Multiple sequence alignment - TraesCS5D01G249700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G249700 chr5D 100.000 4063 0 0 1 4063 356196519 356200581 0.000000e+00 7504.0
1 TraesCS5D01G249700 chr5D 76.338 355 70 10 1225 1566 495308797 495309150 1.160000e-40 178.0
2 TraesCS5D01G249700 chr5D 91.026 78 6 1 607 683 536713727 536713650 2.000000e-18 104.0
3 TraesCS5D01G249700 chr5D 89.130 46 5 0 1048 1093 64292430 64292385 1.580000e-04 58.4
4 TraesCS5D01G249700 chr5B 91.958 1828 90 20 2283 4063 421179650 421181467 0.000000e+00 2508.0
5 TraesCS5D01G249700 chr5B 93.487 1259 49 17 933 2166 421178402 421179652 0.000000e+00 1840.0
6 TraesCS5D01G249700 chr5B 86.611 239 24 6 3 235 421177806 421178042 1.450000e-64 257.0
7 TraesCS5D01G249700 chr5B 76.190 357 68 12 1225 1565 611953122 611953477 5.400000e-39 172.0
8 TraesCS5D01G249700 chr5B 86.885 122 10 2 2165 2285 571209382 571209266 9.160000e-27 132.0
9 TraesCS5D01G249700 chr5B 86.066 122 11 2 2165 2285 653800278 653800162 4.260000e-25 126.0
10 TraesCS5D01G249700 chr5A 94.975 1413 60 6 679 2090 457893667 457895069 0.000000e+00 2206.0
11 TraesCS5D01G249700 chr5A 90.786 1476 72 15 2466 3887 457895397 457896862 0.000000e+00 1914.0
12 TraesCS5D01G249700 chr5A 90.270 185 9 4 2283 2467 457895174 457895349 2.440000e-57 233.0
13 TraesCS5D01G249700 chr5A 73.830 577 115 25 1013 1566 619454355 619454918 3.200000e-46 196.0
14 TraesCS5D01G249700 chr5A 95.000 120 6 0 3944 4063 457899485 457899604 5.360000e-44 189.0
15 TraesCS5D01G249700 chr5A 73.077 364 80 16 1064 1418 667323625 667323979 3.320000e-21 113.0
16 TraesCS5D01G249700 chr5A 70.811 555 115 36 1075 1619 631859079 631858562 2.600000e-12 84.2
17 TraesCS5D01G249700 chr5A 92.308 39 3 0 1048 1086 54653199 54653237 5.670000e-04 56.5
18 TraesCS5D01G249700 chr4B 88.095 126 9 2 2161 2285 673201555 673201675 1.180000e-30 145.0
19 TraesCS5D01G249700 chr4B 73.077 364 80 16 1064 1418 621752158 621752512 3.320000e-21 113.0
20 TraesCS5D01G249700 chr6B 87.402 127 9 3 2165 2290 692579571 692579451 5.480000e-29 139.0
21 TraesCS5D01G249700 chr1A 86.400 125 11 2 2163 2286 543486442 543486323 9.160000e-27 132.0
22 TraesCS5D01G249700 chr2B 85.938 128 11 3 2165 2291 680200470 680200591 3.300000e-26 130.0
23 TraesCS5D01G249700 chr2B 88.542 96 6 4 593 683 281514250 281514155 1.190000e-20 111.0
24 TraesCS5D01G249700 chr2B 87.778 90 7 3 598 683 649906298 649906209 7.180000e-18 102.0
25 TraesCS5D01G249700 chr2B 79.675 123 13 10 570 683 603937341 603937460 1.210000e-10 78.7
26 TraesCS5D01G249700 chr2B 77.206 136 12 8 562 681 625492379 625492247 1.220000e-05 62.1
27 TraesCS5D01G249700 chr1B 86.290 124 11 3 2165 2287 551031882 551031764 3.300000e-26 130.0
28 TraesCS5D01G249700 chr1B 88.542 96 6 4 593 683 641630769 641630674 1.190000e-20 111.0
29 TraesCS5D01G249700 chr1B 87.500 96 7 4 593 683 86581352 86581257 5.550000e-19 106.0
30 TraesCS5D01G249700 chr3B 86.179 123 11 4 2165 2286 744209815 744209698 1.190000e-25 128.0
31 TraesCS5D01G249700 chr3B 85.366 123 12 2 2165 2286 651739725 651739842 5.510000e-24 122.0
32 TraesCS5D01G249700 chr3B 90.323 93 4 5 593 680 62307442 62307534 2.570000e-22 117.0
33 TraesCS5D01G249700 chr4A 91.011 89 5 2 598 683 175218724 175218812 2.570000e-22 117.0
34 TraesCS5D01G249700 chr6A 90.000 90 5 3 598 683 135929055 135929144 3.320000e-21 113.0
35 TraesCS5D01G249700 chr4D 87.654 81 8 2 1339 1418 486937243 486937322 4.320000e-15 93.5
36 TraesCS5D01G249700 chr2D 97.143 35 1 0 1495 1529 87806692 87806726 4.390000e-05 60.2
37 TraesCS5D01G249700 chr2D 77.419 93 18 3 1059 1150 462790432 462790342 7.000000e-03 52.8
38 TraesCS5D01G249700 chr2A 97.143 35 1 0 1495 1529 88281378 88281412 4.390000e-05 60.2
39 TraesCS5D01G249700 chrUn 100.000 28 0 0 567 594 272481469 272481442 7.000000e-03 52.8
40 TraesCS5D01G249700 chrUn 100.000 28 0 0 567 594 279591632 279591659 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G249700 chr5D 356196519 356200581 4062 False 7504.0 7504 100.000000 1 4063 1 chr5D.!!$F1 4062
1 TraesCS5D01G249700 chr5B 421177806 421181467 3661 False 1535.0 2508 90.685333 3 4063 3 chr5B.!!$F2 4060
2 TraesCS5D01G249700 chr5A 457893667 457899604 5937 False 1135.5 2206 92.757750 679 4063 4 chr5A.!!$F4 3384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 465 0.038618 TGATAGAGTGTGCGTGCGTT 60.039 50.0 0.0 0.0 0.0 4.84 F
460 467 0.038618 ATAGAGTGTGCGTGCGTTCA 60.039 50.0 0.0 0.0 0.0 3.18 F
462 469 0.038618 AGAGTGTGCGTGCGTTCATA 60.039 50.0 0.0 0.0 0.0 2.15 F
582 590 0.108472 CCGTTTTACTCCCTCCGTCC 60.108 60.0 0.0 0.0 0.0 4.79 F
1982 2005 0.250081 GGCCACCGATGAGATCTTCC 60.250 60.0 0.0 0.0 0.0 3.46 F
2179 2233 0.251297 TTTGTACTCCCTCCGTCCGA 60.251 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2316 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.0 0.00 2.12 R
2264 2318 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.0 0.00 1.40 R
2265 2319 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.0 0.00 2.17 R
2270 2324 0.535797 CAAAGTACTCCCTCCGTCCC 59.464 60.000 0.00 0.0 0.00 4.46 R
2847 2991 1.228245 AATCACTGTGCAACGCCCT 60.228 52.632 2.12 0.0 42.39 5.19 R
3316 3464 2.019249 TGCATCCTTACAATCAGCAGC 58.981 47.619 0.00 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.208259 CTTTGGCGCAAAGTGGTTTC 58.792 50.000 10.83 0.00 43.85 2.78
23 24 0.179097 TTTGGCGCAAAGTGGTTTCC 60.179 50.000 10.83 0.00 0.00 3.13
24 25 1.323271 TTGGCGCAAAGTGGTTTCCA 61.323 50.000 10.83 0.00 0.00 3.53
46 53 5.302568 CCACCAAATATATCACCTTGCACAT 59.697 40.000 0.00 0.00 0.00 3.21
52 59 7.750229 AATATATCACCTTGCACATAGTTGG 57.250 36.000 0.00 0.00 0.00 3.77
53 60 2.198827 TCACCTTGCACATAGTTGGG 57.801 50.000 0.00 0.00 0.00 4.12
60 67 2.187958 TGCACATAGTTGGGAGTAGCT 58.812 47.619 0.00 0.00 0.00 3.32
69 76 8.204836 ACATAGTTGGGAGTAGCTAATTACAAG 58.795 37.037 10.46 4.10 0.00 3.16
75 82 7.500992 TGGGAGTAGCTAATTACAAGAATGAG 58.499 38.462 0.00 0.00 0.00 2.90
81 88 9.974750 GTAGCTAATTACAAGAATGAGTTTGTC 57.025 33.333 0.00 0.00 38.41 3.18
83 90 9.944376 AGCTAATTACAAGAATGAGTTTGTCTA 57.056 29.630 0.00 0.00 38.41 2.59
96 103 8.653036 ATGAGTTTGTCTATAGGTCCCTATAC 57.347 38.462 8.67 4.59 39.65 1.47
117 124 2.026641 ACATTGCTACCATGCACCATC 58.973 47.619 0.00 0.00 43.20 3.51
122 129 1.439353 CTACCATGCACCATCACCGC 61.439 60.000 0.00 0.00 0.00 5.68
126 133 4.720902 TGCACCATCACCGCCCAG 62.721 66.667 0.00 0.00 0.00 4.45
135 142 1.599518 CACCGCCCAGCAAGTGTAA 60.600 57.895 0.00 0.00 30.89 2.41
139 146 2.297701 CCGCCCAGCAAGTGTAAATAT 58.702 47.619 0.00 0.00 0.00 1.28
148 155 6.254157 CCAGCAAGTGTAAATATGTTGATTGC 59.746 38.462 0.00 0.00 40.50 3.56
196 203 3.935203 CCTCGTGTGCATCTTGTTATCTT 59.065 43.478 0.00 0.00 0.00 2.40
198 205 5.446473 CCTCGTGTGCATCTTGTTATCTTTC 60.446 44.000 0.00 0.00 0.00 2.62
205 212 6.958193 GTGCATCTTGTTATCTTTCGAGAAAG 59.042 38.462 16.98 16.98 46.82 2.62
207 214 7.817478 TGCATCTTGTTATCTTTCGAGAAAGTA 59.183 33.333 20.81 12.17 45.88 2.24
239 246 8.355272 TGTTTATACGATCTAAATAAAGCGCA 57.645 30.769 11.47 0.00 0.00 6.09
240 247 8.484799 TGTTTATACGATCTAAATAAAGCGCAG 58.515 33.333 11.47 0.00 0.00 5.18
243 250 5.582439 ACGATCTAAATAAAGCGCAGATG 57.418 39.130 11.47 5.08 0.00 2.90
244 251 4.449068 ACGATCTAAATAAAGCGCAGATGG 59.551 41.667 11.47 10.94 0.00 3.51
246 253 5.050091 CGATCTAAATAAAGCGCAGATGGTT 60.050 40.000 11.47 0.00 0.00 3.67
247 254 6.145534 CGATCTAAATAAAGCGCAGATGGTTA 59.854 38.462 11.47 0.00 0.00 2.85
248 255 6.844696 TCTAAATAAAGCGCAGATGGTTAG 57.155 37.500 11.47 10.01 0.00 2.34
249 256 6.578944 TCTAAATAAAGCGCAGATGGTTAGA 58.421 36.000 11.47 12.17 0.00 2.10
250 257 7.217200 TCTAAATAAAGCGCAGATGGTTAGAT 58.783 34.615 11.47 0.00 0.00 1.98
251 258 6.699575 AAATAAAGCGCAGATGGTTAGATT 57.300 33.333 11.47 0.00 0.00 2.40
252 259 6.699575 AATAAAGCGCAGATGGTTAGATTT 57.300 33.333 11.47 0.00 0.00 2.17
253 260 4.361451 AAAGCGCAGATGGTTAGATTTG 57.639 40.909 11.47 0.00 0.00 2.32
254 261 2.991250 AGCGCAGATGGTTAGATTTGT 58.009 42.857 11.47 0.00 0.00 2.83
255 262 3.347216 AGCGCAGATGGTTAGATTTGTT 58.653 40.909 11.47 0.00 0.00 2.83
256 263 3.127548 AGCGCAGATGGTTAGATTTGTTG 59.872 43.478 11.47 0.00 0.00 3.33
257 264 3.119849 GCGCAGATGGTTAGATTTGTTGT 60.120 43.478 0.30 0.00 0.00 3.32
258 265 4.406069 CGCAGATGGTTAGATTTGTTGTG 58.594 43.478 0.00 0.00 0.00 3.33
259 266 4.672542 CGCAGATGGTTAGATTTGTTGTGG 60.673 45.833 0.00 0.00 0.00 4.17
260 267 4.218417 GCAGATGGTTAGATTTGTTGTGGT 59.782 41.667 0.00 0.00 0.00 4.16
261 268 5.414454 GCAGATGGTTAGATTTGTTGTGGTA 59.586 40.000 0.00 0.00 0.00 3.25
262 269 6.403636 GCAGATGGTTAGATTTGTTGTGGTAG 60.404 42.308 0.00 0.00 0.00 3.18
263 270 6.878923 CAGATGGTTAGATTTGTTGTGGTAGA 59.121 38.462 0.00 0.00 0.00 2.59
