Multiple sequence alignment - TraesCS5D01G248400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G248400 chr5D 100.000 2451 0 0 1 2451 355218402 355220852 0.000000e+00 4527.0
1 TraesCS5D01G248400 chr5D 100.000 2078 0 0 2841 4918 355221242 355223319 0.000000e+00 3838.0
2 TraesCS5D01G248400 chr5D 95.988 648 26 0 4271 4918 431895063 431895710 0.000000e+00 1053.0
3 TraesCS5D01G248400 chr5D 95.833 648 27 0 4271 4918 368728722 368728075 0.000000e+00 1048.0
4 TraesCS5D01G248400 chr5D 85.890 163 17 3 3180 3336 42084356 42084194 8.470000e-38 169.0
5 TraesCS5D01G248400 chr5D 84.536 97 8 6 4178 4270 230245631 230245538 6.780000e-14 89.8
6 TraesCS5D01G248400 chr5B 94.733 1348 66 1 1109 2451 420011801 420013148 0.000000e+00 2091.0
7 TraesCS5D01G248400 chr5B 87.288 1062 78 19 3170 4184 420013815 420014866 0.000000e+00 1160.0
8 TraesCS5D01G248400 chr5B 93.393 333 18 3 2841 3173 420013171 420013499 1.590000e-134 490.0
9 TraesCS5D01G248400 chr5B 85.441 261 32 4 9 268 420010615 420010870 2.920000e-67 267.0
10 TraesCS5D01G248400 chr5B 80.545 257 27 11 3187 3420 446430455 446430711 5.060000e-40 176.0
11 TraesCS5D01G248400 chr5B 91.339 127 10 1 3187 3312 446824271 446824397 6.540000e-39 172.0
12 TraesCS5D01G248400 chr5B 86.335 161 15 5 3183 3336 447183491 447183331 8.470000e-38 169.0
13 TraesCS5D01G248400 chr5B 79.459 185 17 10 666 847 420011435 420011601 1.450000e-20 111.0
14 TraesCS5D01G248400 chr5A 89.222 1466 129 10 999 2451 413220171 413221620 0.000000e+00 1805.0
15 TraesCS5D01G248400 chr5A 90.040 251 25 0 2844 3094 413221646 413221896 4.750000e-85 326.0
16 TraesCS5D01G248400 chr5A 90.323 93 8 1 4178 4270 516791157 516791066 2.400000e-23 121.0
17 TraesCS5D01G248400 chr5A 85.841 113 7 5 455 558 513909245 513909357 1.450000e-20 111.0
18 TraesCS5D01G248400 chr2D 95.448 703 27 2 4216 4918 184969219 184969916 0.000000e+00 1116.0
19 TraesCS5D01G248400 chr2D 86.022 93 8 4 4178 4270 15823920 15823833 1.460000e-15 95.3
20 TraesCS5D01G248400 chr2D 81.373 102 17 2 451 551 45090189 45090289 1.130000e-11 82.4
21 TraesCS5D01G248400 chr3D 96.451 648 23 0 4271 4918 558354122 558354769 0.000000e+00 1070.0
22 TraesCS5D01G248400 chr3D 79.070 215 32 8 3183 3385 458915887 458915674 8.590000e-28 135.0
23 TraesCS5D01G248400 chr7D 95.988 648 25 1 4271 4918 21169898 21170544 0.000000e+00 1051.0
24 TraesCS5D01G248400 chr7D 89.231 65 7 0 288 352 575899188 575899124 1.130000e-11 82.4
25 TraesCS5D01G248400 chrUn 95.833 648 27 0 4271 4918 10824703 10825350 0.000000e+00 1048.0
26 TraesCS5D01G248400 chr1B 95.833 648 27 0 4271 4918 678204597 678203950 0.000000e+00 1048.0
27 TraesCS5D01G248400 chr1B 92.500 40 2 1 4241 4279 14934218 14934257 6.880000e-04 56.5
28 TraesCS5D01G248400 chr7B 95.827 647 27 0 4272 4918 74697957 74698603 0.000000e+00 1046.0
29 TraesCS5D01G248400 chr7B 100.000 58 0 0 4177 4234 74697781 74697838 1.870000e-19 108.0
30 TraesCS5D01G248400 chr7B 84.946 93 13 1 460 551 623563669 623563577 5.240000e-15 93.5
31 TraesCS5D01G248400 chr7B 82.353 102 15 3 451 551 716999094 716999193 8.770000e-13 86.1
32 TraesCS5D01G248400 chr7B 81.731 104 16 3 451 551 623502452 623502349 3.150000e-12 84.2
33 TraesCS5D01G248400 chr7B 80.769 104 17 3 451 551 623520329 623520226 1.470000e-10 78.7
34 TraesCS5D01G248400 chr7B 80.769 104 17 3 451 551 623534996 623534893 1.470000e-10 78.7
