Multiple sequence alignment - TraesCS5D01G250200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G250200 chr5D 100.000 2335 0 0 824 3158 356636632 356638966 0.000000e+00 4313
1 TraesCS5D01G250200 chr5D 100.000 549 0 0 1 549 356635809 356636357 0.000000e+00 1014
2 TraesCS5D01G250200 chr5D 87.135 513 46 12 1 506 554615740 554615241 5.910000e-157 564
3 TraesCS5D01G250200 chr5D 93.976 83 4 1 824 906 532007457 532007538 1.190000e-24 124
4 TraesCS5D01G250200 chr5A 95.950 1827 50 6 917 2723 456099974 456098152 0.000000e+00 2942
5 TraesCS5D01G250200 chr5A 76.435 662 122 17 1694 2344 30638382 30639020 8.450000e-86 327
6 TraesCS5D01G250200 chr5A 93.976 83 3 1 824 906 652970043 652969963 1.190000e-24 124
7 TraesCS5D01G250200 chr5B 94.118 1836 56 18 906 2697 421499349 421501176 0.000000e+00 2745
8 TraesCS5D01G250200 chr6D 93.810 517 21 2 1 506 119458523 119459039 0.000000e+00 767
9 TraesCS5D01G250200 chr6D 77.732 1226 245 24 985 2192 14727342 14726127 0.000000e+00 726
10 TraesCS5D01G250200 chr6D 76.488 1361 278 31 999 2338 8987230 8988569 0.000000e+00 702
11 TraesCS5D01G250200 chr6D 89.630 540 32 11 1 516 471164238 471163699 0.000000e+00 665
12 TraesCS5D01G250200 chr6D 88.603 544 24 14 1 506 68079327 68079870 7.440000e-176 627
13 TraesCS5D01G250200 chr6D 76.406 1191 252 25 960 2136 16775780 16774605 1.610000e-172 616
14 TraesCS5D01G250200 chr6D 87.711 415 36 11 2721 3123 466543996 466543585 1.330000e-128 470
15 TraesCS5D01G250200 chr6D 96.386 83 3 0 824 906 144552329 144552411 1.530000e-28 137
16 TraesCS5D01G250200 chr6D 95.181 83 3 1 824 906 119459211 119459292 2.560000e-26 130
17 TraesCS5D01G250200 chr6D 96.053 76 2 1 3083 3158 466543595 466543521 4.280000e-24 122
18 TraesCS5D01G250200 chr6B 76.573 1319 282 21 983 2292 52981062 52979762 0.000000e+00 699
19 TraesCS5D01G250200 chr6B 76.761 1235 251 31 983 2192 16607943 16609166 0.000000e+00 658
20 TraesCS5D01G250200 chr6B 76.078 1183 262 17 985 2158 52568258 52567088 5.830000e-167 597
21 TraesCS5D01G250200 chr6B 75.423 1241 271 27 963 2185 53062549 53061325 3.530000e-159 571
22 TraesCS5D01G250200 chr6B 78.306 779 147 19 1520 2287 16339499 16340266 1.700000e-132 483
23 TraesCS5D01G250200 chr6B 82.990 388 34 12 2724 3100 498949131 498948765 3.930000e-84 322
24 TraesCS5D01G250200 chr6A 77.690 1134 217 27 983 2100 9336025 9337138 0.000000e+00 660
25 TraesCS5D01G250200 chr6A 75.994 1233 256 29 985 2192 9473104 9474321 4.510000e-168 601
26 TraesCS5D01G250200 chr6A 76.277 1155 238 25 997 2136 17540125 17541258 1.630000e-162 582
27 TraesCS5D01G250200 chr6A 75.654 1224 249 22 984 2183 18732361 18733559 5.910000e-157 564
28 TraesCS5D01G250200 chr1D 89.338 544 20 13 1 506 194215949 194216492 0.000000e+00 649
29 TraesCS5D01G250200 chr1D 88.000 525 43 12 1 517 453416730 453417242 1.250000e-168 603
30 TraesCS5D01G250200 chr1D 86.715 557 30 20 1 516 273558588 273558035 2.110000e-161 579
31 TraesCS5D01G250200 chr1D 95.181 83 3 1 824 906 48469587 48469668 2.560000e-26 130
32 TraesCS5D01G250200 chr1D 95.181 83 2 2 824 906 273557903 273557823 2.560000e-26 130
33 TraesCS5D01G250200 chr2D 88.489 556 23 17 1 516 539241024 539241578 4.440000e-178 634
34 TraesCS5D01G250200 chr2D 86.830 448 19 8 109 516 634415925 634415478 6.170000e-127 464
35 TraesCS5D01G250200 chr2D 93.976 83 2 2 824 906 512891628 512891549 4.280000e-24 122
36 TraesCS5D01G250200 chr7D 88.123 522 48 11 1 517 69225467 69224955 2.690000e-170 608
37 TraesCS5D01G250200 chr7D 91.162 396 34 1 1 396 426573909 426573515 1.290000e-148 536
38 TraesCS5D01G250200 chr7D 84.507 568 36 17 1 516 88346708 88347275 6.040000e-142 514
39 TraesCS5D01G250200 chr7D 88.550 393 33 8 2718 3100 211764629 211764239 1.720000e-127 466
40 TraesCS5D01G250200 chr7D 92.171 281 11 2 247 516 58195116 58194836 1.370000e-103 387
41 TraesCS5D01G250200 chr7D 88.021 192 19 4 2724 2913 620220850 620221039 1.140000e-54 224
42 TraesCS5D01G250200 chr7D 96.053 76 2 1 3083 3158 211764225 211764151 4.280000e-24 122
43 TraesCS5D01G250200 chr2A 91.391 453 21 9 2722 3158 572574657 572574207 3.480000e-169 604
44 TraesCS5D01G250200 chr2A 85.122 410 47 6 2727 3123 510811935 510812343 1.050000e-109 407
45 TraesCS5D01G250200 chr7A 87.280 511 49 12 1 506 69854888 69855387 1.270000e-158 569
46 TraesCS5D01G250200 chr7A 86.375 411 43 8 2724 3123 519567159 519567567 1.340000e-118 436
47 TraesCS5D01G250200 chr3D 90.727 399 32 4 1 396 108922750 108922354 7.760000e-146 527
48 TraesCS5D01G250200 chr3D 75.681 1028 218 26 991 2001 582879836 582880848 4.740000e-133 484
49 TraesCS5D01G250200 chr3D 95.181 83 2 2 824 906 2276080 2276000 2.560000e-26 130
50 TraesCS5D01G250200 chr4B 83.789 512 48 22 1 501 180675929 180675442 1.340000e-123 453
51 TraesCS5D01G250200 chr3A 85.507 414 44 8 2724 3123 28115236 28115647 4.870000e-113 418
52 TraesCS5D01G250200 chr1B 84.504 413 35 13 2723 3123 574307057 574306662 6.390000e-102 381
53 TraesCS5D01G250200 chr1B 92.105 76 5 1 3083 3158 574306672 574306598 4.310000e-19 106
54 TraesCS5D01G250200 chr7B 87.379 206 24 2 2725 2929 71286666 71286870 5.270000e-58 235
55 TraesCS5D01G250200 chr7B 96.053 76 2 1 3083 3158 71287109 71287183 4.280000e-24 122
56 TraesCS5D01G250200 chr1A 85.052 194 16 6 335 516 581598027 581597835 5.380000e-43 185
57 TraesCS5D01G250200 chr1A 94.624 93 4 1 425 516 577263863 577263771 3.280000e-30 143
58 TraesCS5D01G250200 chrUn 80.672 238 37 6 2108 2344 42220936 42220707 3.240000e-40 176
59 TraesCS5D01G250200 chr4D 95.181 83 4 0 824 906 470146853 470146935 7.110000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G250200 chr5D 356635809 356638966 3157 False 2663.5 4313 100.0000 1 3158 2 chr5D.!!$F2 3157
1 TraesCS5D01G250200 chr5A 456098152 456099974 1822 True 2942.0 2942 95.9500 917 2723 1 chr5A.!!$R1 1806
2 TraesCS5D01G250200 chr5A 30638382 30639020 638 False 327.0 327 76.4350 1694 2344 1 chr5A.!!$F1 650
3 TraesCS5D01G250200 chr5B 421499349 421501176 1827 False 2745.0 2745 94.1180 906 2697 1 chr5B.!!$F1 1791
4 TraesCS5D01G250200 chr6D 14726127 14727342 1215 True 726.0 726 77.7320 985 2192 1 chr6D.!!$R1 1207
5 TraesCS5D01G250200 chr6D 8987230 8988569 1339 False 702.0 702 76.4880 999 2338 1 chr6D.!!$F1 1339
6 TraesCS5D01G250200 chr6D 471163699 471164238 539 True 665.0 665 89.6300 1 516 1 chr6D.!!$R3 515
7 TraesCS5D01G250200 chr6D 68079327 68079870 543 False 627.0 627 88.6030 1 506 1 chr6D.!!$F2 505
8 TraesCS5D01G250200 chr6D 16774605 16775780 1175 True 616.0 616 76.4060 960 2136 1 chr6D.!!$R2 1176
9 TraesCS5D01G250200 chr6D 119458523 119459292 769 False 448.5 767 94.4955 1 906 2 chr6D.!!$F4 905
10 TraesCS5D01G250200 chr6B 52979762 52981062 1300 True 699.0 699 76.5730 983 2292 1 chr6B.!!$R2 1309
11 TraesCS5D01G250200 chr6B 16607943 16609166 1223 False 658.0 658 76.7610 983 2192 1 chr6B.!!$F2 1209
12 TraesCS5D01G250200 chr6B 52567088 52568258 1170 True 597.0 597 76.0780 985 2158 1 chr6B.!!$R1 1173
13 TraesCS5D01G250200 chr6B 53061325 53062549 1224 True 571.0 571 75.4230 963 2185 1 chr6B.!!$R3 1222
14 TraesCS5D01G250200 chr6B 16339499 16340266 767 False 483.0 483 78.3060 1520 2287 1 chr6B.!!$F1 767
