Multiple sequence alignment - TraesCS5D01G249300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G249300 chr5D 100.000 3388 0 0 1 3388 356120183 356116796 0.000000e+00 6257.0
1 TraesCS5D01G249300 chr5D 97.874 2728 29 4 687 3388 422770367 422773091 0.000000e+00 4689.0
2 TraesCS5D01G249300 chr5D 97.259 2736 34 8 682 3388 282366260 282368983 0.000000e+00 4599.0
3 TraesCS5D01G249300 chr5D 97.352 2719 32 4 688 3366 52374527 52371809 0.000000e+00 4586.0
4 TraesCS5D01G249300 chr5D 97.570 535 12 1 153 687 356111384 356110851 0.000000e+00 915.0
5 TraesCS5D01G249300 chr5D 95.857 531 21 1 153 683 356110469 356109940 0.000000e+00 857.0
6 TraesCS5D01G249300 chr5D 92.308 507 39 0 153 659 356109554 356109048 0.000000e+00 721.0
7 TraesCS5D01G249300 chr4D 97.628 2740 27 7 684 3388 392724849 392722113 0.000000e+00 4665.0
8 TraesCS5D01G249300 chr7D 97.653 2727 31 4 688 3388 634767843 634770562 0.000000e+00 4650.0
9 TraesCS5D01G249300 chr7D 96.999 2732 46 5 688 3388 538836051 538838777 0.000000e+00 4558.0
10 TraesCS5D01G249300 chr7D 96.990 2724 33 3 688 3388 426837236 426834539 0.000000e+00 4530.0
11 TraesCS5D01G249300 chr7D 96.748 2737 52 6 688 3388 112191309 112188574 0.000000e+00 4527.0
12 TraesCS5D01G249300 chr7D 96.962 1679 37 4 689 2353 445228926 445230604 0.000000e+00 2806.0
13 TraesCS5D01G249300 chr3D 97.685 2721 34 4 688 3385 52842442 52845156 0.000000e+00 4649.0
14 TraesCS5D01G249300 chr3D 98.865 1057 12 0 2332 3388 534218086 534217030 0.000000e+00 1886.0
15 TraesCS5D01G249300 chr5A 96.582 2721 70 10 685 3388 546845985 546848699 0.000000e+00 4488.0
16 TraesCS5D01G249300 chr5A 96.133 2715 89 7 688 3388 640389061 640386349 0.000000e+00 4418.0
17 TraesCS5D01G249300 chr5A 96.821 2013 51 3 1385 3388 593748119 593750127 0.000000e+00 3350.0
18 TraesCS5D01G249300 chr2A 95.354 1980 72 8 685 2654 739802157 739804126 0.000000e+00 3129.0
19 TraesCS5D01G249300 chr2A 89.641 502 52 0 158 659 21936187 21936688 1.030000e-179 640.0
20 TraesCS5D01G249300 chr1A 89.222 501 54 0 158 658 13164072 13163572 7.980000e-176 627.0
21 TraesCS5D01G249300 chr6A 89.044 502 55 0 158 659 563494039 563493538 1.030000e-174 623.0
22 TraesCS5D01G249300 chr4B 89.066 503 54 1 158 659 168265435 168265937 1.030000e-174 623.0
23 TraesCS5D01G249300 chr5B 88.845 502 56 0 158 659 668595575 668596076 4.800000e-173 617.0
24 TraesCS5D01G249300 chr5B 88.446 502 58 0 158 659 551701051 551701552 1.040000e-169 606.0
25 TraesCS5D01G249300 chr5B 89.744 78 4 3 1 78 420922781 420922854 2.780000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G249300 chr5D 356116796 356120183 3387 True 6257 6257 100.000 1 3388 1 chr5D.!!$R2 3387
1 TraesCS5D01G249300 chr5D 422770367 422773091 2724 False 4689 4689 97.874 687 3388 1 chr5D.!!$F2 2701
2 TraesCS5D01G249300 chr5D 282366260 282368983 2723 False 4599 4599 97.259 682 3388 1 chr5D.!!$F1 2706
3 TraesCS5D01G249300 chr5D 52371809 52374527 2718 True 4586 4586 97.352 688 3366 1 chr5D.!!$R1 2678
4 TraesCS5D01G249300 chr5D 356109048 356111384 2336 True 831 915 95.245 153 687 3 chr5D.!!$R3 534
5 TraesCS5D01G249300 chr4D 392722113 392724849 2736 True 4665 4665 97.628 684 3388 1 chr4D.!!$R1 2704
6 TraesCS5D01G249300 chr7D 634767843 634770562 2719 False 4650 4650 97.653 688 3388 1 chr7D.!!$F3 2700
7 TraesCS5D01G249300 chr7D 538836051 538838777 2726 False 4558 4558 96.999 688 3388 1 chr7D.!!$F2 2700
8 TraesCS5D01G249300 chr7D 426834539 426837236 2697 True 4530 4530 96.990 688 3388 1 chr7D.!!$R2 2700
9 TraesCS5D01G249300 chr7D 112188574 112191309 2735 True 4527 4527 96.748 688 3388 1 chr7D.!!$R1 2700
10 TraesCS5D01G249300 chr7D 445228926 445230604 1678 False 2806 2806 96.962 689 2353 1 chr7D.!!$F1 1664
11 TraesCS5D01G249300 chr3D 52842442 52845156 2714 False 4649 4649 97.685 688 3385 1 chr3D.!!$F1 2697
12 TraesCS5D01G249300 chr3D 534217030 534218086 1056 True 1886 1886 98.865 2332 3388 1 chr3D.!!$R1 1056
13 TraesCS5D01G249300 chr5A 546845985 546848699 2714 False 4488 4488 96.582 685 3388 1 chr5A.!!$F1 2703
14 TraesCS5D01G249300 chr5A 640386349 640389061 2712 True 4418 4418 96.133 688 3388 1 chr5A.!!$R1 2700
15 TraesCS5D01G249300 chr5A 593748119 593750127 2008 False 3350 3350 96.821 1385 3388 1 chr5A.!!$F2 2003
16 TraesCS5D01G249300 chr2A 739802157 739804126 1969 False 3129 3129 95.354 685 2654 1 chr2A.!!$F2 1969
17 TraesCS5D01G249300 chr2A 21936187 21936688 501 False 640 640 89.641 158 659 1 chr2A.!!$F1 501
18 TraesCS5D01G249300 chr1A 13163572 13164072 500 True 627 627 89.222 158 658 1 chr1A.!!$R1 500
19 TraesCS5D01G249300 chr6A 563493538 563494039 501 True 623 623 89.044 158 659 1 chr6A.!!$R1 501
20 TraesCS5D01G249300 chr4B 168265435 168265937 502 False 623 623 89.066 158 659 1 chr4B.!!$F1 501
21 TraesCS5D01G249300 chr5B 668595575 668596076 501 False 617 617 88.845 158 659 1 chr5B.!!$F3 501
22 TraesCS5D01G249300 chr5B 551701051 551701552 501 False 606 606 88.446 158 659 1 chr5B.!!$F2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 631 0.036164 TCAAGTCCCGGACAATGTGG 59.964 55.0 19.95 0.0 34.6 4.17 F
637 638 0.888736 CCGGACAATGTGGCAAGTGA 60.889 55.0 0.00 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 1552 1.531149 CCACACCAGCTTTGTACTTCG 59.469 52.381 0.0 0.0 0.00 3.79 R
2498 3543 5.532779 GCAGCAGGCTTAGATAATAAGGTTT 59.467 40.000 0.0 0.0 40.25 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.191908 TTGTTGGCAGGTCGCTGT 59.808 55.556 0.00 0.00 41.91 4.40
18 19 1.453015 TTGTTGGCAGGTCGCTGTT 60.453 52.632 0.00 0.00 41.91 3.16
19 20 0.179043 TTGTTGGCAGGTCGCTGTTA 60.179 50.000 0.00 0.00 41.91 2.41
20 21 0.882927 TGTTGGCAGGTCGCTGTTAC 60.883 55.000 0.00 0.00 41.91 2.50
21 22 1.666553 TTGGCAGGTCGCTGTTACG 60.667 57.895 0.00 0.00 41.91 3.18
22 23 2.813908 GGCAGGTCGCTGTTACGG 60.814 66.667 0.00 0.00 41.91 4.02
23 24 2.260434 GCAGGTCGCTGTTACGGA 59.740 61.111 0.00 0.00 37.77 4.69
24 25 1.805945 GCAGGTCGCTGTTACGGAG 60.806 63.158 0.00 0.00 37.77 4.63
25 26 1.880894 CAGGTCGCTGTTACGGAGA 59.119 57.895 0.00 0.00 0.00 3.71
26 27 0.179161 CAGGTCGCTGTTACGGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
27 28 0.322277 AGGTCGCTGTTACGGAGAGA 60.322 55.000 0.00 0.00 0.00 3.10
28 29 0.099082 GGTCGCTGTTACGGAGAGAG 59.901 60.000 0.00 0.00 0.00 3.20
29 30 1.085091 GTCGCTGTTACGGAGAGAGA 58.915 55.000 0.00 0.00 0.00 3.10
30 31 1.062880 GTCGCTGTTACGGAGAGAGAG 59.937 57.143 0.00 0.00 28.31 3.20
31 32 1.066358 TCGCTGTTACGGAGAGAGAGA 60.066 52.381 0.00 0.00 0.00 3.10
32 33 1.329292 CGCTGTTACGGAGAGAGAGAG 59.671 57.143 0.00 0.00 0.00 3.20
33 34 2.634600 GCTGTTACGGAGAGAGAGAGA 58.365 52.381 0.00 0.00 0.00 3.10
34 35 2.612212 GCTGTTACGGAGAGAGAGAGAG 59.388 54.545 0.00 0.00 0.00 3.20
35 36 2.612212 CTGTTACGGAGAGAGAGAGAGC 59.388 54.545 0.00 0.00 0.00 4.09
36 37 2.237643 TGTTACGGAGAGAGAGAGAGCT 59.762 50.000 0.00 0.00 0.00 4.09
37 38 2.612212 GTTACGGAGAGAGAGAGAGCTG 59.388 54.545 0.00 0.00 0.00 4.24
38 39 0.107214 ACGGAGAGAGAGAGAGCTGG 60.107 60.000 0.00 0.00 0.00 4.85
39 40 1.447317 CGGAGAGAGAGAGAGCTGGC 61.447 65.000 0.00 0.00 0.00 4.85
40 41 1.447317 GGAGAGAGAGAGAGCTGGCG 61.447 65.000 0.00 0.00 0.00 5.69
41 42 0.463654 GAGAGAGAGAGAGCTGGCGA 60.464 60.000 0.00 0.00 0.00 5.54
42 43 0.183492 AGAGAGAGAGAGCTGGCGAT 59.817 55.000 0.00 0.00 0.00 4.58
43 44 0.311790 GAGAGAGAGAGCTGGCGATG 59.688 60.000 0.00 0.00 0.00 3.84
44 45 1.108727 AGAGAGAGAGCTGGCGATGG 61.109 60.000 0.00 0.00 0.00 3.51
45 46 2.086251 GAGAGAGAGCTGGCGATGGG 62.086 65.000 0.00 0.00 0.00 4.00
46 47 2.042537 AGAGAGCTGGCGATGGGA 60.043 61.111 0.00 0.00 0.00 4.37
47 48 1.459158 AGAGAGCTGGCGATGGGAT 60.459 57.895 0.00 0.00 0.00 3.85
48 49 1.005156 GAGAGCTGGCGATGGGATC 60.005 63.158 0.00 0.00 0.00 3.36
49 50 1.459158 AGAGCTGGCGATGGGATCT 60.459 57.895 0.00 0.00 0.00 2.75
50 51 1.301558 GAGCTGGCGATGGGATCTG 60.302 63.158 0.00 0.00 0.00 2.90
51 52 2.281345 GCTGGCGATGGGATCTGG 60.281 66.667 0.00 0.00 0.00 3.86
52 53 2.811514 GCTGGCGATGGGATCTGGA 61.812 63.158 0.00 0.00 0.00 3.86
53 54 1.370437 CTGGCGATGGGATCTGGAG 59.630 63.158 0.00 0.00 0.00 3.86
54 55 1.075301 TGGCGATGGGATCTGGAGA 60.075 57.895 0.00 0.00 0.00 3.71
55 56 1.117749 TGGCGATGGGATCTGGAGAG 61.118 60.000 0.00 0.00 0.00 3.20
56 57 0.829602 GGCGATGGGATCTGGAGAGA 60.830 60.000 0.00 0.00 0.00 3.10