264 271 7.390440 CAGATGGTTAGATTTGTTGTGGTAGAA 59.610 37.037 0.00 0.00 0.00 2.10
265 272 6.870971 TGGTTAGATTTGTTGTGGTAGAAC 57.129 37.500 0.00 0.00 0.00 3.01
266 273 5.766174 TGGTTAGATTTGTTGTGGTAGAACC 59.234 40.000 0.00 0.00 39.22 3.62
282 289 7.179076 GGTAGAACCAACCTATTAGAGTTCA 57.821 40.000 13.46 3.59 38.42 3.18
283 290 7.618137 GGTAGAACCAACCTATTAGAGTTCAA 58.382 38.462 13.46 0.00 38.42 2.69
284 291 7.764901 GGTAGAACCAACCTATTAGAGTTCAAG 59.235 40.741 13.46 3.70 38.42 3.02
285 292 7.317722 AGAACCAACCTATTAGAGTTCAAGT 57.682 36.000 13.46 4.10 36.84 3.16
286 293 7.746703 AGAACCAACCTATTAGAGTTCAAGTT 58.253 34.615 13.46 9.32 36.84 2.66
287 294 7.878644 AGAACCAACCTATTAGAGTTCAAGTTC 59.121 37.037 13.46 14.12 36.84 3.01
288 295 7.317722 ACCAACCTATTAGAGTTCAAGTTCT 57.682 36.000 0.00 0.00 0.00 3.01
289 296 8.431910 ACCAACCTATTAGAGTTCAAGTTCTA 57.568 34.615 0.00 0.00 0.00 2.10
290 297 8.532819 ACCAACCTATTAGAGTTCAAGTTCTAG 58.467 37.037 0.00 0.00 0.00 2.43
291 298 8.750298 CCAACCTATTAGAGTTCAAGTTCTAGA 58.250 37.037 0.00 0.00 0.00 2.43
292 299 9.575783 CAACCTATTAGAGTTCAAGTTCTAGAC 57.424 37.037 0.00 0.00 0.00 2.59
293 300 9.536510 AACCTATTAGAGTTCAAGTTCTAGACT 57.463 33.333 0.00 0.00 41.47 3.24
303 310 3.851976 AGTTCTAGACTTGGCACTACG 57.148 47.619 0.00 0.00 33.92 3.51
304 311 3.418995 AGTTCTAGACTTGGCACTACGA 58.581 45.455 0.00 0.00 33.92 3.43
305 312 4.017808 AGTTCTAGACTTGGCACTACGAT 58.982 43.478 0.00 0.00 33.92 3.73
306 313 4.096682 AGTTCTAGACTTGGCACTACGATC 59.903 45.833 0.00 0.00 33.92 3.69
307 314 3.617284 TCTAGACTTGGCACTACGATCA 58.383 45.455 0.00 0.00 0.00 2.92
308 315 4.207955 TCTAGACTTGGCACTACGATCAT 58.792 43.478 0.00 0.00 0.00 2.45
309 316 5.374071 TCTAGACTTGGCACTACGATCATA 58.626 41.667 0.00 0.00 0.00 2.15
310 317 6.004574 TCTAGACTTGGCACTACGATCATAT 58.995 40.000 0.00 0.00 0.00 1.78
311 318 5.537300 AGACTTGGCACTACGATCATATT 57.463 39.130 0.00 0.00 0.00 1.28
312 319 5.918608 AGACTTGGCACTACGATCATATTT 58.081 37.500 0.00 0.00 0.00 1.40
313 320 6.349300 AGACTTGGCACTACGATCATATTTT 58.651 36.000 0.00 0.00 0.00 1.82
314 321 6.823689 AGACTTGGCACTACGATCATATTTTT 59.176 34.615 0.00 0.00 0.00 1.94
339 346 8.527567 TTAAAATTTATTTCAGACCTTTGGCG 57.472 30.769 0.00 0.00 0.00 5.69
340 347 5.722021 AATTTATTTCAGACCTTTGGCGT 57.278 34.783 0.00 0.00 0.00 5.68
341 348 5.722021 ATTTATTTCAGACCTTTGGCGTT 57.278 34.783 0.00 0.00 0.00 4.84
342 349 4.497473 TTATTTCAGACCTTTGGCGTTG 57.503 40.909 0.00 0.00 0.00 4.10
343 350 1.757682 TTTCAGACCTTTGGCGTTGT 58.242 45.000 0.00 0.00 0.00 3.32
344 351 2.623878 TTCAGACCTTTGGCGTTGTA 57.376 45.000 0.00 0.00 0.00 2.41
345 352 1.873698 TCAGACCTTTGGCGTTGTAC 58.126 50.000 0.00 0.00 0.00 2.90
346 353 0.511221 CAGACCTTTGGCGTTGTACG 59.489 55.000 0.00 0.00 45.88 3.67
347 354 0.105408 AGACCTTTGGCGTTGTACGT 59.895 50.000 0.00 0.00 44.73 3.57
348 355 0.939419 GACCTTTGGCGTTGTACGTT 59.061 50.000 0.00 0.00 44.73 3.99
349 356 0.939419 ACCTTTGGCGTTGTACGTTC 59.061 50.000 0.00 0.00 44.73 3.95
350 357 0.938713 CCTTTGGCGTTGTACGTTCA 59.061 50.000 0.00 0.00 44.73 3.18
351 358 1.070175 CCTTTGGCGTTGTACGTTCAG 60.070 52.381 0.00 0.00 44.73 3.02
352 359 0.305313 TTTGGCGTTGTACGTTCAGC 59.695 50.000 0.00 0.00 44.73 4.26
353 360 1.823260 TTGGCGTTGTACGTTCAGCG 61.823 55.000 23.16 23.16 44.73 5.18
354 361 2.468532 GCGTTGTACGTTCAGCGG 59.531 61.111 26.86 12.90 44.73 5.52
355 362 3.007070 GCGTTGTACGTTCAGCGGG 62.007 63.158 26.86 6.56 44.73 6.13
356 363 1.372004 CGTTGTACGTTCAGCGGGA 60.372 57.895 20.57 0.00 46.52 5.14
357 364 1.342082 CGTTGTACGTTCAGCGGGAG 61.342 60.000 20.57 0.00 46.52 4.30
358 365 1.012486 GTTGTACGTTCAGCGGGAGG 61.012 60.000 0.00 0.00 46.52 4.30
359 366 1.466025 TTGTACGTTCAGCGGGAGGT 61.466 55.000 0.00 0.00 46.52 3.85
368 375 2.377136 AGCGGGAGGTGACATTTCT 58.623 52.632 0.00 0.00 40.33 2.52
369 376 1.568504 AGCGGGAGGTGACATTTCTA 58.431 50.000 0.00 0.00 40.33 2.10
370 377 2.119495 AGCGGGAGGTGACATTTCTAT 58.881 47.619 0.00 0.00 40.33 1.98
371 378 2.103263 AGCGGGAGGTGACATTTCTATC 59.897 50.000 0.00 0.00 40.33 2.08
372 379 2.743938 CGGGAGGTGACATTTCTATCG 58.256 52.381 0.00 0.00 0.00 2.92
373 380 2.361119 CGGGAGGTGACATTTCTATCGA 59.639 50.000 0.00 0.00 0.00 3.59
374 381 3.181479 CGGGAGGTGACATTTCTATCGAA 60.181 47.826 0.00 0.00 0.00 3.71
375 382 4.679639 CGGGAGGTGACATTTCTATCGAAA 60.680 45.833 0.00 0.00 42.83 3.46
376 383 4.811557 GGGAGGTGACATTTCTATCGAAAG 59.188 45.833 0.00 0.00 42.01 2.62
377 384 5.420409 GGAGGTGACATTTCTATCGAAAGT 58.580 41.667 0.00 0.00 42.01 2.66
378 385 5.520649 GGAGGTGACATTTCTATCGAAAGTC 59.479 44.000 11.76 11.76 42.01 3.01
379 386 6.287589 AGGTGACATTTCTATCGAAAGTCT 57.712 37.500 16.06 0.00 42.01 3.24
380 387 6.102663 AGGTGACATTTCTATCGAAAGTCTG 58.897 40.000 16.06 6.90 42.01 3.51
381 388 5.869888 GGTGACATTTCTATCGAAAGTCTGT 59.130 40.000 16.06 9.17 42.01 3.41
382 389 6.183360 GGTGACATTTCTATCGAAAGTCTGTG 60.183 42.308 16.06 6.40 42.01 3.66
383 390 5.869344 TGACATTTCTATCGAAAGTCTGTGG 59.131 40.000 16.06 0.00 42.01 4.17
384 391 5.794894 ACATTTCTATCGAAAGTCTGTGGT 58.205 37.500 0.00 0.00 42.01 4.16
385 392 5.639506 ACATTTCTATCGAAAGTCTGTGGTG 59.360 40.000 0.00 0.00 42.01 4.17
386 393 5.462530 TTTCTATCGAAAGTCTGTGGTGA 57.537 39.130 0.00 0.00 34.35 4.02
387 394 5.462530 TTCTATCGAAAGTCTGTGGTGAA 57.537 39.130 0.00 0.00 0.00 3.18
388 395 5.661056 TCTATCGAAAGTCTGTGGTGAAT 57.339 39.130 0.00 0.00 0.00 2.57
389 396 6.037786 TCTATCGAAAGTCTGTGGTGAATT 57.962 37.500 0.00 0.00 0.00 2.17
390 397 6.464222 TCTATCGAAAGTCTGTGGTGAATTT 58.536 36.000 0.00 0.00 37.02 1.82
391 398 7.608153 TCTATCGAAAGTCTGTGGTGAATTTA 58.392 34.615 0.00 0.00 34.93 1.40
392 399 8.258007 TCTATCGAAAGTCTGTGGTGAATTTAT 58.742 33.333 0.00 0.00 34.93 1.40
393 400 6.721571 TCGAAAGTCTGTGGTGAATTTATC 57.278 37.500 0.00 0.00 34.93 1.75
394 401 6.464222 TCGAAAGTCTGTGGTGAATTTATCT 58.536 36.000 0.00 0.00 34.93 1.98
395 402 7.608153 TCGAAAGTCTGTGGTGAATTTATCTA 58.392 34.615 0.00 0.00 34.93 1.98
396 403 7.544566 TCGAAAGTCTGTGGTGAATTTATCTAC 59.455 37.037 0.00 0.00 34.93 2.59
397 404 7.201530 CGAAAGTCTGTGGTGAATTTATCTACC 60.202 40.741 0.00 0.00 34.93 3.18
398 405 6.875972 AGTCTGTGGTGAATTTATCTACCT 57.124 37.500 0.00 0.00 33.17 3.08
399 406 6.879400 AGTCTGTGGTGAATTTATCTACCTC 58.121 40.000 0.00 0.00 33.17 3.85
400 407 6.440647 AGTCTGTGGTGAATTTATCTACCTCA 59.559 38.462 0.00 0.00 34.53 3.86
401 408 7.038302 AGTCTGTGGTGAATTTATCTACCTCAA 60.038 37.037 0.00 0.00 34.91 3.02
402 409 7.064728 GTCTGTGGTGAATTTATCTACCTCAAC 59.935 40.741 0.00 0.00 34.91 3.18
403 410 6.774673 TGTGGTGAATTTATCTACCTCAACA 58.225 36.000 0.00 0.00 33.65 3.33
404 411 7.402054 TGTGGTGAATTTATCTACCTCAACAT 58.598 34.615 0.00 0.00 36.22 2.71
405 412 7.336679 TGTGGTGAATTTATCTACCTCAACATG 59.663 37.037 0.00 0.00 36.22 3.21
406 413 7.552687 GTGGTGAATTTATCTACCTCAACATGA 59.447 37.037 0.00 0.00 36.22 3.07
407 414 8.274322 TGGTGAATTTATCTACCTCAACATGAT 58.726 33.333 0.00 0.00 33.17 2.45
408 415 8.562892 GGTGAATTTATCTACCTCAACATGATG 58.437 37.037 0.00 0.00 0.00 3.07
409 416 9.113838 GTGAATTTATCTACCTCAACATGATGT 57.886 33.333 0.00 0.00 0.00 3.06
410 417 9.112725 TGAATTTATCTACCTCAACATGATGTG 57.887 33.333 0.00 0.00 0.00 3.21
411 418 6.925610 TTTATCTACCTCAACATGATGTGC 57.074 37.500 0.00 0.00 0.00 4.57
412 419 3.266510 TCTACCTCAACATGATGTGCC 57.733 47.619 0.00 0.00 0.00 5.01
413 420 2.571202 TCTACCTCAACATGATGTGCCA 59.429 45.455 0.00 0.00 0.00 4.92
414 421 1.830279 ACCTCAACATGATGTGCCAG 58.170 50.000 0.00 0.00 0.00 4.85
415 422 0.454600 CCTCAACATGATGTGCCAGC 59.545 55.000 0.00 0.00 0.00 4.85
416 423 1.460504 CTCAACATGATGTGCCAGCT 58.539 50.000 0.00 0.00 0.00 4.24
417 424 1.400846 CTCAACATGATGTGCCAGCTC 59.599 52.381 0.00 0.00 0.00 4.09
418 425 1.170442 CAACATGATGTGCCAGCTCA 58.830 50.000 0.00 0.00 0.00 4.26
419 426 1.132453 CAACATGATGTGCCAGCTCAG 59.868 52.381 0.00 0.00 0.00 3.35
420 427 0.327259 ACATGATGTGCCAGCTCAGT 59.673 50.000 0.00 0.00 0.00 3.41
421 428 1.015109 CATGATGTGCCAGCTCAGTC 58.985 55.000 0.65 0.46 0.00 3.51
422 429 0.910338 ATGATGTGCCAGCTCAGTCT 59.090 50.000 0.65 0.00 0.00 3.24
423 430 0.689055 TGATGTGCCAGCTCAGTCTT 59.311 50.000 0.65 0.00 0.00 3.01
424 431 1.072806 TGATGTGCCAGCTCAGTCTTT 59.927 47.619 0.65 0.00 0.00 2.52
425 432 1.736681 GATGTGCCAGCTCAGTCTTTC 59.263 52.381 0.65 0.00 0.00 2.62
426 433 0.601046 TGTGCCAGCTCAGTCTTTCG 60.601 55.000 0.00 0.00 0.00 3.46
427 434 0.319900 GTGCCAGCTCAGTCTTTCGA 60.320 55.000 0.00 0.00 0.00 3.71
428 435 0.392706 TGCCAGCTCAGTCTTTCGAA 59.607 50.000 0.00 0.00 0.00 3.71
429 436 1.202639 TGCCAGCTCAGTCTTTCGAAA 60.203 47.619 10.71 10.71 0.00 3.46
430 437 2.079925 GCCAGCTCAGTCTTTCGAAAT 58.920 47.619 11.70 0.00 0.00 2.17