15 TraesCS5D01G250200 chr6A 9336025 9337138 1113 False 660.0 660 77.6900 983 2100 1 chr6A.!!$F1 1117
16 TraesCS5D01G250200 chr6A 9473104 9474321 1217 False 601.0 601 75.9940 985 2192 1 chr6A.!!$F2 1207
17 TraesCS5D01G250200 chr6A 17540125 17541258 1133 False 582.0 582 76.2770 997 2136 1 chr6A.!!$F3 1139
18 TraesCS5D01G250200 chr6A 18732361 18733559 1198 False 564.0 564 75.6540 984 2183 1 chr6A.!!$F4 1199
19 TraesCS5D01G250200 chr1D 194215949 194216492 543 False 649.0 649 89.3380 1 506 1 chr1D.!!$F2 505
20 TraesCS5D01G250200 chr1D 453416730 453417242 512 False 603.0 603 88.0000 1 517 1 chr1D.!!$F3 516
21 TraesCS5D01G250200 chr1D 273557823 273558588 765 True 354.5 579 90.9480 1 906 2 chr1D.!!$R1 905
22 TraesCS5D01G250200 chr2D 539241024 539241578 554 False 634.0 634 88.4890 1 516 1 chr2D.!!$F1 515
23 TraesCS5D01G250200 chr7D 69224955 69225467 512 True 608.0 608 88.1230 1 517 1 chr7D.!!$R2 516
24 TraesCS5D01G250200 chr7D 88346708 88347275 567 False 514.0 514 84.5070 1 516 1 chr7D.!!$F1 515
25 TraesCS5D01G250200 chr3D 582879836 582880848 1012 False 484.0 484 75.6810 991 2001 1 chr3D.!!$F1 1010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 661 0.461870 GGTATGCATGCACCAGTCGA 60.462 55.0 25.37 0.0 34.77 4.20 F
1549 1811 0.322546 CAAGGTGGTAGAGCCCAACC 60.323 60.0 0.00 0.0 43.67 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2423 2.290093 GCAAGCAGCATCATAGTCTTCC 59.710 50.0 0.0 0.0 44.79 3.46 R
2925 3294 0.032515 TCCGTTCCCTCTATGGCTGA 60.033 55.0 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.279982 TCATTATGGTGTCACTACCGGTA 58.720 43.478 14.95 14.95 43.87 4.02
89 90 2.103094 TCCATCCTGAAATCGGTAGCTG 59.897 50.000 0.00 0.00 0.00 4.24
132 133 3.443052 TCCCAGGGTGAAAACTACGATA 58.557 45.455 5.01 0.00 0.00 2.92
211 213 4.973211 TCTGAAGGGGGTTTTATAGGTAGG 59.027 45.833 0.00 0.00 0.00 3.18
232 234 2.167662 GAGGAGAAAATGGCGGGAAAA 58.832 47.619 0.00 0.00 0.00 2.29
362 544 2.345991 CGGGAAAGAGTTGGCGGA 59.654 61.111 0.00 0.00 0.00 5.54
463 661 0.461870 GGTATGCATGCACCAGTCGA 60.462 55.000 25.37 0.00 34.77 4.20
519 717 2.043248 GGCCGACTGGACCTAGGA 60.043 66.667 17.98 0.00 37.27 2.94
520 718 2.424733 GGCCGACTGGACCTAGGAC 61.425 68.421 17.98 9.70 37.27 3.85
521 719 2.424733 GCCGACTGGACCTAGGACC 61.425 68.421 21.93 21.93 37.49 4.46
522 720 1.757340 CCGACTGGACCTAGGACCC 60.757 68.421 24.99 19.75 37.49 4.46
523 721 1.757340 CGACTGGACCTAGGACCCC 60.757 68.421 24.99 17.51 0.00 4.95
524 722 1.390926 GACTGGACCTAGGACCCCA 59.609 63.158 24.99 20.56 0.00 4.96
525 723 4.382852 CTGGACCTAGGACCCCAG 57.617 66.667 24.99 24.63 40.01 4.45
526 724 1.392534 CTGGACCTAGGACCCCAGT 59.607 63.158 24.99 0.00 40.84 4.00
527 725 0.688087 CTGGACCTAGGACCCCAGTC 60.688 65.000 24.99 6.30 40.84 3.51
528 726 1.757340 GGACCTAGGACCCCAGTCG 60.757 68.421 17.98 0.00 44.54 4.18
529 727 1.757340 GACCTAGGACCCCAGTCGG 60.757 68.421 17.98 0.00 44.54 4.79
530 728 3.155167 CCTAGGACCCCAGTCGGC 61.155 72.222 1.05 0.00 44.54 5.54
531 729 3.155167 CTAGGACCCCAGTCGGCC 61.155 72.222 0.00 0.00 44.54 6.13
532 730 3.680196 TAGGACCCCAGTCGGCCT 61.680 66.667 0.00 0.00 44.54 5.19
533 731 3.976490 TAGGACCCCAGTCGGCCTG 62.976 68.421 0.00 0.00 44.54 4.85
535 733 3.637273 GACCCCAGTCGGCCTGTT 61.637 66.667 0.00 0.00 39.74 3.16
536 734 3.901797 GACCCCAGTCGGCCTGTTG 62.902 68.421 0.00 0.00 39.74 3.33
537 735 3.953775 CCCCAGTCGGCCTGTTGT 61.954 66.667 0.00 0.00 39.74 3.32
538 736 2.669569 CCCAGTCGGCCTGTTGTG 60.670 66.667 0.00 0.00 39.74 3.33
539 737 2.669569 CCAGTCGGCCTGTTGTGG 60.670 66.667 0.00 0.00 39.74 4.17
540 738 2.669569 CAGTCGGCCTGTTGTGGG 60.670 66.667 0.00 0.00 36.37 4.61
541 739 3.168528 AGTCGGCCTGTTGTGGGT 61.169 61.111 0.00 0.00 0.00 4.51
542 740 2.668550 GTCGGCCTGTTGTGGGTC 60.669 66.667 0.00 0.00 0.00 4.46
543 741 3.948719 TCGGCCTGTTGTGGGTCC 61.949 66.667 0.00 0.00 0.00 4.46
544 742 3.953775 CGGCCTGTTGTGGGTCCT 61.954 66.667 0.00 0.00 0.00 3.85
545 743 2.282462 GGCCTGTTGTGGGTCCTG 60.282 66.667 0.00 0.00 0.00 3.86
546 744 2.515901 GCCTGTTGTGGGTCCTGT 59.484 61.111 0.00 0.00 0.00 4.00
547 745 1.600916 GCCTGTTGTGGGTCCTGTC 60.601 63.158 0.00 0.00 0.00 3.51
548 746 1.301716 CCTGTTGTGGGTCCTGTCG 60.302 63.158 0.00 0.00 0.00 4.35
1044 1254 3.041211 CCTCACCCATGTCCTCTATTCA 58.959 50.000 0.00 0.00 0.00 2.57
1045 1255 3.070734 CCTCACCCATGTCCTCTATTCAG 59.929 52.174 0.00 0.00 0.00 3.02
1345 1588 3.244422 GGACACACTAACCTCCAATGTCA 60.244 47.826 0.00 0.00 37.34 3.58
1549 1811 0.322546 CAAGGTGGTAGAGCCCAACC 60.323 60.000 0.00 0.00 43.67 3.77
2100 2423 3.264897 GCTGCACCATACCTCGCG 61.265 66.667 0.00 0.00 0.00 5.87
2413 2757 3.179443 ACACATGTATTGGAGCTACGG 57.821 47.619 0.00 0.00 0.00 4.02
2427 2771 4.433615 GAGCTACGGAATTGTGAGATCAA 58.566 43.478 0.00 0.00 0.00 2.57
2534 2894 6.765036 CAGTATAGAAGAAAGCATGTCATGGT 59.235 38.462 11.76 11.76 43.93 3.55
2627 2996 8.523658 TGGAATATATGTGACTGAGTAGTATGC 58.476 37.037 0.00 0.00 37.25 3.14
2661 3030 9.354673 CCTGGTACATTTTATGGAATACTGATT 57.645 33.333 0.00 0.00 38.20 2.57
2682 3051 1.294659 GGAAGCAGCGGAGTGTTCTG 61.295 60.000 0.00 0.00 0.00 3.02
2705 3074 3.460868 GCCCCTGCAATTTCCGGG 61.461 66.667 0.00 0.00 37.47 5.73
2723 3092 3.369892 CCGGGGCAATCCTCTAATCTATG 60.370 52.174 0.00 0.00 35.33 2.23
2724 3093 3.515502 CGGGGCAATCCTCTAATCTATGA 59.484 47.826 0.00 0.00 35.33 2.15
2725 3094 4.382470 CGGGGCAATCCTCTAATCTATGAG 60.382 50.000 0.00 0.00 35.33 2.90
2726 3095 4.780021 GGGGCAATCCTCTAATCTATGAGA 59.220 45.833 0.00 0.00 35.33 3.27
2727 3096 5.104982 GGGGCAATCCTCTAATCTATGAGAG 60.105 48.000 0.00 0.00 39.18 3.20
2728 3097 5.719085 GGGCAATCCTCTAATCTATGAGAGA 59.281 44.000 5.97 0.00 41.55 3.10
2729 3098 6.212388 GGGCAATCCTCTAATCTATGAGAGAA 59.788 42.308 5.97 0.00 41.55 2.87
2730 3099 7.092935 GGGCAATCCTCTAATCTATGAGAGAAT 60.093 40.741 5.97 0.00 41.55 2.40
2731 3100 8.320617 GGCAATCCTCTAATCTATGAGAGAATT 58.679 37.037 5.97 0.00 41.55 2.17
2732 3101 9.369904 GCAATCCTCTAATCTATGAGAGAATTC 57.630 37.037 5.97 0.00 41.55 2.17
2733 3102 9.874205 CAATCCTCTAATCTATGAGAGAATTCC 57.126 37.037 5.97 0.00 41.55 3.01
2734 3103 9.842196 AATCCTCTAATCTATGAGAGAATTCCT 57.158 33.333 5.97 0.00 41.55 3.36
2735 3104 9.842196 ATCCTCTAATCTATGAGAGAATTCCTT 57.158 33.333 5.97 0.00 41.55 3.36
2748 3117 9.793259 TGAGAGAATTCCTTATTTAAACACAGT 57.207 29.630 0.65 0.00 0.00 3.55
2764 3133 6.902224 AACACAGTCTTAAAATTTGTTGCC 57.098 33.333 0.00 0.00 0.00 4.52
2765 3134 6.220726 ACACAGTCTTAAAATTTGTTGCCT 57.779 33.333 0.00 0.00 0.00 4.75
2766 3135 6.639563 ACACAGTCTTAAAATTTGTTGCCTT 58.360 32.000 0.00 0.00 0.00 4.35
2767 3136 7.777095 ACACAGTCTTAAAATTTGTTGCCTTA 58.223 30.769 0.00 0.00 0.00 2.69
2768 3137 8.421002 ACACAGTCTTAAAATTTGTTGCCTTAT 58.579 29.630 0.00 0.00 0.00 1.73
2769 3138 9.260002 CACAGTCTTAAAATTTGTTGCCTTATT 57.740 29.630 0.00 0.00 0.00 1.40
2770 3139 9.830975 ACAGTCTTAAAATTTGTTGCCTTATTT 57.169 25.926 0.00 0.00 0.00 1.40
2774 3143 9.823647 TCTTAAAATTTGTTGCCTTATTTGACA 57.176 25.926 0.00 0.00 0.00 3.58
2775 3144 9.862585 CTTAAAATTTGTTGCCTTATTTGACAC 57.137 29.630 0.00 0.00 0.00 3.67
2776 3145 9.606631 TTAAAATTTGTTGCCTTATTTGACACT 57.393 25.926 0.00 0.00 0.00 3.55
