Multiple sequence alignment - TraesCS5D01G250300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G250300 chr5D 100.000 2729 0 0 2551 5279 356800679 356797951 0.000000e+00 5040
1 TraesCS5D01G250300 chr5D 100.000 2045 0 0 1 2045 356803229 356801185 0.000000e+00 3777
2 TraesCS5D01G250300 chr5D 76.094 1280 199 56 2611 3846 356838393 356837177 2.130000e-158 569
3 TraesCS5D01G250300 chr5D 91.971 411 24 3 3482 3892 356687442 356687041 7.670000e-158 568
4 TraesCS5D01G250300 chr5D 92.391 368 22 1 4071 4438 356662674 356662313 2.180000e-143 520
5 TraesCS5D01G250300 chr5D 86.902 481 34 11 4465 4919 541842721 541842244 3.650000e-141 512
6 TraesCS5D01G250300 chr5D 90.960 354 31 1 4927 5279 268909093 268908740 4.780000e-130 475
7 TraesCS5D01G250300 chr5D 85.514 428 49 8 2787 3213 356691017 356690602 8.120000e-118 435
8 TraesCS5D01G250300 chr5D 84.135 416 53 8 989 1402 357017106 357016702 1.780000e-104 390
9 TraesCS5D01G250300 chr5D 90.559 286 20 2 3205 3490 356688423 356688145 6.460000e-99 372
10 TraesCS5D01G250300 chr5D 81.735 438 63 13 968 1397 356838929 356838501 3.030000e-92 350
11 TraesCS5D01G250300 chr5D 79.727 513 77 19 2824 3323 356910804 356910306 3.910000e-91 346
12 TraesCS5D01G250300 chr5D 85.531 311 45 0 2805 3115 357016410 357016100 5.100000e-85 326
13 TraesCS5D01G250300 chr5D 83.951 324 52 0 2805 3128 356973876 356973553 1.430000e-80 311
14 TraesCS5D01G250300 chr5D 93.220 177 10 2 3896 4071 356662892 356662717 5.240000e-65 259
15 TraesCS5D01G250300 chr5A 90.167 1851 117 18 2609 4441 456088220 456090023 0.000000e+00 2350
16 TraesCS5D01G250300 chr5A 90.834 1091 72 11 2604 3690 458177984 458176918 0.000000e+00 1435
17 TraesCS5D01G250300 chr5A 86.943 942 74 16 461 1398 456087253 456088149 0.000000e+00 1013
18 TraesCS5D01G250300 chr5A 91.242 765 36 10 3685 4441 458176402 458175661 0.000000e+00 1013
19 TraesCS5D01G250300 chr5A 93.423 669 18 9 1392 2045 458178854 458178197 0.000000e+00 968
20 TraesCS5D01G250300 chr5A 88.249 834 65 16 4471 5274 503484880 503484050 0.000000e+00 966
21 TraesCS5D01G250300 chr5A 84.663 965 98 34 464 1413 458179819 458178890 0.000000e+00 917
22 TraesCS5D01G250300 chr5A 84.314 510 65 8 2611 3117 458192703 458192206 7.950000e-133 484
23 TraesCS5D01G250300 chr5A 84.118 510 63 9 2611 3117 456069027 456069521 1.330000e-130 477
24 TraesCS5D01G250300 chr5A 80.969 557 81 14 2581 3115 458278871 458278318 8.180000e-113 418
25 TraesCS5D01G250300 chr5A 81.735 438 64 10 968 1397 458193240 458192811 8.410000e-93 351
26 TraesCS5D01G250300 chr5A 81.422 436 67 11 968 1397 456068514 456068941 1.410000e-90 344
27 TraesCS5D01G250300 chr5A 85.410 329 48 0 2805 3133 458273314 458272986 5.060000e-90 342
28 TraesCS5D01G250300 chr5A 86.538 260 26 4 553 807 456085860 456086115 1.450000e-70 278
29 TraesCS5D01G250300 chr5A 77.963 481 68 18 3199 3654 458192104 458191637 3.130000e-67 267
30 TraesCS5D01G250300 chr5A 87.838 148 9 1 1907 2045 116618574 116618721 1.180000e-36 165
31 TraesCS5D01G250300 chr5A 73.895 475 84 20 3203 3651 456069588 456070048 2.550000e-33 154
32 TraesCS5D01G250300 chr5B 91.834 1543 92 13 3747 5279 421611519 421610001 0.000000e+00 2121
33 TraesCS5D01G250300 chr5B 85.858 1195 100 28 2557 3699 421612711 421611534 0.000000e+00 1206
34 TraesCS5D01G250300 chr5B 93.900 541 20 6 3904 4441 421511174 421510644 0.000000e+00 804
35 TraesCS5D01G250300 chr5B 90.421 522 42 3 891 1411 421613261 421612747 0.000000e+00 680
36 TraesCS5D01G250300 chr5B 80.175 570 86 15 2581 3127 421717641 421717076 8.230000e-108 401
37 TraesCS5D01G250300 chr5B 83.894 416 54 7 989 1402 421718086 421717682 8.290000e-103 385
38 TraesCS5D01G250300 chr5B 89.667 300 31 0 2797 3096 421621320 421621021 2.980000e-102 383
39 TraesCS5D01G250300 chr5B 84.956 339 43 5 1076 1413 421697866 421697535 2.360000e-88 337
40 TraesCS5D01G250300 chr5B 81.609 435 38 23 461 889 421613786 421613388 6.600000e-84 322
41 TraesCS5D01G250300 chr5B 90.952 210 16 1 3697 3903 421511566 421511357 4.030000e-71 279
42 TraesCS5D01G250300 chr5B 76.618 479 75 17 3205 3654 421620939 421620469 4.110000e-56 230
43 TraesCS5D01G250300 chr5B 97.674 43 1 0 3883 3925 421511346 421511304 2.040000e-09 75
44 TraesCS5D01G250300 chr2B 95.263 380 18 0 1 380 784799763 784799384 2.100000e-168 603
45 TraesCS5D01G250300 chr2B 88.196 449 43 7 4465 4905 13197116 13196670 1.300000e-145 527
46 TraesCS5D01G250300 chr2B 95.294 170 8 0 1 170 784794093 784793924 2.420000e-68 270
47 TraesCS5D01G250300 chr2B 94.521 146 8 0 169 314 784785011 784784866 5.320000e-55 226
48 TraesCS5D01G250300 chr3D 90.244 451 29 8 4468 4909 538408367 538407923 4.580000e-160 575
49 TraesCS5D01G250300 chr3D 88.742 453 37 9 4466 4910 31387374 31387820 4.650000e-150 542
50 TraesCS5D01G250300 chr3D 86.792 477 40 12 4466 4920 171587675 171587200 1.310000e-140 510
51 TraesCS5D01G250300 chr3D 90.141 355 33 2 4927 5279 105275675 105275321 1.340000e-125 460
52 TraesCS5D01G250300 chr3D 89.859 355 34 2 4927 5279 105193453 105193099 6.230000e-124 455
53 TraesCS5D01G250300 chr3D 89.694 359 33 4 4924 5279 196952504 196952861 6.230000e-124 455
54 TraesCS5D01G250300 chr3D 86.194 268 32 3 1724 1989 613582559 613582823 8.650000e-73 285
55 TraesCS5D01G250300 chr6D 88.309 479 30 8 4466 4919 7513415 7513892 7.730000e-153 551
56 TraesCS5D01G250300 chr6D 87.751 449 37 8 4468 4910 23630500 23630064 4.720000e-140 508
57 TraesCS5D01G250300 chr1D 87.473 463 35 13 4468 4909 279085143 279084683 3.650000e-141 512
58 TraesCS5D01G250300 chr1D 88.918 388 15 6 1 382 494475559 494475194 2.240000e-123 453
59 TraesCS5D01G250300 chr7A 87.168 452 29 13 4465 4905 492244900 492244467 2.210000e-133 486
60 TraesCS5D01G250300 chr4A 91.036 357 30 2 4923 5278 160245948 160245593 1.030000e-131 481
61 TraesCS5D01G250300 chr2A 89.130 368 40 0 4 371 34666050 34665683 4.820000e-125 459
62 TraesCS5D01G250300 chr3B 89.831 354 35 1 4927 5279 672578497 672578144 2.240000e-123 453
63 TraesCS5D01G250300 chr2D 89.385 358 36 2 4923 5279 633208871 633209227 2.900000e-122 449
64 TraesCS5D01G250300 chrUn 79.667 541 63 23 1514 2045 34139058 34139560 3.910000e-91 346
65 TraesCS5D01G250300 chr1A 82.984 382 58 6 3 379 500849729 500849350 6.550000e-89 339


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G250300 chr5D 356797951 356803229 5278 True 4408.500000 5040 100.000000 1 5279 2 chr5D.!!$R7 5278
1 TraesCS5D01G250300 chr5D 356837177 356838929 1752 True 459.500000 569 78.914500 968 3846 2 chr5D.!!$R8 2878
2 TraesCS5D01G250300 chr5D 356687041 356691017 3976 True 458.333333 568 89.348000 2787 3892 3 chr5D.!!$R6 1105
