3957 9974 2.069273 GTCAACTCTCCATGGTCAACG 58.931 52.381 12.58 0.00 0.00 4.10
3960 9977 3.007940 TCAACTCTCCATGGTCAACGATT 59.992 43.478 12.58 0.00 0.00 3.34
3962 9979 1.667724 CTCTCCATGGTCAACGATTGC 59.332 52.381 12.58 0.00 0.00 3.56
3963 9980 1.003003 TCTCCATGGTCAACGATTGCA 59.997 47.619 12.58 0.00 0.00 4.08
3964 9981 1.399440 CTCCATGGTCAACGATTGCAG 59.601 52.381 12.58 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.181245 TGGCAGTATAAAGAACACAAGAAGC 59.819 40.000 0.00 0.00 0.00 3.86
3 4 6.939730 TCATGGCAGTATAAAGAACACAAGAA 59.060 34.615 0.00 0.00 0.00 2.52
4 5 6.472016 TCATGGCAGTATAAAGAACACAAGA 58.528 36.000 0.00 0.00 0.00 3.02
8 9 6.683974 ACATCATGGCAGTATAAAGAACAC 57.316 37.500 0.00 0.00 0.00 3.32
21 22 7.285858 TCAATCTATTCATCAAACATCATGGCA 59.714 33.333 0.00 0.00 0.00 4.92
71 72 4.214980 ACTGCTATTATGCGTCAATTGC 57.785 40.909 0.00 0.00 35.54 3.56
81 82 9.639601 TCTTTCGTATCCAATACTGCTATTATG 57.360 33.333 0.00 0.00 33.59 1.90
83 84 7.806487 CGTCTTTCGTATCCAATACTGCTATTA 59.194 37.037 0.00 0.00 33.59 0.98
101 102 6.183359 CCAAAAATGCCTTTAATCGTCTTTCG 60.183 38.462 0.00 0.00 41.41 3.46
157 158 5.445964 AGCAAGTGTCCCTAAAAGAAAGAA 58.554 37.500 0.00 0.00 0.00 2.52
159 160 5.998363 ACTAGCAAGTGTCCCTAAAAGAAAG 59.002 40.000 0.00 0.00 33.57 2.62
167 168 4.093743 TCATCAACTAGCAAGTGTCCCTA 58.906 43.478 0.00 0.00 35.62 3.53
168 169 2.906389 TCATCAACTAGCAAGTGTCCCT 59.094 45.455 0.00 0.00 35.62 4.20
171 172 5.931441 AGTTTCATCAACTAGCAAGTGTC 57.069 39.130 0.00 0.00 44.56 3.67
172 173 5.822519 TGAAGTTTCATCAACTAGCAAGTGT 59.177 36.000 0.00 0.00 45.77 3.55
173 174 6.304356 TGAAGTTTCATCAACTAGCAAGTG 57.696 37.500 0.00 0.00 45.77 3.16
174 175 6.712095 TCATGAAGTTTCATCAACTAGCAAGT 59.288 34.615 4.43 0.00 45.77 3.16
177 178 7.509141 TTTCATGAAGTTTCATCAACTAGCA 57.491 32.000 8.41 0.00 45.77 3.49
178 179 8.976986 AATTTCATGAAGTTTCATCAACTAGC 57.023 30.769 10.17 0.00 45.77 3.42
179 180 9.565213 GGAATTTCATGAAGTTTCATCAACTAG 57.435 33.333 23.61 0.00 45.77 2.57
188 189 9.573133 AATACATTCGGAATTTCATGAAGTTTC 57.427 29.630 16.30 17.38 0.00 2.78
205 206 3.303593 GGTCATGCAGCAGAATACATTCG 60.304 47.826 0.00 0.00 41.56 3.34
229 230 1.266989 GTACAAGTGCCAAGTGGAAGC 59.733 52.381 0.18 0.00 37.39 3.86
271 272 1.375396 GGTGACATGTACGCTGGCA 60.375 57.895 0.00 0.00 0.00 4.92
276 277 0.871722 TGCTTTGGTGACATGTACGC 59.128 50.000 0.00 0.00 42.32 4.42
278 279 1.871039 ACGTGCTTTGGTGACATGTAC 59.129 47.619 0.00 0.00 42.32 2.90
297 299 1.772063 CTATGCGCGCCCAGGTTTAC 61.772 60.000 30.77 0.00 0.00 2.01
311 313 2.496718 GCGTCTGCGTCTACTATGC 58.503 57.895 0.00 0.00 40.81 3.14