2777 3146 7.481275 AAATTTGTTGCCTTATTTGACACTG 57.519 32.000 0.00 0.00 0.00 3.66
2778 3147 5.843673 TTTGTTGCCTTATTTGACACTGA 57.156 34.783 0.00 0.00 0.00 3.41
2779 3148 5.843673 TTGTTGCCTTATTTGACACTGAA 57.156 34.783 0.00 0.00 0.00 3.02
2780 3149 6.403866 TTGTTGCCTTATTTGACACTGAAT 57.596 33.333 0.00 0.00 0.00 2.57
2781 3150 6.012658 TGTTGCCTTATTTGACACTGAATC 57.987 37.500 0.00 0.00 0.00 2.52
2782 3151 5.769662 TGTTGCCTTATTTGACACTGAATCT 59.230 36.000 0.00 0.00 0.00 2.40
2783 3152 6.265196 TGTTGCCTTATTTGACACTGAATCTT 59.735 34.615 0.00 0.00 0.00 2.40
2784 3153 6.899393 TGCCTTATTTGACACTGAATCTTT 57.101 33.333 0.00 0.00 0.00 2.52
2785 3154 7.288810 TGCCTTATTTGACACTGAATCTTTT 57.711 32.000 0.00 0.00 0.00 2.27
2786 3155 7.725251 TGCCTTATTTGACACTGAATCTTTTT 58.275 30.769 0.00 0.00 0.00 1.94
2787 3156 7.867403 TGCCTTATTTGACACTGAATCTTTTTC 59.133 33.333 0.00 0.00 0.00 2.29
2788 3157 8.084684 GCCTTATTTGACACTGAATCTTTTTCT 58.915 33.333 0.00 0.00 0.00 2.52
2789 3158 9.617975 CCTTATTTGACACTGAATCTTTTTCTC 57.382 33.333 0.00 0.00 0.00 2.87
2793 3162 6.867662 TGACACTGAATCTTTTTCTCTTCC 57.132 37.500 0.00 0.00 0.00 3.46
2794 3163 6.595682 TGACACTGAATCTTTTTCTCTTCCT 58.404 36.000 0.00 0.00 0.00 3.36
2795 3164 7.056635 TGACACTGAATCTTTTTCTCTTCCTT 58.943 34.615 0.00 0.00 0.00 3.36
2796 3165 8.210946 TGACACTGAATCTTTTTCTCTTCCTTA 58.789 33.333 0.00 0.00 0.00 2.69
2797 3166 9.225436 GACACTGAATCTTTTTCTCTTCCTTAT 57.775 33.333 0.00 0.00 0.00 1.73
2798 3167 9.579932 ACACTGAATCTTTTTCTCTTCCTTATT 57.420 29.630 0.00 0.00 0.00 1.40
2806 3175 9.635404 TCTTTTTCTCTTCCTTATTTAACACCA 57.365 29.630 0.00 0.00 0.00 4.17
2809 3178 8.990163 TTTCTCTTCCTTATTTAACACCAAGT 57.010 30.769 0.00 0.00 0.00 3.16
2810 3179 8.617290 TTCTCTTCCTTATTTAACACCAAGTC 57.383 34.615 0.00 0.00 0.00 3.01
2811 3180 7.974504 TCTCTTCCTTATTTAACACCAAGTCT 58.025 34.615 0.00 0.00 0.00 3.24
2812 3181 9.096823 TCTCTTCCTTATTTAACACCAAGTCTA 57.903 33.333 0.00 0.00 0.00 2.59
2813 3182 9.720769 CTCTTCCTTATTTAACACCAAGTCTAA 57.279 33.333 0.00 0.00 0.00 2.10
2822 3191 9.869757 ATTTAACACCAAGTCTAAATTTATGCC 57.130 29.630 0.00 0.00 0.00 4.40
2823 3192 5.914898 ACACCAAGTCTAAATTTATGCCC 57.085 39.130 0.00 0.00 0.00 5.36
2824 3193 5.580022 ACACCAAGTCTAAATTTATGCCCT 58.420 37.500 0.00 0.00 0.00 5.19
2825 3194 6.016555 ACACCAAGTCTAAATTTATGCCCTT 58.983 36.000 0.00 0.00 0.00 3.95
2826 3195 6.496911 ACACCAAGTCTAAATTTATGCCCTTT 59.503 34.615 0.00 0.00 0.00 3.11
2827 3196 7.672239 ACACCAAGTCTAAATTTATGCCCTTTA 59.328 33.333 0.00 0.00 0.00 1.85
2828 3197 8.695456 CACCAAGTCTAAATTTATGCCCTTTAT 58.305 33.333 0.00 0.00 0.00 1.40
2829 3198 8.695456 ACCAAGTCTAAATTTATGCCCTTTATG 58.305 33.333 0.00 0.00 0.00 1.90
2830 3199 8.912988 CCAAGTCTAAATTTATGCCCTTTATGA 58.087 33.333 0.00 0.00 0.00 2.15
2831 3200 9.736023 CAAGTCTAAATTTATGCCCTTTATGAC 57.264 33.333 0.00 0.00 0.00 3.06
2832 3201 9.474313 AAGTCTAAATTTATGCCCTTTATGACA 57.526 29.630 0.00 0.00 0.00 3.58
2833 3202 8.903820 AGTCTAAATTTATGCCCTTTATGACAC 58.096 33.333 0.00 0.00 0.00 3.67
2834 3203 8.903820 GTCTAAATTTATGCCCTTTATGACACT 58.096 33.333 0.00 0.00 0.00 3.55
2835 3204 9.474313 TCTAAATTTATGCCCTTTATGACACTT 57.526 29.630 0.00 0.00 0.00 3.16
2836 3205 9.736023 CTAAATTTATGCCCTTTATGACACTTC 57.264 33.333 0.00 0.00 0.00 3.01
2837 3206 6.715347 ATTTATGCCCTTTATGACACTTCC 57.285 37.500 0.00 0.00 0.00 3.46
2838 3207 2.107950 TGCCCTTTATGACACTTCCG 57.892 50.000 0.00 0.00 0.00 4.30
2839 3208 1.349688 TGCCCTTTATGACACTTCCGT 59.650 47.619 0.00 0.00 0.00 4.69
2840 3209 2.007608 GCCCTTTATGACACTTCCGTC 58.992 52.381 0.00 0.00 36.40 4.79
2841 3210 2.629051 CCCTTTATGACACTTCCGTCC 58.371 52.381 0.00 0.00 34.88 4.79
2842 3211 2.027561 CCCTTTATGACACTTCCGTCCA 60.028 50.000 0.00 0.00 34.88 4.02
2843 3212 3.370527 CCCTTTATGACACTTCCGTCCAT 60.371 47.826 0.00 0.00 34.88 3.41
2844 3213 4.261801 CCTTTATGACACTTCCGTCCATT 58.738 43.478 0.00 0.00 34.88 3.16
2845 3214 4.700213 CCTTTATGACACTTCCGTCCATTT 59.300 41.667 0.00 0.00 34.88 2.32
2846 3215 5.391950 CCTTTATGACACTTCCGTCCATTTG 60.392 44.000 0.00 0.00 34.88 2.32
2847 3216 2.920724 TGACACTTCCGTCCATTTGA 57.079 45.000 0.00 0.00 34.88 2.69
2848 3217 3.201353 TGACACTTCCGTCCATTTGAA 57.799 42.857 0.00 0.00 34.88 2.69
2849 3218 3.138304 TGACACTTCCGTCCATTTGAAG 58.862 45.455 0.00 0.00 40.96 3.02
2850 3219 1.880027 ACACTTCCGTCCATTTGAAGC 59.120 47.619 0.00 0.00 39.23 3.86
2851 3220 1.200020 CACTTCCGTCCATTTGAAGCC 59.800 52.381 0.00 0.00 39.23 4.35
2852 3221 1.073923 ACTTCCGTCCATTTGAAGCCT 59.926 47.619 0.00 0.00 39.23 4.58
2853 3222 2.162681 CTTCCGTCCATTTGAAGCCTT 58.837 47.619 0.00 0.00 30.19 4.35
2854 3223 3.244770 ACTTCCGTCCATTTGAAGCCTTA 60.245 43.478 0.00 0.00 39.23 2.69
2855 3224 3.426787 TCCGTCCATTTGAAGCCTTAA 57.573 42.857 0.00 0.00 0.00 1.85
2856 3225 3.078837 TCCGTCCATTTGAAGCCTTAAC 58.921 45.455 0.00 0.00 0.00 2.01
2857 3226 2.159572 CCGTCCATTTGAAGCCTTAACG 60.160 50.000 0.00 0.00 0.00 3.18
2858 3227 2.159572 CGTCCATTTGAAGCCTTAACGG 60.160 50.000 0.00 0.00 0.00 4.44
2859 3228 2.817844 GTCCATTTGAAGCCTTAACGGT 59.182 45.455 0.00 0.00 34.25 4.83
2860 3229 2.817258 TCCATTTGAAGCCTTAACGGTG 59.183 45.455 0.00 0.00 34.25 4.94
2861 3230 2.556622 CCATTTGAAGCCTTAACGGTGT 59.443 45.455 0.00 0.00 34.25 4.16
2862 3231 3.005367 CCATTTGAAGCCTTAACGGTGTT 59.995 43.478 0.00 0.00 34.25 3.32
2863 3232 4.216687 CCATTTGAAGCCTTAACGGTGTTA 59.783 41.667 0.00 0.00 34.25 2.41
2864 3233 5.278561 CCATTTGAAGCCTTAACGGTGTTAA 60.279 40.000 2.52 2.52 34.25 2.01
2865 3234 5.831702 TTTGAAGCCTTAACGGTGTTAAA 57.168 34.783 3.98 0.00 34.25 1.52
2866 3235 6.394025 TTTGAAGCCTTAACGGTGTTAAAT 57.606 33.333 3.98 0.00 34.25 1.40
2867 3236 5.365403 TGAAGCCTTAACGGTGTTAAATG 57.635 39.130 3.98 0.59 34.25 2.32
2868 3237 5.064558 TGAAGCCTTAACGGTGTTAAATGA 58.935 37.500 3.98 0.00 34.25 2.57
2869 3238 5.049267 TGAAGCCTTAACGGTGTTAAATGAC 60.049 40.000 3.98 0.00 34.25 3.06
2870 3239 4.391155 AGCCTTAACGGTGTTAAATGACA 58.609 39.130 3.98 0.00 34.25 3.58
2871 3240 5.007682 AGCCTTAACGGTGTTAAATGACAT 58.992 37.500 3.98 0.00 34.25 3.06
2872 3241 5.123344 AGCCTTAACGGTGTTAAATGACATC 59.877 40.000 3.98 0.00 34.25 3.06
2873 3242 5.123344 GCCTTAACGGTGTTAAATGACATCT 59.877 40.000 3.98 0.00 34.25 2.90
2874 3243 6.542852 CCTTAACGGTGTTAAATGACATCTG 58.457 40.000 3.98 0.00 0.00 2.90
2875 3244 6.370442 CCTTAACGGTGTTAAATGACATCTGA 59.630 38.462 3.98 0.00 0.00 3.27
2876 3245 7.094975 CCTTAACGGTGTTAAATGACATCTGAA 60.095 37.037 3.98 0.00 0.00 3.02
2877 3246 6.627395 AACGGTGTTAAATGACATCTGAAA 57.373 33.333 0.00 0.00 0.00 2.69
2878 3247 6.627395 ACGGTGTTAAATGACATCTGAAAA 57.373 33.333 0.00 0.00 0.00 2.29
2879 3248 6.668323 ACGGTGTTAAATGACATCTGAAAAG 58.332 36.000 0.00 0.00 0.00 2.27
2880 3249 6.485313 ACGGTGTTAAATGACATCTGAAAAGA 59.515 34.615 0.00 0.00 0.00 2.52
2881 3250 6.797033 CGGTGTTAAATGACATCTGAAAAGAC 59.203 38.462 0.00 0.00 0.00 3.01
2882 3251 7.084486 GGTGTTAAATGACATCTGAAAAGACC 58.916 38.462 0.00 0.00 0.00 3.85
2883 3252 7.040409 GGTGTTAAATGACATCTGAAAAGACCT 60.040 37.037 0.00 0.00 0.00 3.85
2884 3253 8.999431 GTGTTAAATGACATCTGAAAAGACCTA 58.001 33.333 0.00 0.00 0.00 3.08