431 438 2.485814 GCCAGCTCAGTCTTTCGAAATT 59.514 45.455 11.70 0.00 0.00 1.82
432 439 3.669023 GCCAGCTCAGTCTTTCGAAATTG 60.669 47.826 11.70 10.41 0.00 2.32
433 440 3.486584 CAGCTCAGTCTTTCGAAATTGC 58.513 45.455 11.70 9.36 0.00 3.56
434 441 3.188048 CAGCTCAGTCTTTCGAAATTGCT 59.812 43.478 11.70 11.27 0.00 3.91
435 442 3.434984 AGCTCAGTCTTTCGAAATTGCTC 59.565 43.478 11.70 5.93 0.00 4.26
436 443 3.187227 GCTCAGTCTTTCGAAATTGCTCA 59.813 43.478 11.70 0.00 0.00 4.26
437 444 4.142730 GCTCAGTCTTTCGAAATTGCTCAT 60.143 41.667 11.70 0.00 0.00 2.90
438 445 5.063944 GCTCAGTCTTTCGAAATTGCTCATA 59.936 40.000 11.70 0.00 0.00 2.15
439 446 6.238320 GCTCAGTCTTTCGAAATTGCTCATAT 60.238 38.462 11.70 0.00 0.00 1.78
440 447 7.008440 TCAGTCTTTCGAAATTGCTCATATG 57.992 36.000 11.70 0.00 0.00 1.78
441 448 6.818142 TCAGTCTTTCGAAATTGCTCATATGA 59.182 34.615 11.70 5.07 0.00 2.15
442 449 7.496920 TCAGTCTTTCGAAATTGCTCATATGAT 59.503 33.333 11.70 0.00 0.00 2.45
443 450 8.768019 CAGTCTTTCGAAATTGCTCATATGATA 58.232 33.333 11.70 0.00 0.00 2.15
444 451 8.986847 AGTCTTTCGAAATTGCTCATATGATAG 58.013 33.333 11.70 0.00 0.00 2.08
445 452 8.982685 GTCTTTCGAAATTGCTCATATGATAGA 58.017 33.333 11.70 0.00 0.00 1.98
446 453 9.201127 TCTTTCGAAATTGCTCATATGATAGAG 57.799 33.333 11.70 0.00 35.01 2.43
447 454 8.893219 TTTCGAAATTGCTCATATGATAGAGT 57.107 30.769 6.47 0.00 34.39 3.24
448 455 7.880059 TCGAAATTGCTCATATGATAGAGTG 57.120 36.000 5.72 0.00 34.39 3.51
449 456 7.436933 TCGAAATTGCTCATATGATAGAGTGT 58.563 34.615 5.72 0.00 34.39 3.55
450 457 7.383300 TCGAAATTGCTCATATGATAGAGTGTG 59.617 37.037 5.72 0.00 34.39 3.82
451 458 6.798315 AATTGCTCATATGATAGAGTGTGC 57.202 37.500 5.72 4.19 34.39 4.57
452 459 3.905784 TGCTCATATGATAGAGTGTGCG 58.094 45.455 5.72 0.00 34.75 5.34
453 460 3.319122 TGCTCATATGATAGAGTGTGCGT 59.681 43.478 5.72 0.00 34.75 5.24
454 461 3.672397 GCTCATATGATAGAGTGTGCGTG 59.328 47.826 5.72 0.00 34.39 5.34
455 462 3.642705 TCATATGATAGAGTGTGCGTGC 58.357 45.455 0.00 0.00 0.00 5.34
456 463 2.119671 TATGATAGAGTGTGCGTGCG 57.880 50.000 0.00 0.00 0.00 5.34
457 464 0.173481 ATGATAGAGTGTGCGTGCGT 59.827 50.000 0.00 0.00 0.00 5.24
458 465 0.038618 TGATAGAGTGTGCGTGCGTT 60.039 50.000 0.00 0.00 0.00 4.84
459 466 0.640768 GATAGAGTGTGCGTGCGTTC 59.359 55.000 0.00 0.00 0.00 3.95
460 467 0.038618 ATAGAGTGTGCGTGCGTTCA 60.039 50.000 0.00 0.00 0.00 3.18
461 468 0.038618 TAGAGTGTGCGTGCGTTCAT 60.039 50.000 0.00 0.00 0.00 2.57
462 469 0.038618 AGAGTGTGCGTGCGTTCATA 60.039 50.000 0.00 0.00 0.00 2.15
463 470 0.999406 GAGTGTGCGTGCGTTCATAT 59.001 50.000 0.00 0.00 0.00 1.78
464 471 0.721154 AGTGTGCGTGCGTTCATATG 59.279 50.000 0.00 0.00 0.00 1.78
465 472 0.247655 GTGTGCGTGCGTTCATATGG 60.248 55.000 2.13 0.00 0.00 2.74
466 473 1.351707 GTGCGTGCGTTCATATGGG 59.648 57.895 2.13 0.00 0.00 4.00
467 474 1.078778 TGCGTGCGTTCATATGGGT 60.079 52.632 2.13 0.00 0.00 4.51
468 475 1.351707 GCGTGCGTTCATATGGGTG 59.648 57.895 2.13 0.00 0.00 4.61
469 476 1.087202 GCGTGCGTTCATATGGGTGA 61.087 55.000 2.13 0.00 0.00 4.02
470 477 1.364721 CGTGCGTTCATATGGGTGAA 58.635 50.000 2.13 0.00 35.84 3.18
471 478 1.939934 CGTGCGTTCATATGGGTGAAT 59.060 47.619 2.13 0.00 39.99 2.57
472 479 3.127589 CGTGCGTTCATATGGGTGAATA 58.872 45.455 2.13 0.00 39.99 1.75
473 480 3.745975 CGTGCGTTCATATGGGTGAATAT 59.254 43.478 2.13 0.00 39.99 1.28
474 481 4.926832 CGTGCGTTCATATGGGTGAATATA 59.073 41.667 2.13 0.00 39.99 0.86
475 482 5.580691 CGTGCGTTCATATGGGTGAATATAT 59.419 40.000 2.13 0.00 39.99 0.86
476 483 6.754675 CGTGCGTTCATATGGGTGAATATATA 59.245 38.462 2.13 0.00 39.99 0.86
477 484 7.438160 CGTGCGTTCATATGGGTGAATATATAT 59.562 37.037 2.13 0.00 39.99 0.86
478 485 8.551205 GTGCGTTCATATGGGTGAATATATATG 58.449 37.037 2.13 0.00 39.99 1.78
479 486 7.226523 TGCGTTCATATGGGTGAATATATATGC 59.773 37.037 2.13 0.00 39.99 3.14
480 487 7.226523 GCGTTCATATGGGTGAATATATATGCA 59.773 37.037 2.13 0.00 39.99 3.96
481 488 9.276590 CGTTCATATGGGTGAATATATATGCAT 57.723 33.333 6.68 3.79 39.99 3.96
488 495 9.710900 ATGGGTGAATATATATGCATATGTACG 57.289 33.333 26.21 0.00 0.00 3.67
489 496 8.919145 TGGGTGAATATATATGCATATGTACGA 58.081 33.333 26.21 8.83 0.00 3.43
490 497 9.411801 GGGTGAATATATATGCATATGTACGAG 57.588 37.037 26.21 0.00 0.00 4.18
491 498 8.916654 GGTGAATATATATGCATATGTACGAGC 58.083 37.037 26.21 16.35 0.00 5.03
492 499 8.630840 GTGAATATATATGCATATGTACGAGCG 58.369 37.037 26.21 0.00 0.00 5.03
493 500 8.349983 TGAATATATATGCATATGTACGAGCGT 58.650 33.333 26.21 7.63 0.00 5.07
494 501 8.729529 AATATATATGCATATGTACGAGCGTC 57.270 34.615 26.21 0.00 0.00 5.19
495 502 4.703645 ATATGCATATGTACGAGCGTCT 57.296 40.909 18.45 0.00 0.00 4.18
496 503 2.119671 TGCATATGTACGAGCGTCTG 57.880 50.000 4.29 0.00 0.00 3.51
497 504 1.404035 TGCATATGTACGAGCGTCTGT 59.596 47.619 4.29 0.00 0.00 3.41
498 505 1.781429 GCATATGTACGAGCGTCTGTG 59.219 52.381 4.29 0.00 0.00 3.66
499 506 2.794981 GCATATGTACGAGCGTCTGTGT 60.795 50.000 4.29 0.00 0.00 3.72
500 507 3.547413 GCATATGTACGAGCGTCTGTGTA 60.547 47.826 4.29 0.00 0.00 2.90
501 508 4.594136 CATATGTACGAGCGTCTGTGTAA 58.406 43.478 0.00 0.00 0.00 2.41
502 509 3.564235 ATGTACGAGCGTCTGTGTAAA 57.436 42.857 0.00 0.00 0.00 2.01
505 512 3.486841 TGTACGAGCGTCTGTGTAAAAAC 59.513 43.478 0.00 0.00 0.00 2.43
508 515 3.371591 ACGAGCGTCTGTGTAAAAACAAA 59.628 39.130 0.00 0.00 0.00 2.83
521 528 9.737427 TGTGTAAAAACAAATATGTGATTTCGT 57.263 25.926 0.00 0.00 40.46 3.85
545 552 6.534475 AAGAATGGGTAGTTACGTGACATA 57.466 37.500 13.41 0.00 0.00 2.29
552 559 8.009622 TGGGTAGTTACGTGACATATGAAATA 57.990 34.615 13.41 0.00 0.00 1.40
553 560 8.644216 TGGGTAGTTACGTGACATATGAAATAT 58.356 33.333 13.41 0.00 41.02 1.28
563 570 8.736742 CGTGACATATGAAATATTGTGCTTTTC 58.263 33.333 10.38 0.00 37.44 2.29
564 571 9.023967 GTGACATATGAAATATTGTGCTTTTCC 57.976 33.333 10.38 0.00 37.44 3.13
575 583 2.619646 TGTGCTTTTCCGTTTTACTCCC 59.380 45.455 0.00 0.00 0.00 4.30
579 587 2.460757 TTTCCGTTTTACTCCCTCCG 57.539 50.000 0.00 0.00 0.00 4.63
581 589 0.890683 TCCGTTTTACTCCCTCCGTC 59.109 55.000 0.00 0.00 0.00 4.79
582 590 0.108472 CCGTTTTACTCCCTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
590 598 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
591 599 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
592 600 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
594 602 2.752903 CCCTCCGTCCAAAAATACTTGG 59.247 50.000 0.00 0.00 46.27 3.61
613 621 7.997773 ACTTGGATAAAAAGGGTTCTAGAAC 57.002 36.000 24.73 24.73 40.45 3.01
614 622 7.756614 ACTTGGATAAAAAGGGTTCTAGAACT 58.243 34.615 29.66 14.94 40.94 3.01
615 623 8.887393 ACTTGGATAAAAAGGGTTCTAGAACTA 58.113 33.333 29.66 16.43 40.94 2.24
616 624 9.734984 CTTGGATAAAAAGGGTTCTAGAACTAA 57.265 33.333 29.66 11.76 40.94 2.24
623 631 9.565090 AAAAAGGGTTCTAGAACTAAAATACGT 57.435 29.630 29.66 13.46 40.94 3.57
624 632 9.565090 AAAAGGGTTCTAGAACTAAAATACGTT 57.435 29.630 29.66 17.61 40.94 3.99
625 633 9.565090 AAAGGGTTCTAGAACTAAAATACGTTT 57.435 29.630 29.66 21.21 40.94 3.60
669 677 9.638239 TTTATTTTGATGCAAGTATTTCCAGAC 57.362 29.630 0.00 0.00 0.00 3.51
670 678 4.944962 TTGATGCAAGTATTTCCAGACG 57.055 40.909 0.00 0.00 0.00 4.18
671 679 3.270027 TGATGCAAGTATTTCCAGACGG 58.730 45.455 0.00 0.00 0.00 4.79
672 680 3.055458 TGATGCAAGTATTTCCAGACGGA 60.055 43.478 0.00 0.00 40.60 4.69
673 681 2.972625 TGCAAGTATTTCCAGACGGAG 58.027 47.619 0.00 0.00 44.10 4.63
674 682 2.280628 GCAAGTATTTCCAGACGGAGG 58.719 52.381 0.00 0.00 44.10 4.30
709 717 4.585879 AGTTGTAGCCGGTGATTTTACAT 58.414 39.130 1.90 0.00 0.00 2.29
714 722 6.383415 TGTAGCCGGTGATTTTACATTTTTC 58.617 36.000 1.90 0.00 0.00 2.29
723 744 7.333423 GGTGATTTTACATTTTTCCTAAAGGCC 59.667 37.037 0.00 0.00 34.44 5.19
743 764 3.784338 CCATTTTCCATTGGAACCATCG 58.216 45.455 17.77 2.80 41.87 3.84
871 893 5.314529 CCCACGGTCAGATAATAGAGTAGA 58.685 45.833 0.00 0.00 0.00 2.59
910 932 0.813610 TGAACCAGGCAGACACAACG 60.814 55.000 0.00 0.00 0.00 4.10
918 940 1.583054 GCAGACACAACGAAAGGACT 58.417 50.000 0.00 0.00 0.00 3.85
969 991 2.289565 GTGGACATCCGAATTCCTTCC 58.710 52.381 0.00 0.00 39.43 3.46
970 992 2.092914 GTGGACATCCGAATTCCTTCCT 60.093 50.000 0.00 0.00 39.43 3.36
971 993 2.576191 TGGACATCCGAATTCCTTCCTT 59.424 45.455 0.00 0.00 39.43 3.36
972 994 3.206964 GGACATCCGAATTCCTTCCTTC 58.793 50.000 0.00 0.00 0.00 3.46
978 1000 1.751437 GAATTCCTTCCTTCACCCCG 58.249 55.000 0.00 0.00 0.00 5.73
1608 1631 3.135348 TGCTGATCCATCCCTACTTCTTG 59.865 47.826 0.00 0.00 0.00 3.02
1843 1866 2.446435 ACCGTGAGAAATTGATTGGGG 58.554 47.619 0.00 0.00 0.00 4.96
1948 1971 3.858868 GAAGCACAGGTCCGCGTCA 62.859 63.158 4.92 0.00 36.74 4.35
1967 1990 0.539438 ATCGCTGAGTTTTTGGGCCA 60.539 50.000 0.00 0.00 0.00 5.36
1980 2003 0.982852 TGGGCCACCGATGAGATCTT 60.983 55.000 0.00 0.00 40.75 2.40