3 TraesCS5D01G250300 chr5D 356662313 356662892 579 True 389.500000 520 92.805500 3896 4438 2 chr5D.!!$R5 542
4 TraesCS5D01G250300 chr5D 357016100 357017106 1006 True 358.000000 390 84.833000 989 3115 2 chr5D.!!$R9 2126
5 TraesCS5D01G250300 chr5A 456085860 456090023 4163 False 1213.666667 2350 87.882667 461 4441 3 chr5A.!!$F3 3980
6 TraesCS5D01G250300 chr5A 458175661 458179819 4158 True 1083.250000 1435 90.040500 464 4441 4 chr5A.!!$R4 3977
7 TraesCS5D01G250300 chr5A 503484050 503484880 830 True 966.000000 966 88.249000 4471 5274 1 chr5A.!!$R3 803
8 TraesCS5D01G250300 chr5A 458278318 458278871 553 True 418.000000 418 80.969000 2581 3115 1 chr5A.!!$R2 534
9 TraesCS5D01G250300 chr5A 458191637 458193240 1603 True 367.333333 484 81.337333 968 3654 3 chr5A.!!$R5 2686
10 TraesCS5D01G250300 chr5A 456068514 456070048 1534 False 325.000000 477 79.811667 968 3651 3 chr5A.!!$F2 2683
11 TraesCS5D01G250300 chr5B 421610001 421613786 3785 True 1082.250000 2121 87.430500 461 5279 4 chr5B.!!$R3 4818
12 TraesCS5D01G250300 chr5B 421717076 421718086 1010 True 393.000000 401 82.034500 989 3127 2 chr5B.!!$R5 2138
13 TraesCS5D01G250300 chr5B 421510644 421511566 922 True 386.000000 804 94.175333 3697 4441 3 chr5B.!!$R2 744
14 TraesCS5D01G250300 chr5B 421620469 421621320 851 True 306.500000 383 83.142500 2797 3654 2 chr5B.!!$R4 857
15 TraesCS5D01G250300 chrUn 34139058 34139560 502 False 346.000000 346 79.667000 1514 2045 1 chrUn.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.106149 ATTAATCTCCCACCGGTCGC 59.894 55.0 2.59 0.0 0.00 5.19 F
130 131 0.114168 CCCTGGATCTCCTCCTCGAT 59.886 60.0 0.00 0.0 45.21 3.59 F
392 393 0.460987 GCGTCATCTCCACCTTCCAG 60.461 60.0 0.00 0.0 0.00 3.86 F
1349 2429 0.813184 TACCTCGTCGAATCGCCTTT 59.187 50.0 0.00 0.0 0.00 3.11 F
2845 4172 0.254178 AGCGGCCAACATGATCTTCT 59.746 50.0 2.24 0.0 0.00 2.85 F
3611 7910 0.036952 CAACGATCCAGAGGTGCAGT 60.037 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 3075 0.105709 GAGGGAGGGAGGAGGAGAAG 60.106 65.000 0.00 0.0 0.00 2.85 R
1901 3076 1.595058 GGAGGGAGGGAGGAGGAGAA 61.595 65.000 0.00 0.0 0.00 2.87 R
2019 3207 6.897706 TGAATCCACAAACTCAAATCATGA 57.102 33.333 0.00 0.0 36.38 3.07 R
2948 4275 0.103937 GAACCTCTCCAGCCATCTCG 59.896 60.000 0.00 0.0 0.00 4.04 R
3711 8532 0.037697 CTTCCGGACGTGTGGATGAA 60.038 55.000 1.83 0.0 33.42 2.57 R
4597 9664 0.473694 TGACCAGAGAGAAAGGCCCA 60.474 55.000 0.00 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.939760 ATCGGGGCGGACTCACCATA 62.940 60.000 0.00 0.00 38.90 2.74
20 21 2.727392 CGGGGCGGACTCACCATAA 61.727 63.158 0.00 0.00 38.90 1.90
21 22 1.146263 GGGGCGGACTCACCATAAG 59.854 63.158 0.00 0.00 38.90 1.73
22 23 1.623542 GGGGCGGACTCACCATAAGT 61.624 60.000 0.00 0.00 38.90 2.24
23 24 1.117150 GGGCGGACTCACCATAAGTA 58.883 55.000 0.00 0.00 38.90 2.24
24 25 1.692519 GGGCGGACTCACCATAAGTAT 59.307 52.381 0.00 0.00 38.90 2.12
25 26 2.104281 GGGCGGACTCACCATAAGTATT 59.896 50.000 0.00 0.00 38.90 1.89
26 27 3.131396 GGCGGACTCACCATAAGTATTG 58.869 50.000 0.00 0.00 38.90 1.90
27 28 2.544267 GCGGACTCACCATAAGTATTGC 59.456 50.000 0.00 0.00 38.90 3.56
29 30 3.477530 GGACTCACCATAAGTATTGCCC 58.522 50.000 0.00 0.00 38.79 5.36
30 31 3.131396 GACTCACCATAAGTATTGCCCG 58.869 50.000 0.00 0.00 0.00 6.13
31 32 1.873591 CTCACCATAAGTATTGCCCGC 59.126 52.381 0.00 0.00 0.00 6.13
32 33 1.210722 TCACCATAAGTATTGCCCGCA 59.789 47.619 0.00 0.00 0.00 5.69
33 34 2.020720 CACCATAAGTATTGCCCGCAA 58.979 47.619 4.31 4.31 40.47 4.85
34 35 2.622942 CACCATAAGTATTGCCCGCAAT 59.377 45.455 18.22 18.22 46.85 3.56
36 37 4.277174 CACCATAAGTATTGCCCGCAATTA 59.723 41.667 19.24 8.09 43.32 1.40
37 38 4.890581 ACCATAAGTATTGCCCGCAATTAA 59.109 37.500 19.24 0.63 43.32 1.40
38 39 5.538433 ACCATAAGTATTGCCCGCAATTAAT 59.462 36.000 19.24 8.90 43.32 1.40
39 40 6.092748 CCATAAGTATTGCCCGCAATTAATC 58.907 40.000 19.24 8.71 43.32 1.75
40 41 6.071952 CCATAAGTATTGCCCGCAATTAATCT 60.072 38.462 19.24 10.49 43.32 2.40
41 42 5.438761 AAGTATTGCCCGCAATTAATCTC 57.561 39.130 19.24 5.21 43.32 2.75
42 43 3.821033 AGTATTGCCCGCAATTAATCTCC 59.179 43.478 19.24 1.49 43.32 3.71
43 44 1.398692 TTGCCCGCAATTAATCTCCC 58.601 50.000 0.00 0.00 0.00 4.30
44 45 0.257328 TGCCCGCAATTAATCTCCCA 59.743 50.000 0.00 0.00 0.00 4.37
45 46 0.668535 GCCCGCAATTAATCTCCCAC 59.331 55.000 0.00 0.00 0.00 4.61
46 47 1.318576 CCCGCAATTAATCTCCCACC 58.681 55.000 0.00 0.00 0.00 4.61
48 49 0.944386 CGCAATTAATCTCCCACCGG 59.056 55.000 0.00 0.00 0.00 5.28
49 50 1.745827 CGCAATTAATCTCCCACCGGT 60.746 52.381 0.00 0.00 0.00 5.28
50 51 1.947456 GCAATTAATCTCCCACCGGTC 59.053 52.381 2.59 0.00 0.00 4.79
51 52 2.210116 CAATTAATCTCCCACCGGTCG 58.790 52.381 2.59 0.00 0.00 4.79
52 53 0.106149 ATTAATCTCCCACCGGTCGC 59.894 55.000 2.59 0.00 0.00 5.19
55 56 1.910580 AATCTCCCACCGGTCGCAAT 61.911 55.000 2.59 0.00 0.00 3.56
57 58 2.046700 TCCCACCGGTCGCAATTC 60.047 61.111 2.59 0.00 0.00 2.17
59 60 2.046314 CCACCGGTCGCAATTCCT 60.046 61.111 2.59 0.00 0.00 3.36
61 62 1.079127 CACCGGTCGCAATTCCTCT 60.079 57.895 2.59 0.00 0.00 3.69
63 64 1.521681 CCGGTCGCAATTCCTCTCC 60.522 63.158 0.00 0.00 0.00 3.71
64 65 1.521681 CGGTCGCAATTCCTCTCCC 60.522 63.158 0.00 0.00 0.00 4.30
65 66 1.602237 GGTCGCAATTCCTCTCCCA 59.398 57.895 0.00 0.00 0.00 4.37
66 67 0.744771 GGTCGCAATTCCTCTCCCAC 60.745 60.000 0.00 0.00 0.00 4.61
67 68 0.744771 GTCGCAATTCCTCTCCCACC 60.745 60.000 0.00 0.00 0.00 4.61
68 69 1.198094 TCGCAATTCCTCTCCCACCA 61.198 55.000 0.00 0.00 0.00 4.17
69 70 0.745845 CGCAATTCCTCTCCCACCAG 60.746 60.000 0.00 0.00 0.00 4.00
70 71 0.329596 GCAATTCCTCTCCCACCAGT 59.670 55.000 0.00 0.00 0.00 4.00
71 72 1.680249 GCAATTCCTCTCCCACCAGTC 60.680 57.143 0.00 0.00 0.00 3.51
72 73 0.905357 AATTCCTCTCCCACCAGTCG 59.095 55.000 0.00 0.00 0.00 4.18
73 74 1.617947 ATTCCTCTCCCACCAGTCGC 61.618 60.000 0.00 0.00 0.00 5.19
74 75 2.997315 CCTCTCCCACCAGTCGCA 60.997 66.667 0.00 0.00 0.00 5.10
75 76 2.575993 CTCTCCCACCAGTCGCAG 59.424 66.667 0.00 0.00 0.00 5.18
76 77 2.203640 TCTCCCACCAGTCGCAGT 60.204 61.111 0.00 0.00 0.00 4.40
77 78 1.821061 CTCTCCCACCAGTCGCAGTT 61.821 60.000 0.00 0.00 0.00 3.16
78 79 1.071471 CTCCCACCAGTCGCAGTTT 59.929 57.895 0.00 0.00 0.00 2.66
79 80 0.951040 CTCCCACCAGTCGCAGTTTC 60.951 60.000 0.00 0.00 0.00 2.78
80 81 1.071471 CCCACCAGTCGCAGTTTCT 59.929 57.895 0.00 0.00 0.00 2.52
81 82 0.951040 CCCACCAGTCGCAGTTTCTC 60.951 60.000 0.00 0.00 0.00 2.87
82 83 0.951040 CCACCAGTCGCAGTTTCTCC 60.951 60.000 0.00 0.00 0.00 3.71
83 84 0.951040 CACCAGTCGCAGTTTCTCCC 60.951 60.000 0.00 0.00 0.00 4.30
84 85 1.122019 ACCAGTCGCAGTTTCTCCCT 61.122 55.000 0.00 0.00 0.00 4.20
85 86 0.390472 CCAGTCGCAGTTTCTCCCTC 60.390 60.000 0.00 0.00 0.00 4.30