2885 3254 9.739276 TGTTAAATGACATCTGAAAAGACCTAT 57.261 29.630 0.00 0.00 0.00 2.57
2890 3259 8.738645 ATGACATCTGAAAAGACCTATTTACC 57.261 34.615 0.00 0.00 0.00 2.85
2891 3260 7.110155 TGACATCTGAAAAGACCTATTTACCC 58.890 38.462 0.00 0.00 0.00 3.69
2892 3261 6.424032 ACATCTGAAAAGACCTATTTACCCC 58.576 40.000 0.00 0.00 0.00 4.95
2893 3262 6.217693 ACATCTGAAAAGACCTATTTACCCCT 59.782 38.462 0.00 0.00 0.00 4.79
2894 3263 6.309389 TCTGAAAAGACCTATTTACCCCTC 57.691 41.667 0.00 0.00 0.00 4.30
2895 3264 5.788533 TCTGAAAAGACCTATTTACCCCTCA 59.211 40.000 0.00 0.00 0.00 3.86
2896 3265 6.447084 TCTGAAAAGACCTATTTACCCCTCAT 59.553 38.462 0.00 0.00 0.00 2.90
2897 3266 7.626084 TCTGAAAAGACCTATTTACCCCTCATA 59.374 37.037 0.00 0.00 0.00 2.15
2898 3267 8.344939 TGAAAAGACCTATTTACCCCTCATAT 57.655 34.615 0.00 0.00 0.00 1.78
2899 3268 8.787818 TGAAAAGACCTATTTACCCCTCATATT 58.212 33.333 0.00 0.00 0.00 1.28
2928 3297 9.859427 ATATGACCAAAAATTGTGTGTATTCAG 57.141 29.630 0.00 0.00 0.00 3.02
2929 3298 5.982516 TGACCAAAAATTGTGTGTATTCAGC 59.017 36.000 0.00 0.00 0.00 4.26
2930 3299 5.296748 ACCAAAAATTGTGTGTATTCAGCC 58.703 37.500 0.00 0.00 0.00 4.85
2931 3300 5.163364 ACCAAAAATTGTGTGTATTCAGCCA 60.163 36.000 0.00 0.00 0.00 4.75
2932 3301 5.933463 CCAAAAATTGTGTGTATTCAGCCAT 59.067 36.000 0.00 0.00 0.00 4.40
2933 3302 7.095910 CCAAAAATTGTGTGTATTCAGCCATA 58.904 34.615 0.00 0.00 0.00 2.74
2934 3303 7.276218 CCAAAAATTGTGTGTATTCAGCCATAG 59.724 37.037 0.00 0.00 0.00 2.23
2935 3304 7.701539 AAAATTGTGTGTATTCAGCCATAGA 57.298 32.000 0.00 0.00 0.00 1.98
2936 3305 6.932356 AATTGTGTGTATTCAGCCATAGAG 57.068 37.500 0.00 0.00 0.00 2.43
2937 3306 4.406648 TGTGTGTATTCAGCCATAGAGG 57.593 45.455 0.00 0.00 41.84 3.69
2938 3307 3.134623 TGTGTGTATTCAGCCATAGAGGG 59.865 47.826 0.00 0.00 38.09 4.30
2939 3308 3.388024 GTGTGTATTCAGCCATAGAGGGA 59.612 47.826 0.00 0.00 38.09 4.20
2940 3309 4.037222 TGTGTATTCAGCCATAGAGGGAA 58.963 43.478 0.00 0.00 38.09 3.97
2941 3310 4.141711 TGTGTATTCAGCCATAGAGGGAAC 60.142 45.833 0.00 0.00 38.09 3.62
2942 3311 2.918712 ATTCAGCCATAGAGGGAACG 57.081 50.000 0.00 0.00 38.09 3.95
2943 3312 0.830648 TTCAGCCATAGAGGGAACGG 59.169 55.000 0.00 0.00 38.09 4.44
2944 3313 0.032515 TCAGCCATAGAGGGAACGGA 60.033 55.000 0.00 0.00 38.09 4.69
2945 3314 0.105039 CAGCCATAGAGGGAACGGAC 59.895 60.000 0.00 0.00 38.09 4.79
2946 3315 0.325296 AGCCATAGAGGGAACGGACA 60.325 55.000 0.00 0.00 38.09 4.02
2947 3316 0.179081 GCCATAGAGGGAACGGACAC 60.179 60.000 0.00 0.00 38.09 3.67
2948 3317 1.486211 CCATAGAGGGAACGGACACT 58.514 55.000 0.00 0.00 0.00 3.55
2949 3318 1.831736 CCATAGAGGGAACGGACACTT 59.168 52.381 0.00 0.00 0.00 3.16
2950 3319 2.236395 CCATAGAGGGAACGGACACTTT 59.764 50.000 0.00 0.00 0.00 2.66
2951 3320 3.522553 CATAGAGGGAACGGACACTTTC 58.477 50.000 0.00 0.00 0.00 2.62
2952 3321 1.420430 AGAGGGAACGGACACTTTCA 58.580 50.000 0.00 0.00 0.00 2.69
2953 3322 1.766496 AGAGGGAACGGACACTTTCAA 59.234 47.619 0.00 0.00 0.00 2.69
2954 3323 2.171870 AGAGGGAACGGACACTTTCAAA 59.828 45.455 0.00 0.00 0.00 2.69
2955 3324 2.289820 GAGGGAACGGACACTTTCAAAC 59.710 50.000 0.00 0.00 0.00 2.93
2956 3325 2.018515 GGGAACGGACACTTTCAAACA 58.981 47.619 0.00 0.00 0.00 2.83
2957 3326 2.032924 GGGAACGGACACTTTCAAACAG 59.967 50.000 0.00 0.00 0.00 3.16
2958 3327 2.540973 GGAACGGACACTTTCAAACAGC 60.541 50.000 0.00 0.00 0.00 4.40
2959 3328 2.038387 ACGGACACTTTCAAACAGCT 57.962 45.000 0.00 0.00 0.00 4.24
2960 3329 2.365582 ACGGACACTTTCAAACAGCTT 58.634 42.857 0.00 0.00 0.00 3.74
2961 3330 2.097466 ACGGACACTTTCAAACAGCTTG 59.903 45.455 0.00 0.00 36.25 4.01
2962 3331 2.097466 CGGACACTTTCAAACAGCTTGT 59.903 45.455 0.00 0.00 36.34 3.16
2963 3332 3.438360 GGACACTTTCAAACAGCTTGTG 58.562 45.455 0.00 0.00 36.34 3.33
2964 3333 2.854185 GACACTTTCAAACAGCTTGTGC 59.146 45.455 0.00 0.00 36.34 4.57
2965 3334 1.847999 CACTTTCAAACAGCTTGTGCG 59.152 47.619 0.00 0.00 45.42 5.34
2966 3335 1.202290 ACTTTCAAACAGCTTGTGCGG 60.202 47.619 0.00 0.00 45.42 5.69
2967 3336 1.065401 CTTTCAAACAGCTTGTGCGGA 59.935 47.619 0.00 0.00 45.42 5.54
2968 3337 0.662619 TTCAAACAGCTTGTGCGGAG 59.337 50.000 0.00 0.00 45.42 4.63
2969 3338 1.785041 TCAAACAGCTTGTGCGGAGC 61.785 55.000 0.00 0.00 44.28 4.70
2982 3351 4.451150 GGAGCATCACGGTCGGCA 62.451 66.667 0.00 0.00 43.39 5.69
2983 3352 2.434185 GAGCATCACGGTCGGCAA 60.434 61.111 0.00 0.00 33.17 4.52
2984 3353 2.740714 GAGCATCACGGTCGGCAAC 61.741 63.158 0.00 0.00 33.17 4.17
3035 3404 3.160047 CGCCTGGCTCCTCTGGAT 61.160 66.667 17.92 0.00 0.00 3.41
3036 3405 2.509916 GCCTGGCTCCTCTGGATG 59.490 66.667 12.43 0.00 0.00 3.51
3037 3406 2.068821 GCCTGGCTCCTCTGGATGA 61.069 63.158 12.43 0.00 0.00 2.92
3038 3407 2.042404 GCCTGGCTCCTCTGGATGAG 62.042 65.000 12.43 0.00 42.30 2.90
3039 3408 0.398239 CCTGGCTCCTCTGGATGAGA 60.398 60.000 6.99 0.00 45.39 3.27
3040 3409 1.719529 CTGGCTCCTCTGGATGAGAT 58.280 55.000 6.99 0.00 45.39 2.75
3041 3410 1.345089 CTGGCTCCTCTGGATGAGATG 59.655 57.143 6.99 0.00 45.39 2.90
3042 3411 0.686224 GGCTCCTCTGGATGAGATGG 59.314 60.000 6.99 0.00 45.39 3.51
3043 3412 1.714541 GCTCCTCTGGATGAGATGGA 58.285 55.000 6.99 0.00 45.39 3.41
3044 3413 1.619827 GCTCCTCTGGATGAGATGGAG 59.380 57.143 6.99 0.00 45.39 3.86
3045 3414 2.961510 CTCCTCTGGATGAGATGGAGT 58.038 52.381 0.00 0.00 45.39 3.85
3046 3415 3.753519 GCTCCTCTGGATGAGATGGAGTA 60.754 52.174 0.00 0.00 45.39 2.59
3047 3416 3.826157 CTCCTCTGGATGAGATGGAGTAC 59.174 52.174 0.00 0.00 45.39 2.73
3048 3417 3.205282 TCCTCTGGATGAGATGGAGTACA 59.795 47.826 0.00 0.00 45.39 2.90
3049 3418 3.573538 CCTCTGGATGAGATGGAGTACAG 59.426 52.174 0.00 0.00 45.39 2.74
3050 3419 2.961741 TCTGGATGAGATGGAGTACAGC 59.038 50.000 0.00 0.00 35.17 4.40
3051 3420 2.697229 CTGGATGAGATGGAGTACAGCA 59.303 50.000 0.00 0.00 38.15 4.41
3052 3421 2.697229 TGGATGAGATGGAGTACAGCAG 59.303 50.000 0.00 0.00 38.15 4.24
3053 3422 2.547642 GGATGAGATGGAGTACAGCAGC 60.548 54.545 0.00 0.00 38.15 5.25
3054 3423 0.826715 TGAGATGGAGTACAGCAGCC 59.173 55.000 0.00 0.00 38.15 4.85
3055 3424 0.249238 GAGATGGAGTACAGCAGCCG 60.249 60.000 0.00 0.00 38.15 5.52
3056 3425 0.684479 AGATGGAGTACAGCAGCCGA 60.684 55.000 0.00 0.00 38.15 5.54
3057 3426 0.249238 GATGGAGTACAGCAGCCGAG 60.249 60.000 0.00 0.00 35.03 4.63
3058 3427 2.202810 GGAGTACAGCAGCCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
3059 3428 2.573869 GAGTACAGCAGCCGAGCA 59.426 61.111 0.00 0.00 36.85 4.26
3060 3429 1.518133 GAGTACAGCAGCCGAGCAG 60.518 63.158 0.00 0.00 36.85 4.24
3061 3430 2.219325 GAGTACAGCAGCCGAGCAGT 62.219 60.000 0.00 0.00 37.94 4.40
3062 3431 0.965866 AGTACAGCAGCCGAGCAGTA 60.966 55.000 0.00 0.00 35.73 2.74
3063 3432 0.802607 GTACAGCAGCCGAGCAGTAC 60.803 60.000 11.38 11.38 45.66 2.73
3064 3433 2.266376 TACAGCAGCCGAGCAGTACG 62.266 60.000 0.00 0.00 35.73 3.67
3065 3434 3.374402 AGCAGCCGAGCAGTACGT 61.374 61.111 0.00 0.00 36.85 3.57
3066 3435 3.181967 GCAGCCGAGCAGTACGTG 61.182 66.667 0.00 0.00 0.00 4.49
3067 3436 2.258591 CAGCCGAGCAGTACGTGT 59.741 61.111 0.00 0.00 0.00 4.49
3068 3437 2.088763 CAGCCGAGCAGTACGTGTG 61.089 63.158 0.00 0.00 0.00 3.82
3069 3438 2.049433 GCCGAGCAGTACGTGTGT 60.049 61.111 0.00 0.00 0.00 3.72