35 TraesCS5D01G248400 chr7B 100.000 33 0 0 4241 4273 460025374 460025406 1.480000e-05 62.1
36 TraesCS5D01G248400 chr7A 94.109 679 35 4 4241 4918 507549829 507550503 0.000000e+00 1027.0
37 TraesCS5D01G248400 chr7A 96.875 32 1 0 321 352 107640893 107640862 2.000000e-03 54.7
38 TraesCS5D01G248400 chr6D 80.709 254 26 7 3180 3410 348087856 348087603 5.060000e-40 176.0
39 TraesCS5D01G248400 chr6D 90.226 133 11 2 3182 3312 408691756 408691624 6.540000e-39 172.0
40 TraesCS5D01G248400 chr6D 77.976 168 30 6 3258 3418 3165047 3164880 1.130000e-16 99.0
41 TraesCS5D01G248400 chr1D 90.370 135 11 2 3180 3312 344598203 344598337 5.060000e-40 176.0
42 TraesCS5D01G248400 chr1D 83.036 112 15 3 443 551 349546115 349546005 1.130000e-16 99.0
43 TraesCS5D01G248400 chr1D 98.182 55 1 0 4178 4232 7108479 7108533 4.050000e-16 97.1
44 TraesCS5D01G248400 chr4A 88.542 96 9 2 4176 4270 641019893 641019799 1.120000e-21 115.0
45 TraesCS5D01G248400 chr4A 83.696 92 14 1 459 550 585541032 585541122 8.770000e-13 86.1
46 TraesCS5D01G248400 chr1A 89.247 93 7 1 4178 4270 58272046 58271957 4.020000e-21 113.0
47 TraesCS5D01G248400 chr1A 83.333 78 12 1 446 522 516581597 516581520 2.460000e-08 71.3
48 TraesCS5D01G248400 chr6A 100.000 58 0 0 4177 4234 341400927 341400870 1.870000e-19 108.0
49 TraesCS5D01G248400 chr4D 91.667 72 4 1 4177 4248 374075212 374075143 1.130000e-16 99.0
50 TraesCS5D01G248400 chr3B 80.734 109 17 3 446 551 707242810 707242703 1.130000e-11 82.4
51 TraesCS5D01G248400 chr4B 81.818 99 15 2 451 546 636609366 636609268 4.080000e-11 80.5
52 TraesCS5D01G248400 chr4B 97.436 39 1 0 288 326 584848778 584848816 3.180000e-07 67.6
53 TraesCS5D01G248400 chr4B 97.436 39 1 0 288 326 584874066 584874104 3.180000e-07 67.6
54 TraesCS5D01G248400 chr4B 97.436 39 1 0 288 326 584899446 584899484 3.180000e-07 67.6
55 TraesCS5D01G248400 chr4B 97.297 37 1 0 293 329 40865699 40865735 4.110000e-06 63.9
56 TraesCS5D01G248400 chr2A 92.308 52 4 0 281 332 656999482 656999431 1.900000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G248400 chr5D 355218402 355223319 4917 False 4182.5 4527 100.0000 1 4918 2 chr5D.!!$F2 4917
1 TraesCS5D01G248400 chr5D 431895063 431895710 647 False 1053.0 1053 95.9880 4271 4918 1 chr5D.!!$F1 647
2 TraesCS5D01G248400 chr5D 368728075 368728722 647 True 1048.0 1048 95.8330 4271 4918 1 chr5D.!!$R3 647
3 TraesCS5D01G248400 chr5B 420010615 420014866 4251 False 823.8 2091 88.0628 9 4184 5 chr5B.!!$F3 4175
4 TraesCS5D01G248400 chr5A 413220171 413221896 1725 False 1065.5 1805 89.6310 999 3094 2 chr5A.!!$F2 2095
5 TraesCS5D01G248400 chr2D 184969219 184969916 697 False 1116.0 1116 95.4480 4216 4918 1 chr2D.!!$F2 702
6 TraesCS5D01G248400 chr3D 558354122 558354769 647 False 1070.0 1070 96.4510 4271 4918 1 chr3D.!!$F1 647
7 TraesCS5D01G248400 chr7D 21169898 21170544 646 False 1051.0 1051 95.9880 4271 4918 1 chr7D.!!$F1 647
8 TraesCS5D01G248400 chrUn 10824703 10825350 647 False 1048.0 1048 95.8330 4271 4918 1 chrUn.!!$F1 647
9 TraesCS5D01G248400 chr1B 678203950 678204597 647 True 1048.0 1048 95.8330 4271 4918 1 chr1B.!!$R1 647
10 TraesCS5D01G248400 chr7B 74697781 74698603 822 False 577.0 1046 97.9135 4177 4918 2 chr7B.!!$F3 741
11 TraesCS5D01G248400 chr7A 507549829 507550503 674 False 1027.0 1027 94.1090 4241 4918 1 chr7A.!!$F1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 1254 0.038251 CACTCGTCAAGTAGGCAGCA 60.038 55.0 0.00 0.0 36.07 4.41 F