1982 2005 0.250081 GGCCACCGATGAGATCTTCC 60.250 60.000 0.00 0.00 0.00 3.46
1983 2006 0.465705 GCCACCGATGAGATCTTCCA 59.534 55.000 0.00 0.00 0.00 3.53
1988 2011 4.056740 CACCGATGAGATCTTCCATTCTG 58.943 47.826 0.00 0.00 0.00 3.02
1990 2013 3.493873 CCGATGAGATCTTCCATTCTGCA 60.494 47.826 0.00 0.00 0.00 4.41
2003 2026 3.181490 CCATTCTGCACTCATTCACATGG 60.181 47.826 0.00 0.00 0.00 3.66
2051 2074 7.174426 GGCTATTGTTGTACACTAGGAAGTTTT 59.826 37.037 0.00 0.00 33.52 2.43
2101 2128 7.390027 AGCTGTTCTTCAGTATATGTTCAGTT 58.610 34.615 0.00 0.00 45.23 3.16
2137 2191 5.241728 GGAGTTCAAATCAAACCAGCTAGTT 59.758 40.000 0.00 0.00 0.00 2.24
2164 2218 9.941325 TGCCATTCTGTTCAATTATAAATTTGT 57.059 25.926 0.00 0.00 0.00 2.83
2174 2228 8.671384 TCAATTATAAATTTGTACTCCCTCCG 57.329 34.615 0.00 0.00 0.00 4.63
2175 2229 8.269317 TCAATTATAAATTTGTACTCCCTCCGT 58.731 33.333 0.00 0.00 0.00 4.69
2176 2230 8.557029 CAATTATAAATTTGTACTCCCTCCGTC 58.443 37.037 0.00 0.00 0.00 4.79
2177 2231 3.345508 AAATTTGTACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
2178 2232 0.822164 ATTTGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2179 2233 0.251297 TTTGTACTCCCTCCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
2180 2234 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
2181 2235 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
2182 2236 1.109609 GTACTCCCTCCGTCCGAAAT 58.890 55.000 0.00 0.00 0.00 2.17
2183 2237 1.108776 TACTCCCTCCGTCCGAAATG 58.891 55.000 0.00 0.00 0.00 2.32
2184 2238 1.521681 CTCCCTCCGTCCGAAATGC 60.522 63.158 0.00 0.00 0.00 3.56
2185 2239 1.961180 CTCCCTCCGTCCGAAATGCT 61.961 60.000 0.00 0.00 0.00 3.79
2186 2240 1.078426 CCCTCCGTCCGAAATGCTT 60.078 57.895 0.00 0.00 0.00 3.91
2187 2241 1.369091 CCCTCCGTCCGAAATGCTTG 61.369 60.000 0.00 0.00 0.00 4.01
2188 2242 0.673644 CCTCCGTCCGAAATGCTTGT 60.674 55.000 0.00 0.00 0.00 3.16
2189 2243 0.721718 CTCCGTCCGAAATGCTTGTC 59.278 55.000 0.00 0.00 0.00 3.18
2190 2244 1.011968 TCCGTCCGAAATGCTTGTCG 61.012 55.000 5.22 5.22 37.01 4.35
2197 2251 3.747099 CGAAATGCTTGTCGGAGAAAT 57.253 42.857 4.28 0.00 39.69 2.17
2198 2252 3.419915 CGAAATGCTTGTCGGAGAAATG 58.580 45.455 4.28 0.00 39.69 2.32
2199 2253 3.728864 CGAAATGCTTGTCGGAGAAATGG 60.729 47.826 4.28 0.00 39.69 3.16
2200 2254 2.787473 ATGCTTGTCGGAGAAATGGA 57.213 45.000 0.00 0.00 39.69 3.41
2201 2255 2.787473 TGCTTGTCGGAGAAATGGAT 57.213 45.000 0.00 0.00 39.69 3.41
2202 2256 3.904800 TGCTTGTCGGAGAAATGGATA 57.095 42.857 0.00 0.00 39.69 2.59
2203 2257 4.214986 TGCTTGTCGGAGAAATGGATAA 57.785 40.909 0.00 0.00 39.69 1.75
2204 2258 4.584874 TGCTTGTCGGAGAAATGGATAAA 58.415 39.130 0.00 0.00 39.69 1.40
2205 2259 5.007034 TGCTTGTCGGAGAAATGGATAAAA 58.993 37.500 0.00 0.00 39.69 1.52
2206 2260 5.123820 TGCTTGTCGGAGAAATGGATAAAAG 59.876 40.000 0.00 0.00 39.69 2.27
2207 2261 5.123979 GCTTGTCGGAGAAATGGATAAAAGT 59.876 40.000 0.00 0.00 39.69 2.66
2208 2262 6.494893 TTGTCGGAGAAATGGATAAAAGTG 57.505 37.500 0.00 0.00 39.69 3.16
2209 2263 4.941263 TGTCGGAGAAATGGATAAAAGTGG 59.059 41.667 0.00 0.00 39.69 4.00
2210 2264 5.183228 GTCGGAGAAATGGATAAAAGTGGA 58.817 41.667 0.00 0.00 39.69 4.02
2211 2265 5.823045 GTCGGAGAAATGGATAAAAGTGGAT 59.177 40.000 0.00 0.00 39.69 3.41
2212 2266 5.822519 TCGGAGAAATGGATAAAAGTGGATG 59.177 40.000 0.00 0.00 0.00 3.51
2213 2267 5.506317 CGGAGAAATGGATAAAAGTGGATGC 60.506 44.000 0.00 0.00 0.00 3.91
2214 2268 5.360714 GGAGAAATGGATAAAAGTGGATGCA 59.639 40.000 0.00 0.00 0.00 3.96
2215 2269 6.041296 GGAGAAATGGATAAAAGTGGATGCAT 59.959 38.462 0.00 0.00 35.84 3.96
2216 2270 7.047460 AGAAATGGATAAAAGTGGATGCATC 57.953 36.000 18.81 18.81 33.50 3.91
2217 2271 6.837568 AGAAATGGATAAAAGTGGATGCATCT 59.162 34.615 25.28 7.83 33.50 2.90
2218 2272 8.000709 AGAAATGGATAAAAGTGGATGCATCTA 58.999 33.333 25.28 17.90 33.50 1.98
2219 2273 7.756395 AATGGATAAAAGTGGATGCATCTAG 57.244 36.000 25.28 0.00 33.50 2.43
2220 2274 6.499106 TGGATAAAAGTGGATGCATCTAGA 57.501 37.500 25.28 7.97 0.00 2.43
2221 2275 6.899089 TGGATAAAAGTGGATGCATCTAGAA 58.101 36.000 25.28 7.18 0.00 2.10
2222 2276 6.767902 TGGATAAAAGTGGATGCATCTAGAAC 59.232 38.462 25.28 17.45 0.00 3.01
2223 2277 6.995091 GGATAAAAGTGGATGCATCTAGAACT 59.005 38.462 25.28 19.13 0.00 3.01
2224 2278 8.150945 GGATAAAAGTGGATGCATCTAGAACTA 58.849 37.037 25.28 11.47 0.00 2.24
2225 2279 9.547753 GATAAAAGTGGATGCATCTAGAACTAA 57.452 33.333 25.28 12.81 0.00 2.24
2226 2280 9.905713 ATAAAAGTGGATGCATCTAGAACTAAA 57.094 29.630 25.28 12.54 0.00 1.85
2227 2281 8.635765 AAAAGTGGATGCATCTAGAACTAAAA 57.364 30.769 25.28 0.00 0.00 1.52
2228 2282 8.814038 AAAGTGGATGCATCTAGAACTAAAAT 57.186 30.769 25.28 7.35 0.00 1.82
2229 2283 9.905713 AAAGTGGATGCATCTAGAACTAAAATA 57.094 29.630 25.28 0.00 0.00 1.40
2230 2284 9.905713 AAGTGGATGCATCTAGAACTAAAATAA 57.094 29.630 25.28 0.00 0.00 1.40
2231 2285 9.905713 AGTGGATGCATCTAGAACTAAAATAAA 57.094 29.630 25.28 0.00 0.00 1.40
2258 2312 9.698309 ATATGTGTAGAAACATCTATTTCTCCG 57.302 33.333 4.11 0.00 43.93 4.63
2259 2313 7.165460 TGTGTAGAAACATCTATTTCTCCGA 57.835 36.000 4.11 0.00 43.93 4.55
2260 2314 7.033791 TGTGTAGAAACATCTATTTCTCCGAC 58.966 38.462 4.11 0.00 43.93 4.79
2261 2315 7.033791 GTGTAGAAACATCTATTTCTCCGACA 58.966 38.462 4.11 2.03 43.93 4.35
2262 2316 7.544566 GTGTAGAAACATCTATTTCTCCGACAA 59.455 37.037 4.11 0.00 43.93 3.18
2263 2317 7.759886 TGTAGAAACATCTATTTCTCCGACAAG 59.240 37.037 4.11 0.00 43.93 3.16
2264 2318 6.702329 AGAAACATCTATTTCTCCGACAAGT 58.298 36.000 0.00 0.00 43.93 3.16
2265 2319 7.837863 AGAAACATCTATTTCTCCGACAAGTA 58.162 34.615 0.00 0.00 43.93 2.24
2266 2320 8.478877 AGAAACATCTATTTCTCCGACAAGTAT 58.521 33.333 0.00 0.00 43.93 2.12
2267 2321 9.099454 GAAACATCTATTTCTCCGACAAGTATT 57.901 33.333 0.00 0.00 35.96 1.89
2268 2322 9.449719 AAACATCTATTTCTCCGACAAGTATTT 57.550 29.630 0.00 0.00 0.00 1.40
2269 2323 8.649973 ACATCTATTTCTCCGACAAGTATTTC 57.350 34.615 0.00 0.00 0.00 2.17
2270 2324 7.435488 ACATCTATTTCTCCGACAAGTATTTCG 59.565 37.037 0.00 0.00 34.93 3.46
2302 2356 4.458295 GGAGTACTTTGAAAGGGTTTAGGC 59.542 45.833 10.02 0.00 0.00 3.93
2341 2395 5.947228 TGAAGTTCTCAAATTGCAGTAGG 57.053 39.130 4.17 0.00 0.00 3.18
2342 2396 5.620206 TGAAGTTCTCAAATTGCAGTAGGA 58.380 37.500 4.17 0.00 0.00 2.94
2343 2397 5.702670 TGAAGTTCTCAAATTGCAGTAGGAG 59.297 40.000 4.17 4.31 0.00 3.69
2344 2398 4.583871 AGTTCTCAAATTGCAGTAGGAGG 58.416 43.478 9.27 0.00 0.00 4.30
2345 2399 4.287067 AGTTCTCAAATTGCAGTAGGAGGA 59.713 41.667 9.27 0.00 0.00 3.71
2346 2400 4.478206 TCTCAAATTGCAGTAGGAGGAG 57.522 45.455 9.27 2.58 0.00 3.69
2347 2401 2.941720 CTCAAATTGCAGTAGGAGGAGC 59.058 50.000 3.07 0.00 0.00 4.70
2348 2402 2.573462 TCAAATTGCAGTAGGAGGAGCT 59.427 45.455 0.00 0.00 0.00 4.09
2349 2403 3.009473 TCAAATTGCAGTAGGAGGAGCTT 59.991 43.478 0.00 0.00 0.00 3.74
2350 2404 2.706339 ATTGCAGTAGGAGGAGCTTG 57.294 50.000 0.00 0.00 0.00 4.01
2353 2407 1.621672 GCAGTAGGAGGAGCTTGGCT 61.622 60.000 0.00 0.00 43.88 4.75
2375 2429 7.235399 TGGCTTTCTCAAGAATAAAAAGGGAAT 59.765 33.333 0.00 0.00 33.54 3.01
2407 2461 4.458397 GAGCCTGAATCATCATCTTGGAA 58.542 43.478 0.00 0.00 34.37 3.53
2408 2462 4.863548 AGCCTGAATCATCATCTTGGAAA 58.136 39.130 0.00 0.00 34.37 3.13
2409 2463 5.266788 AGCCTGAATCATCATCTTGGAAAA 58.733 37.500 0.00 0.00 34.37 2.29
2410 2464 5.718130 AGCCTGAATCATCATCTTGGAAAAA 59.282 36.000 0.00 0.00 34.37 1.94
2448 2502 9.868277 TTTATATTTGTGGCTAAAAATGTCTGG 57.132 29.630 8.40 0.00 0.00 3.86
2491 2595 3.057596 TGTTTTTCCATTTCGGCTAGCAG 60.058 43.478 18.24 13.50 33.14 4.24
2512 2616 6.210185 AGCAGTTCAGGCTTTAATCAAAAGAT 59.790 34.615 1.78 0.00 46.44 2.40
2561 2665 9.512435 GACATTCCTTCTGATGTTATTTCATTG 57.488 33.333 0.00 0.00 0.00 2.82
2584 2688 4.743045 GCATGACATGGCAGACTAAGAGAT 60.743 45.833 17.03 0.00 0.00 2.75
2615 2740 7.148000 GGCTTCTCTTAAAAGTGCAATCCTATT 60.148 37.037 0.00 0.00 0.00 1.73
2621 2746 5.726980 AAAAGTGCAATCCTATTGAGCAA 57.273 34.783 3.86 0.00 36.91 3.91
2622 2747 4.708726 AAGTGCAATCCTATTGAGCAAC 57.291 40.909 3.86 0.00 36.91 4.17
2634 2759 6.072508 TCCTATTGAGCAACTGTGAAAATGTC 60.073 38.462 0.00 0.00 0.00 3.06
2678 2803 1.959042 CAGGCCATGACCACTATGAC 58.041 55.000 5.01 0.00 0.00 3.06
2681 2806 1.070758 GGCCATGACCACTATGACGAT 59.929 52.381 0.00 0.00 0.00 3.73
2685 2810 3.007290 CCATGACCACTATGACGATCCAT 59.993 47.826 0.00 0.00 0.00 3.41
2688 2813 3.319122 TGACCACTATGACGATCCATCAG 59.681 47.826 0.00 0.00 0.00 2.90
2693 2818 5.183904 CCACTATGACGATCCATCAGTCATA 59.816 44.000 20.61 20.61 42.89 2.15
2694 2819 6.089476 CACTATGACGATCCATCAGTCATAC 58.911 44.000 19.33 0.00 42.89 2.39
2696 2821 5.535753 ATGACGATCCATCAGTCATACAA 57.464 39.130 17.76 1.06 42.89 2.41