3070 3439 2.372690 GCCGAGCAGTACGTGTGTG 61.373 63.158 0.00 0.00 0.00 3.82
3071 3440 2.372690 CCGAGCAGTACGTGTGTGC 61.373 63.158 0.00 4.23 37.48 4.57
3073 3442 4.655527 AGCAGTACGTGTGTGCTC 57.344 55.556 13.53 0.00 44.28 4.26
3074 3443 1.371758 AGCAGTACGTGTGTGCTCG 60.372 57.895 13.53 0.00 44.28 5.03
3075 3444 1.660575 GCAGTACGTGTGTGCTCGT 60.661 57.895 0.00 0.00 45.16 4.18
3076 3445 1.606350 GCAGTACGTGTGTGCTCGTC 61.606 60.000 0.00 0.00 42.71 4.20
3077 3446 1.082300 AGTACGTGTGTGCTCGTCG 60.082 57.895 0.00 0.00 42.71 5.12
3078 3447 1.082561 GTACGTGTGTGCTCGTCGA 60.083 57.895 0.00 0.00 42.71 4.20
3079 3448 1.082561 TACGTGTGTGCTCGTCGAC 60.083 57.895 5.18 5.18 42.71 4.20
3080 3449 2.753237 TACGTGTGTGCTCGTCGACG 62.753 60.000 31.30 31.30 42.71 5.12
3089 3458 4.611961 TCGTCGACGAGTGAGGAT 57.388 55.556 34.97 0.00 44.22 3.24
3090 3459 2.087344 TCGTCGACGAGTGAGGATG 58.913 57.895 34.97 4.96 44.22 3.51
3091 3460 1.062685 CGTCGACGAGTGAGGATGG 59.937 63.158 33.35 0.00 43.02 3.51
3092 3461 1.433879 GTCGACGAGTGAGGATGGG 59.566 63.158 0.00 0.00 0.00 4.00
3093 3462 2.105128 CGACGAGTGAGGATGGGC 59.895 66.667 0.00 0.00 0.00 5.36
3094 3463 2.418910 CGACGAGTGAGGATGGGCT 61.419 63.158 0.00 0.00 0.00 5.19
3095 3464 1.901085 GACGAGTGAGGATGGGCTT 59.099 57.895 0.00 0.00 0.00 4.35
3096 3465 1.112113 GACGAGTGAGGATGGGCTTA 58.888 55.000 0.00 0.00 0.00 3.09
3097 3466 1.689273 GACGAGTGAGGATGGGCTTAT 59.311 52.381 0.00 0.00 0.00 1.73
3098 3467 1.414181 ACGAGTGAGGATGGGCTTATG 59.586 52.381 0.00 0.00 0.00 1.90
3099 3468 1.875576 CGAGTGAGGATGGGCTTATGC 60.876 57.143 0.00 0.00 38.76 3.14
3100 3469 0.107456 AGTGAGGATGGGCTTATGCG 59.893 55.000 0.00 0.00 40.82 4.73
3101 3470 0.179045 GTGAGGATGGGCTTATGCGT 60.179 55.000 0.00 0.00 40.82 5.24
3102 3471 0.179048 TGAGGATGGGCTTATGCGTG 60.179 55.000 0.00 0.00 40.82 5.34
3103 3472 0.106708 GAGGATGGGCTTATGCGTGA 59.893 55.000 0.00 0.00 40.82 4.35
3104 3473 0.179045 AGGATGGGCTTATGCGTGAC 60.179 55.000 0.00 0.00 40.82 3.67
3105 3474 0.463654 GGATGGGCTTATGCGTGACA 60.464 55.000 0.00 0.00 40.82 3.58
3106 3475 1.378531 GATGGGCTTATGCGTGACAA 58.621 50.000 0.00 0.00 40.82 3.18
3107 3476 1.064060 GATGGGCTTATGCGTGACAAC 59.936 52.381 0.00 0.00 40.82 3.32
3108 3477 0.250510 TGGGCTTATGCGTGACAACA 60.251 50.000 0.00 0.00 40.82 3.33
3109 3478 1.094785 GGGCTTATGCGTGACAACAT 58.905 50.000 0.00 0.00 40.82 2.71
3110 3479 1.472480 GGGCTTATGCGTGACAACATT 59.528 47.619 0.00 0.00 40.82 2.71
3111 3480 2.477863 GGGCTTATGCGTGACAACATTC 60.478 50.000 0.00 0.00 40.82 2.67
3112 3481 2.430956 GCTTATGCGTGACAACATTCG 58.569 47.619 0.00 0.00 0.00 3.34
3113 3482 2.159707 GCTTATGCGTGACAACATTCGT 60.160 45.455 0.00 0.00 0.00 3.85
3114 3483 3.407252 CTTATGCGTGACAACATTCGTG 58.593 45.455 0.00 0.00 0.00 4.35
3115 3484 1.507562 ATGCGTGACAACATTCGTGA 58.492 45.000 0.00 0.00 0.00 4.35
3116 3485 1.291132 TGCGTGACAACATTCGTGAA 58.709 45.000 0.00 0.00 0.00 3.18
3117 3486 1.260297 TGCGTGACAACATTCGTGAAG 59.740 47.619 0.00 0.00 0.00 3.02
3118 3487 1.525197 GCGTGACAACATTCGTGAAGA 59.475 47.619 0.00 0.00 0.00 2.87
3119 3488 2.157668 GCGTGACAACATTCGTGAAGAT 59.842 45.455 0.00 0.00 0.00 2.40
3120 3489 3.725356 CGTGACAACATTCGTGAAGATG 58.275 45.455 0.00 0.00 0.00 2.90
3121 3490 3.423515 CGTGACAACATTCGTGAAGATGG 60.424 47.826 0.00 0.00 0.00 3.51
3122 3491 3.073678 TGACAACATTCGTGAAGATGGG 58.926 45.455 0.00 0.00 0.00 4.00
3123 3492 3.074412 GACAACATTCGTGAAGATGGGT 58.926 45.455 0.00 0.00 0.00 4.51
3124 3493 3.074412 ACAACATTCGTGAAGATGGGTC 58.926 45.455 0.00 0.00 0.00 4.46
3125 3494 3.244561 ACAACATTCGTGAAGATGGGTCT 60.245 43.478 0.00 0.00 35.82 3.85
3126 3495 4.020573 ACAACATTCGTGAAGATGGGTCTA 60.021 41.667 0.00 0.00 33.30 2.59
3127 3496 5.118990 CAACATTCGTGAAGATGGGTCTAT 58.881 41.667 0.00 0.00 33.30 1.98
3128 3497 4.950050 ACATTCGTGAAGATGGGTCTATC 58.050 43.478 0.00 0.00 33.30 2.08
3129 3498 4.651503 ACATTCGTGAAGATGGGTCTATCT 59.348 41.667 0.00 0.00 39.03 1.98
3130 3499 4.920640 TTCGTGAAGATGGGTCTATCTC 57.079 45.455 0.00 0.00 36.42 2.75
3131 3500 3.223435 TCGTGAAGATGGGTCTATCTCC 58.777 50.000 0.00 0.00 36.42 3.71
3132 3501 3.117474 TCGTGAAGATGGGTCTATCTCCT 60.117 47.826 0.00 0.00 36.42 3.69
3133 3502 4.104261 TCGTGAAGATGGGTCTATCTCCTA 59.896 45.833 0.00 0.00 36.42 2.94
3134 3503 4.216687 CGTGAAGATGGGTCTATCTCCTAC 59.783 50.000 0.00 0.00 36.42 3.18
3135 3504 4.216687 GTGAAGATGGGTCTATCTCCTACG 59.783 50.000 0.00 0.00 36.42 3.51
3136 3505 3.443145 AGATGGGTCTATCTCCTACGG 57.557 52.381 0.00 0.00 31.97 4.02
3137 3506 1.819903 GATGGGTCTATCTCCTACGGC 59.180 57.143 0.00 0.00 0.00 5.68
3138 3507 0.554305 TGGGTCTATCTCCTACGGCA 59.446 55.000 0.00 0.00 0.00 5.69
3139 3508 1.063492 TGGGTCTATCTCCTACGGCAA 60.063 52.381 0.00 0.00 0.00 4.52
3140 3509 1.614413 GGGTCTATCTCCTACGGCAAG 59.386 57.143 0.00 0.00 0.00 4.01
3141 3510 1.000052 GGTCTATCTCCTACGGCAAGC 60.000 57.143 0.00 0.00 0.00 4.01
3142 3511 1.681793 GTCTATCTCCTACGGCAAGCA 59.318 52.381 0.00 0.00 0.00 3.91
3143 3512 1.957177 TCTATCTCCTACGGCAAGCAG 59.043 52.381 0.00 0.00 0.00 4.24
3144 3513 0.389391 TATCTCCTACGGCAAGCAGC 59.611 55.000 0.00 0.00 44.65 5.25
3145 3514 1.333636 ATCTCCTACGGCAAGCAGCT 61.334 55.000 0.00 0.00 44.79 4.24
3155 3524 2.843701 GGCAAGCAGCTGATACATACT 58.156 47.619 20.43 0.00 44.79 2.12
3156 3525 2.547211 GGCAAGCAGCTGATACATACTG 59.453 50.000 20.43 6.28 44.79 2.74
3157 3526 3.201290 GCAAGCAGCTGATACATACTGT 58.799 45.455 20.43 0.00 41.15 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.118371 GGATAGTTCCATGGGACGAACTT 60.118 47.826 17.87 2.12 44.90 2.66
132 133 5.282055 TGAGATGTCGCATTATCCTTTCT 57.718 39.130 0.00 0.00 0.00 2.52
211 213 0.034477 TTCCCGCCATTTTCTCCTCC 60.034 55.000 0.00 0.00 0.00 4.30
232 234 1.019278 CCGCCATACTGCAGTCGTTT 61.019 55.000 25.56 4.03 0.00 3.60
327 480 2.106683 GCCACCCGTTTCTCATCCG 61.107 63.158 0.00 0.00 0.00 4.18
362 544 5.280470 GCAACCCTTTCCCCTCAATATTTTT 60.280 40.000 0.00 0.00 0.00 1.94
463 661 0.323725 CTAATTGGCCTGCTGTGGGT 60.324 55.000 3.32 0.00 0.00 4.51
524 722 3.168528 ACCCACAACAGGCCGACT 61.169 61.111 0.00 0.00 0.00 4.18
525 723 2.668550 GACCCACAACAGGCCGAC 60.669 66.667 0.00 0.00 0.00 4.79
526 724 3.948719 GGACCCACAACAGGCCGA 61.949 66.667 0.00 0.00 0.00 5.54
527 725 3.953775 AGGACCCACAACAGGCCG 61.954 66.667 0.00 0.00 0.00 6.13
528 726 2.282462 CAGGACCCACAACAGGCC 60.282 66.667 0.00 0.00 0.00 5.19
529 727 1.600916 GACAGGACCCACAACAGGC 60.601 63.158 0.00 0.00 0.00 4.85
530 728 1.301716 CGACAGGACCCACAACAGG 60.302 63.158 0.00 0.00 0.00 4.00
531 729 4.361253 CGACAGGACCCACAACAG 57.639 61.111 0.00 0.00 0.00 3.16
896 1094 2.064573 GCAGGTGTGCGCTAATTTTT 57.935 45.000 9.73 0.00 40.71 1.94
897 1095 3.792716 GCAGGTGTGCGCTAATTTT 57.207 47.368 9.73 0.00 40.71 1.82
914 1112 0.743097 GGGGAATGCTGATGAGTTGC 59.257 55.000 0.00 0.00 0.00 4.17
2100 2423 2.290093 GCAAGCAGCATCATAGTCTTCC 59.710 50.000 0.00 0.00 44.79 3.46
2413 2757 8.388484 ACATAATAGGCTTGATCTCACAATTC 57.612 34.615 0.00 0.00 0.00 2.17
2449 2793 3.385111 GGTGATACCAACAACCAAACCAA 59.615 43.478 0.00 0.00 38.42 3.67
2498 2858 7.437862 GCTTTCTTCTATACTGAATGAGGACTG 59.562 40.741 0.00 0.00 0.00 3.51