86 87 0.734253 CAGTCGCAGTTTCTCCCTCG 60.734 60.000 0.00 0.00 0.00 4.63
87 88 2.095252 GTCGCAGTTTCTCCCTCGC 61.095 63.158 0.00 0.00 0.00 5.03
89 90 2.815647 GCAGTTTCTCCCTCGCCG 60.816 66.667 0.00 0.00 0.00 6.46
90 91 2.125512 CAGTTTCTCCCTCGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
91 92 4.083862 AGTTTCTCCCTCGCCGGC 62.084 66.667 19.07 19.07 0.00 6.13
92 93 4.083862 GTTTCTCCCTCGCCGGCT 62.084 66.667 26.68 0.00 0.00 5.52
93 94 3.771160 TTTCTCCCTCGCCGGCTC 61.771 66.667 26.68 0.00 0.00 4.70
123 124 4.888325 CCCCGCCCTGGATCTCCT 62.888 72.222 0.00 0.00 42.00 3.69
124 125 3.237741 CCCGCCCTGGATCTCCTC 61.238 72.222 0.00 0.00 42.00 3.71
125 126 3.237741 CCGCCCTGGATCTCCTCC 61.238 72.222 0.00 0.00 45.19 4.30
126 127 2.123077 CGCCCTGGATCTCCTCCT 60.123 66.667 0.00 0.00 45.21 3.69
128 129 2.206536 GCCCTGGATCTCCTCCTCG 61.207 68.421 0.00 0.00 45.21 4.63
130 131 0.114168 CCCTGGATCTCCTCCTCGAT 59.886 60.000 0.00 0.00 45.21 3.59
131 132 1.255882 CCTGGATCTCCTCCTCGATG 58.744 60.000 0.00 0.00 45.21 3.84
132 133 0.602562 CTGGATCTCCTCCTCGATGC 59.397 60.000 0.00 0.00 45.21 3.91
133 134 1.175347 TGGATCTCCTCCTCGATGCG 61.175 60.000 0.00 0.00 45.21 4.73
134 135 1.080839 GATCTCCTCCTCGATGCGC 60.081 63.158 0.00 0.00 0.00 6.09
135 136 2.794627 GATCTCCTCCTCGATGCGCG 62.795 65.000 0.00 0.00 42.69 6.86
139 140 3.918220 CTCCTCGATGCGCGCAAC 61.918 66.667 39.68 33.89 40.61 4.17
145 146 4.070818 GATGCGCGCAACGTGACA 62.071 61.111 39.68 12.72 46.11 3.58
147 148 3.578089 ATGCGCGCAACGTGACAAG 62.578 57.895 39.68 0.00 46.11 3.16
149 150 4.368808 CGCGCAACGTGACAAGGG 62.369 66.667 8.75 0.00 39.94 3.95
150 151 2.970324 GCGCAACGTGACAAGGGA 60.970 61.111 0.30 0.00 0.00 4.20
151 152 2.539338 GCGCAACGTGACAAGGGAA 61.539 57.895 0.30 0.00 0.00 3.97
152 153 1.278637 CGCAACGTGACAAGGGAAC 59.721 57.895 0.00 0.00 0.00 3.62
167 168 4.390048 AACCCGATTGTGGTTCCG 57.610 55.556 1.15 0.00 42.38 4.30
168 169 1.302993 AACCCGATTGTGGTTCCGG 60.303 57.895 0.00 0.00 42.38 5.14
170 171 2.437716 CCGATTGTGGTTCCGGGG 60.438 66.667 0.00 0.00 38.42 5.73
171 172 2.437716 CGATTGTGGTTCCGGGGG 60.438 66.667 0.00 0.00 0.00 5.40
172 173 2.754254 GATTGTGGTTCCGGGGGC 60.754 66.667 0.00 0.00 0.00 5.80
190 191 3.322466 CAACACGAGCCCCCTCCT 61.322 66.667 0.00 0.00 34.49 3.69
191 192 3.322466 AACACGAGCCCCCTCCTG 61.322 66.667 0.00 0.00 34.49 3.86
192 193 4.640690 ACACGAGCCCCCTCCTGT 62.641 66.667 0.00 0.00 34.06 4.00
193 194 2.363795 CACGAGCCCCCTCCTGTA 60.364 66.667 0.00 0.00 34.49 2.74
196 197 3.155167 GAGCCCCCTCCTGTACCG 61.155 72.222 0.00 0.00 31.68 4.02
200 201 3.470888 CCCCTCCTGTACCGCCTG 61.471 72.222 0.00 0.00 0.00 4.85
201 202 2.683933 CCCTCCTGTACCGCCTGT 60.684 66.667 0.00 0.00 0.00 4.00
202 203 2.722201 CCCTCCTGTACCGCCTGTC 61.722 68.421 0.00 0.00 0.00 3.51
204 205 3.064987 CTCCTGTACCGCCTGTCCG 62.065 68.421 0.00 0.00 0.00 4.79
206 207 4.814294 CTGTACCGCCTGTCCGCC 62.814 72.222 0.00 0.00 0.00 6.13
214 215 2.106332 CCTGTCCGCCGTACATCC 59.894 66.667 0.00 0.00 0.00 3.51
215 216 2.106332 CTGTCCGCCGTACATCCC 59.894 66.667 0.00 0.00 0.00 3.85
216 217 3.441011 CTGTCCGCCGTACATCCCC 62.441 68.421 0.00 0.00 0.00 4.81
220 221 4.944372 CGCCGTACATCCCCGCTC 62.944 72.222 0.00 0.00 0.00 5.03
221 222 4.944372 GCCGTACATCCCCGCTCG 62.944 72.222 0.00 0.00 0.00 5.03
223 224 2.025727 CGTACATCCCCGCTCGTC 59.974 66.667 0.00 0.00 0.00 4.20
224 225 2.025727 GTACATCCCCGCTCGTCG 59.974 66.667 0.00 0.00 38.08 5.12
227 228 4.907034 CATCCCCGCTCGTCGACG 62.907 72.222 31.30 31.30 41.67 5.12
241 242 4.808238 GACGAGGTCGACCGTCGC 62.808 72.222 35.41 28.17 44.23 5.19
244 245 3.429141 GAGGTCGACCGTCGCTGA 61.429 66.667 28.26 0.00 40.21 4.26
245 246 3.384014 GAGGTCGACCGTCGCTGAG 62.384 68.421 28.26 0.00 40.21 3.35
246 247 3.735029 GGTCGACCGTCGCTGAGT 61.735 66.667 20.85 0.00 40.21 3.41
247 248 2.202324 GTCGACCGTCGCTGAGTC 60.202 66.667 16.24 0.00 40.21 3.36
248 249 3.429141 TCGACCGTCGCTGAGTCC 61.429 66.667 16.24 0.00 40.21 3.85
249 250 4.813526 CGACCGTCGCTGAGTCCG 62.814 72.222 8.21 0.00 31.14 4.79
259 260 4.329545 TGAGTCCGGGCCAAGCAC 62.330 66.667 0.08 0.00 0.00 4.40
266 267 3.134127 GGGCCAAGCACGATCACC 61.134 66.667 4.39 0.00 0.00 4.02
267 268 3.134127 GGCCAAGCACGATCACCC 61.134 66.667 0.00 0.00 0.00 4.61
269 270 2.819595 CCAAGCACGATCACCCCG 60.820 66.667 0.00 0.00 0.00 5.73
270 271 3.499737 CAAGCACGATCACCCCGC 61.500 66.667 0.00 0.00 0.00 6.13
282 283 3.454573 CCCCGCGGTGTAGCTGTA 61.455 66.667 26.12 0.00 34.40 2.74
283 284 2.104331 CCCGCGGTGTAGCTGTAG 59.896 66.667 26.12 0.00 34.40 2.74
285 286 2.104331 CGCGGTGTAGCTGTAGGG 59.896 66.667 0.00 0.00 34.40 3.53
286 287 2.202892 GCGGTGTAGCTGTAGGGC 60.203 66.667 0.00 0.00 0.00 5.19
288 289 2.499685 GGTGTAGCTGTAGGGCCG 59.500 66.667 0.00 0.00 0.00 6.13
290 291 3.467226 TGTAGCTGTAGGGCCGCC 61.467 66.667 0.00 0.00 0.00 6.13
291 292 4.587189 GTAGCTGTAGGGCCGCCG 62.587 72.222 2.55 0.00 0.00 6.46
296 297 3.310860 CTGTAGGGCCGCCGTCTTT 62.311 63.158 8.15 0.00 0.00 2.52
298 299 1.227176 GTAGGGCCGCCGTCTTTAG 60.227 63.158 8.15 0.00 0.00 1.85
300 301 0.757935 TAGGGCCGCCGTCTTTAGAT 60.758 55.000 8.15 0.00 0.00 1.98
301 302 1.153229 GGGCCGCCGTCTTTAGATT 60.153 57.895 2.55 0.00 0.00 2.40
302 303 1.436983 GGGCCGCCGTCTTTAGATTG 61.437 60.000 2.55 0.00 0.00 2.67
303 304 1.436983 GGCCGCCGTCTTTAGATTGG 61.437 60.000 0.00 0.00 0.00 3.16
304 305 2.014594 CCGCCGTCTTTAGATTGGC 58.985 57.895 13.13 13.13 41.86 4.52
307 308 2.014594 CCGTCTTTAGATTGGCGGC 58.985 57.895 0.00 0.00 32.73 6.53
308 309 1.636340 CGTCTTTAGATTGGCGGCG 59.364 57.895 0.51 0.51 0.00 6.46
309 310 0.804544 CGTCTTTAGATTGGCGGCGA 60.805 55.000 12.98 0.00 0.00 5.54
310 311 1.365699 GTCTTTAGATTGGCGGCGAA 58.634 50.000 12.98 0.00 0.00 4.70
314 315 1.022451 TTAGATTGGCGGCGAACCAC 61.022 55.000 12.98 0.00 36.76 4.16
315 316 4.160635 GATTGGCGGCGAACCACG 62.161 66.667 12.98 0.00 45.66 4.94
368 369 1.733399 GTCGCCAAGGAGACGTGTC 60.733 63.158 3.66 3.66 38.23 3.67
369 370 2.805353 CGCCAAGGAGACGTGTCG 60.805 66.667 6.62 0.00 38.23 4.35
372 373 1.080705 CCAAGGAGACGTGTCGGAC 60.081 63.158 6.62 0.00 38.23 4.79
380 381 3.238241 CGTGTCGGACGCGTCATC 61.238 66.667 37.26 25.81 45.94 2.92
381 382 2.178521 GTGTCGGACGCGTCATCT 59.821 61.111 37.26 3.12 0.00 2.90
382 383 1.868251 GTGTCGGACGCGTCATCTC 60.868 63.158 37.26 23.89 0.00 2.75
385 386 2.579787 CGGACGCGTCATCTCCAC 60.580 66.667 37.26 18.88 0.00 4.02
386 387 2.202756 GGACGCGTCATCTCCACC 60.203 66.667 37.26 17.14 0.00 4.61
387 388 2.711922 GGACGCGTCATCTCCACCT 61.712 63.158 37.26 0.00 0.00 4.00
388 389 1.215647 GACGCGTCATCTCCACCTT 59.784 57.895 33.09 0.00 0.00 3.50
390 391 1.519455 CGCGTCATCTCCACCTTCC 60.519 63.158 0.00 0.00 0.00 3.46
392 393 0.460987 GCGTCATCTCCACCTTCCAG 60.461 60.000 0.00 0.00 0.00 3.86