996 1298 0.179105 TGTCAAACACACGTACGGCT 60.179 50.0 21.06 0.0 0.00 5.52 F
1107 1415 0.253160 AGAAGGCCATACTGACCCCA 60.253 55.0 5.01 0.0 0.00 4.96 F
1763 2071 0.603707 CTGCACATGGACCTCGTGTT 60.604 55.0 13.32 0.0 42.56 3.32 F
3119 3438 0.252012 CCTCAGAGGAGTCACCACCT 60.252 60.0 11.62 0.0 37.67 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2368 2687 0.543174 AGCTCGGACTGGACCTTTCT 60.543 55.0 0.00 0.0 0.00 2.52 R
2898 3217 0.602106 CTCTACCCGGATCGCGTCTA 60.602 60.0 0.73 0.0 0.00 2.59 R
3058 3377 0.033504 CGTAGGTGCACAGGTTGAGT 59.966 55.0 20.43 0.0 0.00 3.41 R
3680 4338 0.105408 GGTCCAATTGCATCATGGCC 59.895 55.0 0.00 0.0 34.13 5.36 R
4096 4778 0.035439 AACATGATGGGGGTGACGAC 60.035 55.0 0.00 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.862512 CAATGCCGCGTTAAACAGAAT 58.137 42.857 4.92 0.00 0.00 2.40
36 37 3.944422 ATGCCGCGTTAAACAGAATAG 57.056 42.857 4.92 0.00 0.00 1.73
37 38 1.395608 TGCCGCGTTAAACAGAATAGC 59.604 47.619 4.92 0.00 0.00 2.97
53 55 9.908152 AACAGAATAGCTGGTTATTTTAACAAC 57.092 29.630 0.00 0.00 43.69 3.32
55 57 8.447833 CAGAATAGCTGGTTATTTTAACAACGA 58.552 33.333 0.00 0.00 41.07 3.85
64 66 8.776470 TGGTTATTTTAACAACGAGGAGTTTAG 58.224 33.333 0.00 0.00 42.02 1.85
70 72 3.391049 ACAACGAGGAGTTTAGCTGTTC 58.609 45.455 0.00 0.00 42.02 3.18
82 84 6.711277 AGTTTAGCTGTTCAGGTGATGATTA 58.289 36.000 13.70 0.00 37.89 1.75
84 86 7.281774 AGTTTAGCTGTTCAGGTGATGATTATG 59.718 37.037 13.70 0.00 37.89 1.90
86 88 4.164796 AGCTGTTCAGGTGATGATTATGGA 59.835 41.667 3.67 0.00 37.89 3.41
96 98 9.123902 CAGGTGATGATTATGGAATGAAAACTA 57.876 33.333 0.00 0.00 0.00 2.24
120 122 2.232941 TGGAAAATAAGCCGAGTCGACT 59.767 45.455 20.18 20.18 0.00 4.18
121 123 2.603560 GGAAAATAAGCCGAGTCGACTG 59.396 50.000 25.58 14.86 0.00 3.51
122 124 3.251571 GAAAATAAGCCGAGTCGACTGT 58.748 45.455 25.58 0.00 0.00 3.55
129 131 1.132643 GCCGAGTCGACTGTAACAGAT 59.867 52.381 25.58 0.00 35.18 2.90
130 132 2.353889 GCCGAGTCGACTGTAACAGATA 59.646 50.000 25.58 0.00 35.18 1.98
143 145 6.765989 ACTGTAACAGATAAACACTTTGCTCA 59.234 34.615 0.00 0.00 35.18 4.26
152 154 4.574599 AACACTTTGCTCATCTGGAAAC 57.425 40.909 0.00 0.00 0.00 2.78
165 167 2.163509 CTGGAAACTGAGGAGAGACGA 58.836 52.381 0.00 0.00 0.00 4.20
173 175 1.680207 TGAGGAGAGACGATGCATCAG 59.320 52.381 25.70 19.44 0.00 2.90
179 181 2.499289 AGAGACGATGCATCAGGAAAGT 59.501 45.455 25.70 14.18 0.00 2.66
182 184 2.002586 ACGATGCATCAGGAAAGTTCG 58.997 47.619 25.70 12.06 0.00 3.95
183 185 2.270923 CGATGCATCAGGAAAGTTCGA 58.729 47.619 25.70 0.00 0.00 3.71
184 186 2.672874 CGATGCATCAGGAAAGTTCGAA 59.327 45.455 25.70 0.00 0.00 3.71
185 187 3.310774 CGATGCATCAGGAAAGTTCGAAT 59.689 43.478 25.70 0.00 0.00 3.34
186 188 4.507756 CGATGCATCAGGAAAGTTCGAATA 59.492 41.667 25.70 0.00 0.00 1.75
192 194 1.829222 AGGAAAGTTCGAATAGGCCGA 59.171 47.619 0.00 0.00 0.00 5.54
198 200 2.167693 AGTTCGAATAGGCCGATGACAA 59.832 45.455 0.00 0.00 35.84 3.18
230 232 7.750014 CGTGAACAATGACATCATTTGATAACA 59.250 33.333 4.32 0.00 43.48 2.41
231 233 9.409312 GTGAACAATGACATCATTTGATAACAA 57.591 29.630 4.32 0.00 43.48 2.83
240 242 8.125978 ACATCATTTGATAACAACCTTGTGAT 57.874 30.769 0.00 0.00 35.44 3.06
251 253 1.632409 ACCTTGTGATCACCAGAGCAT 59.368 47.619 24.63 7.58 42.88 3.79
252 254 2.014857 CCTTGTGATCACCAGAGCATG 58.985 52.381 24.63 7.04 42.88 4.06