463 471 7.036829 CCATGATTAGTTGAATTGACATGCAA 58.963 34.615 0.00 5.27 41.53 4.08
474 482 4.520874 TCAAAACGGCCATGATTAGTTGAA 59.479 37.500 2.24 0.00 0.00 2.69
793 2549 4.187694 CAAGAAGTACAATGAGAGGCTCC 58.812 47.826 11.71 3.35 0.00 4.70
816 2575 0.606401 CCGCAGCAGAAAAGGAGGAA 60.606 55.000 0.00 0.00 0.00 3.36
985 2744 0.904865 TTCATGGAGCTCTGGTCGGT 60.905 55.000 14.64 0.00 0.00 4.69
1209 3828 0.739462 CAGTTGCCATTGCCATGCAG 60.739 55.000 0.00 0.00 40.61 4.41
1219 3838 2.715749 TACAGCTATGCAGTTGCCAT 57.284 45.000 1.06 0.00 41.18 4.40
1276 3899 4.433615 CCTGTGGATGCGTACATATATCC 58.566 47.826 0.00 0.00 36.35 2.59
1414 4037 3.477530 GGATTAGAGTTGCCATGGGTAC 58.522 50.000 15.13 0.00 0.00 3.34
1415 4038 2.441750 GGGATTAGAGTTGCCATGGGTA 59.558 50.000 15.13 0.00 0.00 3.69
1416 4039 1.215423 GGGATTAGAGTTGCCATGGGT 59.785 52.381 15.13 0.00 0.00 4.51
1417 4040 1.496429 AGGGATTAGAGTTGCCATGGG 59.504 52.381 15.13 0.00 0.00 4.00
1546 4524 5.906113 AGTCTGAAGATGTGTTCGAGTAT 57.094 39.130 0.00 0.00 0.00 2.12
1633 4611 4.010349 GGTCCTTGTATTCTGGAAACCTG 58.990 47.826 0.00 0.00 0.00 4.00
1639 4617 1.066430 GCACGGTCCTTGTATTCTGGA 60.066 52.381 0.00 0.00 0.00 3.86
1642 4620 1.276622 AGGCACGGTCCTTGTATTCT 58.723 50.000 0.00 0.00 30.82 2.40
1645 4623 1.276622 AGAAGGCACGGTCCTTGTAT 58.723 50.000 14.09 0.00 45.92 2.29
1783 4761 8.788813 GTCGAAAACGAAGATAGAAAACGTATA 58.211 33.333 0.00 0.00 36.20 1.47
1786 4764 5.898225 GTCGAAAACGAAGATAGAAAACGT 58.102 37.500 0.00 0.00 38.81 3.99
1810 4853 8.142994 TGTTCAGAAGAAATTAGTCTTGTGTC 57.857 34.615 13.69 10.18 44.92 3.67
1894 4937 0.548510 CCCCTGGATGTTCCTCTTCC 59.451 60.000 0.00 0.00 37.46 3.46
1942 4985 2.223066 GCGTAGACCTCATCGGATATCG 60.223 54.545 0.00 0.00 40.90 2.92
1952 4995 1.067142 GTGACATTGGCGTAGACCTCA 60.067 52.381 0.00 0.00 25.51 3.86
2360 5492 1.606668 TGGGTGAAAATGACAAGCGTC 59.393 47.619 0.00 0.00 42.93 5.19
2579 5835 5.363939 TCATTGGGTGGTGAATTTTGAAAC 58.636 37.500 0.00 0.00 0.00 2.78
2614 5870 7.065803 CACGGAATCAAAATAACCACTGTAGAT 59.934 37.037 0.00 0.00 0.00 1.98
2626 5882 2.095213 GCGAGCACACGGAATCAAAATA 59.905 45.455 0.00 0.00 0.00 1.40
2676 5932 1.122632 TGGTCACGGTTAGGCCAAGA 61.123 55.000 5.01 0.00 36.97 3.02
2685 5941 1.374947 CCATGGAGTGGTCACGGTT 59.625 57.895 5.56 0.00 43.44 4.44
2686 5942 3.068881 CCATGGAGTGGTCACGGT 58.931 61.111 5.56 0.00 43.44 4.83
2715 5971 1.202663 GGATTTACCTCCTCCTTCGCC 60.203 57.143 0.00 0.00 35.41 5.54
2864 6139 1.000396 GGAACCAGATGGCCAGCTT 60.000 57.895 23.79 7.19 39.32 3.74
2952 6227 2.287373 GCATATGACTCACTGCTCTTGC 59.713 50.000 6.97 0.00 40.20 4.01