393 394 1.186200 CGTCATCTCCACCTTCCAGA 58.814 55.000 0.00 0.00 0.00 3.86
394 395 1.134965 CGTCATCTCCACCTTCCAGAC 60.135 57.143 0.00 0.00 0.00 3.51
395 396 1.208293 GTCATCTCCACCTTCCAGACC 59.792 57.143 0.00 0.00 0.00 3.85
396 397 1.203300 TCATCTCCACCTTCCAGACCA 60.203 52.381 0.00 0.00 0.00 4.02
397 398 1.630369 CATCTCCACCTTCCAGACCAA 59.370 52.381 0.00 0.00 0.00 3.67
398 399 1.814429 TCTCCACCTTCCAGACCAAA 58.186 50.000 0.00 0.00 0.00 3.28
399 400 1.420138 TCTCCACCTTCCAGACCAAAC 59.580 52.381 0.00 0.00 0.00 2.93
400 401 1.421646 CTCCACCTTCCAGACCAAACT 59.578 52.381 0.00 0.00 0.00 2.66
401 402 1.420138 TCCACCTTCCAGACCAAACTC 59.580 52.381 0.00 0.00 0.00 3.01
402 403 1.142870 CCACCTTCCAGACCAAACTCA 59.857 52.381 0.00 0.00 0.00 3.41
406 407 4.878397 CACCTTCCAGACCAAACTCATATC 59.122 45.833 0.00 0.00 0.00 1.63
408 409 4.383118 CCTTCCAGACCAAACTCATATCGT 60.383 45.833 0.00 0.00 0.00 3.73
409 410 5.163447 CCTTCCAGACCAAACTCATATCGTA 60.163 44.000 0.00 0.00 0.00 3.43
410 411 6.463049 CCTTCCAGACCAAACTCATATCGTAT 60.463 42.308 0.00 0.00 0.00 3.06
412 413 6.884832 TCCAGACCAAACTCATATCGTATTT 58.115 36.000 0.00 0.00 0.00 1.40
414 415 8.647796 TCCAGACCAAACTCATATCGTATTTAT 58.352 33.333 0.00 0.00 0.00 1.40
415 416 9.273016 CCAGACCAAACTCATATCGTATTTATT 57.727 33.333 0.00 0.00 0.00 1.40
432 433 8.353653 CGTATTTATTTAGAGCATGTACGTACG 58.646 37.037 20.18 15.01 0.00 3.67
433 434 9.385902 GTATTTATTTAGAGCATGTACGTACGA 57.614 33.333 24.41 10.29 0.00 3.43
435 436 8.686397 TTTATTTAGAGCATGTACGTACGAAA 57.314 30.769 24.41 8.06 0.00 3.46
436 437 8.686397 TTATTTAGAGCATGTACGTACGAAAA 57.314 30.769 24.41 12.02 0.00 2.29
437 438 6.621737 TTTAGAGCATGTACGTACGAAAAG 57.378 37.500 24.41 8.57 0.00 2.27
439 440 4.413087 AGAGCATGTACGTACGAAAAGAG 58.587 43.478 24.41 8.04 0.00 2.85
441 442 2.664568 GCATGTACGTACGAAAAGAGCA 59.335 45.455 24.41 9.50 0.00 4.26
442 443 3.306166 GCATGTACGTACGAAAAGAGCAT 59.694 43.478 24.41 11.24 0.00 3.79
443 444 4.201685 GCATGTACGTACGAAAAGAGCATT 60.202 41.667 24.41 0.00 0.00 3.56
444 445 5.670341 GCATGTACGTACGAAAAGAGCATTT 60.670 40.000 24.41 0.00 0.00 2.32
445 446 5.258685 TGTACGTACGAAAAGAGCATTTG 57.741 39.130 24.41 0.00 0.00 2.32
446 447 4.983538 TGTACGTACGAAAAGAGCATTTGA 59.016 37.500 24.41 0.00 0.00 2.69
447 448 4.647291 ACGTACGAAAAGAGCATTTGAG 57.353 40.909 24.41 0.00 0.00 3.02
448 449 4.056050 ACGTACGAAAAGAGCATTTGAGT 58.944 39.130 24.41 0.00 0.00 3.41
449 450 4.510340 ACGTACGAAAAGAGCATTTGAGTT 59.490 37.500 24.41 0.00 0.00 3.01
450 451 5.007332 ACGTACGAAAAGAGCATTTGAGTTT 59.993 36.000 24.41 0.00 0.00 2.66
451 452 5.907391 CGTACGAAAAGAGCATTTGAGTTTT 59.093 36.000 10.44 0.00 0.00 2.43
452 453 6.129717 CGTACGAAAAGAGCATTTGAGTTTTG 60.130 38.462 10.44 0.00 0.00 2.44
453 454 5.650543 ACGAAAAGAGCATTTGAGTTTTGT 58.349 33.333 0.00 0.00 0.00 2.83
454 455 5.516339 ACGAAAAGAGCATTTGAGTTTTGTG 59.484 36.000 0.00 0.00 0.00 3.33
456 457 6.253298 CGAAAAGAGCATTTGAGTTTTGTGAA 59.747 34.615 0.00 0.00 0.00 3.18
458 459 4.936891 AGAGCATTTGAGTTTTGTGAACC 58.063 39.130 0.00 0.00 0.00 3.62
459 460 4.051237 GAGCATTTGAGTTTTGTGAACCC 58.949 43.478 0.00 0.00 0.00 4.11
504 1438 4.029520 ACTAGTGTACTCCCTCTCGAGTA 58.970 47.826 13.13 0.00 43.00 2.59
515 1449 3.215151 CCTCTCGAGTAGATGCCACTAA 58.785 50.000 13.13 0.00 32.41 2.24
579 1513 2.414559 CGTGTGGGCTTTGTCAATGATC 60.415 50.000 2.74 0.00 0.00 2.92
605 1539 2.884639 CCGTGGGTCTTTTCTGACAATT 59.115 45.455 0.00 0.00 38.61 2.32
608 1542 5.449304 CGTGGGTCTTTTCTGACAATTTAC 58.551 41.667 0.00 0.00 38.61 2.01
646 1580 3.453222 TGCAAGAAATTCGCACACG 57.547 47.368 0.00 0.00 42.01 4.49
681 1615 4.949856 AGTTGCCGTTGATTATCTTCCAAT 59.050 37.500 0.00 0.00 0.00 3.16
747 1683 2.887152 ACTGCTCCTTTCGCTTTCAATT 59.113 40.909 0.00 0.00 0.00 2.32
748 1684 4.072131 ACTGCTCCTTTCGCTTTCAATTA 58.928 39.130 0.00 0.00 0.00 1.40
749 1685 4.702131 ACTGCTCCTTTCGCTTTCAATTAT 59.298 37.500 0.00 0.00 0.00 1.28
794 1730 3.854045 GCCGTTTTACCGAATCAAAAGCA 60.854 43.478 0.00 0.00 0.00 3.91
822 1765 2.698797 GTGATCCTCCTCCGATGGTTTA 59.301 50.000 0.00 0.00 0.00 2.01
823 1766 3.325135 GTGATCCTCCTCCGATGGTTTAT 59.675 47.826 0.00 0.00 0.00 1.40
824 1767 3.324846 TGATCCTCCTCCGATGGTTTATG 59.675 47.826 0.00 0.00 0.00 1.90
825 1768 2.047061 TCCTCCTCCGATGGTTTATGG 58.953 52.381 0.00 0.00 0.00 2.74
841 1784 5.336451 GGTTTATGGGTGGAAACAAGATCAC 60.336 44.000 0.00 0.00 46.06 3.06
858 1801 3.607422 TCACAAACTTGATGCAGAACG 57.393 42.857 0.00 0.00 0.00 3.95
860 1803 1.001378 ACAAACTTGATGCAGAACGGC 60.001 47.619 0.00 0.00 0.00 5.68
889 1832 8.279970 TGCAGAGCACTTTTGTATGTAATATT 57.720 30.769 0.00 0.00 31.71 1.28
944 2012 2.024273 ACCGACCTCTTCCATTCCTCTA 60.024 50.000 0.00 0.00 0.00 2.43
945 2013 3.235200 CCGACCTCTTCCATTCCTCTAT 58.765 50.000 0.00 0.00 0.00 1.98
950 2018 3.007831 CCTCTTCCATTCCTCTATGCCTC 59.992 52.174 0.00 0.00 0.00 4.70
957 2025 7.872061 TCCATTCCTCTATGCCTCTATAAAA 57.128 36.000 0.00 0.00 0.00 1.52
958 2026 8.454859 TCCATTCCTCTATGCCTCTATAAAAT 57.545 34.615 0.00 0.00 0.00 1.82
973 2041 2.119801 AAAATCAGCCGTGCATCTCT 57.880 45.000 0.00 0.00 0.00 3.10
987 2055 2.543445 GCATCTCTGAGACGACCATCTG 60.543 54.545 10.00 3.00 0.00 2.90
1134 2214 1.966901 TTGACAGCACCACCGACACT 61.967 55.000 0.00 0.00 0.00 3.55
1140 2220 1.140252 AGCACCACCGACACTTTTAGT 59.860 47.619 0.00 0.00 0.00 2.24
1161 2241 3.923614 CGTAGCATAGCCGAGCAC 58.076 61.111 0.00 0.00 0.00 4.40
1162 2242 2.011349 CGTAGCATAGCCGAGCACG 61.011 63.158 0.00 0.00 39.43 5.34
1287 2367 2.672651 TTCGACCAGTACGGCGGA 60.673 61.111 13.24 0.00 39.03 5.54
1349 2429 0.813184 TACCTCGTCGAATCGCCTTT 59.187 50.000 0.00 0.00 0.00 3.11
1399 2494 2.093658 TGGCTCAACGGAGGTTAGAATC 60.094 50.000 0.00 0.00 41.67 2.52
1424 2578 4.258543 ACATACGTTGACATAAACCTGGG 58.741 43.478 0.00 0.00 0.00 4.45
1473 2627 4.918810 AATATGGTTTCTTCATTCGGCC 57.081 40.909 0.00 0.00 0.00 6.13
1484 2638 2.975266 TCATTCGGCCGCTTTAGTTTA 58.025 42.857 23.51 0.00 0.00 2.01
1511 2669 1.003839 TAGTTGAGCCCCTGTTGCG 60.004 57.895 0.00 0.00 0.00 4.85
1578 2736 2.665052 CAGTCTACGTAGAAAAACCGGC 59.335 50.000 26.21 11.60 33.47 6.13
1649 2824 3.709633 GGTTAGGGACCGCCGGTT 61.710 66.667 11.54 0.00 39.00 4.44
1650 2825 2.435410 GTTAGGGACCGCCGGTTG 60.435 66.667 11.54 0.00 35.25 3.77
1651 2826 4.397832 TTAGGGACCGCCGGTTGC 62.398 66.667 11.54 0.00 35.25 4.17
1897 3072 1.351080 CCCAGATGCTCCATCCCACT 61.351 60.000 1.82 0.00 41.36 4.00
1899 3074 1.071385 CCAGATGCTCCATCCCACTAC 59.929 57.143 1.82 0.00 41.36 2.73
1900 3075 1.071385 CAGATGCTCCATCCCACTACC 59.929 57.143 1.82 0.00 41.36 3.18
1901 3076 1.061812 AGATGCTCCATCCCACTACCT 60.062 52.381 1.82 0.00 41.36 3.08
2019 3207 6.016777 CAGTTGAGAAGCTGTACCAATTTCTT 60.017 38.462 0.00 0.00 0.00 2.52