253 255 1.400846 CTTGTGATCACCAGAGCATGC 59.599 52.381 22.85 10.51 42.88 4.06
264 266 2.158856 CCAGAGCATGCTAAGGACATGA 60.159 50.000 26.15 0.00 46.33 3.07
268 270 4.054671 GAGCATGCTAAGGACATGACTAC 58.945 47.826 22.74 0.00 46.33 2.73
269 271 3.708631 AGCATGCTAAGGACATGACTACT 59.291 43.478 21.21 0.00 46.33 2.57
271 273 4.878397 GCATGCTAAGGACATGACTACTTT 59.122 41.667 11.37 0.00 46.33 2.66
273 275 6.127897 GCATGCTAAGGACATGACTACTTTTT 60.128 38.462 11.37 0.00 46.33 1.94
294 383 2.581216 TTCTCGGTGTGACTAGGTCT 57.419 50.000 0.00 0.00 33.15 3.85
302 391 2.160022 GTGTGACTAGGTCTGAGTCGAC 59.840 54.545 7.70 7.70 45.29 4.20
304 393 2.417239 GTGACTAGGTCTGAGTCGACTG 59.583 54.545 25.58 9.95 45.29 3.51
317 406 3.219052 GTCGACTGAGACTTAACCAGG 57.781 52.381 8.70 0.00 38.09 4.45
318 407 2.557490 GTCGACTGAGACTTAACCAGGT 59.443 50.000 8.70 0.00 38.09 4.00
319 408 2.818432 TCGACTGAGACTTAACCAGGTC 59.182 50.000 0.00 0.00 32.52 3.85
320 409 2.820787 CGACTGAGACTTAACCAGGTCT 59.179 50.000 0.00 0.00 44.29 3.85
326 415 2.820787 AGACTTAACCAGGTCTCAGTCG 59.179 50.000 15.48 0.00 38.25 4.18
327 416 2.818432 GACTTAACCAGGTCTCAGTCGA 59.182 50.000 9.13 0.00 0.00 4.20
328 417 2.557490 ACTTAACCAGGTCTCAGTCGAC 59.443 50.000 7.70 7.70 0.00 4.20
329 418 2.581216 TAACCAGGTCTCAGTCGACT 57.419 50.000 13.58 13.58 34.38 4.18
330 419 0.962489 AACCAGGTCTCAGTCGACTG 59.038 55.000 34.76 34.76 45.08 3.51
342 431 2.896243 GTCGACTGAGACTTAGCGAA 57.104 50.000 8.70 0.00 38.09 4.70
343 432 2.776330 GTCGACTGAGACTTAGCGAAG 58.224 52.381 8.70 4.88 38.09 3.79
356 445 6.268825 ACTTAGCGAAGTCTCAATCAAGTA 57.731 37.500 6.37 0.00 42.50 2.24
362 451 6.531948 AGCGAAGTCTCAATCAAGTAACATAC 59.468 38.462 0.00 0.00 0.00 2.39
363 452 6.531948 GCGAAGTCTCAATCAAGTAACATACT 59.468 38.462 0.00 0.00 41.73 2.12
364 453 7.253817 GCGAAGTCTCAATCAAGTAACATACTC 60.254 40.741 0.00 0.00 38.26 2.59
365 454 7.221067 CGAAGTCTCAATCAAGTAACATACTCC 59.779 40.741 0.00 0.00 38.26 3.85
366 455 6.879400 AGTCTCAATCAAGTAACATACTCCC 58.121 40.000 0.00 0.00 38.26 4.30
368 457 7.181125 AGTCTCAATCAAGTAACATACTCCCTT 59.819 37.037 0.00 0.00 38.26 3.95
370 459 7.180229 TCTCAATCAAGTAACATACTCCCTTCA 59.820 37.037 0.00 0.00 38.26 3.02
371 460 7.861629 TCAATCAAGTAACATACTCCCTTCAT 58.138 34.615 0.00 0.00 38.26 2.57
372 461 7.987458 TCAATCAAGTAACATACTCCCTTCATC 59.013 37.037 0.00 0.00 38.26 2.92
373 462 6.235231 TCAAGTAACATACTCCCTTCATCC 57.765 41.667 0.00 0.00 38.26 3.51
374 463 5.964477 TCAAGTAACATACTCCCTTCATCCT 59.036 40.000 0.00 0.00 38.26 3.24
375 464 6.098409 TCAAGTAACATACTCCCTTCATCCTC 59.902 42.308 0.00 0.00 38.26 3.71
376 465 5.782925 AGTAACATACTCCCTTCATCCTCT 58.217 41.667 0.00 0.00 32.47 3.69
377 466 6.923670 AGTAACATACTCCCTTCATCCTCTA 58.076 40.000 0.00 0.00 32.47 2.43
378 467 7.363031 AGTAACATACTCCCTTCATCCTCTAA 58.637 38.462 0.00 0.00 32.47 2.10
380 469 6.678568 ACATACTCCCTTCATCCTCTAATG 57.321 41.667 0.00 0.00 0.00 1.90
381 470 6.146760 ACATACTCCCTTCATCCTCTAATGT 58.853 40.000 0.00 0.00 0.00 2.71
384 473 8.651389 CATACTCCCTTCATCCTCTAATGTAAA 58.349 37.037 0.00 0.00 0.00 2.01
385 474 7.510675 ACTCCCTTCATCCTCTAATGTAAAA 57.489 36.000 0.00 0.00 0.00 1.52
386 475 8.107196 ACTCCCTTCATCCTCTAATGTAAAAT 57.893 34.615 0.00 0.00 0.00 1.82
387 476 8.214364 ACTCCCTTCATCCTCTAATGTAAAATC 58.786 37.037 0.00 0.00 0.00 2.17