2580 2940 1.141019 GCATCTGCACAATGGCCTG 59.859 57.895 3.32 0.00 41.59 4.85
2581 2941 3.612251 GCATCTGCACAATGGCCT 58.388 55.556 3.32 0.00 41.59 5.19
2626 2995 1.826385 AATGTACCAGGAGTGCAAGC 58.174 50.000 0.00 0.00 44.77 4.01
2627 2996 5.163622 CCATAAAATGTACCAGGAGTGCAAG 60.164 44.000 0.00 0.00 44.77 4.01
2661 3030 0.884704 GAACACTCCGCTGCTTCCAA 60.885 55.000 0.00 0.00 0.00 3.53
2697 3066 1.518367 TAGAGGATTGCCCCGGAAAT 58.482 50.000 0.73 0.00 34.66 2.17
2699 3068 1.420138 GATTAGAGGATTGCCCCGGAA 59.580 52.381 0.73 0.00 34.66 4.30
2700 3069 1.056660 GATTAGAGGATTGCCCCGGA 58.943 55.000 0.73 0.00 34.66 5.14
2703 3072 4.780021 TCTCATAGATTAGAGGATTGCCCC 59.220 45.833 0.00 0.00 34.66 5.80
2705 3074 6.849085 TCTCTCATAGATTAGAGGATTGCC 57.151 41.667 0.00 0.00 39.79 4.52
2706 3075 9.369904 GAATTCTCTCATAGATTAGAGGATTGC 57.630 37.037 10.66 2.28 44.55 3.56
2738 3107 8.874816 GGCAACAAATTTTAAGACTGTGTTTAA 58.125 29.630 0.00 0.00 0.00 1.52
2739 3108 8.254508 AGGCAACAAATTTTAAGACTGTGTTTA 58.745 29.630 0.00 0.00 41.41 2.01
2740 3109 7.102993 AGGCAACAAATTTTAAGACTGTGTTT 58.897 30.769 0.00 0.00 41.41 2.83
2741 3110 6.639563 AGGCAACAAATTTTAAGACTGTGTT 58.360 32.000 0.00 0.00 41.41 3.32
2742 3111 6.220726 AGGCAACAAATTTTAAGACTGTGT 57.779 33.333 0.00 0.00 41.41 3.72
2743 3112 8.816640 ATAAGGCAACAAATTTTAAGACTGTG 57.183 30.769 0.00 0.00 41.41 3.66
2744 3113 9.830975 AAATAAGGCAACAAATTTTAAGACTGT 57.169 25.926 0.00 0.00 41.41 3.55
2748 3117 9.823647 TGTCAAATAAGGCAACAAATTTTAAGA 57.176 25.926 0.00 0.00 41.41 2.10
2749 3118 9.862585 GTGTCAAATAAGGCAACAAATTTTAAG 57.137 29.630 0.00 0.00 41.41 1.85
2750 3119 9.606631 AGTGTCAAATAAGGCAACAAATTTTAA 57.393 25.926 0.00 0.00 41.41 1.52
2751 3120 9.039870 CAGTGTCAAATAAGGCAACAAATTTTA 57.960 29.630 0.00 0.00 41.41 1.52
2752 3121 7.768120 TCAGTGTCAAATAAGGCAACAAATTTT 59.232 29.630 0.00 0.00 41.41 1.82
2753 3122 7.271511 TCAGTGTCAAATAAGGCAACAAATTT 58.728 30.769 0.00 0.00 41.41 1.82
2754 3123 6.815089 TCAGTGTCAAATAAGGCAACAAATT 58.185 32.000 0.00 0.00 41.41 1.82
2755 3124 6.403866 TCAGTGTCAAATAAGGCAACAAAT 57.596 33.333 0.00 0.00 41.41 2.32
2756 3125 5.843673 TCAGTGTCAAATAAGGCAACAAA 57.156 34.783 0.00 0.00 41.41 2.83
2757 3126 5.843673 TTCAGTGTCAAATAAGGCAACAA 57.156 34.783 0.00 0.00 41.41 2.83
2758 3127 5.769662 AGATTCAGTGTCAAATAAGGCAACA 59.230 36.000 0.00 0.00 41.41 3.33
2759 3128 6.259550 AGATTCAGTGTCAAATAAGGCAAC 57.740 37.500 0.00 0.00 0.00 4.17
2760 3129 6.899393 AAGATTCAGTGTCAAATAAGGCAA 57.101 33.333 0.00 0.00 0.00 4.52
2761 3130 6.899393 AAAGATTCAGTGTCAAATAAGGCA 57.101 33.333 0.00 0.00 0.00 4.75
2762 3131 8.084684 AGAAAAAGATTCAGTGTCAAATAAGGC 58.915 33.333 0.00 0.00 0.00 4.35
2763 3132 9.617975 GAGAAAAAGATTCAGTGTCAAATAAGG 57.382 33.333 0.00 0.00 0.00 2.69
2767 3136 8.355913 GGAAGAGAAAAAGATTCAGTGTCAAAT 58.644 33.333 0.00 0.00 0.00 2.32
2768 3137 7.557719 AGGAAGAGAAAAAGATTCAGTGTCAAA 59.442 33.333 0.00 0.00 0.00 2.69
2769 3138 7.056635 AGGAAGAGAAAAAGATTCAGTGTCAA 58.943 34.615 0.00 0.00 0.00 3.18
2770 3139 6.595682 AGGAAGAGAAAAAGATTCAGTGTCA 58.404 36.000 0.00 0.00 0.00 3.58
2771 3140 7.503521 AAGGAAGAGAAAAAGATTCAGTGTC 57.496 36.000 0.00 0.00 0.00 3.67
2772 3141 9.579932 AATAAGGAAGAGAAAAAGATTCAGTGT 57.420 29.630 0.00 0.00 0.00 3.55
2780 3149 9.635404 TGGTGTTAAATAAGGAAGAGAAAAAGA 57.365 29.630 0.00 0.00 0.00 2.52
2783 3152 9.416284 ACTTGGTGTTAAATAAGGAAGAGAAAA 57.584 29.630 0.00 0.00 0.00 2.29
2784 3153 8.990163 ACTTGGTGTTAAATAAGGAAGAGAAA 57.010 30.769 0.00 0.00 0.00 2.52
2785 3154 8.437575 AGACTTGGTGTTAAATAAGGAAGAGAA 58.562 33.333 0.00 0.00 0.00 2.87
2786 3155 7.974504 AGACTTGGTGTTAAATAAGGAAGAGA 58.025 34.615 0.00 0.00 0.00 3.10
2787 3156 9.720769 TTAGACTTGGTGTTAAATAAGGAAGAG 57.279 33.333 0.00 0.00 0.00 2.85
2796 3165 9.869757 GGCATAAATTTAGACTTGGTGTTAAAT 57.130 29.630 3.94 0.00 0.00 1.40
2797 3166 8.308207 GGGCATAAATTTAGACTTGGTGTTAAA 58.692 33.333 3.94 0.00 0.00 1.52
2798 3167 7.672239 AGGGCATAAATTTAGACTTGGTGTTAA 59.328 33.333 3.94 0.00 0.00 2.01
2799 3168 7.179269 AGGGCATAAATTTAGACTTGGTGTTA 58.821 34.615 3.94 0.00 0.00 2.41
2800 3169 6.016555 AGGGCATAAATTTAGACTTGGTGTT 58.983 36.000 3.94 0.00 0.00 3.32
2801 3170 5.580022 AGGGCATAAATTTAGACTTGGTGT 58.420 37.500 3.94 0.00 0.00 4.16
2802 3171 6.530019 AAGGGCATAAATTTAGACTTGGTG 57.470 37.500 3.94 0.00 0.00 4.17
2803 3172 8.695456 CATAAAGGGCATAAATTTAGACTTGGT 58.305 33.333 3.94 0.00 0.00 3.67
2804 3173 8.912988 TCATAAAGGGCATAAATTTAGACTTGG 58.087 33.333 3.94 1.28 0.00 3.61
2805 3174 9.736023 GTCATAAAGGGCATAAATTTAGACTTG 57.264 33.333 3.94 0.00 0.00 3.16
2806 3175 9.474313 TGTCATAAAGGGCATAAATTTAGACTT 57.526 29.630 3.94 3.07 0.00 3.01
2807 3176 8.903820 GTGTCATAAAGGGCATAAATTTAGACT 58.096 33.333 3.94 0.00 0.00 3.24
2808 3177 8.903820 AGTGTCATAAAGGGCATAAATTTAGAC 58.096 33.333 3.94 2.72 0.00 2.59
2809 3178 9.474313 AAGTGTCATAAAGGGCATAAATTTAGA 57.526 29.630 3.94 0.00 0.00 2.10
2810 3179 9.736023 GAAGTGTCATAAAGGGCATAAATTTAG 57.264 33.333 3.94 0.00 0.00 1.85
2811 3180 8.691797 GGAAGTGTCATAAAGGGCATAAATTTA 58.308 33.333 0.00 0.00 0.00 1.40
2812 3181 7.555965 GGAAGTGTCATAAAGGGCATAAATTT 58.444 34.615 0.00 0.00 0.00 1.82
2813 3182 6.183360 CGGAAGTGTCATAAAGGGCATAAATT 60.183 38.462 0.00 0.00 0.00 1.82
2814 3183 5.299279 CGGAAGTGTCATAAAGGGCATAAAT 59.701 40.000 0.00 0.00 0.00 1.40
2815 3184 4.638421 CGGAAGTGTCATAAAGGGCATAAA 59.362 41.667 0.00 0.00 0.00 1.40
2816 3185 4.196193 CGGAAGTGTCATAAAGGGCATAA 58.804 43.478 0.00 0.00 0.00 1.90
2817 3186 3.199071 ACGGAAGTGTCATAAAGGGCATA 59.801 43.478 0.00 0.00 46.97 3.14
2818 3187 2.026262 ACGGAAGTGTCATAAAGGGCAT 60.026 45.455 0.00 0.00 46.97 4.40
2819 3188 1.349688 ACGGAAGTGTCATAAAGGGCA 59.650 47.619 0.00 0.00 46.97 5.36
2820 3189 2.109425 ACGGAAGTGTCATAAAGGGC 57.891 50.000 0.00 0.00 46.97 5.19
2833 3202 1.826385 AGGCTTCAAATGGACGGAAG 58.174 50.000 0.00 0.00 40.69 3.46
2834 3203 2.286365 AAGGCTTCAAATGGACGGAA 57.714 45.000 0.00 0.00 0.00 4.30
2835 3204 3.078837 GTTAAGGCTTCAAATGGACGGA 58.921 45.455 1.30 0.00 0.00 4.69
2836 3205 2.159572 CGTTAAGGCTTCAAATGGACGG 60.160 50.000 1.30 0.00 0.00 4.79
2837 3206 2.159572 CCGTTAAGGCTTCAAATGGACG 60.160 50.000 13.53 9.24 32.04 4.79
2838 3207 2.817844 ACCGTTAAGGCTTCAAATGGAC 59.182 45.455 22.11 4.64 46.52 4.02
2839 3208 2.817258 CACCGTTAAGGCTTCAAATGGA 59.183 45.455 22.11 0.00 46.52 3.41
2840 3209 2.556622 ACACCGTTAAGGCTTCAAATGG 59.443 45.455 16.14 16.14 46.52 3.16
2841 3210 3.915437 ACACCGTTAAGGCTTCAAATG 57.085 42.857 1.30 0.00 46.52 2.32
2842 3211 6.394025 TTTAACACCGTTAAGGCTTCAAAT 57.606 33.333 1.30 0.00 46.52 2.32
2843 3212 5.831702 TTTAACACCGTTAAGGCTTCAAA 57.168 34.783 1.30 0.00 46.52 2.69
2844 3213 5.531659 TCATTTAACACCGTTAAGGCTTCAA 59.468 36.000 1.30 0.00 46.52 2.69
2845 3214 5.049267 GTCATTTAACACCGTTAAGGCTTCA 60.049 40.000 1.30 0.00 46.52 3.02
2846 3215 5.049267 TGTCATTTAACACCGTTAAGGCTTC 60.049 40.000 1.30 0.00 46.52 3.86
2847 3216 4.822896 TGTCATTTAACACCGTTAAGGCTT 59.177 37.500 4.58 4.58 46.52 4.35
2848 3217 4.391155 TGTCATTTAACACCGTTAAGGCT 58.609 39.130 0.16 0.00 46.52 4.58
2849 3218 4.752661 TGTCATTTAACACCGTTAAGGC 57.247 40.909 0.16 0.00 46.52 4.35