2575 3779 6.566753 GCTTAAGTTGACAACTGAACATCTCC 60.567 42.308 21.24 0.96 41.91 3.71
2601 3819 5.347907 GTGGAAAATTCTCAGTACGTAGTGG 59.652 44.000 26.11 17.91 45.73 4.00
2765 4082 5.043356 ACAGGCTAATAATTCCTTCCCCTTT 60.043 40.000 0.00 0.00 0.00 3.11
2767 4084 7.066781 CAGGCTAATAATTCCTTCCCCTTTAA 58.933 38.462 0.00 0.00 0.00 1.52
2768 4085 7.730332 CAGGCTAATAATTCCTTCCCCTTTAAT 59.270 37.037 0.00 0.00 0.00 1.40
2770 4087 8.934697 GGCTAATAATTCCTTCCCCTTTAATTT 58.065 33.333 0.00 0.00 0.00 1.82
2771 4088 9.764363 GCTAATAATTCCTTCCCCTTTAATTTG 57.236 33.333 0.00 0.00 0.00 2.32
2774 4091 6.620877 AATTCCTTCCCCTTTAATTTGGTC 57.379 37.500 0.00 0.00 0.00 4.02
2776 4093 3.665618 TCCTTCCCCTTTAATTTGGTCCT 59.334 43.478 0.00 0.00 0.00 3.85
2777 4094 3.769300 CCTTCCCCTTTAATTTGGTCCTG 59.231 47.826 0.00 0.00 0.00 3.86
2778 4095 2.815158 TCCCCTTTAATTTGGTCCTGC 58.185 47.619 0.00 0.00 0.00 4.85
2779 4096 2.381961 TCCCCTTTAATTTGGTCCTGCT 59.618 45.455 0.00 0.00 0.00 4.24
2780 4097 3.173151 CCCCTTTAATTTGGTCCTGCTT 58.827 45.455 0.00 0.00 0.00 3.91
2781 4098 4.044825 TCCCCTTTAATTTGGTCCTGCTTA 59.955 41.667 0.00 0.00 0.00 3.09
2782 4099 4.775253 CCCCTTTAATTTGGTCCTGCTTAA 59.225 41.667 0.00 0.00 0.00 1.85
2845 4172 0.254178 AGCGGCCAACATGATCTTCT 59.746 50.000 2.24 0.00 0.00 2.85
2948 4275 3.070060 CGCGTACGTCTTTCTGCC 58.930 61.111 17.90 0.00 33.53 4.85
3117 4444 5.448632 GGGCATCTTGGTACGTGAAATTTAG 60.449 44.000 0.00 0.00 0.00 1.85
3165 4513 4.492409 CGTATGAACACATGGTGAATGACG 60.492 45.833 2.98 3.03 38.72 4.35
3401 6968 2.503920 ACAACATATACGCTCCCGTC 57.496 50.000 0.00 0.00 46.39 4.79
3453 7020 2.289819 CCCAGTGGCTACGTAAGGAAAA 60.290 50.000 2.61 0.00 46.39 2.29
3454 7021 3.404899 CCAGTGGCTACGTAAGGAAAAA 58.595 45.455 0.00 0.00 46.39 1.94
3455 7022 3.435671 CCAGTGGCTACGTAAGGAAAAAG 59.564 47.826 0.00 0.00 46.39 2.27
3463 7044 7.879160 TGGCTACGTAAGGAAAAAGAAATTCTA 59.121 33.333 0.00 0.00 46.39 2.10
3491 7079 4.672409 CTTGTCCAGTCAAAAGTGAAACC 58.328 43.478 0.00 0.00 37.80 3.27
3511 7810 7.449395 TGAAACCAGTGATCATCTTCTGAATTT 59.551 33.333 11.56 10.90 37.44 1.82
3512 7811 6.754702 ACCAGTGATCATCTTCTGAATTTG 57.245 37.500 11.56 0.00 37.44 2.32
3514 7813 6.150641 ACCAGTGATCATCTTCTGAATTTGTG 59.849 38.462 11.56 0.00 37.44 3.33
3517 7816 6.373774 AGTGATCATCTTCTGAATTTGTGACC 59.626 38.462 0.00 0.00 37.44 4.02
3521 7820 3.057019 TCTTCTGAATTTGTGACCGTCG 58.943 45.455 0.00 0.00 0.00 5.12
3603 7902 2.666317 TGCCTATCTCAACGATCCAGA 58.334 47.619 0.00 0.00 33.48 3.86
3611 7910 0.036952 CAACGATCCAGAGGTGCAGT 60.037 55.000 0.00 0.00 0.00 4.40
3699 8520 0.441145 GCGTACACCGGTCAACAATC 59.559 55.000 2.59 0.00 36.94 2.67
3711 8532 4.507388 CGGTCAACAATCTTGCAATGTTTT 59.493 37.500 12.98 0.00 35.22 2.43
4052 9066 2.548920 GGAGGTGAATCCCATCATCGAC 60.549 54.545 0.00 0.00 35.54 4.20
4071 9131 8.131731 TCATCGACAACATTTCTCATCTACTAG 58.868 37.037 0.00 0.00 0.00 2.57
4072 9132 7.392494 TCGACAACATTTCTCATCTACTAGT 57.608 36.000 0.00 0.00 0.00 2.57
4073 9133 8.502105 TCGACAACATTTCTCATCTACTAGTA 57.498 34.615 1.89 1.89 0.00 1.82
4089 9149 7.156673 TCTACTAGTACAATGTTTTGGTCACC 58.843 38.462 0.00 0.00 37.15 4.02
4090 9150 5.067954 ACTAGTACAATGTTTTGGTCACCC 58.932 41.667 0.00 0.00 37.15 4.61
4091 9151 4.178956 AGTACAATGTTTTGGTCACCCT 57.821 40.909 0.00 0.00 37.15 4.34
4092 9152 3.888930 AGTACAATGTTTTGGTCACCCTG 59.111 43.478 0.00 0.00 37.15 4.45
4093 9153 3.025322 ACAATGTTTTGGTCACCCTGA 57.975 42.857 0.00 0.00 37.15 3.86
4094 9154 2.958355 ACAATGTTTTGGTCACCCTGAG 59.042 45.455 0.00 0.00 37.15 3.35
4113 9173 1.149148 GCCTGAAACTGACGACTTCC 58.851 55.000 0.00 0.00 0.00 3.46
4121 9181 0.389166 CTGACGACTTCCCTCACTGC 60.389 60.000 0.00 0.00 0.00 4.40
4616 9683 0.473694 TGGGCCTTTCTCTCTGGTCA 60.474 55.000 4.53 0.00 0.00 4.02
4698 9767 3.393970 CCTCCGGCCTCTTCTGCA 61.394 66.667 0.00 0.00 0.00 4.41
4699 9768 2.665000 CTCCGGCCTCTTCTGCAA 59.335 61.111 0.00 0.00 0.00 4.08
4798 9883 3.857038 GCGGTGGATCGGGGCTTA 61.857 66.667 0.00 0.00 0.00 3.09
4817 9902 2.787473 ATTTTGCTCGGATCTGGTGA 57.213 45.000 0.62 0.00 0.00 4.02
4986 10078 2.818274 GTCGTCGGAATGGTGGCC 60.818 66.667 0.00 0.00 0.00 5.36
5174 10267 2.047655 CCGGCGTTGGCTTGTCTA 60.048 61.111 6.01 0.00 39.81 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.939760 TATGGTGAGTCCGCCCCGAT 62.940 60.000 0.00 0.00 42.26 4.18
1 2 3.665515 TATGGTGAGTCCGCCCCGA 62.666 63.158 0.00 0.00 42.26 5.14
2 3 2.644555 CTTATGGTGAGTCCGCCCCG 62.645 65.000 0.00 0.00 42.26 5.73
3 4 1.146263 CTTATGGTGAGTCCGCCCC 59.854 63.158 0.00 0.00 42.26 5.80
4 5 1.117150 TACTTATGGTGAGTCCGCCC 58.883 55.000 0.00 0.00 42.26 6.13
5 6 3.131396 CAATACTTATGGTGAGTCCGCC 58.869 50.000 0.00 0.00 43.22 6.13
6 7 2.544267 GCAATACTTATGGTGAGTCCGC 59.456 50.000 0.00 0.00 39.52 5.54
7 8 3.131396 GGCAATACTTATGGTGAGTCCG 58.869 50.000 0.00 0.00 39.52 4.79
8 9 3.477530 GGGCAATACTTATGGTGAGTCC 58.522 50.000 0.00 0.00 0.00 3.85
10 11 2.745152 GCGGGCAATACTTATGGTGAGT 60.745 50.000 0.00 0.00 0.00 3.41
11 12 1.873591 GCGGGCAATACTTATGGTGAG 59.126 52.381 0.00 0.00 0.00 3.51
12 13 1.210722 TGCGGGCAATACTTATGGTGA 59.789 47.619 0.00 0.00 0.00 4.02
13 14 1.674359 TGCGGGCAATACTTATGGTG 58.326 50.000 0.00 0.00 0.00 4.17
14 15 2.428544 TTGCGGGCAATACTTATGGT 57.571 45.000 1.21 0.00 0.00 3.55
15 16 5.446143 TTAATTGCGGGCAATACTTATGG 57.554 39.130 18.29 0.00 44.86 2.74
16 17 6.913170 AGATTAATTGCGGGCAATACTTATG 58.087 36.000 18.29 0.00 44.86 1.90
17 18 6.151144 GGAGATTAATTGCGGGCAATACTTAT 59.849 38.462 18.29 9.80 44.86 1.73
18 19 5.472137 GGAGATTAATTGCGGGCAATACTTA 59.528 40.000 18.29 6.58 44.86 2.24
19 20 4.278419 GGAGATTAATTGCGGGCAATACTT 59.722 41.667 18.29 7.51 44.86 2.24
20 21 3.821033 GGAGATTAATTGCGGGCAATACT 59.179 43.478 18.29 14.42 44.86 2.12
21 22 3.057526 GGGAGATTAATTGCGGGCAATAC 60.058 47.826 18.29 10.68 44.86 1.89
22 23 3.153919 GGGAGATTAATTGCGGGCAATA 58.846 45.455 18.29 5.41 44.86 1.90
24 25 1.341482 TGGGAGATTAATTGCGGGCAA 60.341 47.619 8.72 8.72 40.47 4.52
25 26 0.257328 TGGGAGATTAATTGCGGGCA 59.743 50.000 0.00 0.00 0.00 5.36
26 27 0.668535 GTGGGAGATTAATTGCGGGC 59.331 55.000 0.00 0.00 0.00 6.13
27 28 1.318576 GGTGGGAGATTAATTGCGGG 58.681 55.000 0.00 0.00 0.00 6.13
29 30 0.944386 CCGGTGGGAGATTAATTGCG 59.056 55.000 0.00 0.00 34.06 4.85
30 31 1.947456 GACCGGTGGGAGATTAATTGC 59.053 52.381 14.63 0.00 36.97 3.56
31 32 2.210116 CGACCGGTGGGAGATTAATTG 58.790 52.381 14.63 0.00 36.97 2.32
32 33 1.474498 GCGACCGGTGGGAGATTAATT 60.474 52.381 14.63 0.00 36.97 1.40
33 34 0.106149 GCGACCGGTGGGAGATTAAT 59.894 55.000 14.63 0.00 36.97 1.40
34 35 1.259142 TGCGACCGGTGGGAGATTAA 61.259 55.000 14.63 0.00 36.97 1.40