57 58 1.265236 GCGATGGGATCTGGAGAGAT 58.735 55.000 0.00 0.00 42.02 2.75
65 66 1.039068 ATCTGGAGAGATCTGGTGCG 58.961 55.000 0.00 0.00 33.20 5.34
66 67 1.039785 TCTGGAGAGATCTGGTGCGG 61.040 60.000 0.00 0.00 0.00 5.69
67 68 2.025767 CTGGAGAGATCTGGTGCGGG 62.026 65.000 0.00 0.00 0.00 6.13
68 69 2.060980 GGAGAGATCTGGTGCGGGT 61.061 63.158 0.00 0.00 0.00 5.28
69 70 1.439644 GAGAGATCTGGTGCGGGTC 59.560 63.158 0.00 0.00 0.00 4.46
70 71 2.105128 GAGATCTGGTGCGGGTCG 59.895 66.667 0.00 0.00 0.00 4.79
71 72 3.432051 GAGATCTGGTGCGGGTCGG 62.432 68.421 0.00 0.00 0.00 4.79
72 73 4.530857 GATCTGGTGCGGGTCGGG 62.531 72.222 0.00 0.00 0.00 5.14
75 76 4.636435 CTGGTGCGGGTCGGGTTT 62.636 66.667 0.00 0.00 0.00 3.27
76 77 4.629523 TGGTGCGGGTCGGGTTTC 62.630 66.667 0.00 0.00 0.00 2.78
77 78 4.629523 GGTGCGGGTCGGGTTTCA 62.630 66.667 0.00 0.00 0.00 2.69
78 79 3.047877 GTGCGGGTCGGGTTTCAG 61.048 66.667 0.00 0.00 0.00 3.02
79 80 3.552384 TGCGGGTCGGGTTTCAGT 61.552 61.111 0.00 0.00 0.00 3.41
80 81 2.741211 GCGGGTCGGGTTTCAGTC 60.741 66.667 0.00 0.00 0.00 3.51
81 82 2.431942 CGGGTCGGGTTTCAGTCG 60.432 66.667 0.00 0.00 0.00 4.18
82 83 2.922950 CGGGTCGGGTTTCAGTCGA 61.923 63.158 0.00 0.00 0.00 4.20
83 84 1.368579 GGGTCGGGTTTCAGTCGAA 59.631 57.895 0.00 0.00 34.62 3.71
84 85 0.947660 GGGTCGGGTTTCAGTCGAAC 60.948 60.000 0.00 0.00 39.59 3.95
85 86 1.280206 GGTCGGGTTTCAGTCGAACG 61.280 60.000 0.00 0.00 34.62 3.95
86 87 1.662446 TCGGGTTTCAGTCGAACGC 60.662 57.895 0.00 0.00 36.81 4.84
87 88 1.663702 CGGGTTTCAGTCGAACGCT 60.664 57.895 0.00 0.00 37.68 5.07
88 89 0.387622 CGGGTTTCAGTCGAACGCTA 60.388 55.000 0.00 0.00 37.68 4.26
89 90 1.066136 GGGTTTCAGTCGAACGCTAC 58.934 55.000 0.00 0.00 37.10 3.58
90 91 1.336609 GGGTTTCAGTCGAACGCTACT 60.337 52.381 0.00 0.00 37.10 2.57
91 92 2.401351 GGTTTCAGTCGAACGCTACTT 58.599 47.619 0.00 0.00 0.00 2.24
92 93 2.798847 GGTTTCAGTCGAACGCTACTTT 59.201 45.455 0.00 0.00 0.00 2.66
93 94 3.246936 GGTTTCAGTCGAACGCTACTTTT 59.753 43.478 0.00 0.00 0.00 2.27
94 95 4.260497 GGTTTCAGTCGAACGCTACTTTTT 60.260 41.667 0.00 0.00 0.00 1.94
95 96 4.703899 TTCAGTCGAACGCTACTTTTTC 57.296 40.909 0.00 0.00 0.00 2.29
96 97 3.973657 TCAGTCGAACGCTACTTTTTCT 58.026 40.909 0.00 0.00 0.00 2.52
97 98 4.365723 TCAGTCGAACGCTACTTTTTCTT 58.634 39.130 0.00 0.00 0.00 2.52
98 99 5.522456 TCAGTCGAACGCTACTTTTTCTTA 58.478 37.500 0.00 0.00 0.00 2.10
99 100 5.628193 TCAGTCGAACGCTACTTTTTCTTAG 59.372 40.000 0.00 0.00 0.00 2.18
100 101 4.385146 AGTCGAACGCTACTTTTTCTTAGC 59.615 41.667 0.00 0.00 37.87 3.09
101 102 4.149396 GTCGAACGCTACTTTTTCTTAGCA 59.851 41.667 0.00 0.00 40.75 3.49
102 103 4.149396 TCGAACGCTACTTTTTCTTAGCAC 59.851 41.667 1.86 0.00 40.75 4.40
103 104 4.665897 CGAACGCTACTTTTTCTTAGCACC 60.666 45.833 1.86 0.00 40.75 5.01
104 105 2.735134 ACGCTACTTTTTCTTAGCACCG 59.265 45.455 1.86 0.00 40.75 4.94
105 106 2.991190 CGCTACTTTTTCTTAGCACCGA 59.009 45.455 1.86 0.00 40.75 4.69
106 107 3.617263 CGCTACTTTTTCTTAGCACCGAT 59.383 43.478 1.86 0.00 40.75 4.18
107 108 4.259850 CGCTACTTTTTCTTAGCACCGATC 60.260 45.833 1.86 0.00 40.75 3.69
108 109 4.259850 GCTACTTTTTCTTAGCACCGATCG 60.260 45.833 8.51 8.51 40.48 3.69
109 110 3.921677 ACTTTTTCTTAGCACCGATCGA 58.078 40.909 18.66 0.00 0.00 3.59
110 111 4.312443 ACTTTTTCTTAGCACCGATCGAA 58.688 39.130 18.66 0.81 0.00 3.71
111 112 4.151867 ACTTTTTCTTAGCACCGATCGAAC 59.848 41.667 18.66 5.23 0.00 3.95
112 113 3.306917 TTTCTTAGCACCGATCGAACA 57.693 42.857 18.66 0.00 0.00 3.18
113 114 2.273370 TCTTAGCACCGATCGAACAC 57.727 50.000 18.66 2.86 0.00 3.32
114 115 1.816835 TCTTAGCACCGATCGAACACT 59.183 47.619 18.66 10.62 0.00 3.55
115 116 3.011818 TCTTAGCACCGATCGAACACTA 58.988 45.455 18.66 9.61 0.00 2.74
116 117 2.838386 TAGCACCGATCGAACACTAC 57.162 50.000 18.66 0.00 0.00 2.73
117 118 1.174783 AGCACCGATCGAACACTACT 58.825 50.000 18.66 0.83 0.00 2.57
118 119 1.135373 AGCACCGATCGAACACTACTG 60.135 52.381 18.66 0.00 0.00 2.74
119 120 1.909376 CACCGATCGAACACTACTGG 58.091 55.000 18.66 0.00 0.00 4.00
120 121 1.201647 CACCGATCGAACACTACTGGT 59.798 52.381 18.66 0.00 0.00 4.00
130 131 1.453155 CACTACTGGTGGGAATGTGC 58.547 55.000 0.00 0.00 41.90 4.57
131 132 0.328258 ACTACTGGTGGGAATGTGCC 59.672 55.000 0.00 0.00 0.00 5.01
132 133 0.744414 CTACTGGTGGGAATGTGCCG 60.744 60.000 0.00 0.00 0.00 5.69
133 134 1.195442 TACTGGTGGGAATGTGCCGA 61.195 55.000 0.00 0.00 0.00 5.54
134 135 1.303236 CTGGTGGGAATGTGCCGAA 60.303 57.895 0.00 0.00 0.00 4.30
135 136 0.893270 CTGGTGGGAATGTGCCGAAA 60.893 55.000 0.00 0.00 0.00 3.46
136 137 0.893270 TGGTGGGAATGTGCCGAAAG 60.893 55.000 0.00 0.00 0.00 2.62
137 138 0.893727 GGTGGGAATGTGCCGAAAGT 60.894 55.000 0.00 0.00 0.00 2.66
138 139 0.958822 GTGGGAATGTGCCGAAAGTT 59.041 50.000 0.00 0.00 0.00 2.66
139 140 1.339929 GTGGGAATGTGCCGAAAGTTT 59.660 47.619 0.00 0.00 0.00 2.66
140 141 2.035632 TGGGAATGTGCCGAAAGTTTT 58.964 42.857 0.00 0.00 0.00 2.43
141 142 2.432510 TGGGAATGTGCCGAAAGTTTTT 59.567 40.909 0.00 0.00 0.00 1.94
253 254 6.253746 CAGTCTATGAGAAGCCAAATTTTCG 58.746 40.000 0.00 0.00 0.00 3.46
255 256 5.123979 GTCTATGAGAAGCCAAATTTTCGGT 59.876 40.000 0.00 0.00 0.00 4.69
256 257 3.915437 TGAGAAGCCAAATTTTCGGTC 57.085 42.857 0.00 0.00 0.00 4.79
257 258 2.225491 TGAGAAGCCAAATTTTCGGTCG 59.775 45.455 0.00 0.00 0.00 4.79
258 259 2.225727 GAGAAGCCAAATTTTCGGTCGT 59.774 45.455 0.00 0.00 0.00 4.34
259 260 2.225727 AGAAGCCAAATTTTCGGTCGTC 59.774 45.455 0.00 0.00 0.00 4.20
260 261 1.600023 AGCCAAATTTTCGGTCGTCA 58.400 45.000 0.00 0.00 0.00 4.35
261 262 1.535462 AGCCAAATTTTCGGTCGTCAG 59.465 47.619 0.00 0.00 0.00 3.51
262 263 1.265905 GCCAAATTTTCGGTCGTCAGT 59.734 47.619 0.00 0.00 0.00 3.41
263 264 2.664698 GCCAAATTTTCGGTCGTCAGTC 60.665 50.000 0.00 0.00 0.00 3.51
264 265 2.806244 CCAAATTTTCGGTCGTCAGTCT 59.194 45.455 0.00 0.00 0.00 3.24
265 266 3.991773 CCAAATTTTCGGTCGTCAGTCTA 59.008 43.478 0.00 0.00 0.00 2.59
266 267 4.630069 CCAAATTTTCGGTCGTCAGTCTAT 59.370 41.667 0.00 0.00 0.00 1.98
267 268 5.808540 CCAAATTTTCGGTCGTCAGTCTATA 59.191 40.000 0.00 0.00 0.00 1.31
268 269 6.019801 CCAAATTTTCGGTCGTCAGTCTATAG 60.020 42.308 0.00 0.00 0.00 1.31
269 270 5.831702 ATTTTCGGTCGTCAGTCTATAGT 57.168 39.130 0.00 0.00 0.00 2.12
270 271 6.932356 ATTTTCGGTCGTCAGTCTATAGTA 57.068 37.500 0.00 0.00 0.00 1.82
271 272 5.980698 TTTCGGTCGTCAGTCTATAGTAG 57.019 43.478 0.00 0.00 0.00 2.57
272 273 4.926140 TCGGTCGTCAGTCTATAGTAGA 57.074 45.455 0.00 0.00 0.00 2.59
273 274 5.465532 TCGGTCGTCAGTCTATAGTAGAT 57.534 43.478 0.00 0.00 37.13 1.98
274 275 5.468592 TCGGTCGTCAGTCTATAGTAGATC 58.531 45.833 0.00 0.00 37.13 2.75
275 276 5.010415 TCGGTCGTCAGTCTATAGTAGATCA 59.990 44.000 0.00 0.00 37.13 2.92
276 277 5.695363 CGGTCGTCAGTCTATAGTAGATCAA 59.305 44.000 0.00 0.00 37.13 2.57
277 278 6.369340 CGGTCGTCAGTCTATAGTAGATCAAT 59.631 42.308 0.00 0.00 37.13 2.57
278 279 7.095144 CGGTCGTCAGTCTATAGTAGATCAATT 60.095 40.741 0.00 0.00 37.13 2.32
279 280 8.569641 GGTCGTCAGTCTATAGTAGATCAATTT 58.430 37.037 0.00 0.00 37.13 1.82
307 308 9.449719 AAATTGAAATATTCACTTCCTAGACGT 57.550 29.630 0.00 0.00 39.87 4.34
308 309 9.449719 AATTGAAATATTCACTTCCTAGACGTT 57.550 29.630 0.00 0.00 39.87 3.99
309 310 8.475331 TTGAAATATTCACTTCCTAGACGTTC 57.525 34.615 0.00 0.00 39.87 3.95
310 311 7.608153 TGAAATATTCACTTCCTAGACGTTCA 58.392 34.615 0.00 0.00 34.08 3.18
311 312 8.258007 TGAAATATTCACTTCCTAGACGTTCAT 58.742 33.333 0.00 0.00 34.08 2.57
312 313 8.425577 AAATATTCACTTCCTAGACGTTCATG 57.574 34.615 0.00 0.00 0.00 3.07
313 314 4.866508 TTCACTTCCTAGACGTTCATGT 57.133 40.909 0.00 0.00 0.00 3.21
314 315 4.866508 TCACTTCCTAGACGTTCATGTT 57.133 40.909 0.00 0.00 0.00 2.71
315 316 5.209818 TCACTTCCTAGACGTTCATGTTT 57.790 39.130 0.00 0.00 0.00 2.83
316 317 4.988540 TCACTTCCTAGACGTTCATGTTTG 59.011 41.667 0.00 0.00 0.00 2.93
317 318 4.750098 CACTTCCTAGACGTTCATGTTTGT 59.250 41.667 0.00 0.00 0.00 2.83
318 319 5.924254 CACTTCCTAGACGTTCATGTTTGTA 59.076 40.000 0.00 0.00 0.00 2.41
319 320 6.089551 CACTTCCTAGACGTTCATGTTTGTAG 59.910 42.308 0.00 0.00 0.00 2.74
320 321 5.068234 TCCTAGACGTTCATGTTTGTAGG 57.932 43.478 0.00 0.00 0.00 3.18
321 322 4.525487 TCCTAGACGTTCATGTTTGTAGGT 59.475 41.667 0.00 0.00 0.00 3.08
322 323 4.625742 CCTAGACGTTCATGTTTGTAGGTG 59.374 45.833 0.00 0.00 0.00 4.00