2701 2826 5.059161 CGATCCATCAGTCATACAACCAAT 58.941 41.667 0.00 0.00 0.00 3.16
2732 2857 2.095532 GCATACTGCAGCACTTCTTGAG 59.904 50.000 15.27 0.00 44.26 3.02
2743 2868 4.040952 AGCACTTCTTGAGTACCTTCATGT 59.959 41.667 0.00 0.00 36.65 3.21
2749 2874 5.651530 TCTTGAGTACCTTCATGTTCGATC 58.348 41.667 0.00 0.00 0.00 3.69
2752 2877 4.637091 TGAGTACCTTCATGTTCGATCGTA 59.363 41.667 15.94 1.77 0.00 3.43
2821 2964 6.259550 GGCATGGATAATGTCTTGGATAAC 57.740 41.667 0.00 0.00 37.93 1.89
2830 2973 9.847224 GATAATGTCTTGGATAACCTTTTCCTA 57.153 33.333 0.00 0.00 37.04 2.94
2834 2978 7.466804 TGTCTTGGATAACCTTTTCCTACATT 58.533 34.615 0.00 0.00 37.04 2.71
2845 2989 0.546122 TCCTACATTTCCTGCCGCAT 59.454 50.000 0.00 0.00 0.00 4.73
2847 2991 1.667236 CTACATTTCCTGCCGCATCA 58.333 50.000 0.00 0.00 0.00 3.07
2882 3026 6.150140 ACAGTGATTCCTTTACTTCTTGCATC 59.850 38.462 0.00 0.00 0.00 3.91
2883 3027 6.149973 CAGTGATTCCTTTACTTCTTGCATCA 59.850 38.462 0.00 0.00 0.00 3.07
2903 3047 3.004629 TCATTGCTGTGTCATTGACCAAC 59.995 43.478 14.05 7.26 0.00 3.77
2918 3062 1.212935 ACCAACTGCAGTTTCCTCTGT 59.787 47.619 29.23 15.58 35.83 3.41
3015 3159 8.352942 ACCAGTACATTGAAAGAAATTGAAGAC 58.647 33.333 0.00 0.00 0.00 3.01
3049 3193 4.392138 GCGACTTAGTTTATCTTTGCAGGT 59.608 41.667 0.00 0.00 0.00 4.00
3052 3196 7.360607 GCGACTTAGTTTATCTTTGCAGGTTTA 60.361 37.037 0.00 0.00 0.00 2.01
3090 3238 6.474364 TGCATTAATATGTTTTCACGAGTCG 58.526 36.000 11.85 11.85 34.12 4.18
3289 3437 3.367395 GGCCTTACTTTGAAGCAATCACC 60.367 47.826 0.00 0.00 37.92 4.02
3407 3555 8.467598 TGCCTCATTACAGAACTAACTACTTAG 58.532 37.037 0.00 0.00 36.21 2.18
3627 3784 4.739195 CTGGAACTAGTTCTACAGCTCAC 58.261 47.826 29.66 13.78 39.45 3.51
3633 3790 6.658188 ACTAGTTCTACAGCTCACTTTTCT 57.342 37.500 0.00 0.00 0.00 2.52
3696 3853 5.133322 TCATCAATATTTTCTGGGAGCCTCT 59.867 40.000 0.00 0.00 0.00 3.69
3716 3873 5.011125 CCTCTACTCTTCCAGTGTTCTGAAA 59.989 44.000 0.00 0.00 43.76 2.69
3769 3926 3.118956 ACTTCTCGACATCTCCAACATCC 60.119 47.826 0.00 0.00 0.00 3.51
3866 4023 1.135460 GCTGAAGAGTTTCTGCCATGC 60.135 52.381 7.62 0.00 46.53 4.06
3872 4029 2.093235 AGAGTTTCTGCCATGCTACCTC 60.093 50.000 0.00 0.00 0.00 3.85
3896 4053 6.611236 TCCATGACAGACCACTTGATTATCTA 59.389 38.462 0.00 0.00 0.00 1.98
4040 6763 5.508825 CCATGGCTCTATCTGACTACAGTTC 60.509 48.000 0.00 0.00 43.81 3.01
4055 6778 6.066690 ACTACAGTTCCGTCCATATAAGCTA 58.933 40.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.359576 GTGCAAGGTGATATATTTGGTGGAA 59.640 40.000 0.00 0.00 0.00 3.53
22 23 4.644234 TGTGCAAGGTGATATATTTGGTGG 59.356 41.667 0.00 0.00 0.00 4.61
23 24 5.833406 TGTGCAAGGTGATATATTTGGTG 57.167 39.130 0.00 0.00 0.00 4.17
24 25 7.290061 ACTATGTGCAAGGTGATATATTTGGT 58.710 34.615 0.00 0.00 0.00 3.67
31 38 4.165950 TCCCAACTATGTGCAAGGTGATAT 59.834 41.667 3.41 0.00 33.25 1.63
37 44 2.496899 ACTCCCAACTATGTGCAAGG 57.503 50.000 0.00 0.00 0.00 3.61
46 53 7.966339 TCTTGTAATTAGCTACTCCCAACTA 57.034 36.000 0.00 0.00 0.00 2.24
52 59 8.950208 AACTCATTCTTGTAATTAGCTACTCC 57.050 34.615 0.00 0.00 0.00 3.85
69 76 6.487299 AGGGACCTATAGACAAACTCATTC 57.513 41.667 0.00 0.00 0.00 2.67
81 88 6.859112 AGCAATGTGTATAGGGACCTATAG 57.141 41.667 16.43 6.93 40.79 1.31
83 90 5.484290 GGTAGCAATGTGTATAGGGACCTAT 59.516 44.000 14.81 14.81 41.58 2.57
117 124 1.169661 TTTACACTTGCTGGGCGGTG 61.170 55.000 11.51 11.51 39.41 4.94
122 129 5.895636 TCAACATATTTACACTTGCTGGG 57.104 39.130 0.00 0.00 0.00 4.45
126 133 7.028962 TCAGCAATCAACATATTTACACTTGC 58.971 34.615 0.00 0.00 37.36 4.01
135 142 6.153170 TCACATGGTTCAGCAATCAACATATT 59.847 34.615 0.00 0.00 0.00 1.28
139 146 3.220940 TCACATGGTTCAGCAATCAACA 58.779 40.909 0.00 0.00 0.00 3.33
148 155 6.039270 TGTTCTAAACCTTTCACATGGTTCAG 59.961 38.462 0.00 0.00 44.83 3.02
222 229 4.449068 ACCATCTGCGCTTTATTTAGATCG 59.551 41.667 9.73 1.68 0.00 3.69
224 231 7.217200 TCTAACCATCTGCGCTTTATTTAGAT 58.783 34.615 9.73 3.32 0.00 1.98
227 234 7.801716 AATCTAACCATCTGCGCTTTATTTA 57.198 32.000 9.73 0.00 0.00 1.40
235 242 3.119849 ACAACAAATCTAACCATCTGCGC 60.120 43.478 0.00 0.00 0.00 6.09
236 243 4.406069 CACAACAAATCTAACCATCTGCG 58.594 43.478 0.00 0.00 0.00 5.18
237 244 4.218417 ACCACAACAAATCTAACCATCTGC 59.782 41.667 0.00 0.00 0.00 4.26
238 245 5.964958 ACCACAACAAATCTAACCATCTG 57.035 39.130 0.00 0.00 0.00 2.90
239 246 7.016153 TCTACCACAACAAATCTAACCATCT 57.984 36.000 0.00 0.00 0.00 2.90
240 247 7.361799 GGTTCTACCACAACAAATCTAACCATC 60.362 40.741 0.00 0.00 38.42 3.51
243 250 5.766174 TGGTTCTACCACAACAAATCTAACC 59.234 40.000 0.00 0.00 44.79 2.85
244 251 6.870971 TGGTTCTACCACAACAAATCTAAC 57.129 37.500 0.00 0.00 44.79 2.34
258 265 7.179076 TGAACTCTAATAGGTTGGTTCTACC 57.821 40.000 0.00 0.00 39.22 3.18
259 266 8.312564 ACTTGAACTCTAATAGGTTGGTTCTAC 58.687 37.037 0.00 0.00 35.52 2.59
260 267 8.431910 ACTTGAACTCTAATAGGTTGGTTCTA 57.568 34.615 0.00 0.00 35.52 2.10
261 268 7.317722 ACTTGAACTCTAATAGGTTGGTTCT 57.682 36.000 0.00 0.00 35.52 3.01
262 269 7.878644 AGAACTTGAACTCTAATAGGTTGGTTC 59.121 37.037 14.42 14.42 35.20 3.62
263 270 7.746703 AGAACTTGAACTCTAATAGGTTGGTT 58.253 34.615 0.13 0.00 0.00 3.67
264 271 7.317722 AGAACTTGAACTCTAATAGGTTGGT 57.682 36.000 0.13 0.00 0.00 3.67
265 272 8.750298 TCTAGAACTTGAACTCTAATAGGTTGG 58.250 37.037 0.00 0.00 0.00 3.77
266 273 9.575783 GTCTAGAACTTGAACTCTAATAGGTTG 57.424 37.037 0.00 0.00 0.00 3.77
267 274 9.536510 AGTCTAGAACTTGAACTCTAATAGGTT 57.463 33.333 0.00 0.00 33.03 3.50
268 275 9.536510 AAGTCTAGAACTTGAACTCTAATAGGT 57.463 33.333 0.00 0.00 46.61 3.08
283 290 3.418995 TCGTAGTGCCAAGTCTAGAACT 58.581 45.455 0.00 0.00 41.10 3.01
284 291 3.844577 TCGTAGTGCCAAGTCTAGAAC 57.155 47.619 0.00 0.00 0.00 3.01
285 292 4.014406 TGATCGTAGTGCCAAGTCTAGAA 58.986 43.478 0.00 0.00 0.00 2.10
286 293 3.617284 TGATCGTAGTGCCAAGTCTAGA 58.383 45.455 0.00 0.00 0.00 2.43
287 294 4.576216 ATGATCGTAGTGCCAAGTCTAG 57.424 45.455 0.00 0.00 0.00 2.43
288 295 6.650427 AATATGATCGTAGTGCCAAGTCTA 57.350 37.500 0.41 0.00 0.00 2.59
289 296 5.537300 AATATGATCGTAGTGCCAAGTCT 57.463 39.130 0.41 0.00 0.00 3.24
290 297 6.604735 AAAATATGATCGTAGTGCCAAGTC 57.395 37.500 0.41 0.00 0.00 3.01
313 320 8.983724 CGCCAAAGGTCTGAAATAAATTTTAAA 58.016 29.630 0.00 0.00 0.00 1.52
314 321 8.145122 ACGCCAAAGGTCTGAAATAAATTTTAA 58.855 29.630 0.00 0.00 0.00 1.52
315 322 7.662897 ACGCCAAAGGTCTGAAATAAATTTTA 58.337 30.769 0.00 0.00 0.00 1.52
316 323 6.521162 ACGCCAAAGGTCTGAAATAAATTTT 58.479 32.000 0.00 0.00 0.00 1.82
317 324 6.096673 ACGCCAAAGGTCTGAAATAAATTT 57.903 33.333 0.00 0.00 0.00 1.82
318 325 5.722021 ACGCCAAAGGTCTGAAATAAATT 57.278 34.783 0.00 0.00 0.00 1.82
319 326 5.010617 ACAACGCCAAAGGTCTGAAATAAAT 59.989 36.000 0.00 0.00 0.00 1.40
320 327 4.339814 ACAACGCCAAAGGTCTGAAATAAA 59.660 37.500 0.00 0.00 0.00 1.40
321 328 3.886505 ACAACGCCAAAGGTCTGAAATAA 59.113 39.130 0.00 0.00 0.00 1.40
322 329 3.482436 ACAACGCCAAAGGTCTGAAATA 58.518 40.909 0.00 0.00 0.00 1.40
323 330 2.306847 ACAACGCCAAAGGTCTGAAAT 58.693 42.857 0.00 0.00 0.00 2.17
324 331 1.757682 ACAACGCCAAAGGTCTGAAA 58.242 45.000 0.00 0.00 0.00 2.69
325 332 2.215196 GTACAACGCCAAAGGTCTGAA 58.785 47.619 0.00 0.00 0.00 3.02
326 333 1.870580 CGTACAACGCCAAAGGTCTGA 60.871 52.381 0.00 0.00 33.65 3.27
327 334 0.511221 CGTACAACGCCAAAGGTCTG 59.489 55.000 0.00 0.00 33.65 3.51
328 335 2.908817 CGTACAACGCCAAAGGTCT 58.091 52.632 0.00 0.00 33.65 3.85
339 346 1.012486 CCTCCCGCTGAACGTACAAC 61.012 60.000 0.00 0.00 41.42 3.32
340 347 1.290955 CCTCCCGCTGAACGTACAA 59.709 57.895 0.00 0.00 41.42 2.41
341 348 1.904865 ACCTCCCGCTGAACGTACA 60.905 57.895 0.00 0.00 41.42 2.90
342 349 1.445582 CACCTCCCGCTGAACGTAC 60.446 63.158 0.00 0.00 41.42 3.67
343 350 1.604308 TCACCTCCCGCTGAACGTA 60.604 57.895 0.00 0.00 41.42 3.57
344 351 2.915659 TCACCTCCCGCTGAACGT 60.916 61.111 0.00 0.00 41.42 3.99
345 352 2.432628 GTCACCTCCCGCTGAACG 60.433 66.667 0.00 0.00 43.15 3.95
346 353 0.321653 AATGTCACCTCCCGCTGAAC 60.322 55.000 0.00 0.00 0.00 3.18
347 354 0.400213 AAATGTCACCTCCCGCTGAA 59.600 50.000 0.00 0.00 0.00 3.02
348 355 0.036388 GAAATGTCACCTCCCGCTGA 60.036 55.000 0.00 0.00 0.00 4.26
349 356 0.036010 AGAAATGTCACCTCCCGCTG 60.036 55.000 0.00 0.00 0.00 5.18
350 357 1.568504 TAGAAATGTCACCTCCCGCT 58.431 50.000 0.00 0.00 0.00 5.52
351 358 2.484889 GATAGAAATGTCACCTCCCGC 58.515 52.381 0.00 0.00 0.00 6.13
352 359 2.361119 TCGATAGAAATGTCACCTCCCG 59.639 50.000 0.00 0.00 46.15 5.14
367 374 6.727824 AAATTCACCACAGACTTTCGATAG 57.272 37.500 0.92 0.92 0.00 2.08
368 375 8.258007 AGATAAATTCACCACAGACTTTCGATA 58.742 33.333 0.00 0.00 0.00 2.92
369 376 7.106239 AGATAAATTCACCACAGACTTTCGAT 58.894 34.615 0.00 0.00 0.00 3.59
370 377 6.464222 AGATAAATTCACCACAGACTTTCGA 58.536 36.000 0.00 0.00 0.00 3.71