3181 7658 8.533153 GTCTATTAGAAATACGAGAAGTGCAAC 58.467 37.037 0.00 0.00 0.00 4.17
3213 7690 4.278919 CCAAAATTTACAAGGTACACCGGT 59.721 41.667 0.00 0.00 42.08 5.28
3214 7691 4.519730 TCCAAAATTTACAAGGTACACCGG 59.480 41.667 0.00 0.00 42.08 5.28
3215 7692 5.239963 ACTCCAAAATTTACAAGGTACACCG 59.760 40.000 0.00 0.00 42.08 4.94
3235 7712 2.225255 GCTCTTGCTCTTCACAAACTCC 59.775 50.000 0.00 0.00 36.03 3.85
3252 7729 5.108187 TGAATAAAATCTCTGCAGGCTCT 57.892 39.130 15.13 0.00 0.00 4.09
3253 7730 5.824904 TTGAATAAAATCTCTGCAGGCTC 57.175 39.130 15.13 0.00 0.00 4.70
3254 7731 7.014038 CCTTATTGAATAAAATCTCTGCAGGCT 59.986 37.037 15.13 0.00 0.00 4.58
3255 7732 7.013655 TCCTTATTGAATAAAATCTCTGCAGGC 59.986 37.037 15.13 0.00 0.00 4.85
3256 7733 8.455903 TCCTTATTGAATAAAATCTCTGCAGG 57.544 34.615 15.13 4.77 0.00 4.85
3258 7735 9.685276 TTCTCCTTATTGAATAAAATCTCTGCA 57.315 29.630 0.00 0.00 0.00 4.41
3331 7810 2.092968 CCAGCCAAGACTACATAAGCCA 60.093 50.000 0.00 0.00 0.00 4.75
3349 7834 5.010933 AGTATCGTATGAGGGTATGTCCAG 58.989 45.833 0.00 0.00 38.11 3.86
3380 7865 5.457140 TGCCACGTATCAATTCAAGAAAAC 58.543 37.500 0.00 0.00 0.00 2.43
3415 7901 4.740934 GCAGTTTCTCAGTAGTGTTGGTCT 60.741 45.833 0.00 0.00 0.00 3.85
3428 7914 5.586243 GCTTCCACATATAAGCAGTTTCTCA 59.414 40.000 3.54 0.00 45.89 3.27
3438 7924 6.349115 GCCATTGATGAGCTTCCACATATAAG 60.349 42.308 0.00 0.00 0.00 1.73
3463 7949 1.941812 GGATACAAATGCCTCCGCG 59.058 57.895 0.00 0.00 38.08 6.46
3482 7968 0.328258 GTGGCCAGATTACCAGTGGT 59.672 55.000 20.91 20.91 36.38 4.16
3517 8003 3.692593 ACCGTGAAAAATACCCTACATGC 59.307 43.478 0.00 0.00 0.00 4.06
3528 8014 9.594478 AACTAAAATGAAAGAACCGTGAAAAAT 57.406 25.926 0.00 0.00 0.00 1.82
3590 8076 9.340327 CGAAATTGTAAAAAGTTCACGAATTTG 57.660 29.630 0.00 0.00 0.00 2.32
3591 8077 9.078753 ACGAAATTGTAAAAAGTTCACGAATTT 57.921 25.926 0.00 0.00 0.00 1.82
3592 8078 8.528295 CACGAAATTGTAAAAAGTTCACGAATT 58.472 29.630 0.00 0.00 0.00 2.17
3593 8079 7.305763 GCACGAAATTGTAAAAAGTTCACGAAT 60.306 33.333 0.00 0.00 0.00 3.34
3594 8080 6.021311 GCACGAAATTGTAAAAAGTTCACGAA 60.021 34.615 0.00 0.00 0.00 3.85
3595 8081 5.452944 GCACGAAATTGTAAAAAGTTCACGA 59.547 36.000 0.00 0.00 0.00 4.35
3596 8082 5.228220 TGCACGAAATTGTAAAAAGTTCACG 59.772 36.000 0.00 0.00 0.00 4.35
3597 8083 6.399626 GTGCACGAAATTGTAAAAAGTTCAC 58.600 36.000 0.00 0.00 0.00 3.18
3598 8084 5.517054 GGTGCACGAAATTGTAAAAAGTTCA 59.483 36.000 11.45 0.00 0.00 3.18
3599 8085 5.746721 AGGTGCACGAAATTGTAAAAAGTTC 59.253 36.000 11.45 0.00 0.00 3.01
3600 8086 5.656480 AGGTGCACGAAATTGTAAAAAGTT 58.344 33.333 11.45 0.00 0.00 2.66