323 324 4.330944 AGACGTTCATGTTTGTAGGTGA 57.669 40.909 0.00 0.00 0.00 4.02
324 325 4.307432 AGACGTTCATGTTTGTAGGTGAG 58.693 43.478 0.00 0.00 0.00 3.51
325 326 4.056050 GACGTTCATGTTTGTAGGTGAGT 58.944 43.478 0.00 0.00 0.00 3.41
326 327 5.010314 AGACGTTCATGTTTGTAGGTGAGTA 59.990 40.000 0.00 0.00 0.00 2.59
327 328 5.790593 ACGTTCATGTTTGTAGGTGAGTAT 58.209 37.500 0.00 0.00 0.00 2.12
328 329 6.927416 ACGTTCATGTTTGTAGGTGAGTATA 58.073 36.000 0.00 0.00 0.00 1.47
329 330 7.380536 ACGTTCATGTTTGTAGGTGAGTATAA 58.619 34.615 0.00 0.00 0.00 0.98
330 331 7.544566 ACGTTCATGTTTGTAGGTGAGTATAAG 59.455 37.037 0.00 0.00 0.00 1.73
331 332 7.758076 CGTTCATGTTTGTAGGTGAGTATAAGA 59.242 37.037 0.00 0.00 0.00 2.10
332 333 9.431887 GTTCATGTTTGTAGGTGAGTATAAGAA 57.568 33.333 0.00 0.00 0.00 2.52
333 334 8.997621 TCATGTTTGTAGGTGAGTATAAGAAC 57.002 34.615 0.00 0.00 0.00 3.01
334 335 8.590204 TCATGTTTGTAGGTGAGTATAAGAACA 58.410 33.333 0.00 0.00 0.00 3.18
335 336 9.383519 CATGTTTGTAGGTGAGTATAAGAACAT 57.616 33.333 0.00 0.00 35.19 2.71
336 337 8.771920 TGTTTGTAGGTGAGTATAAGAACATG 57.228 34.615 0.00 0.00 0.00 3.21
337 338 7.333423 TGTTTGTAGGTGAGTATAAGAACATGC 59.667 37.037 0.00 0.00 0.00 4.06
338 339 6.791867 TGTAGGTGAGTATAAGAACATGCT 57.208 37.500 0.00 0.00 0.00 3.79
339 340 7.891498 TGTAGGTGAGTATAAGAACATGCTA 57.109 36.000 0.00 0.00 0.00 3.49
340 341 8.301252 TGTAGGTGAGTATAAGAACATGCTAA 57.699 34.615 0.00 0.00 0.00 3.09
341 342 8.924303 TGTAGGTGAGTATAAGAACATGCTAAT 58.076 33.333 0.00 0.00 0.00 1.73
342 343 9.413048 GTAGGTGAGTATAAGAACATGCTAATC 57.587 37.037 0.00 0.00 0.00 1.75
343 344 8.023021 AGGTGAGTATAAGAACATGCTAATCA 57.977 34.615 0.00 0.00 0.00 2.57
344 345 8.654997 AGGTGAGTATAAGAACATGCTAATCAT 58.345 33.333 0.00 0.00 35.31 2.45
345 346 9.277783 GGTGAGTATAAGAACATGCTAATCATT 57.722 33.333 0.00 0.00 31.79 2.57
349 350 9.499479 AGTATAAGAACATGCTAATCATTCTGG 57.501 33.333 0.00 0.00 31.79 3.86
350 351 9.277783 GTATAAGAACATGCTAATCATTCTGGT 57.722 33.333 0.00 0.00 31.79 4.00
351 352 8.757982 ATAAGAACATGCTAATCATTCTGGTT 57.242 30.769 0.00 0.00 31.79 3.67
352 353 7.472334 AAGAACATGCTAATCATTCTGGTTT 57.528 32.000 0.00 0.00 31.79 3.27
353 354 8.579850 AAGAACATGCTAATCATTCTGGTTTA 57.420 30.769 0.00 0.00 31.79 2.01
354 355 7.989826 AGAACATGCTAATCATTCTGGTTTAC 58.010 34.615 0.00 0.00 31.79 2.01
355 356 7.611467 AGAACATGCTAATCATTCTGGTTTACA 59.389 33.333 0.00 0.00 31.79 2.41
356 357 7.886629 ACATGCTAATCATTCTGGTTTACAT 57.113 32.000 0.00 0.00 31.79 2.29
357 358 7.709947 ACATGCTAATCATTCTGGTTTACATG 58.290 34.615 10.84 10.84 37.97 3.21
358 359 6.698008 TGCTAATCATTCTGGTTTACATGG 57.302 37.500 0.00 0.00 0.00 3.66
359 360 6.422333 TGCTAATCATTCTGGTTTACATGGA 58.578 36.000 0.00 0.00 0.00 3.41
360 361 7.062322 TGCTAATCATTCTGGTTTACATGGAT 58.938 34.615 0.00 0.00 0.00 3.41
361 362 7.013559 TGCTAATCATTCTGGTTTACATGGATG 59.986 37.037 0.00 0.00 0.00 3.51
362 363 6.720112 AATCATTCTGGTTTACATGGATGG 57.280 37.500 0.00 0.00 0.00 3.51
363 364 5.191727 TCATTCTGGTTTACATGGATGGT 57.808 39.130 0.00 0.00 0.00 3.55
364 365 4.949238 TCATTCTGGTTTACATGGATGGTG 59.051 41.667 0.00 0.00 0.00 4.17
365 366 4.649267 TTCTGGTTTACATGGATGGTGA 57.351 40.909 0.00 0.00 0.00 4.02
366 367 4.649267 TCTGGTTTACATGGATGGTGAA 57.351 40.909 0.00 0.00 0.00 3.18
367 368 4.588899 TCTGGTTTACATGGATGGTGAAG 58.411 43.478 0.00 0.00 0.00 3.02
368 369 4.042809 TCTGGTTTACATGGATGGTGAAGT 59.957 41.667 0.00 0.00 0.00 3.01
369 370 4.078537 TGGTTTACATGGATGGTGAAGTG 58.921 43.478 0.00 0.00 0.00 3.16
370 371 3.119495 GGTTTACATGGATGGTGAAGTGC 60.119 47.826 0.00 0.00 0.00 4.40
371 372 3.431673 TTACATGGATGGTGAAGTGCA 57.568 42.857 0.00 0.00 0.00 4.57
372 373 2.291209 ACATGGATGGTGAAGTGCAA 57.709 45.000 0.00 0.00 0.00 4.08
373 374 1.888512 ACATGGATGGTGAAGTGCAAC 59.111 47.619 0.00 0.00 33.72 4.17
378 379 3.817187 TGGTGAAGTGCAACATGGA 57.183 47.368 0.00 0.00 39.87 3.41
379 380 2.291209 TGGTGAAGTGCAACATGGAT 57.709 45.000 0.00 0.00 39.87 3.41
380 381 2.161855 TGGTGAAGTGCAACATGGATC 58.838 47.619 0.00 0.00 39.87 3.36
381 382 1.474077 GGTGAAGTGCAACATGGATCC 59.526 52.381 4.20 4.20 41.43 3.36
382 383 2.161855 GTGAAGTGCAACATGGATCCA 58.838 47.619 18.88 18.88 41.43 3.41
383 384 2.756760 GTGAAGTGCAACATGGATCCAT 59.243 45.455 22.15 22.15 41.43 3.41
399 400 3.414759 TCCATGGGTGTGGAGTATAGT 57.585 47.619 13.02 0.00 43.20 2.12
400 401 3.038280 TCCATGGGTGTGGAGTATAGTG 58.962 50.000 13.02 0.00 43.20 2.74
401 402 2.771943 CCATGGGTGTGGAGTATAGTGT 59.228 50.000 2.85 0.00 42.02 3.55
402 403 3.199946 CCATGGGTGTGGAGTATAGTGTT 59.800 47.826 2.85 0.00 42.02 3.32
403 404 4.442706 CATGGGTGTGGAGTATAGTGTTC 58.557 47.826 0.00 0.00 0.00 3.18
404 405 2.835764 TGGGTGTGGAGTATAGTGTTCC 59.164 50.000 0.00 0.00 0.00 3.62
405 406 3.105283 GGGTGTGGAGTATAGTGTTCCT 58.895 50.000 0.00 0.00 32.12 3.36
406 407 3.132467 GGGTGTGGAGTATAGTGTTCCTC 59.868 52.174 0.00 0.00 32.12 3.71
407 408 3.132467 GGTGTGGAGTATAGTGTTCCTCC 59.868 52.174 0.00 0.00 43.13 4.30
408 409 3.021695 TGTGGAGTATAGTGTTCCTCCG 58.978 50.000 0.00 0.00 45.27 4.63
409 410 3.285484 GTGGAGTATAGTGTTCCTCCGA 58.715 50.000 0.00 0.00 45.27 4.55
410 411 3.698040 GTGGAGTATAGTGTTCCTCCGAA 59.302 47.826 0.00 0.00 45.27 4.30
411 412 4.159135 GTGGAGTATAGTGTTCCTCCGAAA 59.841 45.833 0.00 0.00 45.27 3.46
412 413 4.960469 TGGAGTATAGTGTTCCTCCGAAAT 59.040 41.667 0.00 0.00 45.27 2.17
413 414 5.424252 TGGAGTATAGTGTTCCTCCGAAATT 59.576 40.000 0.00 0.00 45.27 1.82
414 415 6.608405 TGGAGTATAGTGTTCCTCCGAAATTA 59.392 38.462 0.00 0.00 45.27 1.40
415 416 7.124599 TGGAGTATAGTGTTCCTCCGAAATTAA 59.875 37.037 0.00 0.00 45.27 1.40
416 417 7.437565 GGAGTATAGTGTTCCTCCGAAATTAAC 59.562 40.741 0.00 0.00 34.62 2.01
417 418 7.844009 AGTATAGTGTTCCTCCGAAATTAACA 58.156 34.615 0.00 0.00 0.00 2.41
418 419 6.980051 ATAGTGTTCCTCCGAAATTAACAC 57.020 37.500 9.21 9.21 46.43 3.32
420 421 5.684550 GTGTTCCTCCGAAATTAACACTT 57.315 39.130 9.76 0.00 44.02 3.16
421 422 5.686834 GTGTTCCTCCGAAATTAACACTTC 58.313 41.667 9.76 0.00 44.02 3.01
422 423 4.758165 TGTTCCTCCGAAATTAACACTTCC 59.242 41.667 0.00 0.00 0.00 3.46
423 424 4.627284 TCCTCCGAAATTAACACTTCCA 57.373 40.909 0.00 0.00 0.00 3.53
424 425 5.174037 TCCTCCGAAATTAACACTTCCAT 57.826 39.130 0.00 0.00 0.00 3.41
425 426 5.183228 TCCTCCGAAATTAACACTTCCATC 58.817 41.667 0.00 0.00 0.00 3.51
426 427 4.941263 CCTCCGAAATTAACACTTCCATCA 59.059 41.667 0.00 0.00 0.00 3.07
427 428 5.590259 CCTCCGAAATTAACACTTCCATCAT 59.410 40.000 0.00 0.00 0.00 2.45
428 429 6.095440 CCTCCGAAATTAACACTTCCATCATT 59.905 38.462 0.00 0.00 0.00 2.57
429 430 7.083875 TCCGAAATTAACACTTCCATCATTC 57.916 36.000 0.00 0.00 0.00 2.67
430 431 6.657117 TCCGAAATTAACACTTCCATCATTCA 59.343 34.615 0.00 0.00 0.00 2.57
431 432 7.175816 TCCGAAATTAACACTTCCATCATTCAA 59.824 33.333 0.00 0.00 0.00 2.69
432 433 7.485913 CCGAAATTAACACTTCCATCATTCAAG 59.514 37.037 0.00 0.00 0.00 3.02
433 434 8.236586 CGAAATTAACACTTCCATCATTCAAGA 58.763 33.333 0.00 0.00 0.00 3.02
434 435 9.912634 GAAATTAACACTTCCATCATTCAAGAA 57.087 29.630 0.00 0.00 0.00 2.52
437 438 9.696917 ATTAACACTTCCATCATTCAAGAAAAC 57.303 29.630 0.00 0.00 0.00 2.43
438 439 6.089249 ACACTTCCATCATTCAAGAAAACC 57.911 37.500 0.00 0.00 0.00 3.27
439 440 5.598005 ACACTTCCATCATTCAAGAAAACCA 59.402 36.000 0.00 0.00 0.00 3.67
440 441 6.098124 ACACTTCCATCATTCAAGAAAACCAA 59.902 34.615 0.00 0.00 0.00 3.67
441 442 7.156673 CACTTCCATCATTCAAGAAAACCAAT 58.843 34.615 0.00 0.00 0.00 3.16
442 443 7.658575 CACTTCCATCATTCAAGAAAACCAATT 59.341 33.333 0.00 0.00 0.00 2.32
443 444 8.212995 ACTTCCATCATTCAAGAAAACCAATTT 58.787 29.630 0.00 0.00 0.00 1.82
444 445 8.977267 TTCCATCATTCAAGAAAACCAATTTT 57.023 26.923 0.00 0.00 40.83 1.82
445 446 8.380743 TCCATCATTCAAGAAAACCAATTTTG 57.619 30.769 0.00 0.00 38.17 2.44
446 447 8.209584 TCCATCATTCAAGAAAACCAATTTTGA 58.790 29.630 0.00 0.00 38.17 2.69
447 448 8.838365 CCATCATTCAAGAAAACCAATTTTGAA 58.162 29.630 2.61 2.61 38.17 2.69
448 449 9.872757 CATCATTCAAGAAAACCAATTTTGAAG 57.127 29.630 5.68 0.45 38.17 3.02
449 450 9.835389 ATCATTCAAGAAAACCAATTTTGAAGA 57.165 25.926 5.68 4.42 38.17 2.87
450 451 9.097257 TCATTCAAGAAAACCAATTTTGAAGAC 57.903 29.630 5.68 0.00 38.17 3.01
451 452 8.881743 CATTCAAGAAAACCAATTTTGAAGACA 58.118 29.630 5.68 0.00 38.17 3.41
452 453 9.617523 ATTCAAGAAAACCAATTTTGAAGACAT 57.382 25.926 5.68 0.00 38.17 3.06