371 378 6.727824 AGATAAATTCACCACAGACTTTCG 57.272 37.500 0.00 0.00 0.00 3.46
372 379 7.824779 AGGTAGATAAATTCACCACAGACTTTC 59.175 37.037 0.00 0.00 33.27 2.62
373 380 7.690256 AGGTAGATAAATTCACCACAGACTTT 58.310 34.615 0.00 0.00 33.27 2.66
374 381 7.038302 TGAGGTAGATAAATTCACCACAGACTT 60.038 37.037 0.00 0.00 33.27 3.01
375 382 6.440647 TGAGGTAGATAAATTCACCACAGACT 59.559 38.462 0.00 0.00 33.27 3.24
376 383 6.640518 TGAGGTAGATAAATTCACCACAGAC 58.359 40.000 0.00 0.00 33.27 3.51
377 384 6.867519 TGAGGTAGATAAATTCACCACAGA 57.132 37.500 0.00 0.00 33.27 3.41
378 385 6.878923 TGTTGAGGTAGATAAATTCACCACAG 59.121 38.462 0.00 0.00 33.97 3.66
379 386 6.774673 TGTTGAGGTAGATAAATTCACCACA 58.225 36.000 0.00 0.00 33.27 4.17
380 387 7.552687 TCATGTTGAGGTAGATAAATTCACCAC 59.447 37.037 0.00 0.00 33.27 4.16
381 388 7.629157 TCATGTTGAGGTAGATAAATTCACCA 58.371 34.615 0.00 0.00 33.27 4.17
382 389 8.562892 CATCATGTTGAGGTAGATAAATTCACC 58.437 37.037 0.00 0.00 0.00 4.02
383 390 9.113838 ACATCATGTTGAGGTAGATAAATTCAC 57.886 33.333 10.74 0.00 39.85 3.18
384 391 9.112725 CACATCATGTTGAGGTAGATAAATTCA 57.887 33.333 10.74 0.00 39.61 2.57
385 392 8.072567 GCACATCATGTTGAGGTAGATAAATTC 58.927 37.037 10.74 0.00 39.61 2.17
386 393 7.013655 GGCACATCATGTTGAGGTAGATAAATT 59.986 37.037 10.74 0.00 39.61 1.82
387 394 6.488006 GGCACATCATGTTGAGGTAGATAAAT 59.512 38.462 10.74 0.00 39.61 1.40
388 395 5.822519 GGCACATCATGTTGAGGTAGATAAA 59.177 40.000 10.74 0.00 39.61 1.40
389 396 5.104569 TGGCACATCATGTTGAGGTAGATAA 60.105 40.000 10.74 0.00 39.61 1.75
390 397 4.408596 TGGCACATCATGTTGAGGTAGATA 59.591 41.667 10.74 0.00 39.61 1.98
391 398 3.200605 TGGCACATCATGTTGAGGTAGAT 59.799 43.478 10.74 0.00 39.61 1.98
392 399 2.571202 TGGCACATCATGTTGAGGTAGA 59.429 45.455 10.74 0.00 39.61 2.59
393 400 2.941064 CTGGCACATCATGTTGAGGTAG 59.059 50.000 10.74 0.88 39.61 3.18
394 401 2.940971 GCTGGCACATCATGTTGAGGTA 60.941 50.000 10.74 0.00 39.61 3.08
395 402 1.830279 CTGGCACATCATGTTGAGGT 58.170 50.000 10.74 0.00 42.67 3.85
396 403 0.454600 GCTGGCACATCATGTTGAGG 59.545 55.000 10.74 3.78 38.20 3.86
397 404 1.400846 GAGCTGGCACATCATGTTGAG 59.599 52.381 10.74 3.92 38.20 3.02
398 405 1.271488 TGAGCTGGCACATCATGTTGA 60.271 47.619 10.74 0.00 38.20 3.18
399 406 1.132453 CTGAGCTGGCACATCATGTTG 59.868 52.381 0.00 2.12 38.20 3.33
400 407 1.271762 ACTGAGCTGGCACATCATGTT 60.272 47.619 0.00 0.00 38.20 2.71
401 408 0.327259 ACTGAGCTGGCACATCATGT 59.673 50.000 0.00 0.00 38.20 3.21
402 409 1.015109 GACTGAGCTGGCACATCATG 58.985 55.000 0.00 0.00 38.20 3.07
403 410 0.910338 AGACTGAGCTGGCACATCAT 59.090 50.000 0.00 0.00 38.20 2.45
404 411 0.689055 AAGACTGAGCTGGCACATCA 59.311 50.000 0.00 0.00 38.20 3.07
405 412 1.736681 GAAAGACTGAGCTGGCACATC 59.263 52.381 0.00 0.00 38.20 3.06
406 413 1.818642 GAAAGACTGAGCTGGCACAT 58.181 50.000 0.00 0.00 38.20 3.21
407 414 0.601046 CGAAAGACTGAGCTGGCACA 60.601 55.000 0.00 0.00 0.00 4.57
408 415 0.319900 TCGAAAGACTGAGCTGGCAC 60.320 55.000 0.00 0.00 33.31 5.01
409 416 0.392706 TTCGAAAGACTGAGCTGGCA 59.607 50.000 0.00 0.00 41.84 4.92
410 417 1.512926 TTTCGAAAGACTGAGCTGGC 58.487 50.000 6.47 0.00 41.84 4.85
411 418 3.669023 GCAATTTCGAAAGACTGAGCTGG 60.669 47.826 16.80 0.00 41.84 4.85
412 419 3.188048 AGCAATTTCGAAAGACTGAGCTG 59.812 43.478 16.80 4.65 41.84 4.24
413 420 3.406764 AGCAATTTCGAAAGACTGAGCT 58.593 40.909 16.80 14.24 41.84 4.09
414 421 3.187227 TGAGCAATTTCGAAAGACTGAGC 59.813 43.478 16.80 12.43 41.84 4.26
415 422 4.997905 TGAGCAATTTCGAAAGACTGAG 57.002 40.909 16.80 3.64 41.84 3.35
416 423 6.818142 TCATATGAGCAATTTCGAAAGACTGA 59.182 34.615 16.80 7.83 41.84 3.41
417 424 7.008440 TCATATGAGCAATTTCGAAAGACTG 57.992 36.000 16.80 13.54 41.84 3.51
418 425 7.798596 ATCATATGAGCAATTTCGAAAGACT 57.201 32.000 16.80 12.55 41.84 3.24
419 426 8.982685 TCTATCATATGAGCAATTTCGAAAGAC 58.017 33.333 16.80 7.98 41.84 3.01
420 427 9.201127 CTCTATCATATGAGCAATTTCGAAAGA 57.799 33.333 16.80 4.33 39.20 2.52
421 428 8.986847 ACTCTATCATATGAGCAATTTCGAAAG 58.013 33.333 16.80 4.77 33.92 2.62
422 429 8.768019 CACTCTATCATATGAGCAATTTCGAAA 58.232 33.333 13.91 13.91 33.92 3.46
423 430 7.928167 ACACTCTATCATATGAGCAATTTCGAA 59.072 33.333 11.78 0.00 33.92 3.71
424 431 7.383300 CACACTCTATCATATGAGCAATTTCGA 59.617 37.037 11.78 0.00 33.92 3.71
425 432 7.508134 CACACTCTATCATATGAGCAATTTCG 58.492 38.462 11.78 0.00 33.92 3.46
426 433 7.296660 GCACACTCTATCATATGAGCAATTTC 58.703 38.462 11.78 0.00 33.92 2.17
427 434 6.073385 CGCACACTCTATCATATGAGCAATTT 60.073 38.462 11.78 0.00 33.92 1.82
428 435 5.407691 CGCACACTCTATCATATGAGCAATT 59.592 40.000 11.78 0.00 33.92 2.32
429 436 4.928020 CGCACACTCTATCATATGAGCAAT 59.072 41.667 11.78 0.00 33.92 3.56
430 437 4.202151 ACGCACACTCTATCATATGAGCAA 60.202 41.667 11.78 0.00 33.92 3.91
431 438 3.319122 ACGCACACTCTATCATATGAGCA 59.681 43.478 11.78 0.74 33.92 4.26
432 439 3.672397 CACGCACACTCTATCATATGAGC 59.328 47.826 11.78 5.49 33.92 4.26
433 440 3.672397 GCACGCACACTCTATCATATGAG 59.328 47.826 11.78 0.00 36.47 2.90
434 441 3.642705 GCACGCACACTCTATCATATGA 58.357 45.455 8.10 8.10 0.00 2.15
435 442 2.406357 CGCACGCACACTCTATCATATG 59.594 50.000 0.00 0.00 0.00 1.78
436 443 2.034685 ACGCACGCACACTCTATCATAT 59.965 45.455 0.00 0.00 0.00 1.78
437 444 1.404035 ACGCACGCACACTCTATCATA 59.596 47.619 0.00 0.00 0.00 2.15
438 445 0.173481 ACGCACGCACACTCTATCAT 59.827 50.000 0.00 0.00 0.00 2.45
439 446 0.038618 AACGCACGCACACTCTATCA 60.039 50.000 0.00 0.00 0.00 2.15
440 447 0.640768 GAACGCACGCACACTCTATC 59.359 55.000 0.00 0.00 0.00 2.08
441 448 0.038618 TGAACGCACGCACACTCTAT 60.039 50.000 0.00 0.00 0.00 1.98
442 449 0.038618 ATGAACGCACGCACACTCTA 60.039 50.000 0.00 0.00 0.00 2.43
443 450 0.038618 TATGAACGCACGCACACTCT 60.039 50.000 0.00 0.00 0.00 3.24
444 451 0.999406 ATATGAACGCACGCACACTC 59.001 50.000 0.00 0.00 0.00 3.51
445 452 0.721154 CATATGAACGCACGCACACT 59.279 50.000 0.00 0.00 0.00 3.55
446 453 0.247655 CCATATGAACGCACGCACAC 60.248 55.000 3.65 0.00 0.00 3.82
447 454 1.365368 CCCATATGAACGCACGCACA 61.365 55.000 3.65 0.00 0.00 4.57
448 455 1.351707 CCCATATGAACGCACGCAC 59.648 57.895 3.65 0.00 0.00 5.34
449 456 1.078778 ACCCATATGAACGCACGCA 60.079 52.632 3.65 0.00 0.00 5.24
450 457 1.087202 TCACCCATATGAACGCACGC 61.087 55.000 3.65 0.00 0.00 5.34
451 458 1.364721 TTCACCCATATGAACGCACG 58.635 50.000 3.65 0.00 33.62 5.34
452 459 6.985188 ATATATTCACCCATATGAACGCAC 57.015 37.500 3.65 0.00 41.29 5.34
453 460 7.226523 GCATATATATTCACCCATATGAACGCA 59.773 37.037 3.65 0.00 41.29 5.24
454 461 7.226523 TGCATATATATTCACCCATATGAACGC 59.773 37.037 3.65 0.00 41.29 4.84
455 462 8.661352 TGCATATATATTCACCCATATGAACG 57.339 34.615 3.65 0.00 41.29 3.95
462 469 9.710900 CGTACATATGCATATATATTCACCCAT 57.289 33.333 18.70 0.00 0.00 4.00
463 470 8.919145 TCGTACATATGCATATATATTCACCCA 58.081 33.333 18.70 0.00 0.00 4.51
464 471 9.411801 CTCGTACATATGCATATATATTCACCC 57.588 37.037 18.70 0.00 0.00 4.61
465 472 8.916654 GCTCGTACATATGCATATATATTCACC 58.083 37.037 18.70 0.00 0.00 4.02
466 473 8.630840 CGCTCGTACATATGCATATATATTCAC 58.369 37.037 18.70 2.48 0.00 3.18
467 474 8.349983 ACGCTCGTACATATGCATATATATTCA 58.650 33.333 18.70 0.00 0.00 2.57
468 475 8.729529 ACGCTCGTACATATGCATATATATTC 57.270 34.615 18.70 1.18 0.00 1.75
469 476 8.568794 AGACGCTCGTACATATGCATATATATT 58.431 33.333 18.70 6.70 0.00 1.28
470 477 8.017946 CAGACGCTCGTACATATGCATATATAT 58.982 37.037 18.70 10.09 0.00 0.86
471 478 7.012044 ACAGACGCTCGTACATATGCATATATA 59.988 37.037 18.70 9.77 0.00 0.86
472 479 6.183360 ACAGACGCTCGTACATATGCATATAT 60.183 38.462 18.70 10.88 0.00 0.86
473 480 5.123344 ACAGACGCTCGTACATATGCATATA 59.877 40.000 18.70 1.87 0.00 0.86
474 481 4.082733 ACAGACGCTCGTACATATGCATAT 60.083 41.667 13.63 13.63 0.00 1.78
475 482 3.252458 ACAGACGCTCGTACATATGCATA 59.748 43.478 9.27 9.27 0.00 3.14
476 483 2.034685 ACAGACGCTCGTACATATGCAT 59.965 45.455 3.79 3.79 0.00 3.96
477 484 1.404035 ACAGACGCTCGTACATATGCA 59.596 47.619 1.58 0.00 0.00 3.96
478 485 1.781429 CACAGACGCTCGTACATATGC 59.219 52.381 1.58 0.00 0.00 3.14
479 486 3.066369 ACACAGACGCTCGTACATATG 57.934 47.619 0.00 0.00 0.00 1.78
480 487 4.888038 TTACACAGACGCTCGTACATAT 57.112 40.909 0.00 0.00 0.00 1.78
481 488 4.683501 TTTACACAGACGCTCGTACATA 57.316 40.909 0.00 0.00 0.00 2.29
482 489 3.564235 TTTACACAGACGCTCGTACAT 57.436 42.857 0.00 0.00 0.00 2.29
483 490 3.352554 TTTTACACAGACGCTCGTACA 57.647 42.857 0.00 0.00 0.00 2.90
484 491 3.486841 TGTTTTTACACAGACGCTCGTAC 59.513 43.478 0.00 0.00 0.00 3.67
485 492 3.704512 TGTTTTTACACAGACGCTCGTA 58.295 40.909 0.00 0.00 0.00 3.43
486 493 2.542597 TGTTTTTACACAGACGCTCGT 58.457 42.857 0.00 0.00 0.00 4.18
487 494 3.579147 TTGTTTTTACACAGACGCTCG 57.421 42.857 0.00 0.00 0.00 5.03