36 37 1.910580 ATTGCGACCGGTGGGAGATT 61.911 55.000 14.63 0.00 36.97 2.40
37 38 1.910580 AATTGCGACCGGTGGGAGAT 61.911 55.000 14.63 5.88 36.97 2.75
38 39 2.515996 GAATTGCGACCGGTGGGAGA 62.516 60.000 14.63 3.38 36.97 3.71
39 40 2.046314 AATTGCGACCGGTGGGAG 60.046 61.111 14.63 0.94 36.97 4.30
40 41 2.046700 GAATTGCGACCGGTGGGA 60.047 61.111 14.63 10.22 36.97 4.37
41 42 3.131478 GGAATTGCGACCGGTGGG 61.131 66.667 14.63 4.46 40.11 4.61
42 43 2.046314 AGGAATTGCGACCGGTGG 60.046 61.111 14.63 13.66 0.00 4.61
43 44 1.079127 AGAGGAATTGCGACCGGTG 60.079 57.895 14.63 5.62 0.00 4.94
44 45 1.218316 GAGAGGAATTGCGACCGGT 59.782 57.895 6.92 6.92 0.00 5.28
45 46 1.521681 GGAGAGGAATTGCGACCGG 60.522 63.158 0.00 0.00 0.00 5.28
46 47 1.521681 GGGAGAGGAATTGCGACCG 60.522 63.158 0.00 0.00 0.00 4.79
48 49 0.744771 GGTGGGAGAGGAATTGCGAC 60.745 60.000 0.00 0.00 0.00 5.19
49 50 1.198094 TGGTGGGAGAGGAATTGCGA 61.198 55.000 0.00 0.00 0.00 5.10
50 51 0.745845 CTGGTGGGAGAGGAATTGCG 60.746 60.000 0.00 0.00 0.00 4.85
51 52 0.329596 ACTGGTGGGAGAGGAATTGC 59.670 55.000 0.00 0.00 0.00 3.56
52 53 1.406069 CGACTGGTGGGAGAGGAATTG 60.406 57.143 0.00 0.00 0.00 2.32
55 56 2.283529 GCGACTGGTGGGAGAGGAA 61.284 63.158 0.00 0.00 0.00 3.36
57 58 2.997315 TGCGACTGGTGGGAGAGG 60.997 66.667 0.00 0.00 0.00 3.69
59 60 1.407656 AAACTGCGACTGGTGGGAGA 61.408 55.000 10.63 0.00 31.67 3.71
61 62 1.070786 GAAACTGCGACTGGTGGGA 59.929 57.895 0.00 0.00 0.00 4.37
63 64 0.951040 GGAGAAACTGCGACTGGTGG 60.951 60.000 0.00 0.00 0.00 4.61
64 65 0.951040 GGGAGAAACTGCGACTGGTG 60.951 60.000 0.00 0.00 0.00 4.17
65 66 1.122019 AGGGAGAAACTGCGACTGGT 61.122 55.000 0.00 0.00 0.00 4.00
66 67 0.390472 GAGGGAGAAACTGCGACTGG 60.390 60.000 0.00 0.00 0.00 4.00
67 68 0.734253 CGAGGGAGAAACTGCGACTG 60.734 60.000 0.00 0.00 0.00 3.51
68 69 1.587054 CGAGGGAGAAACTGCGACT 59.413 57.895 0.00 0.00 0.00 4.18
69 70 2.095252 GCGAGGGAGAAACTGCGAC 61.095 63.158 0.00 0.00 0.00 5.19
70 71 2.261671 GCGAGGGAGAAACTGCGA 59.738 61.111 0.00 0.00 0.00 5.10
71 72 2.815647 GGCGAGGGAGAAACTGCG 60.816 66.667 0.00 0.00 0.00 5.18
72 73 2.815647 CGGCGAGGGAGAAACTGC 60.816 66.667 0.00 0.00 0.00 4.40
73 74 2.125512 CCGGCGAGGGAGAAACTG 60.126 66.667 9.30 0.00 35.97 3.16
74 75 4.083862 GCCGGCGAGGGAGAAACT 62.084 66.667 12.58 0.00 41.48 2.66
75 76 4.083862 AGCCGGCGAGGGAGAAAC 62.084 66.667 23.20 0.00 41.48 2.78
76 77 3.771160 GAGCCGGCGAGGGAGAAA 61.771 66.667 23.20 0.00 41.48 2.52
106 107 4.888325 AGGAGATCCAGGGCGGGG 62.888 72.222 0.92 0.00 38.89 5.73
107 108 3.237741 GAGGAGATCCAGGGCGGG 61.238 72.222 0.92 0.00 38.89 6.13
116 117 1.080839 GCGCATCGAGGAGGAGATC 60.081 63.158 0.30 0.00 0.00 2.75
128 129 3.571959 TTGTCACGTTGCGCGCATC 62.572 57.895 36.83 31.77 46.11 3.91
130 131 4.292208 CTTGTCACGTTGCGCGCA 62.292 61.111 33.09 33.09 46.11 6.09
133 134 2.539338 TTCCCTTGTCACGTTGCGC 61.539 57.895 0.00 0.00 0.00 6.09
134 135 1.278637 GTTCCCTTGTCACGTTGCG 59.721 57.895 0.00 0.00 0.00 4.85
135 136 1.652563 GGTTCCCTTGTCACGTTGC 59.347 57.895 0.00 0.00 0.00 4.17
136 137 1.503818 CGGGTTCCCTTGTCACGTTG 61.504 60.000 6.31 0.00 0.00 4.10
139 140 0.321298 AATCGGGTTCCCTTGTCACG 60.321 55.000 6.31 0.00 0.00 4.35
140 141 1.165270 CAATCGGGTTCCCTTGTCAC 58.835 55.000 6.31 0.00 0.00 3.67
141 142 0.768622 ACAATCGGGTTCCCTTGTCA 59.231 50.000 8.95 0.00 0.00 3.58
143 144 0.251165 CCACAATCGGGTTCCCTTGT 60.251 55.000 8.95 8.95 32.27 3.16
144 145 0.251165 ACCACAATCGGGTTCCCTTG 60.251 55.000 6.31 7.22 34.10 3.61
145 146 0.481128 AACCACAATCGGGTTCCCTT 59.519 50.000 6.31 0.00 45.26 3.95
147 148 4.834911 AACCACAATCGGGTTCCC 57.165 55.556 0.00 0.00 45.26 3.97
151 152 2.349755 CCGGAACCACAATCGGGT 59.650 61.111 0.00 0.00 41.41 5.28
153 154 2.437716 CCCCGGAACCACAATCGG 60.438 66.667 0.73 0.00 41.90 4.18
154 155 2.437716 CCCCCGGAACCACAATCG 60.438 66.667 0.73 0.00 0.00 3.34
155 156 2.754254 GCCCCCGGAACCACAATC 60.754 66.667 0.73 0.00 0.00 2.67
172 173 4.410400 GGAGGGGGCTCGTGTTGG 62.410 72.222 0.00 0.00 0.00 3.77
174 175 2.741878 TACAGGAGGGGGCTCGTGTT 62.742 60.000 3.45 0.00 46.24 3.32
175 176 4.640690 ACAGGAGGGGGCTCGTGT 62.641 66.667 0.00 0.00 44.44 4.49
176 177 2.363795 TACAGGAGGGGGCTCGTG 60.364 66.667 0.00 0.00 42.76 4.35
177 178 2.363925 GTACAGGAGGGGGCTCGT 60.364 66.667 0.00 0.00 0.00 4.18
179 180 3.155167 CGGTACAGGAGGGGGCTC 61.155 72.222 0.00 0.00 0.00 4.70
182 183 4.798682 AGGCGGTACAGGAGGGGG 62.799 72.222 0.00 0.00 0.00 5.40
184 185 2.683933 ACAGGCGGTACAGGAGGG 60.684 66.667 0.00 0.00 0.00 4.30
186 187 2.893398 GGACAGGCGGTACAGGAG 59.107 66.667 0.00 0.00 0.00 3.69
188 189 4.814294 GCGGACAGGCGGTACAGG 62.814 72.222 0.00 0.00 0.00 4.00
196 197 2.585247 GATGTACGGCGGACAGGC 60.585 66.667 30.31 20.29 42.76 4.85
197 198 2.106332 GGATGTACGGCGGACAGG 59.894 66.667 30.31 0.00 0.00 4.00
198 199 2.106332 GGGATGTACGGCGGACAG 59.894 66.667 30.31 0.00 0.00 3.51
200 201 4.580551 CGGGGATGTACGGCGGAC 62.581 72.222 17.03 17.03 0.00 4.79
204 205 4.944372 CGAGCGGGGATGTACGGC 62.944 72.222 0.00 0.00 34.78 5.68
206 207 2.025727 GACGAGCGGGGATGTACG 59.974 66.667 0.00 0.00 0.00 3.67
207 208 2.025727 CGACGAGCGGGGATGTAC 59.974 66.667 0.00 0.00 36.03 2.90
208 209 2.124612 TCGACGAGCGGGGATGTA 60.125 61.111 0.00 0.00 41.33 2.29
210 211 4.907034 CGTCGACGAGCGGGGATG 62.907 72.222 33.35 0.00 43.02 3.51
227 228 3.384014 CTCAGCGACGGTCGACCTC 62.384 68.421 32.48 23.90 43.74 3.85
228 229 3.432588 CTCAGCGACGGTCGACCT 61.433 66.667 32.48 18.42 43.74 3.85
229 230 3.664223 GACTCAGCGACGGTCGACC 62.664 68.421 32.48 25.28 43.74 4.79
230 231 2.202324 GACTCAGCGACGGTCGAC 60.202 66.667 32.48 22.41 43.74 4.20
233 234 4.477975 CCGGACTCAGCGACGGTC 62.478 72.222 0.00 0.00 41.34 4.79
241 242 4.020617 TGCTTGGCCCGGACTCAG 62.021 66.667 0.73 0.00 0.00 3.35
242 243 4.329545 GTGCTTGGCCCGGACTCA 62.330 66.667 0.73 0.00 0.00 3.41
245 246 4.778143 ATCGTGCTTGGCCCGGAC 62.778 66.667 0.73 1.37 0.00 4.79
246 247 4.467084 GATCGTGCTTGGCCCGGA 62.467 66.667 0.73 0.00 0.00 5.14
247 248 4.776322 TGATCGTGCTTGGCCCGG 62.776 66.667 0.00 0.00 0.00 5.73
248 249 3.499737 GTGATCGTGCTTGGCCCG 61.500 66.667 0.00 0.00 0.00 6.13
249 250 3.134127 GGTGATCGTGCTTGGCCC 61.134 66.667 0.00 0.00 0.00 5.80
251 252 3.134127 GGGGTGATCGTGCTTGGC 61.134 66.667 0.00 0.00 0.00 4.52
252 253 2.819595 CGGGGTGATCGTGCTTGG 60.820 66.667 0.00 0.00 0.00 3.61
253 254 3.499737 GCGGGGTGATCGTGCTTG 61.500 66.667 0.00 0.00 0.00 4.01
265 266 3.426117 CTACAGCTACACCGCGGGG 62.426 68.421 29.60 29.60 40.11 5.73
266 267 2.104331 CTACAGCTACACCGCGGG 59.896 66.667 31.76 20.69 34.40 6.13
267 268 2.104331 CCTACAGCTACACCGCGG 59.896 66.667 26.86 26.86 34.40 6.46
269 270 2.202892 GCCCTACAGCTACACCGC 60.203 66.667 0.00 0.00 0.00 5.68
270 271 2.499685 GGCCCTACAGCTACACCG 59.500 66.667 0.00 0.00 0.00 4.94