453 454 8.647143 TCAAGAAAACCAATTTTGAAGACATC 57.353 30.769 0.00 0.00 38.17 3.06
454 455 8.256605 TCAAGAAAACCAATTTTGAAGACATCA 58.743 29.630 0.00 0.00 38.17 3.07
455 456 8.881743 CAAGAAAACCAATTTTGAAGACATCAA 58.118 29.630 0.00 0.00 46.22 2.57
467 468 6.549912 TGAAGACATCAAAAGTGAGACATG 57.450 37.500 0.00 0.00 37.14 3.21
468 469 6.057533 TGAAGACATCAAAAGTGAGACATGT 58.942 36.000 0.00 0.00 37.14 3.21
469 470 6.203530 TGAAGACATCAAAAGTGAGACATGTC 59.796 38.462 18.47 18.47 39.08 3.06
470 471 4.687948 AGACATCAAAAGTGAGACATGTCG 59.312 41.667 19.85 3.61 41.69 4.35
471 472 4.631131 ACATCAAAAGTGAGACATGTCGA 58.369 39.130 19.85 9.00 37.14 4.20
472 473 5.240891 ACATCAAAAGTGAGACATGTCGAT 58.759 37.500 19.85 10.84 37.14 3.59
473 474 5.121298 ACATCAAAAGTGAGACATGTCGATG 59.879 40.000 23.23 23.23 37.14 3.84
474 475 4.881920 TCAAAAGTGAGACATGTCGATGA 58.118 39.130 19.85 13.60 33.36 2.92
475 476 5.482006 TCAAAAGTGAGACATGTCGATGAT 58.518 37.500 19.85 1.93 33.36 2.45
476 477 5.934043 TCAAAAGTGAGACATGTCGATGATT 59.066 36.000 19.85 11.03 33.36 2.57
477 478 6.427853 TCAAAAGTGAGACATGTCGATGATTT 59.572 34.615 19.85 15.69 33.36 2.17
478 479 7.602265 TCAAAAGTGAGACATGTCGATGATTTA 59.398 33.333 19.85 2.41 33.36 1.40
479 480 7.531280 AAAGTGAGACATGTCGATGATTTAG 57.469 36.000 19.85 0.00 33.36 1.85
480 481 6.456795 AGTGAGACATGTCGATGATTTAGA 57.543 37.500 19.85 0.00 33.36 2.10
481 482 6.269315 AGTGAGACATGTCGATGATTTAGAC 58.731 40.000 19.85 6.05 33.36 2.59
482 483 6.036470 GTGAGACATGTCGATGATTTAGACA 58.964 40.000 19.85 0.00 46.99 3.41
505 506 8.109705 ACATATTAATGTCAGTGCTCAAAACA 57.890 30.769 0.00 0.00 42.92 2.83
506 507 8.575589 ACATATTAATGTCAGTGCTCAAAACAA 58.424 29.630 0.00 0.00 42.92 2.83
507 508 8.853345 CATATTAATGTCAGTGCTCAAAACAAC 58.147 33.333 0.00 0.00 0.00 3.32
508 509 4.989279 AATGTCAGTGCTCAAAACAACT 57.011 36.364 0.00 0.00 0.00 3.16
509 510 4.558538 ATGTCAGTGCTCAAAACAACTC 57.441 40.909 0.00 0.00 0.00 3.01
510 511 2.351418 TGTCAGTGCTCAAAACAACTCG 59.649 45.455 0.00 0.00 0.00 4.18
511 512 2.607635 GTCAGTGCTCAAAACAACTCGA 59.392 45.455 0.00 0.00 0.00 4.04
512 513 3.063452 GTCAGTGCTCAAAACAACTCGAA 59.937 43.478 0.00 0.00 0.00 3.71
513 514 3.876914 TCAGTGCTCAAAACAACTCGAAT 59.123 39.130 0.00 0.00 0.00 3.34
514 515 3.970610 CAGTGCTCAAAACAACTCGAATG 59.029 43.478 0.00 0.00 0.00 2.67
515 516 3.627577 AGTGCTCAAAACAACTCGAATGT 59.372 39.130 0.00 0.00 0.00 2.71
516 517 3.968724 GTGCTCAAAACAACTCGAATGTC 59.031 43.478 4.19 0.00 0.00 3.06
517 518 3.003275 TGCTCAAAACAACTCGAATGTCC 59.997 43.478 4.19 0.00 0.00 4.02
518 519 3.003275 GCTCAAAACAACTCGAATGTCCA 59.997 43.478 4.19 0.00 0.00 4.02
519 520 4.497340 GCTCAAAACAACTCGAATGTCCAA 60.497 41.667 4.19 0.00 0.00 3.53
520 521 5.168526 TCAAAACAACTCGAATGTCCAAG 57.831 39.130 4.19 0.00 0.00 3.61
521 522 3.626028 AAACAACTCGAATGTCCAAGC 57.374 42.857 4.19 0.00 0.00 4.01
522 523 2.550830 ACAACTCGAATGTCCAAGCT 57.449 45.000 0.00 0.00 0.00 3.74
523 524 2.417719 ACAACTCGAATGTCCAAGCTC 58.582 47.619 0.00 0.00 0.00 4.09
524 525 1.391485 CAACTCGAATGTCCAAGCTCG 59.609 52.381 0.00 0.00 0.00 5.03
525 526 0.737715 ACTCGAATGTCCAAGCTCGC 60.738 55.000 0.00 0.00 0.00 5.03
526 527 0.459237 CTCGAATGTCCAAGCTCGCT 60.459 55.000 0.00 0.00 0.00 4.93
527 528 0.815095 TCGAATGTCCAAGCTCGCTA 59.185 50.000 0.00 0.00 0.00 4.26
528 529 1.409064 TCGAATGTCCAAGCTCGCTAT 59.591 47.619 0.00 0.00 0.00 2.97
529 530 1.524355 CGAATGTCCAAGCTCGCTATG 59.476 52.381 0.00 0.00 0.00 2.23
530 531 1.869767 GAATGTCCAAGCTCGCTATGG 59.130 52.381 11.45 11.45 35.49 2.74
531 532 0.833287 ATGTCCAAGCTCGCTATGGT 59.167 50.000 15.02 0.76 35.66 3.55
532 533 1.480789 TGTCCAAGCTCGCTATGGTA 58.519 50.000 15.02 7.38 35.66 3.25
533 534 2.039418 TGTCCAAGCTCGCTATGGTAT 58.961 47.619 15.02 0.00 35.66 2.73
534 535 2.434336 TGTCCAAGCTCGCTATGGTATT 59.566 45.455 15.02 0.00 35.66 1.89
535 536 2.802816 GTCCAAGCTCGCTATGGTATTG 59.197 50.000 15.02 0.59 35.66 1.90
536 537 2.146342 CCAAGCTCGCTATGGTATTGG 58.854 52.381 10.17 0.00 0.00 3.16
537 538 2.224281 CCAAGCTCGCTATGGTATTGGA 60.224 50.000 10.17 0.00 38.35 3.53
538 539 3.557898 CCAAGCTCGCTATGGTATTGGAT 60.558 47.826 10.17 0.00 38.35 3.41
539 540 3.601443 AGCTCGCTATGGTATTGGATC 57.399 47.619 0.00 0.00 0.00 3.36
540 541 3.169099 AGCTCGCTATGGTATTGGATCT 58.831 45.455 0.00 0.00 0.00 2.75
541 542 3.194542 AGCTCGCTATGGTATTGGATCTC 59.805 47.826 0.00 0.00 0.00 2.75
542 543 3.677424 GCTCGCTATGGTATTGGATCTCC 60.677 52.174 0.00 0.00 0.00 3.71
543 544 2.832129 TCGCTATGGTATTGGATCTCCC 59.168 50.000 0.00 0.00 34.29 4.30
544 545 2.417379 CGCTATGGTATTGGATCTCCCG 60.417 54.545 0.00 0.00 37.93 5.14
545 546 2.093447 GCTATGGTATTGGATCTCCCGG 60.093 54.545 0.00 0.00 37.93 5.73
546 547 2.415983 ATGGTATTGGATCTCCCGGA 57.584 50.000 0.73 0.00 37.93 5.14
547 548 2.415983 TGGTATTGGATCTCCCGGAT 57.584 50.000 0.73 0.00 37.93 4.18
555 556 2.969628 GATCTCCCGGATCGCATTAT 57.030 50.000 0.73 0.00 40.99 1.28
556 557 3.252974 GATCTCCCGGATCGCATTATT 57.747 47.619 0.73 0.00 40.99 1.40
557 558 3.600388 GATCTCCCGGATCGCATTATTT 58.400 45.455 0.73 0.00 40.99 1.40
558 559 3.485463 TCTCCCGGATCGCATTATTTT 57.515 42.857 0.73 0.00 0.00 1.82
559 560 3.399330 TCTCCCGGATCGCATTATTTTC 58.601 45.455 0.73 0.00 0.00 2.29
560 561 3.138304 CTCCCGGATCGCATTATTTTCA 58.862 45.455 0.73 0.00 0.00 2.69
561 562 3.546724 TCCCGGATCGCATTATTTTCAA 58.453 40.909 0.73 0.00 0.00 2.69
562 563 4.141287 TCCCGGATCGCATTATTTTCAAT 58.859 39.130 0.73 0.00 0.00 2.57
563 564 4.582656 TCCCGGATCGCATTATTTTCAATT 59.417 37.500 0.73 0.00 0.00 2.32
564 565 5.765677 TCCCGGATCGCATTATTTTCAATTA 59.234 36.000 0.73 0.00 0.00 1.40
565 566 6.263392 TCCCGGATCGCATTATTTTCAATTAA 59.737 34.615 0.73 0.00 0.00 1.40
566 567 7.040062 TCCCGGATCGCATTATTTTCAATTAAT 60.040 33.333 0.73 0.00 0.00 1.40
567 568 7.598493 CCCGGATCGCATTATTTTCAATTAATT 59.402 33.333 0.73 0.00 0.00 1.40
568 569 8.977505 CCGGATCGCATTATTTTCAATTAATTT 58.022 29.630 0.00 0.00 0.00 1.82
569 570 9.993881 CGGATCGCATTATTTTCAATTAATTTC 57.006 29.630 0.00 0.00 0.00 2.17
592 593 9.865152 TTTCATTATATGAGGAAACATGATGGA 57.135 29.630 0.00 0.00 40.94 3.41
593 594 9.865152 TTCATTATATGAGGAAACATGATGGAA 57.135 29.630 0.00 0.00 40.94 3.53
594 595 9.288576 TCATTATATGAGGAAACATGATGGAAC 57.711 33.333 0.00 0.00 33.59 3.62
613 614 7.764141 TGGAACATGATTTTTGAGAAGATCA 57.236 32.000 0.00 0.00 39.72 2.92
614 615 8.180706 TGGAACATGATTTTTGAGAAGATCAA 57.819 30.769 0.00 0.00 46.31 2.57
622 623 2.231716 TGAGAAGATCAAGTCCCGGA 57.768 50.000 0.73 0.00 34.02 5.14
623 624 1.825474 TGAGAAGATCAAGTCCCGGAC 59.175 52.381 9.81 9.81 34.02 4.79
624 625 1.825474 GAGAAGATCAAGTCCCGGACA 59.175 52.381 19.95 0.00 34.60 4.02
625 626 2.233922 GAGAAGATCAAGTCCCGGACAA 59.766 50.000 19.95 5.14 34.60 3.18
626 627 2.840651 AGAAGATCAAGTCCCGGACAAT 59.159 45.455 19.95 9.71 34.60 2.71
627 628 2.698855 AGATCAAGTCCCGGACAATG 57.301 50.000 19.95 16.75 34.60 2.82
628 629 1.909302 AGATCAAGTCCCGGACAATGT 59.091 47.619 19.95 5.98 34.60 2.71
629 630 2.009774 GATCAAGTCCCGGACAATGTG 58.990 52.381 19.95 11.35 34.60 3.21
630 631 0.036164 TCAAGTCCCGGACAATGTGG 59.964 55.000 19.95 0.00 34.60 4.17
631 632 1.303317 AAGTCCCGGACAATGTGGC 60.303 57.895 19.95 0.00 34.60 5.01
632 633 2.033448 GTCCCGGACAATGTGGCA 59.967 61.111 13.05 0.00 32.09 4.92
633 634 1.602323 GTCCCGGACAATGTGGCAA 60.602 57.895 13.05 0.00 32.09 4.52
634 635 1.303236 TCCCGGACAATGTGGCAAG 60.303 57.895 0.73 0.00 0.00 4.01
635 636 1.603455 CCCGGACAATGTGGCAAGT 60.603 57.895 0.73 0.00 0.00 3.16
636 637 1.580942 CCGGACAATGTGGCAAGTG 59.419 57.895 0.00 0.00 0.00 3.16
637 638 0.888736 CCGGACAATGTGGCAAGTGA 60.889 55.000 0.00 0.00 0.00 3.41
638 639 1.167851 CGGACAATGTGGCAAGTGAT 58.832 50.000 0.00 0.00 0.00 3.06
639 640 2.355197 CGGACAATGTGGCAAGTGATA 58.645 47.619 0.00 0.00 0.00 2.15
640 641 2.352651 CGGACAATGTGGCAAGTGATAG 59.647 50.000 0.00 0.00 0.00 2.08
641 642 3.609853 GGACAATGTGGCAAGTGATAGA 58.390 45.455 0.00 0.00 0.00 1.98
642 643 4.009675 GGACAATGTGGCAAGTGATAGAA 58.990 43.478 0.00 0.00 0.00 2.10
643 644 4.641989 GGACAATGTGGCAAGTGATAGAAT 59.358 41.667 0.00 0.00 0.00 2.40
644 645 5.126061 GGACAATGTGGCAAGTGATAGAATT 59.874 40.000 0.00 0.00 0.00 2.17
645 646 6.318648 GGACAATGTGGCAAGTGATAGAATTA 59.681 38.462 0.00 0.00 0.00 1.40