388 477 7.217200 TCCCTTCATCCTCTAATGTAAAATCG 58.783 38.462 0.00 0.00 0.00 3.34
389 478 6.992715 CCCTTCATCCTCTAATGTAAAATCGT 59.007 38.462 0.00 0.00 0.00 3.73
390 479 7.499232 CCCTTCATCCTCTAATGTAAAATCGTT 59.501 37.037 0.00 0.00 0.00 3.85
391 480 8.893727 CCTTCATCCTCTAATGTAAAATCGTTT 58.106 33.333 0.00 0.00 0.00 3.60
394 483 8.889717 TCATCCTCTAATGTAAAATCGTTTTCC 58.110 33.333 0.00 0.00 34.19 3.13
395 484 8.673711 CATCCTCTAATGTAAAATCGTTTTCCA 58.326 33.333 0.00 0.00 34.19 3.53
396 485 8.624367 TCCTCTAATGTAAAATCGTTTTCCAA 57.376 30.769 0.00 0.00 34.19 3.53
397 486 8.726988 TCCTCTAATGTAAAATCGTTTTCCAAG 58.273 33.333 0.00 0.00 34.19 3.61
398 487 7.484959 CCTCTAATGTAAAATCGTTTTCCAAGC 59.515 37.037 0.00 0.00 34.19 4.01
399 488 8.106247 TCTAATGTAAAATCGTTTTCCAAGCT 57.894 30.769 0.00 0.00 34.19 3.74
400 489 9.221933 TCTAATGTAAAATCGTTTTCCAAGCTA 57.778 29.630 0.00 0.00 34.19 3.32
402 491 8.687824 AATGTAAAATCGTTTTCCAAGCTATG 57.312 30.769 0.00 0.00 34.19 2.23
403 492 7.209471 TGTAAAATCGTTTTCCAAGCTATGT 57.791 32.000 0.00 0.00 34.19 2.29
404 493 8.325421 TGTAAAATCGTTTTCCAAGCTATGTA 57.675 30.769 0.00 0.00 34.19 2.29
405 494 8.447833 TGTAAAATCGTTTTCCAAGCTATGTAG 58.552 33.333 0.00 0.00 34.19 2.74
406 495 7.428472 GTAAAATCGTTTTCCAAGCTATGTAGC 59.572 37.037 3.85 3.85 40.44 3.58
407 496 7.335924 TAAAATCGTTTTCCAAGCTATGTAGCT 59.664 33.333 8.69 8.69 45.97 3.32
430 519 8.253113 AGCTTGAAAAAGATGTTATATTGTGGG 58.747 33.333 0.00 0.00 0.00 4.61
431 520 7.492344 GCTTGAAAAAGATGTTATATTGTGGGG 59.508 37.037 0.00 0.00 0.00 4.96
432 521 6.872920 TGAAAAAGATGTTATATTGTGGGGC 58.127 36.000 0.00 0.00 0.00 5.80
433 522 5.869649 AAAAGATGTTATATTGTGGGGCC 57.130 39.130 0.00 0.00 0.00 5.80
434 523 3.140325 AGATGTTATATTGTGGGGCCG 57.860 47.619 0.00 0.00 0.00 6.13
435 524 2.708861 AGATGTTATATTGTGGGGCCGA 59.291 45.455 0.00 0.00 0.00 5.54
436 525 3.137544 AGATGTTATATTGTGGGGCCGAA 59.862 43.478 0.00 0.00 0.00 4.30
437 526 2.925724 TGTTATATTGTGGGGCCGAAG 58.074 47.619 0.00 0.00 0.00 3.79
482 571 8.146479 AGAAAAGAAATTTTGCACAAATCTCC 57.854 30.769 5.15 0.57 0.00 3.71
483 572 7.769970 AGAAAAGAAATTTTGCACAAATCTCCA 59.230 29.630 5.15 0.00 0.00 3.86
484 573 6.849588 AAGAAATTTTGCACAAATCTCCAC 57.150 33.333 5.15 0.00 0.00 4.02
486 575 2.132740 TTTTGCACAAATCTCCACGC 57.867 45.000 0.00 0.00 0.00 5.34
487 576 0.040514 TTTGCACAAATCTCCACGCG 60.041 50.000 3.53 3.53 0.00 6.01
497 586 0.665298 TCTCCACGCGAGATCTCATG 59.335 55.000 22.31 15.32 42.97 3.07
509 598 5.399006 GCGAGATCTCATGAATATAGCATCG 59.601 44.000 22.31 4.67 0.00 3.84
513 602 7.482474 AGATCTCATGAATATAGCATCGACTG 58.518 38.462 0.00 0.00 0.00 3.51
522 611 8.576442 TGAATATAGCATCGACTGAGACATAAA 58.424 33.333 0.00 0.00 0.00 1.40
535 624 7.499438 CTGAGACATAAACAAGTCTTAGTCG 57.501 40.000 0.00 0.00 44.61 4.18
546 635 6.624710 CAAGTCTTAGTCGACTGAGATTTG 57.375 41.667 37.44 37.44 43.88 2.32
551 640 2.417719 AGTCGACTGAGATTTGGCAAC 58.582 47.619 19.30 0.00 0.00 4.17
553 642 7.722244 CTTAGTCGACTGAGATTTGGCAACAA 61.722 42.308 28.27 9.14 42.48 2.83
570 659 5.422878 GCAACAATGTTCATTTCGTTGTTC 58.577 37.500 19.77 8.89 46.43 3.18
571 660 5.231991 GCAACAATGTTCATTTCGTTGTTCT 59.768 36.000 19.77 0.00 46.43 3.01
572 661 6.560251 GCAACAATGTTCATTTCGTTGTTCTC 60.560 38.462 19.77 5.54 46.43 2.87
573 662 6.377327 ACAATGTTCATTTCGTTGTTCTCT 57.623 33.333 0.00 0.00 40.62 3.10
575 664 7.257722 ACAATGTTCATTTCGTTGTTCTCTTT 58.742 30.769 0.00 0.00 40.62 2.52