271 272 2.499685 CGGCCCTACAGCTACACC 59.500 66.667 0.00 0.00 0.00 4.16
272 273 2.202892 GCGGCCCTACAGCTACAC 60.203 66.667 0.00 0.00 36.43 2.90
273 274 3.467226 GGCGGCCCTACAGCTACA 61.467 66.667 8.12 0.00 39.71 2.74
274 275 4.587189 CGGCGGCCCTACAGCTAC 62.587 72.222 14.55 0.00 39.71 3.58
278 279 1.952102 TAAAGACGGCGGCCCTACAG 61.952 60.000 10.28 0.78 0.00 2.74
279 280 1.952102 CTAAAGACGGCGGCCCTACA 61.952 60.000 10.28 0.00 0.00 2.74
280 281 1.227176 CTAAAGACGGCGGCCCTAC 60.227 63.158 10.28 5.04 0.00 3.18
281 282 0.757935 ATCTAAAGACGGCGGCCCTA 60.758 55.000 10.28 0.00 0.00 3.53
282 283 1.623542 AATCTAAAGACGGCGGCCCT 61.624 55.000 10.28 0.69 0.00 5.19
283 284 1.153229 AATCTAAAGACGGCGGCCC 60.153 57.895 10.28 0.00 0.00 5.80
285 286 2.014594 CCAATCTAAAGACGGCGGC 58.985 57.895 13.24 8.92 0.00 6.53
286 287 2.014594 GCCAATCTAAAGACGGCGG 58.985 57.895 13.24 0.00 36.58 6.13
288 289 2.014594 CCGCCAATCTAAAGACGGC 58.985 57.895 10.80 10.80 40.63 5.68
290 291 0.804544 TCGCCGCCAATCTAAAGACG 60.805 55.000 0.00 0.00 0.00 4.18
291 292 1.062148 GTTCGCCGCCAATCTAAAGAC 59.938 52.381 0.00 0.00 0.00 3.01
293 294 0.377203 GGTTCGCCGCCAATCTAAAG 59.623 55.000 0.00 0.00 0.00 1.85
294 295 0.321741 TGGTTCGCCGCCAATCTAAA 60.322 50.000 0.00 0.00 41.18 1.85
296 297 1.448893 GTGGTTCGCCGCCAATCTA 60.449 57.895 0.00 0.00 41.81 1.98
298 299 4.160635 CGTGGTTCGCCGCCAATC 62.161 66.667 0.00 0.00 44.69 2.67
353 354 2.432628 CCGACACGTCTCCTTGGC 60.433 66.667 0.00 0.00 0.00 4.52
355 356 1.442184 CGTCCGACACGTCTCCTTG 60.442 63.158 0.00 0.00 44.07 3.61
356 357 2.952245 CGTCCGACACGTCTCCTT 59.048 61.111 0.00 0.00 44.07 3.36
364 365 1.868251 GAGATGACGCGTCCGACAC 60.868 63.158 34.34 19.66 41.44 3.67
366 367 2.278013 GGAGATGACGCGTCCGAC 60.278 66.667 34.34 24.02 38.29 4.79
368 369 2.579787 GTGGAGATGACGCGTCCG 60.580 66.667 34.34 0.00 41.14 4.79
369 370 2.202756 GGTGGAGATGACGCGTCC 60.203 66.667 34.34 20.94 0.00 4.79
372 373 1.519455 GGAAGGTGGAGATGACGCG 60.519 63.158 3.53 3.53 0.00 6.01
373 374 0.460987 CTGGAAGGTGGAGATGACGC 60.461 60.000 0.00 0.00 0.00 5.19
374 375 1.134965 GTCTGGAAGGTGGAGATGACG 60.135 57.143 0.00 0.00 0.00 4.35
377 378 1.279496 TGGTCTGGAAGGTGGAGATG 58.721 55.000 0.00 0.00 0.00 2.90
378 379 2.040412 GTTTGGTCTGGAAGGTGGAGAT 59.960 50.000 0.00 0.00 0.00 2.75
379 380 1.420138 GTTTGGTCTGGAAGGTGGAGA 59.580 52.381 0.00 0.00 0.00 3.71
380 381 1.421646 AGTTTGGTCTGGAAGGTGGAG 59.578 52.381 0.00 0.00 0.00 3.86
381 382 1.420138 GAGTTTGGTCTGGAAGGTGGA 59.580 52.381 0.00 0.00 0.00 4.02
382 383 1.142870 TGAGTTTGGTCTGGAAGGTGG 59.857 52.381 0.00 0.00 0.00 4.61
385 386 4.122776 CGATATGAGTTTGGTCTGGAAGG 58.877 47.826 0.00 0.00 0.00 3.46
386 387 4.759782 ACGATATGAGTTTGGTCTGGAAG 58.240 43.478 0.00 0.00 0.00 3.46
387 388 4.819105 ACGATATGAGTTTGGTCTGGAA 57.181 40.909 0.00 0.00 0.00 3.53
388 389 6.479972 AATACGATATGAGTTTGGTCTGGA 57.520 37.500 0.00 0.00 0.00 3.86
406 407 8.353653 CGTACGTACATGCTCTAAATAAATACG 58.646 37.037 24.50 3.24 38.95 3.06
408 409 9.949174 TTCGTACGTACATGCTCTAAATAAATA 57.051 29.630 24.50 0.00 0.00 1.40
409 410 8.861033 TTCGTACGTACATGCTCTAAATAAAT 57.139 30.769 24.50 0.00 0.00 1.40
410 411 8.686397 TTTCGTACGTACATGCTCTAAATAAA 57.314 30.769 24.50 0.00 0.00 1.40
412 413 8.183536 TCTTTTCGTACGTACATGCTCTAAATA 58.816 33.333 24.50 4.90 0.00 1.40
414 415 6.380995 TCTTTTCGTACGTACATGCTCTAAA 58.619 36.000 24.50 11.73 0.00 1.85
415 416 5.941733 TCTTTTCGTACGTACATGCTCTAA 58.058 37.500 24.50 8.00 0.00 2.10
416 417 5.550232 TCTTTTCGTACGTACATGCTCTA 57.450 39.130 24.50 2.39 0.00 2.43
417 418 4.413087 CTCTTTTCGTACGTACATGCTCT 58.587 43.478 24.50 0.00 0.00 4.09
418 419 3.000971 GCTCTTTTCGTACGTACATGCTC 60.001 47.826 24.50 0.00 0.00 4.26
420 421 2.664568 TGCTCTTTTCGTACGTACATGC 59.335 45.455 24.50 15.87 0.00 4.06
421 422 5.450376 AATGCTCTTTTCGTACGTACATG 57.550 39.130 24.50 10.12 0.00 3.21
423 424 4.983538 TCAAATGCTCTTTTCGTACGTACA 59.016 37.500 24.50 9.77 0.00 2.90
424 425 5.118203 ACTCAAATGCTCTTTTCGTACGTAC 59.882 40.000 15.90 15.90 0.00 3.67
425 426 5.224888 ACTCAAATGCTCTTTTCGTACGTA 58.775 37.500 16.05 1.99 0.00 3.57
426 427 4.056050 ACTCAAATGCTCTTTTCGTACGT 58.944 39.130 16.05 0.00 0.00 3.57
427 428 4.647291 ACTCAAATGCTCTTTTCGTACG 57.353 40.909 9.53 9.53 0.00 3.67
428 429 6.691388 ACAAAACTCAAATGCTCTTTTCGTAC 59.309 34.615 0.00 0.00 0.00 3.67
429 430 6.690957 CACAAAACTCAAATGCTCTTTTCGTA 59.309 34.615 0.00 0.00 0.00 3.43
432 433 7.394099 GTTCACAAAACTCAAATGCTCTTTTC 58.606 34.615 0.00 0.00 0.00 2.29
433 434 6.313658 GGTTCACAAAACTCAAATGCTCTTTT 59.686 34.615 0.00 0.00 0.00 2.27
435 436 5.351458 GGTTCACAAAACTCAAATGCTCTT 58.649 37.500 0.00 0.00 0.00 2.85
436 437 4.202151 GGGTTCACAAAACTCAAATGCTCT 60.202 41.667 0.00 0.00 0.00 4.09
437 438 4.051237 GGGTTCACAAAACTCAAATGCTC 58.949 43.478 0.00 0.00 0.00 4.26
439 440 2.794350 CGGGTTCACAAAACTCAAATGC 59.206 45.455 0.00 0.00 0.00 3.56
441 442 3.951680 AGTCGGGTTCACAAAACTCAAAT 59.048 39.130 0.00 0.00 0.00 2.32
442 443 3.349022 AGTCGGGTTCACAAAACTCAAA 58.651 40.909 0.00 0.00 0.00 2.69
443 444 2.940410 GAGTCGGGTTCACAAAACTCAA 59.060 45.455 0.00 0.00 34.64 3.02
444 445 2.093394 TGAGTCGGGTTCACAAAACTCA 60.093 45.455 0.00 0.00 40.42 3.41
445 446 2.557317 TGAGTCGGGTTCACAAAACTC 58.443 47.619 0.00 0.00 34.98 3.01
446 447 2.702592 TGAGTCGGGTTCACAAAACT 57.297 45.000 0.00 0.00 0.00 2.66
447 448 2.096417 CGATGAGTCGGGTTCACAAAAC 60.096 50.000 0.00 0.00 44.00 2.43
448 449 2.139917 CGATGAGTCGGGTTCACAAAA 58.860 47.619 0.00 0.00 44.00 2.44
449 450 1.790755 CGATGAGTCGGGTTCACAAA 58.209 50.000 0.00 0.00 44.00 2.83
450 451 3.507597 CGATGAGTCGGGTTCACAA 57.492 52.632 0.00 0.00 44.00 3.33
488 1422 2.809696 GCATCTACTCGAGAGGGAGTAC 59.190 54.545 21.68 4.22 45.14 2.73
504 1438 6.402222 CACTTCTAGAGTTTTAGTGGCATCT 58.598 40.000 12.01 0.00 36.10 2.90
515 1449 5.929415 GCTTACTTCAGCACTTCTAGAGTTT 59.071 40.000 0.00 0.00 39.83 2.66
543 1477 4.429108 CCCACACGTGAACAATTTTCTTT 58.571 39.130 25.01 0.00 0.00 2.52
551 1485 0.453793 CAAAGCCCACACGTGAACAA 59.546 50.000 25.01 0.00 0.00 2.83
579 1513 2.032071 AAAAGACCCACGGCGAGG 59.968 61.111 16.62 16.75 0.00 4.63
605 1539 0.961857 TAGACCACCTGCGCGAGTAA 60.962 55.000 12.10 0.00 0.00 2.24
608 1542 2.202623 GTAGACCACCTGCGCGAG 60.203 66.667 12.10 4.18 0.00 5.03
646 1580 0.175073 CGGCAACTCCTGTACCTACC 59.825 60.000 0.00 0.00 0.00 3.18
681 1615 4.272504 CACTTCCTTGTTTTAGTCGCTGAA 59.727 41.667 0.00 0.00 0.00 3.02
747 1683 7.577426 GCCTTGATTTGTTGAATTGACAGGATA 60.577 37.037 0.00 0.00 0.00 2.59
748 1684 6.694447 CCTTGATTTGTTGAATTGACAGGAT 58.306 36.000 0.00 0.00 0.00 3.24
749 1685 5.509501 GCCTTGATTTGTTGAATTGACAGGA 60.510 40.000 0.00 0.00 0.00 3.86