2851 3220 7.359262 TCAGATGTCATTTAACACCGTTAAG 57.641 36.000 0.16 0.00 30.55 1.85
2852 3221 7.731882 TTCAGATGTCATTTAACACCGTTAA 57.268 32.000 0.00 0.00 30.55 2.01
2853 3222 7.731882 TTTCAGATGTCATTTAACACCGTTA 57.268 32.000 0.00 0.00 30.55 3.18
2854 3223 6.627395 TTTCAGATGTCATTTAACACCGTT 57.373 33.333 0.00 0.00 30.55 4.44
2855 3224 6.485313 TCTTTTCAGATGTCATTTAACACCGT 59.515 34.615 0.00 0.00 30.55 4.83
2856 3225 6.797033 GTCTTTTCAGATGTCATTTAACACCG 59.203 38.462 0.00 0.00 30.55 4.94
2857 3226 7.040409 AGGTCTTTTCAGATGTCATTTAACACC 60.040 37.037 0.00 0.00 30.55 4.16
2858 3227 7.875971 AGGTCTTTTCAGATGTCATTTAACAC 58.124 34.615 0.00 0.00 30.55 3.32
2859 3228 9.739276 ATAGGTCTTTTCAGATGTCATTTAACA 57.261 29.630 0.00 0.00 0.00 2.41
2864 3233 9.178758 GGTAAATAGGTCTTTTCAGATGTCATT 57.821 33.333 0.00 0.00 0.00 2.57
2865 3234 7.775561 GGGTAAATAGGTCTTTTCAGATGTCAT 59.224 37.037 0.00 0.00 0.00 3.06
2866 3235 7.110155 GGGTAAATAGGTCTTTTCAGATGTCA 58.890 38.462 0.00 0.00 0.00 3.58
2867 3236 6.542735 GGGGTAAATAGGTCTTTTCAGATGTC 59.457 42.308 0.00 0.00 0.00 3.06
2868 3237 6.217693 AGGGGTAAATAGGTCTTTTCAGATGT 59.782 38.462 0.00 0.00 0.00 3.06
2869 3238 6.663734 AGGGGTAAATAGGTCTTTTCAGATG 58.336 40.000 0.00 0.00 0.00 2.90
2870 3239 6.447084 TGAGGGGTAAATAGGTCTTTTCAGAT 59.553 38.462 0.00 0.00 0.00 2.90
2871 3240 5.788533 TGAGGGGTAAATAGGTCTTTTCAGA 59.211 40.000 0.00 0.00 0.00 3.27
2872 3241 6.062258 TGAGGGGTAAATAGGTCTTTTCAG 57.938 41.667 0.00 0.00 0.00 3.02
2873 3242 6.652205 ATGAGGGGTAAATAGGTCTTTTCA 57.348 37.500 0.00 0.00 0.00 2.69
2902 3271 9.859427 CTGAATACACACAATTTTTGGTCATAT 57.141 29.630 0.00 0.00 34.12 1.78
2903 3272 7.812191 GCTGAATACACACAATTTTTGGTCATA 59.188 33.333 0.00 0.00 34.12 2.15
2904 3273 6.646240 GCTGAATACACACAATTTTTGGTCAT 59.354 34.615 0.00 0.00 34.12 3.06
2905 3274 5.982516 GCTGAATACACACAATTTTTGGTCA 59.017 36.000 0.00 0.00 34.12 4.02
2906 3275 5.405269 GGCTGAATACACACAATTTTTGGTC 59.595 40.000 0.00 0.00 34.12 4.02
2907 3276 5.163364 TGGCTGAATACACACAATTTTTGGT 60.163 36.000 0.00 0.00 34.12 3.67
2908 3277 5.295950 TGGCTGAATACACACAATTTTTGG 58.704 37.500 0.00 0.00 34.12 3.28
2909 3278 8.028354 TCTATGGCTGAATACACACAATTTTTG 58.972 33.333 0.00 0.00 0.00 2.44
2910 3279 8.121305 TCTATGGCTGAATACACACAATTTTT 57.879 30.769 0.00 0.00 0.00 1.94
2911 3280 7.148018 CCTCTATGGCTGAATACACACAATTTT 60.148 37.037 0.00 0.00 0.00 1.82
2912 3281 6.319658 CCTCTATGGCTGAATACACACAATTT 59.680 38.462 0.00 0.00 0.00 1.82
2913 3282 5.824624 CCTCTATGGCTGAATACACACAATT 59.175 40.000 0.00 0.00 0.00 2.32
2914 3283 5.371526 CCTCTATGGCTGAATACACACAAT 58.628 41.667 0.00 0.00 0.00 2.71
2915 3284 4.384098 CCCTCTATGGCTGAATACACACAA 60.384 45.833 0.00 0.00 0.00 3.33
2916 3285 3.134623 CCCTCTATGGCTGAATACACACA 59.865 47.826 0.00 0.00 0.00 3.72
2917 3286 3.388024 TCCCTCTATGGCTGAATACACAC 59.612 47.826 0.00 0.00 0.00 3.82
2918 3287 3.653164 TCCCTCTATGGCTGAATACACA 58.347 45.455 0.00 0.00 0.00 3.72
2919 3288 4.381411 GTTCCCTCTATGGCTGAATACAC 58.619 47.826 0.00 0.00 0.00 2.90
2920 3289 3.069586 CGTTCCCTCTATGGCTGAATACA 59.930 47.826 0.00 0.00 0.00 2.29
2921 3290 3.555168 CCGTTCCCTCTATGGCTGAATAC 60.555 52.174 0.00 0.00 0.00 1.89
2922 3291 2.632996 CCGTTCCCTCTATGGCTGAATA 59.367 50.000 0.00 0.00 0.00 1.75
2923 3292 1.417890 CCGTTCCCTCTATGGCTGAAT 59.582 52.381 0.00 0.00 0.00 2.57
2924 3293 0.830648 CCGTTCCCTCTATGGCTGAA 59.169 55.000 0.00 0.00 0.00 3.02
2925 3294 0.032515 TCCGTTCCCTCTATGGCTGA 60.033 55.000 0.00 0.00 0.00 4.26
2926 3295 0.105039 GTCCGTTCCCTCTATGGCTG 59.895 60.000 0.00 0.00 0.00 4.85
2927 3296 0.325296 TGTCCGTTCCCTCTATGGCT 60.325 55.000 0.00 0.00 0.00 4.75
2928 3297 0.179081 GTGTCCGTTCCCTCTATGGC 60.179 60.000 0.00 0.00 0.00 4.40
2929 3298 1.486211 AGTGTCCGTTCCCTCTATGG 58.514 55.000 0.00 0.00 0.00 2.74
2930 3299 3.056107 TGAAAGTGTCCGTTCCCTCTATG 60.056 47.826 0.00 0.00 0.00 2.23
2931 3300 3.170717 TGAAAGTGTCCGTTCCCTCTAT 58.829 45.455 0.00 0.00 0.00 1.98
2932 3301 2.600790 TGAAAGTGTCCGTTCCCTCTA 58.399 47.619 0.00 0.00 0.00 2.43
2933 3302 1.420430 TGAAAGTGTCCGTTCCCTCT 58.580 50.000 0.00 0.00 0.00 3.69
2934 3303 2.249844 TTGAAAGTGTCCGTTCCCTC 57.750 50.000 0.00 0.00 0.00 4.30
2935 3304 2.294979 GTTTGAAAGTGTCCGTTCCCT 58.705 47.619 0.00 0.00 0.00 4.20
2936 3305 2.018515 TGTTTGAAAGTGTCCGTTCCC 58.981 47.619 0.00 0.00 0.00 3.97
2937 3306 2.540973 GCTGTTTGAAAGTGTCCGTTCC 60.541 50.000 0.00 0.00 0.00 3.62
2938 3307 2.354821 AGCTGTTTGAAAGTGTCCGTTC 59.645 45.455 0.00 0.00 0.00 3.95
2939 3308 2.365582 AGCTGTTTGAAAGTGTCCGTT 58.634 42.857 0.00 0.00 0.00 4.44
2940 3309 2.038387 AGCTGTTTGAAAGTGTCCGT 57.962 45.000 0.00 0.00 0.00 4.69
2941 3310 2.097466 ACAAGCTGTTTGAAAGTGTCCG 59.903 45.455 11.31 0.00 39.21 4.79
2942 3311 3.438360 CACAAGCTGTTTGAAAGTGTCC 58.562 45.455 11.31 0.00 39.21 4.02
2943 3312 2.854185 GCACAAGCTGTTTGAAAGTGTC 59.146 45.455 11.31 0.00 39.21 3.67
2944 3313 2.731968 CGCACAAGCTGTTTGAAAGTGT 60.732 45.455 11.31 0.00 39.21 3.55
2945 3314 1.847999 CGCACAAGCTGTTTGAAAGTG 59.152 47.619 11.31 0.19 39.21 3.16
2946 3315 1.202290 CCGCACAAGCTGTTTGAAAGT 60.202 47.619 11.31 0.00 39.21 2.66
2947 3316 1.065401 TCCGCACAAGCTGTTTGAAAG 59.935 47.619 11.31 2.18 39.21 2.62
2948 3317 1.065401 CTCCGCACAAGCTGTTTGAAA 59.935 47.619 11.31 0.00 39.21 2.69
2949 3318 0.662619 CTCCGCACAAGCTGTTTGAA 59.337 50.000 11.31 0.00 39.21 2.69
2950 3319 1.785041 GCTCCGCACAAGCTGTTTGA 61.785 55.000 11.31 0.00 39.21 2.69
2951 3320 1.370900 GCTCCGCACAAGCTGTTTG 60.371 57.895 2.50 2.50 42.68 2.93
2952 3321 1.174712 ATGCTCCGCACAAGCTGTTT 61.175 50.000 0.00 0.00 43.04 2.83
2953 3322 1.580845 GATGCTCCGCACAAGCTGTT 61.581 55.000 0.00 0.00 43.04 3.16
2954 3323 2.033141 ATGCTCCGCACAAGCTGT 59.967 55.556 0.00 0.00 43.04 4.40
2955 3324 2.036571 TGATGCTCCGCACAAGCTG 61.037 57.895 0.00 0.00 43.04 4.24
2956 3325 2.037136 GTGATGCTCCGCACAAGCT 61.037 57.895 3.94 0.00 43.04 3.74
2957 3326 2.482374 GTGATGCTCCGCACAAGC 59.518 61.111 0.00 0.00 43.04 4.01
2958 3327 2.743752 CCGTGATGCTCCGCACAAG 61.744 63.158 0.00 0.00 43.04 3.16
2959 3328 2.741985 CCGTGATGCTCCGCACAA 60.742 61.111 0.00 0.00 43.04 3.33
2960 3329 3.932580 GACCGTGATGCTCCGCACA 62.933 63.158 0.00 0.00 43.04 4.57
2961 3330 3.188786 GACCGTGATGCTCCGCAC 61.189 66.667 0.00 0.00 43.04 5.34
2962 3331 4.794439 CGACCGTGATGCTCCGCA 62.794 66.667 0.00 0.00 44.86 5.69
2965 3334 3.950794 TTGCCGACCGTGATGCTCC 62.951 63.158 0.00 0.00 0.00 4.70
2966 3335 2.434185 TTGCCGACCGTGATGCTC 60.434 61.111 0.00 0.00 0.00 4.26
2967 3336 2.742372 GTTGCCGACCGTGATGCT 60.742 61.111 0.00 0.00 0.00 3.79
2968 3337 4.147322 CGTTGCCGACCGTGATGC 62.147 66.667 0.00 0.00 35.63 3.91
2969 3338 2.431771 TCGTTGCCGACCGTGATG 60.432 61.111 0.00 0.00 38.40 3.07
2970 3339 2.126071 CTCGTTGCCGACCGTGAT 60.126 61.111 0.00 0.00 38.40 3.06
2971 3340 4.351938 CCTCGTTGCCGACCGTGA 62.352 66.667 0.00 0.00 38.40 4.35
2975 3344 4.681978 ACAGCCTCGTTGCCGACC 62.682 66.667 0.00 0.00 38.40 4.79
2976 3345 3.414700 CACAGCCTCGTTGCCGAC 61.415 66.667 0.00 0.00 38.40 4.79
3018 3387 3.160047 ATCCAGAGGAGCCAGGCG 61.160 66.667 5.55 0.00 34.05 5.52
3019 3388 2.042404 CTCATCCAGAGGAGCCAGGC 62.042 65.000 1.84 1.84 40.84 4.85