576 665 7.759433 ACAATGTTCATTTCGTTGTTCTCTTTT 59.241 29.630 0.00 0.00 40.62 2.27
633 884 9.640963 TTTTTGGTTTTCTTTTATGTTTCTCGA 57.359 25.926 0.00 0.00 0.00 4.04
635 886 9.810545 TTTGGTTTTCTTTTATGTTTCTCGATT 57.189 25.926 0.00 0.00 0.00 3.34
690 951 4.970662 AAATATAGTTGTGCACAGCTGG 57.029 40.909 37.21 8.27 37.94 4.85
717 978 1.296392 CGGATGCAGTTGGTCCAGA 59.704 57.895 4.26 0.00 32.23 3.86
721 982 3.745480 CGGATGCAGTTGGTCCAGAATAT 60.745 47.826 4.26 0.00 32.23 1.28
722 983 4.503123 CGGATGCAGTTGGTCCAGAATATA 60.503 45.833 4.26 0.00 32.23 0.86
723 984 4.757149 GGATGCAGTTGGTCCAGAATATAC 59.243 45.833 0.00 0.00 32.23 1.47
724 985 3.792401 TGCAGTTGGTCCAGAATATACG 58.208 45.455 0.00 0.00 0.00 3.06
726 987 3.741388 GCAGTTGGTCCAGAATATACGCT 60.741 47.826 0.00 0.00 0.00 5.07
728 989 5.223382 CAGTTGGTCCAGAATATACGCTAG 58.777 45.833 0.00 0.00 0.00 3.42
729 990 5.009710 CAGTTGGTCCAGAATATACGCTAGA 59.990 44.000 0.00 0.00 0.00 2.43
732 993 3.506455 GGTCCAGAATATACGCTAGAGCA 59.494 47.826 1.89 0.00 42.21 4.26
734 995 5.336744 GTCCAGAATATACGCTAGAGCATC 58.663 45.833 1.89 0.00 42.21 3.91
735 996 4.399618 TCCAGAATATACGCTAGAGCATCC 59.600 45.833 1.89 0.00 42.21 3.51
736 997 4.158579 CCAGAATATACGCTAGAGCATCCA 59.841 45.833 1.89 0.00 42.21 3.41
738 999 5.013547 AGAATATACGCTAGAGCATCCAGT 58.986 41.667 1.89 0.00 42.21 4.00
739 1000 6.094186 CAGAATATACGCTAGAGCATCCAGTA 59.906 42.308 1.89 0.00 42.21 2.74
740 1001 6.659668 AGAATATACGCTAGAGCATCCAGTAA 59.340 38.462 1.89 0.00 42.21 2.24
741 1002 7.340743 AGAATATACGCTAGAGCATCCAGTAAT 59.659 37.037 1.89 0.00 42.21 1.89
742 1003 5.730296 ATACGCTAGAGCATCCAGTAATT 57.270 39.130 1.89 0.00 42.21 1.40
743 1004 3.722147 ACGCTAGAGCATCCAGTAATTG 58.278 45.455 1.89 0.00 42.21 2.32
744 1005 2.478134 CGCTAGAGCATCCAGTAATTGC 59.522 50.000 1.89 0.00 42.21 3.56
745 1006 2.810852 GCTAGAGCATCCAGTAATTGCC 59.189 50.000 0.00 0.00 41.59 4.52
746 1007 3.495806 GCTAGAGCATCCAGTAATTGCCT 60.496 47.826 0.00 0.00 41.59 4.75
747 1008 3.659183 AGAGCATCCAGTAATTGCCTT 57.341 42.857 0.00 0.00 37.07 4.35
748 1009 4.778213 AGAGCATCCAGTAATTGCCTTA 57.222 40.909 0.00 0.00 37.07 2.69
749 1010 5.316158 AGAGCATCCAGTAATTGCCTTAT 57.684 39.130 0.00 0.00 37.07 1.73
750 1011 6.439636 AGAGCATCCAGTAATTGCCTTATA 57.560 37.500 0.00 0.00 37.07 0.98
800 1061 9.788960 ATAAAGAAGAAAACAACTTGTCTGAAC 57.211 29.630 0.00 0.00 0.00 3.18
804 1067 3.382083 AAACAACTTGTCTGAACCCCT 57.618 42.857 0.00 0.00 0.00 4.79
813 1076 4.927267 TGTCTGAACCCCTAATTGACAT 57.073 40.909 0.00 0.00 0.00 3.06
822 1085 4.728860 ACCCCTAATTGACATCTCTTCCAT 59.271 41.667 0.00 0.00 0.00 3.41
830 1093 3.276857 GACATCTCTTCCATGCACACAT 58.723 45.455 0.00 0.00 36.79 3.21
843 1106 3.181367 CACATGCGTGCCTTCCTC 58.819 61.111 5.64 0.00 36.06 3.71
844 1107 2.434884 ACATGCGTGCCTTCCTCG 60.435 61.111 5.64 0.00 0.00 4.63
845 1108 2.434884 CATGCGTGCCTTCCTCGT 60.435 61.111 0.00 0.00 33.27 4.18
846 1109 2.434884 ATGCGTGCCTTCCTCGTG 60.435 61.111 0.00 0.00 33.27 4.35
847 1110 3.958147 ATGCGTGCCTTCCTCGTGG 62.958 63.158 0.00 0.00 33.27 4.94
852 1115 2.044946 GCCTTCCTCGTGGGCATT 60.045 61.111 3.23 0.00 44.69 3.56
853 1116 1.678970 GCCTTCCTCGTGGGCATTT 60.679 57.895 3.23 0.00 44.69 2.32
855 1118 0.322456 CCTTCCTCGTGGGCATTTCA 60.322 55.000 3.23 0.00 34.39 2.69
856 1119 1.683011 CCTTCCTCGTGGGCATTTCAT 60.683 52.381 3.23 0.00 34.39 2.57