646 647 7.013655 GGACAATGTGGCAAGTGATAGAATTAT 59.986 37.037 0.00 0.00 0.00 1.28
647 648 8.978874 ACAATGTGGCAAGTGATAGAATTATA 57.021 30.769 0.00 0.00 0.00 0.98
648 649 9.578576 ACAATGTGGCAAGTGATAGAATTATAT 57.421 29.630 0.00 0.00 0.00 0.86
649 650 9.836076 CAATGTGGCAAGTGATAGAATTATATG 57.164 33.333 0.00 0.00 0.00 1.78
650 651 9.578576 AATGTGGCAAGTGATAGAATTATATGT 57.421 29.630 0.00 0.00 0.00 2.29
651 652 8.607441 TGTGGCAAGTGATAGAATTATATGTC 57.393 34.615 0.00 0.00 0.00 3.06
652 653 8.210265 TGTGGCAAGTGATAGAATTATATGTCA 58.790 33.333 0.00 0.00 0.00 3.58
653 654 9.056005 GTGGCAAGTGATAGAATTATATGTCAA 57.944 33.333 0.00 0.00 0.00 3.18
654 655 9.797642 TGGCAAGTGATAGAATTATATGTCAAT 57.202 29.630 0.00 0.00 0.00 2.57
673 674 8.408043 TGTCAATTTCAAATTGATCCTGTAGT 57.592 30.769 24.91 0.00 39.80 2.73
674 675 8.859090 TGTCAATTTCAAATTGATCCTGTAGTT 58.141 29.630 24.91 0.00 39.80 2.24
675 676 9.346725 GTCAATTTCAAATTGATCCTGTAGTTC 57.653 33.333 24.91 7.67 39.80 3.01
676 677 9.076781 TCAATTTCAAATTGATCCTGTAGTTCA 57.923 29.630 19.70 0.00 33.55 3.18
677 678 9.350357 CAATTTCAAATTGATCCTGTAGTTCAG 57.650 33.333 16.69 0.00 43.27 3.02
678 679 8.868522 ATTTCAAATTGATCCTGTAGTTCAGA 57.131 30.769 0.00 0.00 46.27 3.27
679 680 8.690203 TTTCAAATTGATCCTGTAGTTCAGAA 57.310 30.769 0.00 0.00 46.27 3.02
680 681 8.690203 TTCAAATTGATCCTGTAGTTCAGAAA 57.310 30.769 0.00 0.00 46.27 2.52
681 682 8.099364 TCAAATTGATCCTGTAGTTCAGAAAC 57.901 34.615 0.00 0.00 46.27 2.78
683 684 9.219603 CAAATTGATCCTGTAGTTCAGAAACTA 57.780 33.333 0.00 0.00 43.98 2.24
684 685 9.965902 AAATTGATCCTGTAGTTCAGAAACTAT 57.034 29.630 0.00 0.00 46.76 2.12
685 686 9.606631 AATTGATCCTGTAGTTCAGAAACTATC 57.393 33.333 0.00 0.00 46.76 2.08
969 970 3.753806 AAAACAACCGACCGGCCGA 62.754 57.895 30.73 0.00 39.32 5.54
1418 1440 5.579753 AGGAGATTCATTGGATGTGCTAT 57.420 39.130 0.00 0.00 0.00 2.97
1529 1552 9.959749 TGTTTCAGTATCTGTTTATTGAAAACC 57.040 29.630 10.23 4.16 38.62 3.27
2136 3159 2.978278 AGGAAGGCCATGAAGGAGATAG 59.022 50.000 5.01 0.00 41.22 2.08
2144 3167 4.041444 GCCATGAAGGAGATAGAAGTGGAT 59.959 45.833 0.00 0.00 41.22 3.41
2443 3488 2.828549 GGGGTGCTGTTATGGCCG 60.829 66.667 0.00 0.00 0.00 6.13
2498 3543 7.613801 TCTTTAATGCCCTGATGCTAAGTTAAA 59.386 33.333 0.00 0.00 0.00 1.52
2971 4042 0.304098 CGATCTGTAGGTCGTCGTCC 59.696 60.000 6.39 0.00 33.42 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.179161 CTCTCCGTAACAGCGACCTG 60.179 60.000 0.00 0.00 44.80 4.00
8 9 0.322277 TCTCTCCGTAACAGCGACCT 60.322 55.000 0.00 0.00 0.00 3.85
9 10 0.099082 CTCTCTCCGTAACAGCGACC 59.901 60.000 0.00 0.00 0.00 4.79
10 11 1.062880 CTCTCTCTCCGTAACAGCGAC 59.937 57.143 0.00 0.00 0.00 5.19
11 12 1.066358 TCTCTCTCTCCGTAACAGCGA 60.066 52.381 0.00 0.00 0.00 4.93
12 13 1.329292 CTCTCTCTCTCCGTAACAGCG 59.671 57.143 0.00 0.00 0.00 5.18
13 14 2.612212 CTCTCTCTCTCTCCGTAACAGC 59.388 54.545 0.00 0.00 0.00 4.40
14 15 2.612212 GCTCTCTCTCTCTCCGTAACAG 59.388 54.545 0.00 0.00 0.00 3.16
15 16 2.237643 AGCTCTCTCTCTCTCCGTAACA 59.762 50.000 0.00 0.00 0.00 2.41
16 17 2.612212 CAGCTCTCTCTCTCTCCGTAAC 59.388 54.545 0.00 0.00 0.00 2.50
17 18 2.420827 CCAGCTCTCTCTCTCTCCGTAA 60.421 54.545 0.00 0.00 0.00 3.18
18 19 1.140052 CCAGCTCTCTCTCTCTCCGTA 59.860 57.143 0.00 0.00 0.00 4.02
19 20 0.107214 CCAGCTCTCTCTCTCTCCGT 60.107 60.000 0.00 0.00 0.00 4.69
20 21 1.447317 GCCAGCTCTCTCTCTCTCCG 61.447 65.000 0.00 0.00 0.00 4.63
21 22 1.447317 CGCCAGCTCTCTCTCTCTCC 61.447 65.000 0.00 0.00 0.00 3.71
22 23 0.463654 TCGCCAGCTCTCTCTCTCTC 60.464 60.000 0.00 0.00 0.00 3.20
23 24 0.183492 ATCGCCAGCTCTCTCTCTCT 59.817 55.000 0.00 0.00 0.00 3.10
24 25 0.311790 CATCGCCAGCTCTCTCTCTC 59.688 60.000 0.00 0.00 0.00 3.20
25 26 1.108727 CCATCGCCAGCTCTCTCTCT 61.109 60.000 0.00 0.00 0.00 3.10
26 27 1.363443 CCATCGCCAGCTCTCTCTC 59.637 63.158 0.00 0.00 0.00 3.20
27 28 2.132996 CCCATCGCCAGCTCTCTCT 61.133 63.158 0.00 0.00 0.00 3.10
28 29 1.470996 ATCCCATCGCCAGCTCTCTC 61.471 60.000 0.00 0.00 0.00 3.20
29 30 1.459158 ATCCCATCGCCAGCTCTCT 60.459 57.895 0.00 0.00 0.00 3.10
30 31 1.005156 GATCCCATCGCCAGCTCTC 60.005 63.158 0.00 0.00 0.00 3.20
31 32 1.459158 AGATCCCATCGCCAGCTCT 60.459 57.895 0.00 0.00 0.00 4.09
32 33 1.301558 CAGATCCCATCGCCAGCTC 60.302 63.158 0.00 0.00 0.00 4.09
33 34 2.815945 CCAGATCCCATCGCCAGCT 61.816 63.158 0.00 0.00 0.00 4.24
34 35 2.281345 CCAGATCCCATCGCCAGC 60.281 66.667 0.00 0.00 0.00 4.85
35 36 1.117749 TCTCCAGATCCCATCGCCAG 61.118 60.000 0.00 0.00 0.00 4.85
36 37 1.075301 TCTCCAGATCCCATCGCCA 60.075 57.895 0.00 0.00 0.00 5.69
37 38 0.829602 TCTCTCCAGATCCCATCGCC 60.830 60.000 0.00 0.00 0.00 5.54
38 39 1.204467 GATCTCTCCAGATCCCATCGC 59.796 57.143 1.10 0.00 46.83 4.58
46 47 1.039068 CGCACCAGATCTCTCCAGAT 58.961 55.000 0.00 0.00 42.59 2.90
47 48 1.039785 CCGCACCAGATCTCTCCAGA 61.040 60.000 0.00 0.00 0.00 3.86
48 49 1.440893 CCGCACCAGATCTCTCCAG 59.559 63.158 0.00 0.00 0.00 3.86
49 50 2.060383 CCCGCACCAGATCTCTCCA 61.060 63.158 0.00 0.00 0.00 3.86
50 51 2.022240 GACCCGCACCAGATCTCTCC 62.022 65.000 0.00 0.00 0.00 3.71
51 52 1.439644 GACCCGCACCAGATCTCTC 59.560 63.158 0.00 0.00 0.00 3.20
52 53 2.418910 CGACCCGCACCAGATCTCT 61.419 63.158 0.00 0.00 0.00 3.10
53 54 2.105128 CGACCCGCACCAGATCTC 59.895 66.667 0.00 0.00 0.00 2.75
54 55 3.461773 CCGACCCGCACCAGATCT 61.462 66.667 0.00 0.00 0.00 2.75
55 56 4.530857 CCCGACCCGCACCAGATC 62.531 72.222 0.00 0.00 0.00 2.75
58 59 4.636435 AAACCCGACCCGCACCAG 62.636 66.667 0.00 0.00 0.00 4.00
59 60 4.629523 GAAACCCGACCCGCACCA 62.630 66.667 0.00 0.00 0.00 4.17
60 61 4.629523 TGAAACCCGACCCGCACC 62.630 66.667 0.00 0.00 0.00 5.01
61 62 3.047877 CTGAAACCCGACCCGCAC 61.048 66.667 0.00 0.00 0.00 5.34
62 63 3.524648 GACTGAAACCCGACCCGCA 62.525 63.158 0.00 0.00 0.00 5.69
63 64 2.741211 GACTGAAACCCGACCCGC 60.741 66.667 0.00 0.00 0.00 6.13
64 65 2.424705 TTCGACTGAAACCCGACCCG 62.425 60.000 0.00 0.00 31.60 5.28
65 66 0.947660 GTTCGACTGAAACCCGACCC 60.948 60.000 0.00 0.00 35.46 4.46
66 67 1.280206 CGTTCGACTGAAACCCGACC 61.280 60.000 0.00 0.00 35.46 4.79
67 68 1.883725 GCGTTCGACTGAAACCCGAC 61.884 60.000 0.00 0.00 35.46 4.79
68 69 1.662446 GCGTTCGACTGAAACCCGA 60.662 57.895 0.00 0.00 35.46 5.14
69 70 0.387622 TAGCGTTCGACTGAAACCCG 60.388 55.000 0.00 0.00 35.46 5.28
70 71 1.066136 GTAGCGTTCGACTGAAACCC 58.934 55.000 0.00 0.00 35.46 4.11
71 72 2.061740 AGTAGCGTTCGACTGAAACC 57.938 50.000 0.00 0.00 35.46 3.27
72 73 4.448363 AAAAGTAGCGTTCGACTGAAAC 57.552 40.909 0.00 0.00 35.46 2.78
73 74 4.807304 AGAAAAAGTAGCGTTCGACTGAAA 59.193 37.500 0.00 0.00 35.46 2.69
74 75 4.365723 AGAAAAAGTAGCGTTCGACTGAA 58.634 39.130 0.00 0.00 0.00 3.02
75 76 3.973657 AGAAAAAGTAGCGTTCGACTGA 58.026 40.909 0.00 0.00 0.00 3.41
76 77 4.710528 AAGAAAAAGTAGCGTTCGACTG 57.289 40.909 0.00 0.00 0.00 3.51
77 78 4.385146 GCTAAGAAAAAGTAGCGTTCGACT 59.615 41.667 0.00 0.00 33.90 4.18
78 79 4.149396 TGCTAAGAAAAAGTAGCGTTCGAC 59.851 41.667 0.00 0.00 44.70 4.20
79 80 4.149396 GTGCTAAGAAAAAGTAGCGTTCGA 59.851 41.667 0.00 0.00 44.70 3.71
80 81 4.383679 GTGCTAAGAAAAAGTAGCGTTCG 58.616 43.478 0.00 0.00 44.70 3.95
81 82 4.665897 CGGTGCTAAGAAAAAGTAGCGTTC 60.666 45.833 4.92 0.00 44.70 3.95
82 83 3.185797 CGGTGCTAAGAAAAAGTAGCGTT 59.814 43.478 4.92 0.00 44.70 4.84
83 84 2.735134 CGGTGCTAAGAAAAAGTAGCGT 59.265 45.455 4.92 0.00 44.70 5.07
84 85 3.369835 CGGTGCTAAGAAAAAGTAGCG 57.630 47.619 0.00 0.00 44.70 4.26
85 86 4.259850 CGATCGGTGCTAAGAAAAAGTAGC 60.260 45.833 7.38 0.00 42.56 3.58
86 87 5.100259 TCGATCGGTGCTAAGAAAAAGTAG 58.900 41.667 16.41 0.00 0.00 2.57
87 88 5.063180 TCGATCGGTGCTAAGAAAAAGTA 57.937 39.130 16.41 0.00 0.00 2.24
88 89 3.921677 TCGATCGGTGCTAAGAAAAAGT 58.078 40.909 16.41 0.00 0.00 2.66
89 90 4.151689 TGTTCGATCGGTGCTAAGAAAAAG 59.848 41.667 16.41 0.00 0.00 2.27
90 91 4.059511 TGTTCGATCGGTGCTAAGAAAAA 58.940 39.130 16.41 0.00 0.00 1.94
91 92 3.430895 GTGTTCGATCGGTGCTAAGAAAA 59.569 43.478 16.41 0.00 0.00 2.29
92 93 2.991190 GTGTTCGATCGGTGCTAAGAAA 59.009 45.455 16.41 0.00 0.00 2.52
93 94 2.230508 AGTGTTCGATCGGTGCTAAGAA 59.769 45.455 16.41 0.00 0.00 2.52
94 95 1.816835 AGTGTTCGATCGGTGCTAAGA 59.183 47.619 16.41 0.00 0.00 2.10
95 96 2.279582 AGTGTTCGATCGGTGCTAAG 57.720 50.000 16.41 0.00 0.00 2.18
96 97 2.751259 AGTAGTGTTCGATCGGTGCTAA 59.249 45.455 16.41 0.00 0.00 3.09