488 495 7.059488 CACATATTTGTTTTTACACAGACGCTC 59.941 37.037 0.00 0.00 32.34 5.03
489 496 6.855914 CACATATTTGTTTTTACACAGACGCT 59.144 34.615 0.00 0.00 32.34 5.07
490 497 6.853872 TCACATATTTGTTTTTACACAGACGC 59.146 34.615 0.00 0.00 32.34 5.19
491 498 8.948853 ATCACATATTTGTTTTTACACAGACG 57.051 30.769 0.00 0.00 32.34 4.18
495 502 9.737427 ACGAAATCACATATTTGTTTTTACACA 57.263 25.926 0.00 0.00 32.34 3.72
505 512 8.405531 ACCCATTCTTACGAAATCACATATTTG 58.594 33.333 0.00 0.00 31.91 2.32
508 515 8.429641 ACTACCCATTCTTACGAAATCACATAT 58.570 33.333 0.00 0.00 31.91 1.78
518 525 4.699735 TCACGTAACTACCCATTCTTACGA 59.300 41.667 13.94 0.00 42.52 3.43
519 526 4.795278 GTCACGTAACTACCCATTCTTACG 59.205 45.833 7.14 7.14 44.43 3.18
521 528 5.981088 TGTCACGTAACTACCCATTCTTA 57.019 39.130 0.00 0.00 0.00 2.10
545 552 7.961325 AAAACGGAAAAGCACAATATTTCAT 57.039 28.000 0.00 0.00 35.32 2.57
552 559 4.261867 GGGAGTAAAACGGAAAAGCACAAT 60.262 41.667 0.00 0.00 0.00 2.71
553 560 3.067040 GGGAGTAAAACGGAAAAGCACAA 59.933 43.478 0.00 0.00 0.00 3.33
563 570 0.108472 GGACGGAGGGAGTAAAACGG 60.108 60.000 0.00 0.00 0.00 4.44
564 571 0.604578 TGGACGGAGGGAGTAAAACG 59.395 55.000 0.00 0.00 0.00 3.60
582 590 9.996554 AGAACCCTTTTTATCCAAGTATTTTTG 57.003 29.630 0.00 0.00 0.00 2.44
590 598 9.734984 TTAGTTCTAGAACCCTTTTTATCCAAG 57.265 33.333 28.05 0.00 42.06 3.61
597 605 9.565090 ACGTATTTTAGTTCTAGAACCCTTTTT 57.435 29.630 28.05 13.69 42.06 1.94
598 606 9.565090 AACGTATTTTAGTTCTAGAACCCTTTT 57.435 29.630 28.05 14.34 42.06 2.27
599 607 9.565090 AAACGTATTTTAGTTCTAGAACCCTTT 57.435 29.630 28.05 14.68 42.06 3.11
643 651 9.638239 GTCTGGAAATACTTGCATCAAAATAAA 57.362 29.630 0.00 0.00 31.82 1.40
644 652 7.967854 CGTCTGGAAATACTTGCATCAAAATAA 59.032 33.333 0.00 0.00 31.82 1.40
645 653 7.415095 CCGTCTGGAAATACTTGCATCAAAATA 60.415 37.037 0.00 0.00 37.49 1.40
646 654 6.324819 CGTCTGGAAATACTTGCATCAAAAT 58.675 36.000 0.00 0.00 31.82 1.82
647 655 5.335583 CCGTCTGGAAATACTTGCATCAAAA 60.336 40.000 0.00 0.00 37.49 2.44
648 656 4.155826 CCGTCTGGAAATACTTGCATCAAA 59.844 41.667 0.00 0.00 37.49 2.69
649 657 3.689161 CCGTCTGGAAATACTTGCATCAA 59.311 43.478 0.00 0.00 37.49 2.57
650 658 3.055458 TCCGTCTGGAAATACTTGCATCA 60.055 43.478 0.00 0.00 42.85 3.07
651 659 3.531538 TCCGTCTGGAAATACTTGCATC 58.468 45.455 0.00 0.00 42.85 3.91
652 660 3.535561 CTCCGTCTGGAAATACTTGCAT 58.464 45.455 0.00 0.00 45.87 3.96
653 661 2.354704 CCTCCGTCTGGAAATACTTGCA 60.355 50.000 0.00 0.00 45.87 4.08
654 662 2.280628 CCTCCGTCTGGAAATACTTGC 58.719 52.381 0.00 0.00 45.87 4.01
655 663 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
656 664 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
657 665 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
658 666 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
659 667 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
660 668 2.108970 GTACTCCCTCCGTCTGGAAAT 58.891 52.381 0.00 0.00 45.87 2.17
661 669 1.203087 TGTACTCCCTCCGTCTGGAAA 60.203 52.381 0.00 0.00 45.87 3.13
662 670 0.406750 TGTACTCCCTCCGTCTGGAA 59.593 55.000 0.00 0.00 45.87 3.53
663 671 0.629596 ATGTACTCCCTCCGTCTGGA 59.370 55.000 0.00 0.00 43.88 3.86
664 672 1.486211 AATGTACTCCCTCCGTCTGG 58.514 55.000 0.00 0.00 0.00 3.86
665 673 2.496070 TCAAATGTACTCCCTCCGTCTG 59.504 50.000 0.00 0.00 0.00 3.51
666 674 2.816411 TCAAATGTACTCCCTCCGTCT 58.184 47.619 0.00 0.00 0.00 4.18
667 675 3.056035 ACTTCAAATGTACTCCCTCCGTC 60.056 47.826 0.00 0.00 0.00 4.79
668 676 2.904434 ACTTCAAATGTACTCCCTCCGT 59.096 45.455 0.00 0.00 0.00 4.69
669 677 3.611766 ACTTCAAATGTACTCCCTCCG 57.388 47.619 0.00 0.00 0.00 4.63
670 678 4.652822 ACAACTTCAAATGTACTCCCTCC 58.347 43.478 0.00 0.00 0.00 4.30
671 679 5.351740 GCTACAACTTCAAATGTACTCCCTC 59.648 44.000 0.00 0.00 0.00 4.30
672 680 5.246307 GCTACAACTTCAAATGTACTCCCT 58.754 41.667 0.00 0.00 0.00 4.20
673 681 4.395231 GGCTACAACTTCAAATGTACTCCC 59.605 45.833 0.00 0.00 0.00 4.30
674 682 4.092968 CGGCTACAACTTCAAATGTACTCC 59.907 45.833 0.00 0.00 0.00 3.85
709 717 5.896073 TGGAAAATGGCCTTTAGGAAAAA 57.104 34.783 3.32 0.00 37.39 1.94
714 722 3.774216 TCCAATGGAAAATGGCCTTTAGG 59.226 43.478 3.32 0.00 36.62 2.69
723 744 4.717233 TCGATGGTTCCAATGGAAAATG 57.283 40.909 17.31 5.57 43.86 2.32
871 893 2.091994 CAGGCCTTGGATCTGGAAAGAT 60.092 50.000 0.00 0.00 0.00 2.40
910 932 2.147150 GTGAACTGCTGGAGTCCTTTC 58.853 52.381 11.33 6.01 31.73 2.62
918 940 2.495270 GAGAGATCAGTGAACTGCTGGA 59.505 50.000 7.76 0.00 43.46 3.86
1326 1348 4.831307 GACACGACGATCGCGCCT 62.831 66.667 24.64 13.92 45.12 5.52
1566 1589 1.290324 GAGCGAGCTCACCTTCACA 59.710 57.895 19.09 0.00 42.31 3.58
1623 1646 2.415608 GCCCATCTCGTCCGACTCA 61.416 63.158 0.00 0.00 0.00 3.41
1843 1866 2.282462 CTCACCTTGCCACCCACC 60.282 66.667 0.00 0.00 0.00 4.61
1857 1880 1.289160 CCTCCCAGATTTCCACCTCA 58.711 55.000 0.00 0.00 0.00 3.86
1948 1971 0.539438 TGGCCCAAAAACTCAGCGAT 60.539 50.000 0.00 0.00 0.00 4.58
1956 1979 0.243636 CTCATCGGTGGCCCAAAAAC 59.756 55.000 0.00 0.00 0.00 2.43
1960 1983 0.982852 AGATCTCATCGGTGGCCCAA 60.983 55.000 0.00 0.00 0.00 4.12
1967 1990 3.494048 GCAGAATGGAAGATCTCATCGGT 60.494 47.826 0.00 0.00 35.86 4.69
1980 2003 3.421919 TGTGAATGAGTGCAGAATGGA 57.578 42.857 0.00 0.00 35.86 3.41
1982 2005 3.733988 GCCATGTGAATGAGTGCAGAATG 60.734 47.826 0.00 0.00 40.87 2.67
1983 2006 2.426024 GCCATGTGAATGAGTGCAGAAT 59.574 45.455 0.00 0.00 0.00 2.40
1988 2011 0.889994 TTGGCCATGTGAATGAGTGC 59.110 50.000 6.09 0.00 0.00 4.40
1990 2013 1.843368 CCTTGGCCATGTGAATGAGT 58.157 50.000 6.09 0.00 0.00 3.41
2003 2026 2.818130 TTCAAGAACATTGCCTTGGC 57.182 45.000 15.18 4.43 39.98 4.52
2051 2074 6.862209 ACAAACATGTCTTAAGCAAAACTCA 58.138 32.000 0.00 0.00 0.00 3.41
2101 2128 9.958180 TTTGATTTGAACTCCAGATGATAGTAA 57.042 29.630 0.00 0.00 0.00 2.24
2111 2164 3.571401 AGCTGGTTTGATTTGAACTCCAG 59.429 43.478 0.00 0.00 42.37 3.86
2164 2218 1.108776 CATTTCGGACGGAGGGAGTA 58.891 55.000 0.00 0.00 0.00 2.59
2165 2219 1.898154 CATTTCGGACGGAGGGAGT 59.102 57.895 0.00 0.00 0.00 3.85
2166 2220 1.521681 GCATTTCGGACGGAGGGAG 60.522 63.158 0.00 0.00 0.00 4.30
2167 2221 1.550130 AAGCATTTCGGACGGAGGGA 61.550 55.000 0.00 0.00 0.00 4.20
2168 2222 1.078426 AAGCATTTCGGACGGAGGG 60.078 57.895 0.00 0.00 0.00 4.30
2169 2223 0.673644 ACAAGCATTTCGGACGGAGG 60.674 55.000 0.00 0.00 0.00 4.30
2170 2224 0.721718 GACAAGCATTTCGGACGGAG 59.278 55.000 0.00 0.00 0.00 4.63
2171 2225 1.011968 CGACAAGCATTTCGGACGGA 61.012 55.000 0.00 0.00 0.00 4.69
2172 2226 1.419922 CGACAAGCATTTCGGACGG 59.580 57.895 0.00 0.00 0.00 4.79
2177 2231 3.419915 CATTTCTCCGACAAGCATTTCG 58.580 45.455 0.00 0.00 34.93 3.46
2178 2232 3.440173 TCCATTTCTCCGACAAGCATTTC 59.560 43.478 0.00 0.00 0.00 2.17
2179 2233 3.420893 TCCATTTCTCCGACAAGCATTT 58.579 40.909 0.00 0.00 0.00 2.32
2180 2234 3.071874 TCCATTTCTCCGACAAGCATT 57.928 42.857 0.00 0.00 0.00 3.56
2181 2235 2.787473 TCCATTTCTCCGACAAGCAT 57.213 45.000 0.00 0.00 0.00 3.79
2182 2236 2.787473 ATCCATTTCTCCGACAAGCA 57.213 45.000 0.00 0.00 0.00 3.91
2183 2237 5.123979 ACTTTTATCCATTTCTCCGACAAGC 59.876 40.000 0.00 0.00 0.00 4.01
2184 2238 6.403636 CCACTTTTATCCATTTCTCCGACAAG 60.404 42.308 0.00 0.00 0.00 3.16
2185 2239 5.414454 CCACTTTTATCCATTTCTCCGACAA 59.586 40.000 0.00 0.00 0.00 3.18
2186 2240 4.941263 CCACTTTTATCCATTTCTCCGACA 59.059 41.667 0.00 0.00 0.00 4.35
2187 2241 5.183228 TCCACTTTTATCCATTTCTCCGAC 58.817 41.667 0.00 0.00 0.00 4.79
2188 2242 5.429681 TCCACTTTTATCCATTTCTCCGA 57.570 39.130 0.00 0.00 0.00 4.55
2189 2243 5.506317 GCATCCACTTTTATCCATTTCTCCG 60.506 44.000 0.00 0.00 0.00 4.63
2190 2244 5.360714 TGCATCCACTTTTATCCATTTCTCC 59.639 40.000 0.00 0.00 0.00 3.71
2191 2245 6.455360 TGCATCCACTTTTATCCATTTCTC 57.545 37.500 0.00 0.00 0.00 2.87
2192 2246 6.837568 AGATGCATCCACTTTTATCCATTTCT 59.162 34.615 23.06 0.00 0.00 2.52
2193 2247 7.047460 AGATGCATCCACTTTTATCCATTTC 57.953 36.000 23.06 0.00 0.00 2.17
2194 2248 8.000709 TCTAGATGCATCCACTTTTATCCATTT 58.999 33.333 23.06 1.25 0.00 2.32
2195 2249 7.520798 TCTAGATGCATCCACTTTTATCCATT 58.479 34.615 23.06 1.91 0.00 3.16
2196 2250 7.083062 TCTAGATGCATCCACTTTTATCCAT 57.917 36.000 23.06 2.35 0.00 3.41
2197 2251 6.499106 TCTAGATGCATCCACTTTTATCCA 57.501 37.500 23.06 0.00 0.00 3.41
2198 2252 6.995091 AGTTCTAGATGCATCCACTTTTATCC 59.005 38.462 23.06 1.70 0.00 2.59
2199 2253 9.547753 TTAGTTCTAGATGCATCCACTTTTATC 57.452 33.333 23.06 5.56 0.00 1.75
2200 2254 9.905713 TTTAGTTCTAGATGCATCCACTTTTAT 57.094 29.630 23.06 4.58 0.00 1.40
2201 2255 9.733556 TTTTAGTTCTAGATGCATCCACTTTTA 57.266 29.630 23.06 6.97 0.00 1.52
2202 2256 8.635765 TTTTAGTTCTAGATGCATCCACTTTT 57.364 30.769 23.06 6.10 0.00 2.27