857 1120 2.094675 CTTCCTCGTGGGCATTTCATT 58.905 47.619 3.23 0.00 34.39 2.57
858 1121 1.750193 TCCTCGTGGGCATTTCATTC 58.250 50.000 3.23 0.00 34.39 2.67
859 1122 0.740737 CCTCGTGGGCATTTCATTCC 59.259 55.000 0.00 0.00 0.00 3.01
860 1123 1.683011 CCTCGTGGGCATTTCATTCCT 60.683 52.381 0.00 0.00 0.00 3.36
862 1125 2.091541 TCGTGGGCATTTCATTCCTTC 58.908 47.619 0.00 0.00 0.00 3.46
865 1128 2.833943 GTGGGCATTTCATTCCTTCCTT 59.166 45.455 0.00 0.00 0.00 3.36
867 1130 2.432146 GGGCATTTCATTCCTTCCTTCC 59.568 50.000 0.00 0.00 0.00 3.46
869 1132 2.432146 GCATTTCATTCCTTCCTTCCCC 59.568 50.000 0.00 0.00 0.00 4.81
871 1134 3.456380 TTTCATTCCTTCCTTCCCCTG 57.544 47.619 0.00 0.00 0.00 4.45
872 1135 2.059756 TCATTCCTTCCTTCCCCTGT 57.940 50.000 0.00 0.00 0.00 4.00
874 1137 0.332972 ATTCCTTCCTTCCCCTGTGC 59.667 55.000 0.00 0.00 0.00 4.57
876 1139 1.303643 CCTTCCTTCCCCTGTGCAC 60.304 63.158 10.75 10.75 0.00 4.57
877 1140 1.303643 CTTCCTTCCCCTGTGCACC 60.304 63.158 15.69 0.00 0.00 5.01
878 1141 2.067932 CTTCCTTCCCCTGTGCACCA 62.068 60.000 15.69 1.31 0.00 4.17
879 1142 1.434513 TTCCTTCCCCTGTGCACCAT 61.435 55.000 15.69 0.00 0.00 3.55
880 1143 1.379044 CCTTCCCCTGTGCACCATC 60.379 63.158 15.69 0.00 0.00 3.51
881 1144 1.379044 CTTCCCCTGTGCACCATCC 60.379 63.158 15.69 0.00 0.00 3.51
882 1145 2.843912 CTTCCCCTGTGCACCATCCC 62.844 65.000 15.69 0.00 0.00 3.85
883 1146 3.660571 CCCCTGTGCACCATCCCA 61.661 66.667 15.69 0.00 0.00 4.37
884 1147 2.361610 CCCTGTGCACCATCCCAC 60.362 66.667 15.69 0.00 0.00 4.61
885 1148 2.747460 CCTGTGCACCATCCCACG 60.747 66.667 15.69 0.00 34.77 4.94
886 1149 2.747460 CTGTGCACCATCCCACGG 60.747 66.667 15.69 0.00 34.77 4.94
889 1152 4.028490 TGCACCATCCCACGGGTC 62.028 66.667 1.07 0.00 34.45 4.46
891 1154 4.467084 CACCATCCCACGGGTCCG 62.467 72.222 7.97 7.97 46.03 4.79
894 1157 4.175337 CATCCCACGGGTCCGCAT 62.175 66.667 9.55 0.00 44.19 4.73
895 1158 2.445085 ATCCCACGGGTCCGCATA 60.445 61.111 9.55 0.00 44.19 3.14
896 1159 1.841556 ATCCCACGGGTCCGCATAT 60.842 57.895 9.55 0.00 44.19 1.78
897 1160 0.543410 ATCCCACGGGTCCGCATATA 60.543 55.000 9.55 0.00 44.19 0.86
901 1164 2.027929 CCCACGGGTCCGCATATAAATA 60.028 50.000 9.55 0.00 44.19 1.40
902 1165 2.997986 CCACGGGTCCGCATATAAATAC 59.002 50.000 9.55 0.00 44.19 1.89
903 1166 3.306502 CCACGGGTCCGCATATAAATACT 60.307 47.826 9.55 0.00 44.19 2.12
905 1168 3.830755 ACGGGTCCGCATATAAATACTCT 59.169 43.478 9.55 0.00 44.19 3.24
906 1169 4.174009 CGGGTCCGCATATAAATACTCTG 58.826 47.826 0.00 0.00 0.00 3.35
907 1170 4.504858 GGGTCCGCATATAAATACTCTGG 58.495 47.826 0.00 0.00 0.00 3.86
908 1171 4.222145 GGGTCCGCATATAAATACTCTGGA 59.778 45.833 0.00 0.00 0.00 3.86
919 1221 1.595993 TACTCTGGACTGGAGCACGC 61.596 60.000 0.00 0.00 34.46 5.34
934 1236 0.652071 CACGCGCTAATCTGCAATCA 59.348 50.000 5.73 0.00 0.00 2.57
946 1248 3.838120 TCTGCAATCACTCGTCAAGTAG 58.162 45.455 0.00 0.00 36.07 2.57
952 1254 0.038251 CACTCGTCAAGTAGGCAGCA 60.038 55.000 0.00 0.00 36.07 4.41
954 1256 1.070134 ACTCGTCAAGTAGGCAGCAAA 59.930 47.619 0.00 0.00 36.07 3.68
955 1257 2.143122 CTCGTCAAGTAGGCAGCAAAA 58.857 47.619 0.00 0.00 0.00 2.44
957 1259 1.069227 CGTCAAGTAGGCAGCAAAACC 60.069 52.381 0.00 0.00 0.00 3.27
958 1260 1.069227 GTCAAGTAGGCAGCAAAACCG 60.069 52.381 0.00 0.00 0.00 4.44
959 1261 0.240945 CAAGTAGGCAGCAAAACCGG 59.759 55.000 0.00 0.00 0.00 5.28