822 1765 3.524095 TGTGATCTTGTTTCCACCCAT 57.476 42.857 0.00 0.00 0.00 4.00
823 1766 3.304911 TTGTGATCTTGTTTCCACCCA 57.695 42.857 0.00 0.00 0.00 4.51
824 1767 3.636764 AGTTTGTGATCTTGTTTCCACCC 59.363 43.478 0.00 0.00 0.00 4.61
825 1768 4.918810 AGTTTGTGATCTTGTTTCCACC 57.081 40.909 0.00 0.00 0.00 4.61
841 1784 1.666888 GGCCGTTCTGCATCAAGTTTG 60.667 52.381 0.00 0.00 0.00 2.93
858 1801 0.319405 AAAAGTGCTCTGCATTGGCC 59.681 50.000 0.00 0.00 41.91 5.36
860 1803 2.806608 ACAAAAGTGCTCTGCATTGG 57.193 45.000 11.50 0.00 41.91 3.16
889 1832 5.340528 GGACTTTGGGGATTTGGTCCTTATA 60.341 44.000 0.00 0.00 46.91 0.98
893 1961 1.077169 GGACTTTGGGGATTTGGTCCT 59.923 52.381 0.00 0.00 46.91 3.85
944 2012 4.067896 CACGGCTGATTTTATAGAGGCAT 58.932 43.478 0.00 0.00 0.00 4.40
945 2013 3.466836 CACGGCTGATTTTATAGAGGCA 58.533 45.455 0.00 0.00 0.00 4.75
950 2018 4.993584 AGAGATGCACGGCTGATTTTATAG 59.006 41.667 0.00 0.00 0.00 1.31
957 2025 0.104487 CTCAGAGATGCACGGCTGAT 59.896 55.000 12.80 0.00 35.53 2.90
958 2026 0.967380 TCTCAGAGATGCACGGCTGA 60.967 55.000 0.00 12.08 35.10 4.26
973 2041 2.685388 GTGAGATCAGATGGTCGTCTCA 59.315 50.000 0.00 0.00 41.99 3.27
987 2055 2.801342 GCTCGTCATCTTGGGTGAGATC 60.801 54.545 0.00 0.00 34.20 2.75
1058 2138 3.969265 GCCTCTTGGGATGCATATGCAC 61.969 54.545 31.76 23.12 44.44 4.57
1134 2214 2.933906 GGCTATGCTACGCACACTAAAA 59.066 45.455 0.00 0.00 43.04 1.52
1140 2220 1.065764 CTCGGCTATGCTACGCACA 59.934 57.895 0.00 0.00 43.04 4.57
1157 2237 3.753434 CAGCGACCCTCTCGTGCT 61.753 66.667 0.00 0.00 44.92 4.40
1158 2238 4.803426 CCAGCGACCCTCTCGTGC 62.803 72.222 0.00 0.00 44.92 5.34
1159 2239 4.803426 GCCAGCGACCCTCTCGTG 62.803 72.222 0.00 0.00 44.92 4.35
1161 2241 4.504916 CTGCCAGCGACCCTCTCG 62.505 72.222 0.00 0.00 45.97 4.04
1162 2242 4.828925 GCTGCCAGCGACCCTCTC 62.829 72.222 0.00 0.00 0.00 3.20
1267 2347 1.080974 CGCCGTACTGGTCGAAGTT 60.081 57.895 0.00 0.00 41.21 2.66
1349 2429 2.281484 GCTTGTCCGAGGCACCAA 60.281 61.111 0.00 0.00 0.00 3.67
1399 2494 6.018262 CCCAGGTTTATGTCAACGTATGTATG 60.018 42.308 0.00 0.00 0.00 2.39
1419 2573 4.301072 TTGAGACCAAACTATTCCCAGG 57.699 45.455 0.00 0.00 0.00 4.45
1455 2609 1.094785 CGGCCGAATGAAGAAACCAT 58.905 50.000 24.07 0.00 0.00 3.55
1469 2623 1.465187 GCAACTAAACTAAAGCGGCCG 60.465 52.381 24.05 24.05 0.00 6.13
1473 2627 7.327761 TCAACTACTAGCAACTAAACTAAAGCG 59.672 37.037 0.00 0.00 0.00 4.68
1484 2638 1.555533 GGGGCTCAACTACTAGCAACT 59.444 52.381 0.00 0.00 40.61 3.16
1511 2669 1.273327 CAGCCCAGACCAAACCAAATC 59.727 52.381 0.00 0.00 0.00 2.17
1578 2736 2.194271 GTAGAAGAATTGGTCGCTCGG 58.806 52.381 0.00 0.00 0.00 4.63
1876 3051 2.838467 GGGATGGAGCATCTGGGGG 61.838 68.421 0.00 0.00 40.39 5.40
1897 3072 0.935194 GGAGGGAGGAGGAGAAGGTA 59.065 60.000 0.00 0.00 0.00 3.08
1899 3074 1.074850 GGGAGGGAGGAGGAGAAGG 60.075 68.421 0.00 0.00 0.00 3.46
1900 3075 0.105709 GAGGGAGGGAGGAGGAGAAG 60.106 65.000 0.00 0.00 0.00 2.85
1901 3076 1.595058 GGAGGGAGGGAGGAGGAGAA 61.595 65.000 0.00 0.00 0.00 2.87
2019 3207 6.897706 TGAATCCACAAACTCAAATCATGA 57.102 33.333 0.00 0.00 36.38 3.07
2550 3738 6.305693 AGATGTTCAGTTGTCAACTTAAGC 57.694 37.500 15.73 9.56 40.46 3.09
2551 3739 6.708054 AGGAGATGTTCAGTTGTCAACTTAAG 59.292 38.462 15.73 5.42 40.46 1.85
2552 3740 6.483307 CAGGAGATGTTCAGTTGTCAACTTAA 59.517 38.462 15.73 11.56 40.46 1.85
2555 3743 4.141620 ACAGGAGATGTTCAGTTGTCAACT 60.142 41.667 12.62 12.62 39.96 3.16
2575 3779 6.089551 CACTACGTACTGAGAATTTTCCACAG 59.910 42.308 0.00 11.12 37.77 3.66
2614 3888 4.437587 AGCATCCTGGCCCTGTGC 62.438 66.667 0.00 5.79 40.16 4.57
2651 3925 2.490148 CGGACCGAGCTCCTGCATA 61.490 63.158 8.64 0.00 42.74 3.14
2767 4084 9.474313 TTCTGTAATTATTAAGCAGGACCAAAT 57.526 29.630 0.00 0.00 0.00 2.32
2768 4085 8.871629 TTCTGTAATTATTAAGCAGGACCAAA 57.128 30.769 0.00 0.00 0.00 3.28
2770 4087 7.857456 TCTTCTGTAATTATTAAGCAGGACCA 58.143 34.615 0.00 0.00 0.00 4.02
2771 4088 8.204836 TCTCTTCTGTAATTATTAAGCAGGACC 58.795 37.037 3.74 0.00 0.00 4.46
2772 4089 9.601217 TTCTCTTCTGTAATTATTAAGCAGGAC 57.399 33.333 3.74 0.00 0.00 3.85
2774 4091 9.606631 AGTTCTCTTCTGTAATTATTAAGCAGG 57.393 33.333 3.74 0.00 0.00 4.85
2947 4274 1.333636 AACCTCTCCAGCCATCTCGG 61.334 60.000 0.00 0.00 38.11 4.63
2948 4275 0.103937 GAACCTCTCCAGCCATCTCG 59.896 60.000 0.00 0.00 0.00 4.04
3117 4444 7.079182 AGTATGACTATCGCAGTATAGCTTC 57.921 40.000 0.00 0.00 37.72 3.86
3412 6979 2.048127 GATATGCTCCGTCGGGCC 60.048 66.667 12.29 0.00 0.00 5.80
3453 7020 6.547510 ACTGGACAAGCAACTTAGAATTTCTT 59.452 34.615 3.86 0.00 0.00 2.52
3454 7021 6.064717 ACTGGACAAGCAACTTAGAATTTCT 58.935 36.000 4.03 4.03 0.00 2.52
3455 7022 6.017109 TGACTGGACAAGCAACTTAGAATTTC 60.017 38.462 0.00 0.00 0.00 2.17
3463 7044 3.763897 ACTTTTGACTGGACAAGCAACTT 59.236 39.130 0.00 0.00 0.00 2.66
3491 7079 7.242079 GTCACAAATTCAGAAGATGATCACTG 58.758 38.462 0.00 11.48 37.89 3.66
3511 7810 1.947146 CAGAAACGCGACGGTCACA 60.947 57.895 15.93 0.00 0.00 3.58
3512 7811 0.661187 TACAGAAACGCGACGGTCAC 60.661 55.000 15.93 0.00 0.00 3.67
3514 7813 1.130955 TTTACAGAAACGCGACGGTC 58.869 50.000 15.93 3.86 0.00 4.79
3517 7816 2.334454 GCAATTTTACAGAAACGCGACG 59.666 45.455 15.93 0.00 0.00 5.12
3521 7820 3.428198 TGCATGCAATTTTACAGAAACGC 59.572 39.130 20.30 0.00 0.00 4.84
3699 8520 4.084952 CGTGTGGATGAAAAACATTGCAAG 60.085 41.667 4.94 0.00 39.56 4.01
3711 8532 0.037697 CTTCCGGACGTGTGGATGAA 60.038 55.000 1.83 0.00 33.42 2.57
4089 9149 0.318441 TCGTCAGTTTCAGGCTCAGG 59.682 55.000 0.00 0.00 0.00 3.86
4090 9150 1.000283 AGTCGTCAGTTTCAGGCTCAG 60.000 52.381 0.00 0.00 0.00 3.35
4091 9151 1.040646 AGTCGTCAGTTTCAGGCTCA 58.959 50.000 0.00 0.00 0.00 4.26
4092 9152 2.062519 GAAGTCGTCAGTTTCAGGCTC 58.937 52.381 0.00 0.00 0.00 4.70
4093 9153 1.270358 GGAAGTCGTCAGTTTCAGGCT 60.270 52.381 0.00 0.00 0.00 4.58
4094 9154 1.149148 GGAAGTCGTCAGTTTCAGGC 58.851 55.000 0.00 0.00 0.00 4.85
4113 9173 1.679311 TGCCACCTAAGCAGTGAGG 59.321 57.895 0.00 0.00 37.42 3.86
4121 9181 2.705658 TGGACATATCCTGCCACCTAAG 59.294 50.000 0.00 0.00 46.43 2.18
4592 9659 1.128188 AGAGAGAAAGGCCCACCGTT 61.128 55.000 0.00 0.00 42.76 4.44
4593 9660 1.536662 AGAGAGAAAGGCCCACCGT 60.537 57.895 0.00 0.00 42.76 4.83
4597 9664 0.473694 TGACCAGAGAGAAAGGCCCA 60.474 55.000 0.00 0.00 0.00 5.36
4798 9883 2.636830 CTCACCAGATCCGAGCAAAAT 58.363 47.619 0.00 0.00 0.00 1.82
4986 10078 2.664851 ACACGCATCACCACCACG 60.665 61.111 0.00 0.00 0.00 4.94
4988 10080 2.356913 CGACACGCATCACCACCA 60.357 61.111 0.00 0.00 0.00 4.17
5121 10214 2.678934 AGTCAACCCGCCGAGCTA 60.679 61.111 0.00 0.00 0.00 3.32
5174 10267 1.153429 GTCGAAACAGGCCGCCTAT 60.153 57.895 12.83 0.00 29.64 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.