2203 2257 8.814038 ATTTTAGTTCTAGATGCATCCACTTT 57.186 30.769 23.06 6.85 0.00 2.66
2204 2258 9.905713 TTATTTTAGTTCTAGATGCATCCACTT 57.094 29.630 23.06 7.24 0.00 3.16
2205 2259 9.905713 TTTATTTTAGTTCTAGATGCATCCACT 57.094 29.630 23.06 19.78 0.00 4.00
2232 2286 9.698309 CGGAGAAATAGATGTTTCTACACATAT 57.302 33.333 12.91 0.00 45.38 1.78
2233 2287 8.909923 TCGGAGAAATAGATGTTTCTACACATA 58.090 33.333 12.91 0.00 45.38 2.29
2234 2288 7.707035 GTCGGAGAAATAGATGTTTCTACACAT 59.293 37.037 12.91 0.00 45.38 3.21
2235 2289 7.033791 GTCGGAGAAATAGATGTTTCTACACA 58.966 38.462 12.91 0.00 45.38 3.72
2236 2290 7.033791 TGTCGGAGAAATAGATGTTTCTACAC 58.966 38.462 12.91 10.45 45.38 2.90
2237 2291 7.165460 TGTCGGAGAAATAGATGTTTCTACA 57.835 36.000 12.91 8.02 45.38 2.74
2238 2292 7.760340 ACTTGTCGGAGAAATAGATGTTTCTAC 59.240 37.037 4.77 4.70 45.72 2.59
2239 2293 7.837863 ACTTGTCGGAGAAATAGATGTTTCTA 58.162 34.615 4.77 0.00 45.72 2.10
2241 2295 6.969828 ACTTGTCGGAGAAATAGATGTTTC 57.030 37.500 0.00 0.00 39.69 2.78
2242 2296 9.449719 AAATACTTGTCGGAGAAATAGATGTTT 57.550 29.630 0.00 0.00 39.69 2.83
2243 2297 9.099454 GAAATACTTGTCGGAGAAATAGATGTT 57.901 33.333 0.00 0.00 39.69 2.71
2244 2298 7.435488 CGAAATACTTGTCGGAGAAATAGATGT 59.565 37.037 0.00 0.00 39.69 3.06
2245 2299 7.778386 CGAAATACTTGTCGGAGAAATAGATG 58.222 38.462 0.00 0.00 39.69 2.90
2246 2300 7.932120 CGAAATACTTGTCGGAGAAATAGAT 57.068 36.000 0.00 0.00 39.69 1.98
2257 2311 1.135315 TCCGTCCCGAAATACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
2258 2312 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
2259 2313 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
2260 2314 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
2261 2315 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
2262 2316 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
2263 2317 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
2264 2318 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
2265 2319 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
2266 2320 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
2267 2321 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
2268 2322 1.856539 AAGTACTCCCTCCGTCCCGA 61.857 60.000 0.00 0.00 0.00 5.14
2269 2323 0.969409 AAAGTACTCCCTCCGTCCCG 60.969 60.000 0.00 0.00 0.00 5.14
2270 2324 0.535797 CAAAGTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
2271 2325 1.553706 TCAAAGTACTCCCTCCGTCC 58.446 55.000 0.00 0.00 0.00 4.79
2272 2326 3.586892 CTTTCAAAGTACTCCCTCCGTC 58.413 50.000 0.00 0.00 0.00 4.79
2273 2327 2.302157 CCTTTCAAAGTACTCCCTCCGT 59.698 50.000 0.00 0.00 0.00 4.69
2274 2328 2.354805 CCCTTTCAAAGTACTCCCTCCG 60.355 54.545 0.00 0.00 0.00 4.63
2275 2329 2.643304 ACCCTTTCAAAGTACTCCCTCC 59.357 50.000 0.00 0.00 0.00 4.30
2276 2330 4.368565 AACCCTTTCAAAGTACTCCCTC 57.631 45.455 0.00 0.00 0.00 4.30
2277 2331 4.808767 AAACCCTTTCAAAGTACTCCCT 57.191 40.909 0.00 0.00 0.00 4.20
2278 2332 5.008331 CCTAAACCCTTTCAAAGTACTCCC 58.992 45.833 0.00 0.00 0.00 4.30
2279 2333 4.458295 GCCTAAACCCTTTCAAAGTACTCC 59.542 45.833 0.00 0.00 0.00 3.85
2280 2334 5.181433 CAGCCTAAACCCTTTCAAAGTACTC 59.819 44.000 0.00 0.00 0.00 2.59
2281 2335 5.070685 CAGCCTAAACCCTTTCAAAGTACT 58.929 41.667 0.00 0.00 0.00 2.73
2282 2336 4.321008 GCAGCCTAAACCCTTTCAAAGTAC 60.321 45.833 0.00 0.00 0.00 2.73
2285 2339 2.893489 AGCAGCCTAAACCCTTTCAAAG 59.107 45.455 0.00 0.00 0.00 2.77
2341 2395 2.083002 CTTGAGAAAGCCAAGCTCCTC 58.917 52.381 10.31 10.31 38.25 3.71
2342 2396 1.701847 TCTTGAGAAAGCCAAGCTCCT 59.298 47.619 0.00 0.00 38.25 3.69
2343 2397 2.191128 TCTTGAGAAAGCCAAGCTCC 57.809 50.000 0.00 0.00 38.25 4.70
2344 2398 5.886960 TTATTCTTGAGAAAGCCAAGCTC 57.113 39.130 0.00 0.00 38.25 4.09
2345 2399 6.655078 TTTTATTCTTGAGAAAGCCAAGCT 57.345 33.333 0.00 0.00 42.56 3.74
2346 2400 6.367149 CCTTTTTATTCTTGAGAAAGCCAAGC 59.633 38.462 0.00 0.00 40.45 4.01
2347 2401 6.870439 CCCTTTTTATTCTTGAGAAAGCCAAG 59.130 38.462 0.00 0.00 41.63 3.61
2348 2402 6.553100 TCCCTTTTTATTCTTGAGAAAGCCAA 59.447 34.615 0.00 0.00 37.61 4.52
2349 2403 6.074648 TCCCTTTTTATTCTTGAGAAAGCCA 58.925 36.000 0.00 0.00 37.61 4.75
2350 2404 6.590234 TCCCTTTTTATTCTTGAGAAAGCC 57.410 37.500 0.00 0.00 37.61 4.35
2375 2429 4.265904 TGATTCAGGCTCGAACAAGTAA 57.734 40.909 2.25 0.00 0.00 2.24
2380 2434 3.133542 AGATGATGATTCAGGCTCGAACA 59.866 43.478 2.25 4.07 34.73 3.18
2409 2463 8.204160 GCCACAAATATAAATAGGAAAAGGCTT 58.796 33.333 0.00 0.00 32.49 4.35
2410 2464 7.565029 AGCCACAAATATAAATAGGAAAAGGCT 59.435 33.333 0.00 0.00 40.12 4.58
2422 2476 9.868277 CCAGACATTTTTAGCCACAAATATAAA 57.132 29.630 0.00 0.00 0.00 1.40
2431 2485 3.306019 CCCAACCAGACATTTTTAGCCAC 60.306 47.826 0.00 0.00 0.00 5.01
2448 2502 6.764308 ACATATATTATGCAGCATCCCAAC 57.236 37.500 12.38 0.00 0.00 3.77
2512 2616 6.540189 GTCCAGCAGAGAAAGCTTAATGATTA 59.460 38.462 0.00 0.00 41.14 1.75
2561 2665 2.871022 CTCTTAGTCTGCCATGTCATGC 59.129 50.000 7.35 4.05 0.00 4.06
2584 2688 5.373222 TGCACTTTTAAGAGAAGCCTTACA 58.627 37.500 0.00 0.00 0.00 2.41
2601 2726 4.157289 CAGTTGCTCAATAGGATTGCACTT 59.843 41.667 0.00 0.00 33.13 3.16
2615 2740 2.286950 GCGACATTTTCACAGTTGCTCA 60.287 45.455 0.00 0.00 39.12 4.26
2621 2746 4.314961 TGTATCAGCGACATTTTCACAGT 58.685 39.130 0.00 0.00 0.00 3.55
2622 2747 4.389992 ACTGTATCAGCGACATTTTCACAG 59.610 41.667 0.00 0.00 37.48 3.66
2634 2759 1.086067 CCAGCACCACTGTATCAGCG 61.086 60.000 0.00 0.00 45.68 5.18
2678 2803 4.058721 TGGTTGTATGACTGATGGATCG 57.941 45.455 0.00 0.00 0.00 3.69
2681 2806 6.806668 TCTATTGGTTGTATGACTGATGGA 57.193 37.500 0.00 0.00 0.00 3.41
2685 2810 8.204160 CCTTACATCTATTGGTTGTATGACTGA 58.796 37.037 0.00 0.00 32.30 3.41
2688 2813 6.765989 TGCCTTACATCTATTGGTTGTATGAC 59.234 38.462 0.00 0.00 32.30 3.06
2693 2818 6.767902 CAGTATGCCTTACATCTATTGGTTGT 59.232 38.462 0.00 0.00 40.38 3.32
2694 2819 7.194607 CAGTATGCCTTACATCTATTGGTTG 57.805 40.000 0.00 0.00 40.38 3.77
2729 2854 3.442625 ACGATCGAACATGAAGGTACTCA 59.557 43.478 24.34 0.00 38.49 3.41
2732 2857 4.918037 AGTACGATCGAACATGAAGGTAC 58.082 43.478 24.34 9.46 33.93 3.34
2743 2868 2.004733 TCTCTTGCGAGTACGATCGAA 58.995 47.619 24.34 2.25 45.56 3.71
2781 2906 5.479724 TCCATGCCTTGAACAATGACATTTA 59.520 36.000 0.00 0.00 0.00 1.40
2786 2911 5.581126 TTATCCATGCCTTGAACAATGAC 57.419 39.130 0.00 0.00 0.00 3.06
2789 2914 5.895534 AGACATTATCCATGCCTTGAACAAT 59.104 36.000 0.00 0.00 36.14 2.71
2813 2956 7.396055 CAGGAAATGTAGGAAAAGGTTATCCAA 59.604 37.037 0.00 0.00 38.23 3.53
2821 2964 2.423538 CGGCAGGAAATGTAGGAAAAGG 59.576 50.000 0.00 0.00 0.00 3.11
2830 2973 2.485677 CTGATGCGGCAGGAAATGT 58.514 52.632 9.25 0.00 32.26 2.71
2845 2989 2.395988 ATCACTGTGCAACGCCCTGA 62.396 55.000 2.12 0.00 42.39 3.86
2847 2991 1.228245 AATCACTGTGCAACGCCCT 60.228 52.632 2.12 0.00 42.39 5.19
2851 2995 3.498397 AGTAAAGGAATCACTGTGCAACG 59.502 43.478 2.12 0.00 42.39 4.10
2882 3026 3.005050 AGTTGGTCAATGACACAGCAATG 59.995 43.478 15.86 0.00 33.68 2.82
2883 3027 3.005050 CAGTTGGTCAATGACACAGCAAT 59.995 43.478 15.86 0.00 33.68 3.56
2888 3032 1.948834 CTGCAGTTGGTCAATGACACA 59.051 47.619 15.86 7.98 33.68 3.72
2890 3034 2.346766 ACTGCAGTTGGTCAATGACA 57.653 45.000 15.25 0.00 33.68 3.58
2903 3047 2.547211 CAGTTGACAGAGGAAACTGCAG 59.453 50.000 13.48 13.48 42.93 4.41
2918 3062 4.651778 AGCAGTATTACCTTTGCAGTTGA 58.348 39.130 8.65 0.00 38.97 3.18
3023 3167 4.994852 TGCAAAGATAAACTAAGTCGCTGT 59.005 37.500 0.00 0.00 0.00 4.40
3090 3238 7.169813 CAGGTTCTTTTCATAAAAACCTTGCTC 59.830 37.037 2.45 0.00 39.72 4.26
3316 3464 2.019249 TGCATCCTTACAATCAGCAGC 58.981 47.619 0.00 0.00 0.00 5.25
3375 3523 4.319177 AGTTCTGTAATGAGGCAAGTGAC 58.681 43.478 0.00 0.00 0.00 3.67
3407 3555 5.590530 AGGAGAAGTCATCATGTCAGTAC 57.409 43.478 0.00 0.00 0.00 2.73
3553 3710 7.402054 TCATTACCGATGCCATTAAGGATTAT 58.598 34.615 2.49 0.00 40.02 1.28
3627 3784 4.571984 TGGATCATGCGATGTACAGAAAAG 59.428 41.667 0.33 0.00 29.66 2.27
3633 3790 3.871006 GAGTTTGGATCATGCGATGTACA 59.129 43.478 0.00 0.00 29.66 2.90
3696 3853 6.710744 GGATTTTTCAGAACACTGGAAGAGTA 59.289 38.462 0.00 0.00 36.50 2.59
3716 3873 6.944290 TCAAGAGAAAGACATCACATGGATTT 59.056 34.615 0.00 0.00 32.57 2.17
3769 3926 4.281688 TCATTTTCTTTCTTTGGGCCTGAG 59.718 41.667 4.53 2.37 0.00 3.35
3818 3975 3.943381 CAGAAGCTGGAAATGAGTATGCA 59.057 43.478 0.00 0.00 0.00 3.96
3866 4023 2.461695 AGTGGTCTGTCATGGAGGTAG 58.538 52.381 0.00 0.00 0.00 3.18
3872 4029 5.678583 AGATAATCAAGTGGTCTGTCATGG 58.321 41.667 0.00 0.00 0.00 3.66
3986 6709 8.791327 TCACTGCATAAATCAAGATAAACAGA 57.209 30.769 0.00 0.00 0.00 3.41
4040 6763 3.944055 ACTGCTAGCTTATATGGACGG 57.056 47.619 17.23 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.