97 98 2.096980 CAGTAGTGTTCGATCGGTGCTA 59.903 50.000 16.41 9.90 0.00 3.49
98 99 1.135373 CAGTAGTGTTCGATCGGTGCT 60.135 52.381 16.41 10.85 0.00 4.40
99 100 1.269166 CAGTAGTGTTCGATCGGTGC 58.731 55.000 16.41 6.41 0.00 5.01
100 101 1.201647 ACCAGTAGTGTTCGATCGGTG 59.798 52.381 16.41 0.66 0.00 4.94
101 102 1.201647 CACCAGTAGTGTTCGATCGGT 59.798 52.381 16.41 0.00 41.93 4.69
102 103 1.469251 CCACCAGTAGTGTTCGATCGG 60.469 57.143 16.41 0.00 45.74 4.18
103 104 1.469251 CCCACCAGTAGTGTTCGATCG 60.469 57.143 9.36 9.36 45.74 3.69
104 105 1.822990 TCCCACCAGTAGTGTTCGATC 59.177 52.381 0.00 0.00 45.74 3.69
105 106 1.933021 TCCCACCAGTAGTGTTCGAT 58.067 50.000 0.00 0.00 45.74 3.59
106 107 1.707106 TTCCCACCAGTAGTGTTCGA 58.293 50.000 0.00 0.00 45.74 3.71
107 108 2.289444 ACATTCCCACCAGTAGTGTTCG 60.289 50.000 0.00 0.00 45.74 3.95
108 109 3.074412 CACATTCCCACCAGTAGTGTTC 58.926 50.000 0.00 0.00 45.74 3.18
109 110 2.814097 GCACATTCCCACCAGTAGTGTT 60.814 50.000 0.00 0.00 45.74 3.32
110 111 1.271379 GCACATTCCCACCAGTAGTGT 60.271 52.381 0.00 0.00 45.74 3.55
111 112 1.453155 GCACATTCCCACCAGTAGTG 58.547 55.000 0.00 0.00 46.83 2.74
112 113 0.328258 GGCACATTCCCACCAGTAGT 59.672 55.000 0.00 0.00 0.00 2.73
113 114 0.744414 CGGCACATTCCCACCAGTAG 60.744 60.000 0.00 0.00 0.00 2.57
114 115 1.195442 TCGGCACATTCCCACCAGTA 61.195 55.000 0.00 0.00 0.00 2.74
115 116 2.034066 CGGCACATTCCCACCAGT 59.966 61.111 0.00 0.00 0.00 4.00
116 117 0.893270 TTTCGGCACATTCCCACCAG 60.893 55.000 0.00 0.00 0.00 4.00
117 118 0.893270 CTTTCGGCACATTCCCACCA 60.893 55.000 0.00 0.00 0.00 4.17
118 119 0.893727 ACTTTCGGCACATTCCCACC 60.894 55.000 0.00 0.00 0.00 4.61
119 120 0.958822 AACTTTCGGCACATTCCCAC 59.041 50.000 0.00 0.00 0.00 4.61
120 121 1.698506 AAACTTTCGGCACATTCCCA 58.301 45.000 0.00 0.00 0.00 4.37
121 122 2.812358 AAAACTTTCGGCACATTCCC 57.188 45.000 0.00 0.00 0.00 3.97
253 254 7.675962 ATTGATCTACTATAGACTGACGACC 57.324 40.000 6.78 0.00 37.69 4.79
281 282 9.449719 ACGTCTAGGAAGTGAATATTTCAATTT 57.550 29.630 4.66 0.00 46.58 1.82
283 284 9.099454 GAACGTCTAGGAAGTGAATATTTCAAT 57.901 33.333 0.00 0.00 42.15 2.57
284 285 8.092068 TGAACGTCTAGGAAGTGAATATTTCAA 58.908 33.333 0.00 0.00 42.15 2.69
285 286 7.608153 TGAACGTCTAGGAAGTGAATATTTCA 58.392 34.615 0.00 0.00 37.33 2.69
286 287 8.543774 CATGAACGTCTAGGAAGTGAATATTTC 58.456 37.037 0.00 0.00 0.00 2.17
287 288 8.041323 ACATGAACGTCTAGGAAGTGAATATTT 58.959 33.333 0.00 0.00 0.00 1.40
288 289 7.556844 ACATGAACGTCTAGGAAGTGAATATT 58.443 34.615 0.00 0.00 0.00 1.28
289 290 7.113658 ACATGAACGTCTAGGAAGTGAATAT 57.886 36.000 0.00 0.00 0.00 1.28
290 291 6.525578 ACATGAACGTCTAGGAAGTGAATA 57.474 37.500 0.00 0.00 0.00 1.75
291 292 5.407407 ACATGAACGTCTAGGAAGTGAAT 57.593 39.130 0.00 0.00 0.00 2.57
292 293 4.866508 ACATGAACGTCTAGGAAGTGAA 57.133 40.909 0.00 0.00 0.00 3.18
293 294 4.866508 AACATGAACGTCTAGGAAGTGA 57.133 40.909 0.00 0.00 0.00 3.41
294 295 4.750098 ACAAACATGAACGTCTAGGAAGTG 59.250 41.667 0.00 0.00 0.00 3.16
295 296 4.957296 ACAAACATGAACGTCTAGGAAGT 58.043 39.130 0.00 0.00 0.00 3.01
296 297 5.577164 CCTACAAACATGAACGTCTAGGAAG 59.423 44.000 0.00 0.00 0.00 3.46
297 298 5.011329 ACCTACAAACATGAACGTCTAGGAA 59.989 40.000 0.00 0.00 0.00 3.36
298 299 4.525487 ACCTACAAACATGAACGTCTAGGA 59.475 41.667 0.00 0.00 0.00 2.94
299 300 4.625742 CACCTACAAACATGAACGTCTAGG 59.374 45.833 0.00 2.36 0.00 3.02
300 301 5.466819 TCACCTACAAACATGAACGTCTAG 58.533 41.667 0.00 0.00 0.00 2.43
301 302 5.010314 ACTCACCTACAAACATGAACGTCTA 59.990 40.000 0.00 0.00 0.00 2.59
302 303 4.202223 ACTCACCTACAAACATGAACGTCT 60.202 41.667 0.00 0.00 0.00 4.18
303 304 4.056050 ACTCACCTACAAACATGAACGTC 58.944 43.478 0.00 0.00 0.00 4.34
304 305 4.067972 ACTCACCTACAAACATGAACGT 57.932 40.909 0.00 0.00 0.00 3.99
305 306 7.758076 TCTTATACTCACCTACAAACATGAACG 59.242 37.037 0.00 0.00 0.00 3.95
306 307 8.997621 TCTTATACTCACCTACAAACATGAAC 57.002 34.615 0.00 0.00 0.00 3.18
307 308 9.431887 GTTCTTATACTCACCTACAAACATGAA 57.568 33.333 0.00 0.00 0.00 2.57
308 309 8.590204 TGTTCTTATACTCACCTACAAACATGA 58.410 33.333 0.00 0.00 0.00 3.07
309 310 8.771920 TGTTCTTATACTCACCTACAAACATG 57.228 34.615 0.00 0.00 0.00 3.21
310 311 9.383519 CATGTTCTTATACTCACCTACAAACAT 57.616 33.333 0.00 0.00 34.83 2.71
311 312 7.333423 GCATGTTCTTATACTCACCTACAAACA 59.667 37.037 0.00 0.00 0.00 2.83
312 313 7.549488 AGCATGTTCTTATACTCACCTACAAAC 59.451 37.037 0.00 0.00 0.00 2.93
313 314 7.620880 AGCATGTTCTTATACTCACCTACAAA 58.379 34.615 0.00 0.00 0.00 2.83
314 315 7.182817 AGCATGTTCTTATACTCACCTACAA 57.817 36.000 0.00 0.00 0.00 2.41
315 316 6.791867 AGCATGTTCTTATACTCACCTACA 57.208 37.500 0.00 0.00 0.00 2.74
316 317 9.413048 GATTAGCATGTTCTTATACTCACCTAC 57.587 37.037 0.00 0.00 0.00 3.18
317 318 9.143155 TGATTAGCATGTTCTTATACTCACCTA 57.857 33.333 0.00 0.00 0.00 3.08
318 319 8.023021 TGATTAGCATGTTCTTATACTCACCT 57.977 34.615 0.00 0.00 0.00 4.00
319 320 8.839310 ATGATTAGCATGTTCTTATACTCACC 57.161 34.615 0.00 0.00 35.42 4.02
323 324 9.499479 CCAGAATGATTAGCATGTTCTTATACT 57.501 33.333 0.00 0.00 39.69 2.12
324 325 9.277783 ACCAGAATGATTAGCATGTTCTTATAC 57.722 33.333 0.00 0.00 39.69 1.47
325 326 9.851686 AACCAGAATGATTAGCATGTTCTTATA 57.148 29.630 0.00 0.00 39.69 0.98
326 327 8.757982 AACCAGAATGATTAGCATGTTCTTAT 57.242 30.769 0.00 0.00 39.69 1.73
327 328 8.579850 AAACCAGAATGATTAGCATGTTCTTA 57.420 30.769 0.00 0.00 39.69 2.10
328 329 7.472334 AAACCAGAATGATTAGCATGTTCTT 57.528 32.000 0.00 0.00 39.69 2.52
329 330 7.611467 TGTAAACCAGAATGATTAGCATGTTCT 59.389 33.333 0.00 0.00 39.69 3.01
330 331 7.761409 TGTAAACCAGAATGATTAGCATGTTC 58.239 34.615 0.00 0.00 39.69 3.18
331 332 7.701539 TGTAAACCAGAATGATTAGCATGTT 57.298 32.000 0.00 0.00 39.69 2.71
332 333 7.201848 CCATGTAAACCAGAATGATTAGCATGT 60.202 37.037 0.00 0.00 39.69 3.21
333 334 7.013559 TCCATGTAAACCAGAATGATTAGCATG 59.986 37.037 0.00 0.00 39.69 4.06
334 335 7.062322 TCCATGTAAACCAGAATGATTAGCAT 58.938 34.615 0.00 0.00 39.69 3.79
335 336 6.422333 TCCATGTAAACCAGAATGATTAGCA 58.578 36.000 0.00 0.00 39.69 3.49
336 337 6.942532 TCCATGTAAACCAGAATGATTAGC 57.057 37.500 0.00 0.00 39.69 3.09
337 338 7.503566 ACCATCCATGTAAACCAGAATGATTAG 59.496 37.037 0.00 0.00 39.69 1.73
338 339 7.285172 CACCATCCATGTAAACCAGAATGATTA 59.715 37.037 0.00 0.00 39.69 1.75
339 340 6.097270 CACCATCCATGTAAACCAGAATGATT 59.903 38.462 0.00 0.00 39.69 2.57
340 341 5.595542 CACCATCCATGTAAACCAGAATGAT 59.404 40.000 0.00 0.00 39.69 2.45
341 342 4.949238 CACCATCCATGTAAACCAGAATGA 59.051 41.667 0.00 0.00 39.69 2.57
342 343 4.949238 TCACCATCCATGTAAACCAGAATG 59.051 41.667 0.00 0.00 0.00 2.67
343 344 5.191727 TCACCATCCATGTAAACCAGAAT 57.808 39.130 0.00 0.00 0.00 2.40
344 345 4.649267 TCACCATCCATGTAAACCAGAA 57.351 40.909 0.00 0.00 0.00 3.02
345 346 4.042809 ACTTCACCATCCATGTAAACCAGA 59.957 41.667 0.00 0.00 0.00 3.86
346 347 4.156556 CACTTCACCATCCATGTAAACCAG 59.843 45.833 0.00 0.00 0.00 4.00
347 348 4.078537 CACTTCACCATCCATGTAAACCA 58.921 43.478 0.00 0.00 0.00 3.67
348 349 3.119495 GCACTTCACCATCCATGTAAACC 60.119 47.826 0.00 0.00 0.00 3.27
349 350 3.505680 TGCACTTCACCATCCATGTAAAC 59.494 43.478 0.00 0.00 0.00 2.01
350 351 3.760738 TGCACTTCACCATCCATGTAAA 58.239 40.909 0.00 0.00 0.00 2.01
351 352 3.431673 TGCACTTCACCATCCATGTAA 57.568 42.857 0.00 0.00 0.00 2.41
352 353 3.081061 GTTGCACTTCACCATCCATGTA 58.919 45.455 0.00 0.00 0.00 2.29
353 354 1.888512 GTTGCACTTCACCATCCATGT 59.111 47.619 0.00 0.00 0.00 3.21
354 355 1.887854 TGTTGCACTTCACCATCCATG 59.112 47.619 0.00 0.00 0.00 3.66
355 356 2.291209 TGTTGCACTTCACCATCCAT 57.709 45.000 0.00 0.00 0.00 3.41
356 357 1.887854 CATGTTGCACTTCACCATCCA 59.112 47.619 0.00 0.00 0.00 3.41
357 358 1.203052 CCATGTTGCACTTCACCATCC 59.797 52.381 0.00 0.00 0.00 3.51
358 359 2.161855 TCCATGTTGCACTTCACCATC 58.838 47.619 0.00 0.00 0.00 3.51
359 360 2.291209 TCCATGTTGCACTTCACCAT 57.709 45.000 0.00 0.00 0.00 3.55
360 361 2.161855 GATCCATGTTGCACTTCACCA 58.838 47.619 0.00 0.00 0.00 4.17
361 362 1.474077 GGATCCATGTTGCACTTCACC 59.526 52.381 6.95 0.00 0.00 4.02
362 363 2.161855 TGGATCCATGTTGCACTTCAC 58.838 47.619 11.44 0.00 0.00 3.18
363 364 2.583024 TGGATCCATGTTGCACTTCA 57.417 45.000 11.44 0.00 0.00 3.02
364 365 3.431922 CATGGATCCATGTTGCACTTC 57.568 47.619 36.88 0.00 46.20 3.01
374 375 3.041561 TCCACACCCATGGATCCAT 57.958 52.632 22.15 22.15 44.14 3.41