3601 8087 5.257082 AGGTGCACGAAATTGTAAAAAGT 57.743 34.783 11.45 0.00 0.00 2.66
3602 8088 5.977129 AGAAGGTGCACGAAATTGTAAAAAG 59.023 36.000 11.45 0.00 0.00 2.27
3603 8089 5.897050 AGAAGGTGCACGAAATTGTAAAAA 58.103 33.333 11.45 0.00 0.00 1.94
3604 8090 5.508200 AGAAGGTGCACGAAATTGTAAAA 57.492 34.783 11.45 0.00 0.00 1.52
3605 8091 5.508200 AAGAAGGTGCACGAAATTGTAAA 57.492 34.783 11.45 0.00 0.00 2.01
3606 8092 5.066634 TGAAAGAAGGTGCACGAAATTGTAA 59.933 36.000 11.45 0.00 0.00 2.41
3607 8093 4.576873 TGAAAGAAGGTGCACGAAATTGTA 59.423 37.500 11.45 0.00 0.00 2.41
3608 8094 3.380004 TGAAAGAAGGTGCACGAAATTGT 59.620 39.130 11.45 0.00 0.00 2.71
3609 8095 3.963665 TGAAAGAAGGTGCACGAAATTG 58.036 40.909 11.45 0.00 0.00 2.32
3610 8096 3.882888 TCTGAAAGAAGGTGCACGAAATT 59.117 39.130 11.45 2.76 42.31 1.82
3611 8097 3.476552 TCTGAAAGAAGGTGCACGAAAT 58.523 40.909 11.45 0.00 42.31 2.17
3612 8098 2.912771 TCTGAAAGAAGGTGCACGAAA 58.087 42.857 11.45 0.00 42.31 3.46
3613 8099 2.613026 TCTGAAAGAAGGTGCACGAA 57.387 45.000 11.45 0.00 42.31 3.85
3666 8152 9.936759 TTTAGAAAAGTTCACAGGTTTGAAAAT 57.063 25.926 0.00 0.00 37.24 1.82
3668 8154 9.765795 TTTTTAGAAAAGTTCACAGGTTTGAAA 57.234 25.926 0.00 0.00 37.24 2.69
3669 8155 9.418045 CTTTTTAGAAAAGTTCACAGGTTTGAA 57.582 29.630 5.26 0.00 32.94 2.69
3670 8156 8.581578 ACTTTTTAGAAAAGTTCACAGGTTTGA 58.418 29.630 11.81 0.00 37.18 2.69
3671 8157 8.757164 ACTTTTTAGAAAAGTTCACAGGTTTG 57.243 30.769 11.81 0.00 37.18 2.93
3711 8197 8.346476 TCGTCATTTGAAAATTTTCACGAAAT 57.654 26.923 28.78 22.55 45.99 2.17
3712 8198 7.742019 TCGTCATTTGAAAATTTTCACGAAA 57.258 28.000 28.78 21.52 45.99 3.46
3713 8199 7.742019 TTCGTCATTTGAAAATTTTCACGAA 57.258 28.000 31.37 31.37 45.99 3.85
3714 8200 7.922505 ATTCGTCATTTGAAAATTTTCACGA 57.077 28.000 28.78 27.49 45.99 4.35
3763 8249 7.617041 AAAACAATCACGAATTTGGGAAAAA 57.383 28.000 0.63 0.00 0.00 1.94
3771 8257 9.008289 GCAAAAATGAAAAACAATCACGAATTT 57.992 25.926 0.00 0.00 0.00 1.82
3772 8258 7.372918 CGCAAAAATGAAAAACAATCACGAATT 59.627 29.630 0.00 0.00 0.00 2.17
3775 8261 5.516696 TCGCAAAAATGAAAAACAATCACGA 59.483 32.000 0.00 0.00 0.00 4.35
3777 8263 7.179410 AGTTCGCAAAAATGAAAAACAATCAC 58.821 30.769 0.00 0.00 0.00 3.06
3780 8266 8.962857 AAAAGTTCGCAAAAATGAAAAACAAT 57.037 23.077 0.00 0.00 0.00 2.71
3784 8270 7.584987 TGGAAAAAGTTCGCAAAAATGAAAAA 58.415 26.923 0.00 0.00 34.28 1.94
3786 8272 6.727824 TGGAAAAAGTTCGCAAAAATGAAA 57.272 29.167 0.00 0.00 34.28 2.69
3789 8275 7.967771 AATTTGGAAAAAGTTCGCAAAAATG 57.032 28.000 0.00 0.00 37.41 2.32
3790 8276 9.662545 CATAATTTGGAAAAAGTTCGCAAAAAT 57.337 25.926 0.00 0.00 37.41 1.82