3020 3389 0.398239 TCTCATCCAGAGGAGCCAGG 60.398 60.000 4.47 0.00 44.81 4.45
3021 3390 1.345089 CATCTCATCCAGAGGAGCCAG 59.655 57.143 4.47 0.00 44.81 4.85
3022 3391 1.421480 CATCTCATCCAGAGGAGCCA 58.579 55.000 4.47 0.00 44.81 4.75
3023 3392 0.686224 CCATCTCATCCAGAGGAGCC 59.314 60.000 4.47 0.00 44.81 4.70
3024 3393 1.619827 CTCCATCTCATCCAGAGGAGC 59.380 57.143 4.47 0.00 44.81 4.70
3025 3394 2.961510 ACTCCATCTCATCCAGAGGAG 58.038 52.381 2.94 2.94 44.42 3.69
3026 3395 3.205282 TGTACTCCATCTCATCCAGAGGA 59.795 47.826 0.00 0.00 44.81 3.71
3027 3396 3.570540 TGTACTCCATCTCATCCAGAGG 58.429 50.000 0.00 0.00 44.81 3.69
3028 3397 3.005684 GCTGTACTCCATCTCATCCAGAG 59.994 52.174 0.00 0.00 46.14 3.35
3029 3398 2.961741 GCTGTACTCCATCTCATCCAGA 59.038 50.000 0.00 0.00 34.78 3.86
3030 3399 2.697229 TGCTGTACTCCATCTCATCCAG 59.303 50.000 0.00 0.00 0.00 3.86
3031 3400 2.697229 CTGCTGTACTCCATCTCATCCA 59.303 50.000 0.00 0.00 0.00 3.41
3032 3401 2.547642 GCTGCTGTACTCCATCTCATCC 60.548 54.545 0.00 0.00 0.00 3.51
3033 3402 2.547642 GGCTGCTGTACTCCATCTCATC 60.548 54.545 0.00 0.00 0.00 2.92
3034 3403 1.415659 GGCTGCTGTACTCCATCTCAT 59.584 52.381 0.00 0.00 0.00 2.90
3035 3404 0.826715 GGCTGCTGTACTCCATCTCA 59.173 55.000 0.00 0.00 0.00 3.27
3036 3405 0.249238 CGGCTGCTGTACTCCATCTC 60.249 60.000 0.00 0.00 0.00 2.75
3037 3406 0.684479 TCGGCTGCTGTACTCCATCT 60.684 55.000 8.55 0.00 0.00 2.90
3038 3407 0.249238 CTCGGCTGCTGTACTCCATC 60.249 60.000 8.55 0.00 0.00 3.51
3039 3408 1.819229 CTCGGCTGCTGTACTCCAT 59.181 57.895 8.55 0.00 0.00 3.41
3040 3409 3.006756 GCTCGGCTGCTGTACTCCA 62.007 63.158 8.55 0.00 0.00 3.86
3041 3410 2.202810 GCTCGGCTGCTGTACTCC 60.203 66.667 8.55 0.00 0.00 3.85
3042 3411 1.518133 CTGCTCGGCTGCTGTACTC 60.518 63.158 8.55 0.00 0.00 2.59
3043 3412 0.965866 TACTGCTCGGCTGCTGTACT 60.966 55.000 8.55 0.00 43.19 2.73
3044 3413 1.511305 TACTGCTCGGCTGCTGTAC 59.489 57.895 8.55 2.58 43.19 2.90
3045 3414 1.511305 GTACTGCTCGGCTGCTGTA 59.489 57.895 8.55 12.37 43.19 2.74
3046 3415 2.262915 GTACTGCTCGGCTGCTGT 59.737 61.111 8.55 13.90 44.90 4.40
3047 3416 2.882777 CGTACTGCTCGGCTGCTG 60.883 66.667 0.95 0.95 37.79 4.41
3048 3417 3.374402 ACGTACTGCTCGGCTGCT 61.374 61.111 0.00 0.00 0.00 4.24
3049 3418 3.181967 CACGTACTGCTCGGCTGC 61.182 66.667 0.00 0.00 0.00 5.25
3050 3419 2.088763 CACACGTACTGCTCGGCTG 61.089 63.158 0.00 0.00 0.00 4.85
3051 3420 2.258591 CACACGTACTGCTCGGCT 59.741 61.111 0.00 0.00 0.00 5.52
3052 3421 2.049433 ACACACGTACTGCTCGGC 60.049 61.111 0.00 0.00 0.00 5.54
3053 3422 2.372690 GCACACACGTACTGCTCGG 61.373 63.158 0.00 0.00 0.00 4.63
3054 3423 1.337817 GAGCACACACGTACTGCTCG 61.338 60.000 19.61 0.00 45.48 5.03
3055 3424 4.655527 AGCACACACGTACTGCTC 57.344 55.556 7.74 0.00 36.50 4.26
3056 3425 1.371758 CGAGCACACACGTACTGCT 60.372 57.895 12.27 12.27 44.04 4.24
3057 3426 1.606350 GACGAGCACACACGTACTGC 61.606 60.000 0.00 0.00 43.33 4.40
3058 3427 1.327988 CGACGAGCACACACGTACTG 61.328 60.000 0.00 0.00 43.33 2.74
3059 3428 1.082300 CGACGAGCACACACGTACT 60.082 57.895 0.00 0.00 43.33 2.73
3060 3429 1.082561 TCGACGAGCACACACGTAC 60.083 57.895 0.00 0.00 43.33 3.67
3061 3430 1.082561 GTCGACGAGCACACACGTA 60.083 57.895 0.00 0.00 43.33 3.57
3062 3431 2.353145 GTCGACGAGCACACACGT 60.353 61.111 0.00 0.00 46.03 4.49
3063 3432 3.450152 CGTCGACGAGCACACACG 61.450 66.667 33.35 1.15 43.02 4.49
3064 3433 2.051614 TCGTCGACGAGCACACAC 60.052 61.111 34.97 0.00 44.22 3.82
3073 3442 1.062685 CCATCCTCACTCGTCGACG 59.937 63.158 31.30 31.30 41.45 5.12
3074 3443 1.433879 CCCATCCTCACTCGTCGAC 59.566 63.158 5.18 5.18 0.00 4.20
3075 3444 2.415608 GCCCATCCTCACTCGTCGA 61.416 63.158 0.00 0.00 0.00 4.20
3076 3445 1.949847 AAGCCCATCCTCACTCGTCG 61.950 60.000 0.00 0.00 0.00 5.12
3077 3446 1.112113 TAAGCCCATCCTCACTCGTC 58.888 55.000 0.00 0.00 0.00 4.20
3078 3447 1.414181 CATAAGCCCATCCTCACTCGT 59.586 52.381 0.00 0.00 0.00 4.18
3079 3448 1.875576 GCATAAGCCCATCCTCACTCG 60.876 57.143 0.00 0.00 33.58 4.18
3080 3449 1.875576 CGCATAAGCCCATCCTCACTC 60.876 57.143 0.00 0.00 37.52 3.51
3081 3450 0.107456 CGCATAAGCCCATCCTCACT 59.893 55.000 0.00 0.00 37.52 3.41
3082 3451 0.179045 ACGCATAAGCCCATCCTCAC 60.179 55.000 0.00 0.00 37.52 3.51
3083 3452 0.179048 CACGCATAAGCCCATCCTCA 60.179 55.000 0.00 0.00 37.52 3.86
3084 3453 0.106708 TCACGCATAAGCCCATCCTC 59.893 55.000 0.00 0.00 37.52 3.71
3085 3454 0.179045 GTCACGCATAAGCCCATCCT 60.179 55.000 0.00 0.00 37.52 3.24
3086 3455 0.463654 TGTCACGCATAAGCCCATCC 60.464 55.000 0.00 0.00 37.52 3.51
3087 3456 1.064060 GTTGTCACGCATAAGCCCATC 59.936 52.381 0.00 0.00 37.52 3.51
3088 3457 1.094785 GTTGTCACGCATAAGCCCAT 58.905 50.000 0.00 0.00 37.52 4.00
3089 3458 0.250510 TGTTGTCACGCATAAGCCCA 60.251 50.000 0.00 0.00 37.52 5.36
3090 3459 1.094785 ATGTTGTCACGCATAAGCCC 58.905 50.000 0.00 0.00 37.52 5.19
3091 3460 2.785679 GAATGTTGTCACGCATAAGCC 58.214 47.619 0.00 0.00 37.52 4.35
3092 3461 2.159707 ACGAATGTTGTCACGCATAAGC 60.160 45.455 0.00 0.00 37.42 3.09
3093 3462 3.122780 TCACGAATGTTGTCACGCATAAG 59.877 43.478 0.00 0.00 0.00 1.73
3094 3463 3.060602 TCACGAATGTTGTCACGCATAA 58.939 40.909 0.00 0.00 0.00 1.90
3095 3464 2.678324 TCACGAATGTTGTCACGCATA 58.322 42.857 0.00 0.00 0.00 3.14
3096 3465 1.507562 TCACGAATGTTGTCACGCAT 58.492 45.000 0.00 0.00 0.00 4.73
3097 3466 1.260297 CTTCACGAATGTTGTCACGCA 59.740 47.619 0.00 0.00 0.00 5.24
3098 3467 1.525197 TCTTCACGAATGTTGTCACGC 59.475 47.619 0.00 0.00 0.00 5.34
3099 3468 3.423515 CCATCTTCACGAATGTTGTCACG 60.424 47.826 0.00 0.00 0.00 4.35
3100 3469 3.120199 CCCATCTTCACGAATGTTGTCAC 60.120 47.826 0.00 0.00 0.00 3.67
3101 3470 3.073678 CCCATCTTCACGAATGTTGTCA 58.926 45.455 0.00 0.00 0.00 3.58
3102 3471 3.074412 ACCCATCTTCACGAATGTTGTC 58.926 45.455 0.00 0.00 0.00 3.18
3103 3472 3.074412 GACCCATCTTCACGAATGTTGT 58.926 45.455 0.00 0.00 0.00 3.32
3104 3473 3.338249 AGACCCATCTTCACGAATGTTG 58.662 45.455 0.00 0.00 0.00 3.33
3105 3474 3.703001 AGACCCATCTTCACGAATGTT 57.297 42.857 0.00 0.00 0.00 2.71
3106 3475 4.651503 AGATAGACCCATCTTCACGAATGT 59.348 41.667 0.00 0.00 36.29 2.71
3107 3476 5.207110 AGATAGACCCATCTTCACGAATG 57.793 43.478 0.00 0.00 36.29 2.67
3108 3477 4.282195 GGAGATAGACCCATCTTCACGAAT 59.718 45.833 0.00 0.00 35.37 3.34
3109 3478 3.637229 GGAGATAGACCCATCTTCACGAA 59.363 47.826 0.00 0.00 35.37 3.85
3110 3479 3.117474 AGGAGATAGACCCATCTTCACGA 60.117 47.826 0.00 0.00 35.37 4.35
3111 3480 3.226777 AGGAGATAGACCCATCTTCACG 58.773 50.000 0.00 0.00 35.37 4.35
3112 3481 4.216687 CGTAGGAGATAGACCCATCTTCAC 59.783 50.000 0.00 0.00 35.37 3.18
3113 3482 4.399219 CGTAGGAGATAGACCCATCTTCA 58.601 47.826 0.00 0.00 35.37 3.02
3131 3500 1.212616 GTATCAGCTGCTTGCCGTAG 58.787 55.000 9.47 0.00 44.23 3.51
3132 3501 0.534873 TGTATCAGCTGCTTGCCGTA 59.465 50.000 9.47 0.00 44.23 4.02
3133 3502 0.107508 ATGTATCAGCTGCTTGCCGT 60.108 50.000 9.47 0.00 44.23 5.68
3134 3503 1.528586 GTATGTATCAGCTGCTTGCCG 59.471 52.381 9.47 0.00 44.23 5.69
3135 3504 2.547211 CAGTATGTATCAGCTGCTTGCC 59.453 50.000 9.47 0.00 44.23 4.52
3136 3505 3.874400 CAGTATGTATCAGCTGCTTGC 57.126 47.619 9.47 3.16 43.29 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.