375 376 4.597796 TCCACACCCATGGATCCA 57.402 55.556 18.88 18.88 44.14 3.41
379 380 3.038280 CACTATACTCCACACCCATGGA 58.962 50.000 15.22 0.00 46.92 3.41
380 381 2.771943 ACACTATACTCCACACCCATGG 59.228 50.000 4.14 4.14 41.57 3.66
381 382 4.442706 GAACACTATACTCCACACCCATG 58.557 47.826 0.00 0.00 0.00 3.66
382 383 3.454812 GGAACACTATACTCCACACCCAT 59.545 47.826 0.00 0.00 0.00 4.00
383 384 2.835764 GGAACACTATACTCCACACCCA 59.164 50.000 0.00 0.00 0.00 4.51
384 385 3.105283 AGGAACACTATACTCCACACCC 58.895 50.000 0.00 0.00 0.00 4.61
385 386 3.132467 GGAGGAACACTATACTCCACACC 59.868 52.174 4.78 0.00 46.81 4.16
386 387 4.388378 GGAGGAACACTATACTCCACAC 57.612 50.000 4.78 0.00 46.81 3.82
390 391 4.996788 TTTCGGAGGAACACTATACTCC 57.003 45.455 0.00 0.00 44.71 3.85
391 392 7.977853 TGTTAATTTCGGAGGAACACTATACTC 59.022 37.037 0.00 0.00 0.00 2.59
392 393 7.763071 GTGTTAATTTCGGAGGAACACTATACT 59.237 37.037 9.76 0.00 44.08 2.12
393 394 7.903062 GTGTTAATTTCGGAGGAACACTATAC 58.097 38.462 9.76 0.00 44.08 1.47
395 396 6.980051 GTGTTAATTTCGGAGGAACACTAT 57.020 37.500 9.76 0.00 44.08 2.12
398 399 5.334646 GGAAGTGTTAATTTCGGAGGAACAC 60.335 44.000 9.21 9.21 46.52 3.32
399 400 4.758165 GGAAGTGTTAATTTCGGAGGAACA 59.242 41.667 0.00 0.00 0.00 3.18
400 401 4.758165 TGGAAGTGTTAATTTCGGAGGAAC 59.242 41.667 0.00 0.00 0.00 3.62
401 402 4.975631 TGGAAGTGTTAATTTCGGAGGAA 58.024 39.130 0.00 0.00 0.00 3.36
402 403 4.627284 TGGAAGTGTTAATTTCGGAGGA 57.373 40.909 0.00 0.00 0.00 3.71
403 404 4.941263 TGATGGAAGTGTTAATTTCGGAGG 59.059 41.667 0.00 0.00 0.00 4.30
404 405 6.683974 ATGATGGAAGTGTTAATTTCGGAG 57.316 37.500 0.00 0.00 0.00 4.63
405 406 6.657117 TGAATGATGGAAGTGTTAATTTCGGA 59.343 34.615 0.00 0.00 0.00 4.55
406 407 6.851609 TGAATGATGGAAGTGTTAATTTCGG 58.148 36.000 0.00 0.00 0.00 4.30
407 408 8.236586 TCTTGAATGATGGAAGTGTTAATTTCG 58.763 33.333 0.00 0.00 0.00 3.46
408 409 9.912634 TTCTTGAATGATGGAAGTGTTAATTTC 57.087 29.630 0.00 0.00 0.00 2.17
411 412 9.696917 GTTTTCTTGAATGATGGAAGTGTTAAT 57.303 29.630 0.00 0.00 0.00 1.40
412 413 8.141268 GGTTTTCTTGAATGATGGAAGTGTTAA 58.859 33.333 0.00 0.00 0.00 2.01
413 414 7.286546 TGGTTTTCTTGAATGATGGAAGTGTTA 59.713 33.333 0.00 0.00 0.00 2.41
414 415 6.098124 TGGTTTTCTTGAATGATGGAAGTGTT 59.902 34.615 0.00 0.00 0.00 3.32
415 416 5.598005 TGGTTTTCTTGAATGATGGAAGTGT 59.402 36.000 0.00 0.00 0.00 3.55
416 417 6.088016 TGGTTTTCTTGAATGATGGAAGTG 57.912 37.500 0.00 0.00 0.00 3.16
417 418 6.729690 TTGGTTTTCTTGAATGATGGAAGT 57.270 33.333 0.00 0.00 0.00 3.01
418 419 8.611654 AAATTGGTTTTCTTGAATGATGGAAG 57.388 30.769 0.00 0.00 0.00 3.46
419 420 8.838365 CAAAATTGGTTTTCTTGAATGATGGAA 58.162 29.630 0.00 0.00 35.41 3.53
420 421 8.209584 TCAAAATTGGTTTTCTTGAATGATGGA 58.790 29.630 0.00 0.00 35.41 3.41
421 422 8.380743 TCAAAATTGGTTTTCTTGAATGATGG 57.619 30.769 0.00 0.00 35.41 3.51
422 423 9.872757 CTTCAAAATTGGTTTTCTTGAATGATG 57.127 29.630 0.94 0.00 35.41 3.07
423 424 9.835389 TCTTCAAAATTGGTTTTCTTGAATGAT 57.165 25.926 0.94 0.00 35.41 2.45
424 425 9.097257 GTCTTCAAAATTGGTTTTCTTGAATGA 57.903 29.630 0.94 0.02 35.41 2.57
425 426 8.881743 TGTCTTCAAAATTGGTTTTCTTGAATG 58.118 29.630 0.94 0.00 35.41 2.67
426 427 9.617523 ATGTCTTCAAAATTGGTTTTCTTGAAT 57.382 25.926 0.94 0.00 35.41 2.57
427 428 9.097257 GATGTCTTCAAAATTGGTTTTCTTGAA 57.903 29.630 0.00 0.00 35.41 2.69
428 429 8.256605 TGATGTCTTCAAAATTGGTTTTCTTGA 58.743 29.630 0.00 0.00 35.41 3.02
429 430 8.422973 TGATGTCTTCAAAATTGGTTTTCTTG 57.577 30.769 0.00 0.00 35.41 3.02
443 444 6.543465 ACATGTCTCACTTTTGATGTCTTCAA 59.457 34.615 0.00 0.00 42.62 2.69
444 445 6.057533 ACATGTCTCACTTTTGATGTCTTCA 58.942 36.000 0.00 0.00 0.00 3.02
445 446 6.551385 ACATGTCTCACTTTTGATGTCTTC 57.449 37.500 0.00 0.00 0.00 2.87
446 447 5.178252 CGACATGTCTCACTTTTGATGTCTT 59.822 40.000 22.95 0.00 36.50 3.01
447 448 4.687948 CGACATGTCTCACTTTTGATGTCT 59.312 41.667 22.95 0.00 36.50 3.41
448 449 4.686091 TCGACATGTCTCACTTTTGATGTC 59.314 41.667 22.95 0.00 35.79 3.06
449 450 4.631131 TCGACATGTCTCACTTTTGATGT 58.369 39.130 22.95 0.00 0.00 3.06
450 451 5.349543 TCATCGACATGTCTCACTTTTGATG 59.650 40.000 22.95 21.67 0.00 3.07
451 452 5.482006 TCATCGACATGTCTCACTTTTGAT 58.518 37.500 22.95 12.47 0.00 2.57
452 453 4.881920 TCATCGACATGTCTCACTTTTGA 58.118 39.130 22.95 10.76 0.00 2.69
453 454 5.791367 ATCATCGACATGTCTCACTTTTG 57.209 39.130 22.95 5.60 0.00 2.44
454 455 6.808008 AAATCATCGACATGTCTCACTTTT 57.192 33.333 22.95 13.74 0.00 2.27
455 456 7.276658 GTCTAAATCATCGACATGTCTCACTTT 59.723 37.037 22.95 16.36 0.00 2.66
456 457 6.754209 GTCTAAATCATCGACATGTCTCACTT 59.246 38.462 22.95 11.00 0.00 3.16
457 458 6.127619 TGTCTAAATCATCGACATGTCTCACT 60.128 38.462 22.95 2.71 33.15 3.41
458 459 6.036470 TGTCTAAATCATCGACATGTCTCAC 58.964 40.000 22.95 0.00 33.15 3.51
459 460 6.207691 TGTCTAAATCATCGACATGTCTCA 57.792 37.500 22.95 10.29 33.15 3.27
460 461 8.978564 ATATGTCTAAATCATCGACATGTCTC 57.021 34.615 22.95 0.00 45.17 3.36
481 482 8.853345 GTTGTTTTGAGCACTGACATTAATATG 58.147 33.333 0.00 0.00 37.79 1.78
482 483 8.796475 AGTTGTTTTGAGCACTGACATTAATAT 58.204 29.630 0.00 0.00 0.00 1.28
483 484 8.165239 AGTTGTTTTGAGCACTGACATTAATA 57.835 30.769 0.00 0.00 0.00 0.98
484 485 7.042797 AGTTGTTTTGAGCACTGACATTAAT 57.957 32.000 0.00 0.00 0.00 1.40
485 486 6.449635 AGTTGTTTTGAGCACTGACATTAA 57.550 33.333 0.00 0.00 0.00 1.40
486 487 5.277297 CGAGTTGTTTTGAGCACTGACATTA 60.277 40.000 0.00 0.00 0.00 1.90
487 488 4.496341 CGAGTTGTTTTGAGCACTGACATT 60.496 41.667 0.00 0.00 0.00 2.71
488 489 3.002656 CGAGTTGTTTTGAGCACTGACAT 59.997 43.478 0.00 0.00 0.00 3.06
489 490 2.351418 CGAGTTGTTTTGAGCACTGACA 59.649 45.455 0.00 0.00 0.00 3.58
490 491 2.607635 TCGAGTTGTTTTGAGCACTGAC 59.392 45.455 0.00 0.00 0.00 3.51
491 492 2.899976 TCGAGTTGTTTTGAGCACTGA 58.100 42.857 0.00 0.00 0.00 3.41
492 493 3.673746 TTCGAGTTGTTTTGAGCACTG 57.326 42.857 0.00 0.00 0.00 3.66
493 494 3.627577 ACATTCGAGTTGTTTTGAGCACT 59.372 39.130 0.00 0.00 0.00 4.40
494 495 3.952535 ACATTCGAGTTGTTTTGAGCAC 58.047 40.909 0.00 0.00 0.00 4.40
495 496 3.003275 GGACATTCGAGTTGTTTTGAGCA 59.997 43.478 4.79 0.00 0.00 4.26
496 497 3.003275 TGGACATTCGAGTTGTTTTGAGC 59.997 43.478 4.79 0.00 0.00 4.26
497 498 4.811555 TGGACATTCGAGTTGTTTTGAG 57.188 40.909 4.79 0.00 0.00 3.02
498 499 4.497340 GCTTGGACATTCGAGTTGTTTTGA 60.497 41.667 4.79 0.00 0.00 2.69
499 500 3.730715 GCTTGGACATTCGAGTTGTTTTG 59.269 43.478 4.79 0.00 0.00 2.44
500 501 3.632145 AGCTTGGACATTCGAGTTGTTTT 59.368 39.130 4.79 0.00 0.00 2.43
501 502 3.214328 AGCTTGGACATTCGAGTTGTTT 58.786 40.909 4.79 0.00 0.00 2.83
502 503 2.808543 GAGCTTGGACATTCGAGTTGTT 59.191 45.455 4.79 0.00 0.00 2.83
503 504 2.417719 GAGCTTGGACATTCGAGTTGT 58.582 47.619 3.03 3.03 0.00 3.32
504 505 1.391485 CGAGCTTGGACATTCGAGTTG 59.609 52.381 0.00 0.00 35.19 3.16
505 506 1.714794 CGAGCTTGGACATTCGAGTT 58.285 50.000 0.00 0.00 35.19 3.01
506 507 0.737715 GCGAGCTTGGACATTCGAGT 60.738 55.000 2.37 0.00 35.19 4.18
507 508 0.459237 AGCGAGCTTGGACATTCGAG 60.459 55.000 2.37 0.00 35.19 4.04
508 509 0.815095 TAGCGAGCTTGGACATTCGA 59.185 50.000 1.86 0.00 35.19 3.71
509 510 1.524355 CATAGCGAGCTTGGACATTCG 59.476 52.381 1.86 0.00 36.23 3.34
510 511 1.869767 CCATAGCGAGCTTGGACATTC 59.130 52.381 16.06 0.00 31.94 2.67
511 512 1.210478 ACCATAGCGAGCTTGGACATT 59.790 47.619 23.19 7.08 34.52 2.71
512 513 0.833287 ACCATAGCGAGCTTGGACAT 59.167 50.000 23.19 3.19 34.52 3.06
513 514 1.480789 TACCATAGCGAGCTTGGACA 58.519 50.000 23.19 13.03 34.52 4.02
514 515 2.802816 CAATACCATAGCGAGCTTGGAC 59.197 50.000 23.19 0.00 34.52 4.02
515 516 2.224281 CCAATACCATAGCGAGCTTGGA 60.224 50.000 23.19 12.87 34.88 3.53
516 517 2.146342 CCAATACCATAGCGAGCTTGG 58.854 52.381 18.12 18.12 36.56 3.61
517 518 3.111853 TCCAATACCATAGCGAGCTTG 57.888 47.619 1.86 0.00 0.00 4.01
518 519 3.580458 AGATCCAATACCATAGCGAGCTT 59.420 43.478 1.86 0.00 0.00 3.74
519 520 3.169099 AGATCCAATACCATAGCGAGCT 58.831 45.455 2.25 2.25 0.00 4.09
520 521 3.516615 GAGATCCAATACCATAGCGAGC 58.483 50.000 0.00 0.00 0.00 5.03
521 522 3.118956 GGGAGATCCAATACCATAGCGAG 60.119 52.174 0.47 0.00 37.91 5.03
522 523 2.832129 GGGAGATCCAATACCATAGCGA 59.168 50.000 0.47 0.00 37.91 4.93
523 524 2.417379 CGGGAGATCCAATACCATAGCG 60.417 54.545 0.47 0.00 37.91 4.26