3791 8277 8.883731 TCATAATTTGGAAAAAGTTCGCAAAAA 58.116 25.926 0.00 0.00 37.41 1.94
3794 8280 7.708752 AGTTCATAATTTGGAAAAAGTTCGCAA 59.291 29.630 0.00 0.00 34.28 4.85
3795 8281 7.206687 AGTTCATAATTTGGAAAAAGTTCGCA 58.793 30.769 0.00 0.00 34.28 5.10
3796 8282 7.637709 AGTTCATAATTTGGAAAAAGTTCGC 57.362 32.000 0.00 0.00 34.28 4.70
3826 8312 9.810231 ACGACATTTCATATTTTTGCAAATTTC 57.190 25.926 13.65 0.00 34.29 2.17
3829 8315 8.531622 TCACGACATTTCATATTTTTGCAAAT 57.468 26.923 13.65 1.10 36.52 2.32
3830 8316 7.936950 TCACGACATTTCATATTTTTGCAAA 57.063 28.000 8.05 8.05 0.00 3.68
3831 8317 7.357941 CGTTCACGACATTTCATATTTTTGCAA 60.358 33.333 0.00 0.00 43.02 4.08
3832 8318 6.087423 CGTTCACGACATTTCATATTTTTGCA 59.913 34.615 0.00 0.00 43.02 4.08
3835 8321 8.568732 AAACGTTCACGACATTTCATATTTTT 57.431 26.923 6.30 0.00 43.02 1.94
3836 8322 8.568732 AAAACGTTCACGACATTTCATATTTT 57.431 26.923 6.30 0.00 43.02 1.82
3837 8323 8.568732 AAAAACGTTCACGACATTTCATATTT 57.431 26.923 6.30 0.00 43.02 1.40
3914 9931 7.875041 TGACTGTTGACTTTTCAAAAATGGAAA 59.125 29.630 0.00 0.00 43.52 3.13
3915 9932 7.382110 TGACTGTTGACTTTTCAAAAATGGAA 58.618 30.769 0.00 0.00 43.52 3.53
3918 9935 8.243289 AGTTGACTGTTGACTTTTCAAAAATG 57.757 30.769 0.00 0.00 43.52 2.32
3924 9941 4.876107 GGAGAGTTGACTGTTGACTTTTCA 59.124 41.667 0.00 0.00 0.00 2.69
3925 9942 4.876107 TGGAGAGTTGACTGTTGACTTTTC 59.124 41.667 0.00 1.98 0.00 2.29
3926 9943 4.843728 TGGAGAGTTGACTGTTGACTTTT 58.156 39.130 0.00 0.00 0.00 2.27
3927 9944 4.487714 TGGAGAGTTGACTGTTGACTTT 57.512 40.909 0.00 0.00 0.00 2.66
3928 9945 4.384056 CATGGAGAGTTGACTGTTGACTT 58.616 43.478 0.00 0.00 0.00 3.01
3929 9946 3.244353 CCATGGAGAGTTGACTGTTGACT 60.244 47.826 5.56 0.00 0.00 3.41
3931 9948 2.705658 ACCATGGAGAGTTGACTGTTGA 59.294 45.455 21.47 0.00 0.00 3.18
3932 9949 3.070018 GACCATGGAGAGTTGACTGTTG 58.930 50.000 21.47 0.00 0.00 3.33
3934 9951 2.329267 TGACCATGGAGAGTTGACTGT 58.671 47.619 21.47 0.00 0.00 3.55
3936 9953 2.289072 CGTTGACCATGGAGAGTTGACT 60.289 50.000 21.47 0.00 0.00 3.41
3938 9955 1.967779 TCGTTGACCATGGAGAGTTGA 59.032 47.619 21.47 6.00 0.00 3.18
3939 9956 2.455674 TCGTTGACCATGGAGAGTTG 57.544 50.000 21.47 3.47 0.00 3.16
3940 9957 3.338249 CAATCGTTGACCATGGAGAGTT 58.662 45.455 21.47 0.00 0.00 3.01
3941 9958 2.936993 GCAATCGTTGACCATGGAGAGT 60.937 50.000 21.47 5.94 0.00 3.24
3942 9959 1.667724 GCAATCGTTGACCATGGAGAG 59.332 52.381 21.47 4.95 0.00 3.20
3944 9961 1.399440 CTGCAATCGTTGACCATGGAG 59.601 52.381 21.47 4.20 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.