524 525 2.093447 CCGGGAGATCCAATACCATAGC 60.093 54.545 0.00 0.00 37.91 2.97
525 526 3.441101 TCCGGGAGATCCAATACCATAG 58.559 50.000 0.00 0.00 37.91 2.23
526 527 3.553375 TCCGGGAGATCCAATACCATA 57.447 47.619 0.00 0.00 37.91 2.74
527 528 2.415983 TCCGGGAGATCCAATACCAT 57.584 50.000 0.00 0.00 37.91 3.55
528 529 2.257207 GATCCGGGAGATCCAATACCA 58.743 52.381 0.00 0.00 45.00 3.25
536 537 2.969628 ATAATGCGATCCGGGAGATC 57.030 50.000 0.00 0.00 46.90 2.75
537 538 3.703001 AAATAATGCGATCCGGGAGAT 57.297 42.857 0.00 0.00 38.17 2.75
538 539 3.181459 TGAAAATAATGCGATCCGGGAGA 60.181 43.478 0.00 0.00 0.00 3.71
539 540 3.138304 TGAAAATAATGCGATCCGGGAG 58.862 45.455 0.00 0.00 0.00 4.30
540 541 3.201353 TGAAAATAATGCGATCCGGGA 57.799 42.857 0.00 0.00 0.00 5.14
541 542 3.980646 TTGAAAATAATGCGATCCGGG 57.019 42.857 0.00 0.00 0.00 5.73
542 543 8.519492 AATTAATTGAAAATAATGCGATCCGG 57.481 30.769 0.00 0.00 0.00 5.14
543 544 9.993881 GAAATTAATTGAAAATAATGCGATCCG 57.006 29.630 0.39 0.00 0.00 4.18
566 567 9.865152 TCCATCATGTTTCCTCATATAATGAAA 57.135 29.630 0.00 0.00 39.11 2.69
567 568 9.865152 TTCCATCATGTTTCCTCATATAATGAA 57.135 29.630 0.00 0.00 39.11 2.57
568 569 9.288576 GTTCCATCATGTTTCCTCATATAATGA 57.711 33.333 0.00 0.00 37.76 2.57
569 570 9.070179 TGTTCCATCATGTTTCCTCATATAATG 57.930 33.333 0.00 0.00 0.00 1.90
570 571 9.818270 ATGTTCCATCATGTTTCCTCATATAAT 57.182 29.630 0.00 0.00 0.00 1.28
571 572 9.070179 CATGTTCCATCATGTTTCCTCATATAA 57.930 33.333 0.00 0.00 39.93 0.98
572 573 8.439172 TCATGTTCCATCATGTTTCCTCATATA 58.561 33.333 6.57 0.00 43.70 0.86
573 574 7.292319 TCATGTTCCATCATGTTTCCTCATAT 58.708 34.615 6.57 0.00 43.70 1.78
574 575 6.661777 TCATGTTCCATCATGTTTCCTCATA 58.338 36.000 6.57 0.00 43.70 2.15
575 576 5.512298 TCATGTTCCATCATGTTTCCTCAT 58.488 37.500 6.57 0.00 43.70 2.90
576 577 4.920999 TCATGTTCCATCATGTTTCCTCA 58.079 39.130 6.57 0.00 43.70 3.86
577 578 6.461110 AATCATGTTCCATCATGTTTCCTC 57.539 37.500 6.57 0.00 43.70 3.71
578 579 6.862469 AAATCATGTTCCATCATGTTTCCT 57.138 33.333 6.57 0.00 43.70 3.36
579 580 7.603404 TCAAAAATCATGTTCCATCATGTTTCC 59.397 33.333 6.57 0.00 43.70 3.13
580 581 8.537049 TCAAAAATCATGTTCCATCATGTTTC 57.463 30.769 6.57 0.00 43.70 2.78
581 582 8.369424 TCTCAAAAATCATGTTCCATCATGTTT 58.631 29.630 6.57 2.84 43.70 2.83
582 583 7.898918 TCTCAAAAATCATGTTCCATCATGTT 58.101 30.769 6.57 0.00 43.70 2.71
583 584 7.470935 TCTCAAAAATCATGTTCCATCATGT 57.529 32.000 6.57 0.00 43.70 3.21
584 585 8.248253 TCTTCTCAAAAATCATGTTCCATCATG 58.752 33.333 0.00 0.00 44.36 3.07
585 586 8.357290 TCTTCTCAAAAATCATGTTCCATCAT 57.643 30.769 0.00 0.00 0.00 2.45
586 587 7.764141 TCTTCTCAAAAATCATGTTCCATCA 57.236 32.000 0.00 0.00 0.00 3.07
587 588 8.464404 TGATCTTCTCAAAAATCATGTTCCATC 58.536 33.333 0.00 0.00 0.00 3.51
588 589 8.357290 TGATCTTCTCAAAAATCATGTTCCAT 57.643 30.769 0.00 0.00 0.00 3.41
589 590 7.764141 TGATCTTCTCAAAAATCATGTTCCA 57.236 32.000 0.00 0.00 0.00 3.53
590 591 8.302438 ACTTGATCTTCTCAAAAATCATGTTCC 58.698 33.333 0.00 0.00 43.20 3.62
591 592 9.339492 GACTTGATCTTCTCAAAAATCATGTTC 57.661 33.333 0.00 0.00 43.20 3.18
592 593 8.302438 GGACTTGATCTTCTCAAAAATCATGTT 58.698 33.333 0.00 0.00 43.20 2.71
593 594 7.094032 GGGACTTGATCTTCTCAAAAATCATGT 60.094 37.037 0.00 0.00 43.20 3.21
594 595 7.256286 GGGACTTGATCTTCTCAAAAATCATG 58.744 38.462 0.00 0.00 43.20 3.07
595 596 6.094603 CGGGACTTGATCTTCTCAAAAATCAT 59.905 38.462 0.00 0.00 43.20 2.45
596 597 5.412594 CGGGACTTGATCTTCTCAAAAATCA 59.587 40.000 0.00 0.00 43.20 2.57
597 598 5.163713 CCGGGACTTGATCTTCTCAAAAATC 60.164 44.000 0.00 0.00 43.20 2.17
598 599 4.702131 CCGGGACTTGATCTTCTCAAAAAT 59.298 41.667 0.00 0.00 43.20 1.82
599 600 4.072131 CCGGGACTTGATCTTCTCAAAAA 58.928 43.478 0.00 0.00 43.20 1.94
600 601 3.326588 TCCGGGACTTGATCTTCTCAAAA 59.673 43.478 0.00 0.00 43.20 2.44
601 602 2.903784 TCCGGGACTTGATCTTCTCAAA 59.096 45.455 0.00 0.00 43.20 2.69
602 603 2.233922 GTCCGGGACTTGATCTTCTCAA 59.766 50.000 19.92 0.00 41.61 3.02
603 604 1.825474 GTCCGGGACTTGATCTTCTCA 59.175 52.381 19.92 0.00 0.00 3.27
604 605 1.825474 TGTCCGGGACTTGATCTTCTC 59.175 52.381 26.41 0.00 33.15 2.87
605 606 1.938585 TGTCCGGGACTTGATCTTCT 58.061 50.000 26.41 0.00 33.15 2.85
606 607 2.762535 TTGTCCGGGACTTGATCTTC 57.237 50.000 26.41 0.00 33.15 2.87
607 608 2.305927 ACATTGTCCGGGACTTGATCTT 59.694 45.455 26.41 7.11 33.15 2.40
608 609 1.909302 ACATTGTCCGGGACTTGATCT 59.091 47.619 26.41 7.41 33.15 2.75
609 610 2.009774 CACATTGTCCGGGACTTGATC 58.990 52.381 26.41 0.80 33.15 2.92
610 611 1.340017 CCACATTGTCCGGGACTTGAT 60.340 52.381 26.41 15.14 33.15 2.57
611 612 0.036164 CCACATTGTCCGGGACTTGA 59.964 55.000 26.41 13.63 33.15 3.02
612 613 1.586154 GCCACATTGTCCGGGACTTG 61.586 60.000 26.41 23.57 33.15 3.16
613 614 1.303317 GCCACATTGTCCGGGACTT 60.303 57.895 26.41 12.39 33.15 3.01
614 615 2.063015 TTGCCACATTGTCCGGGACT 62.063 55.000 26.41 5.90 33.15 3.85
615 616 1.586154 CTTGCCACATTGTCCGGGAC 61.586 60.000 20.36 20.36 0.00 4.46
616 617 1.303236 CTTGCCACATTGTCCGGGA 60.303 57.895 0.00 0.00 0.00 5.14
617 618 1.603455 ACTTGCCACATTGTCCGGG 60.603 57.895 0.00 0.00 0.00 5.73
618 619 0.888736 TCACTTGCCACATTGTCCGG 60.889 55.000 0.00 0.00 0.00 5.14
619 620 1.167851 ATCACTTGCCACATTGTCCG 58.832 50.000 0.00 0.00 0.00 4.79
620 621 3.609853 TCTATCACTTGCCACATTGTCC 58.390 45.455 0.00 0.00 0.00 4.02
621 622 5.824904 ATTCTATCACTTGCCACATTGTC 57.175 39.130 0.00 0.00 0.00 3.18
622 623 7.886629 ATAATTCTATCACTTGCCACATTGT 57.113 32.000 0.00 0.00 0.00 2.71
623 624 9.836076 CATATAATTCTATCACTTGCCACATTG 57.164 33.333 0.00 0.00 0.00 2.82
624 625 9.578576 ACATATAATTCTATCACTTGCCACATT 57.421 29.630 0.00 0.00 0.00 2.71
625 626 9.224267 GACATATAATTCTATCACTTGCCACAT 57.776 33.333 0.00 0.00 0.00 3.21
626 627 8.210265 TGACATATAATTCTATCACTTGCCACA 58.790 33.333 0.00 0.00 0.00 4.17
627 628 8.607441 TGACATATAATTCTATCACTTGCCAC 57.393 34.615 0.00 0.00 0.00 5.01
628 629 9.797642 ATTGACATATAATTCTATCACTTGCCA 57.202 29.630 0.00 0.00 0.00 4.92
647 648 9.028284 ACTACAGGATCAATTTGAAATTGACAT 57.972 29.630 29.26 18.10 40.37 3.06
648 649 8.408043 ACTACAGGATCAATTTGAAATTGACA 57.592 30.769 29.26 13.55 40.37 3.58
649 650 9.346725 GAACTACAGGATCAATTTGAAATTGAC 57.653 33.333 29.26 22.40 40.37 3.18
650 651 9.076781 TGAACTACAGGATCAATTTGAAATTGA 57.923 29.630 28.94 28.94 41.59 2.57
651 652 9.350357 CTGAACTACAGGATCAATTTGAAATTG 57.650 33.333 21.36 21.36 42.39 2.32
652 653 9.300681 TCTGAACTACAGGATCAATTTGAAATT 57.699 29.630 2.68 0.00 45.76 1.82
653 654 8.868522 TCTGAACTACAGGATCAATTTGAAAT 57.131 30.769 2.68 0.00 45.76 2.17
654 655 8.690203 TTCTGAACTACAGGATCAATTTGAAA 57.310 30.769 2.68 0.00 45.76 2.69
655 656 8.567948 GTTTCTGAACTACAGGATCAATTTGAA 58.432 33.333 2.68 0.00 45.76 2.69
656 657 7.939039 AGTTTCTGAACTACAGGATCAATTTGA 59.061 33.333 0.75 0.75 44.13 2.69
657 658 8.103948 AGTTTCTGAACTACAGGATCAATTTG 57.896 34.615 0.00 0.00 44.13 2.32
672 673 9.424319 TGTCAAATACTCTGATAGTTTCTGAAC 57.576 33.333 0.00 0.00 39.80 3.18
673 674 9.996554 TTGTCAAATACTCTGATAGTTTCTGAA 57.003 29.630 0.00 0.00 39.80 3.02
674 675 9.996554 TTTGTCAAATACTCTGATAGTTTCTGA 57.003 29.630 0.00 0.00 39.80 3.27
969 970 1.215647 GACTGATGGTTCGCTCGGT 59.784 57.895 0.00 0.00 33.72 4.69
973 974 0.969149 TGAGTGACTGATGGTTCGCT 59.031 50.000 0.00 0.00 0.00 4.93
974 975 1.071605 GTGAGTGACTGATGGTTCGC 58.928 55.000 0.00 0.00 0.00 4.70
975 976 2.600731 GAGTGAGTGACTGATGGTTCG 58.399 52.381 0.00 0.00 33.83 3.95
976 977 2.564947 AGGAGTGAGTGACTGATGGTTC 59.435 50.000 0.00 0.00 33.83 3.62
977 978 2.564947 GAGGAGTGAGTGACTGATGGTT 59.435 50.000 0.00 0.00 33.83 3.67
1418 1440 7.543172 CACTAACAATAGTTGCTCTTACCGTAA 59.457 37.037 0.00 0.00 40.44 3.18
1521 1544 4.201970 CCAGCTTTGTACTTCGGTTTTCAA 60.202 41.667 0.00 0.00 0.00 2.69
1529 1552 1.531149 CCACACCAGCTTTGTACTTCG 59.469 52.381 0.00 0.00 0.00 3.79
2136 3159 6.608002 TCTTTAAGGAGGTCTCTATCCACTTC 59.392 42.308 0.00 0.00 38.12 3.01
2144 3167 7.700846 TCTTCTCTTCTTTAAGGAGGTCTCTA 58.299 38.462 0.00 0.00 33.22 2.43
2443 3488 7.871973 ACATCATCTTAGAGCATTACAGATCAC 59.128 37.037 0.00 0.00 0.00 3.06
2498 3543 5.532779 GCAGCAGGCTTAGATAATAAGGTTT 59.467 40.000 0.00 0.00 40.25 3.27
2559 3604 5.741011 TGTTACAACAAACTTCTCAGGACT 58.259 37.500 0.00 0.00 35.67 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.