960 1262 1.524008 AAGTAGGCAGCAAAACCGGC 61.524 55.000 0.00 0.00 0.00 6.13
961 1263 2.675075 TAGGCAGCAAAACCGGCC 60.675 61.111 0.00 0.00 44.96 6.13
982 1284 0.878523 CCGGTCGCTTGACTTGTCAA 60.879 55.000 14.42 14.42 42.47 3.18
990 1292 2.159572 GCTTGACTTGTCAAACACACGT 60.160 45.455 15.70 0.00 40.12 4.49
991 1293 3.062909 GCTTGACTTGTCAAACACACGTA 59.937 43.478 15.70 0.00 37.60 3.57
992 1294 4.574759 CTTGACTTGTCAAACACACGTAC 58.425 43.478 15.70 0.00 37.60 3.67
993 1295 2.599527 TGACTTGTCAAACACACGTACG 59.400 45.455 15.01 15.01 37.60 3.67
995 1297 0.651551 TTGTCAAACACACGTACGGC 59.348 50.000 21.06 0.00 33.41 5.68
996 1298 0.179105 TGTCAAACACACGTACGGCT 60.179 50.000 21.06 0.00 0.00 5.52
997 1299 0.505655 GTCAAACACACGTACGGCTC 59.494 55.000 21.06 0.00 0.00 4.70
1006 1308 1.371758 CGTACGGCTCGGATGGATG 60.372 63.158 7.57 0.00 0.00 3.51
1044 1346 2.046023 CCCAGCGTCTGCATCCAA 60.046 61.111 0.00 0.00 46.23 3.53
1058 1360 1.281925 ATCCAAATCCCCGACCAGCT 61.282 55.000 0.00 0.00 0.00 4.24
1107 1415 0.253160 AGAAGGCCATACTGACCCCA 60.253 55.000 5.01 0.00 0.00 4.96
1191 1499 4.827087 ATGCAGCTCGCGGTCCTG 62.827 66.667 6.13 11.56 46.97 3.86
1317 1625 3.418068 GTGCTGCTGCTCACCGAC 61.418 66.667 17.00 1.48 40.48 4.79
1529 1837 3.636231 CCTCTCCACCAACCGCCA 61.636 66.667 0.00 0.00 0.00 5.69
1530 1838 2.671070 CTCTCCACCAACCGCCAT 59.329 61.111 0.00 0.00 0.00 4.40
1554 1862 2.586900 GCTCTCGACATATTCTACGGC 58.413 52.381 0.00 0.00 0.00 5.68
1703 2011 0.802607 GTCCGCCGCTTCTTCTACTG 60.803 60.000 0.00 0.00 0.00 2.74
1763 2071 0.603707 CTGCACATGGACCTCGTGTT 60.604 55.000 13.32 0.00 42.56 3.32
1776 2084 1.862147 CGTGTTCTACGCCGACGAG 60.862 63.158 0.00 0.00 46.92 4.18
1785 2093 2.951745 GCCGACGAGATGCTCACG 60.952 66.667 0.00 0.00 36.55 4.35
1788 2096 2.583593 GACGAGATGCTCACGGCC 60.584 66.667 0.00 0.00 40.92 6.13
2027 2335 2.981302 CGTCACCAGCATCCCTGA 59.019 61.111 0.00 0.00 44.64 3.86
2089 2397 2.284258 AGCTCAACCTCCTCGGCT 60.284 61.111 0.00 0.00 35.61 5.52
2181 2489 5.555256 CGTCGACAAGATCATTTCATACTGC 60.555 44.000 17.16 0.00 0.00 4.40
2272 2586 1.112916 TGTGGTGAAGAGGCTGACGA 61.113 55.000 0.00 0.00 0.00 4.20
2316 2630 0.624254 TTCTACGGAGGGAGCTCTCA 59.376 55.000 17.82 0.00 35.58 3.27
2898 3217 1.682087 GGCTAAAGGAAACCGGCAGAT 60.682 52.381 0.00 0.00 0.00 2.90
3025 3344 2.060980 GGTCGAGGCCCTGAGTGAT 61.061 63.158 0.00 0.00 0.00 3.06
3027 3346 1.000359 TCGAGGCCCTGAGTGATGA 60.000 57.895 0.00 0.00 0.00 2.92
3058 3377 0.681887 TCGGTGTGGCGAGAATCCTA 60.682 55.000 0.00 0.00 0.00 2.94
3103 3422 2.270527 GAGTGGCAGCTTCCCCTC 59.729 66.667 0.00 0.00 0.00 4.30
3118 3437 1.261238 CCCTCAGAGGAGTCACCACC 61.261 65.000 19.21 0.00 37.67 4.61
3119 3438 0.252012 CCTCAGAGGAGTCACCACCT 60.252 60.000 11.62 0.00 37.67 4.00
3139 3458 2.433664 GCCACCAAGGTACGGACG 60.434 66.667 0.00 0.00 40.61 4.79
3140 3459 2.263540 CCACCAAGGTACGGACGG 59.736 66.667 0.00 0.00 0.00 4.79
3141 3460 2.277591 CCACCAAGGTACGGACGGA 61.278 63.158 0.00 0.00 0.00 4.69
3142 3461 1.080298 CACCAAGGTACGGACGGAC 60.080 63.158 0.00 0.00 0.00 4.79
3143 3462 1.531365 ACCAAGGTACGGACGGACA 60.531 57.895 9.52 0.00 0.00 4.02
3144 3463 1.214589 CCAAGGTACGGACGGACAG 59.785 63.158 9.52 0.00 0.00 3.51
3175 3813 2.987821 GTGCTTCTCACGAGACTAAACC 59.012 50.000 0.00 0.00 37.14 3.27
3189 3827 2.235891 CTAAACCTTGCCCTCCGTTTT 58.764 47.619 0.00 0.00 31.29 2.43
3223 3862 8.597662 ACGTATTAGCTTTAACTGAAGTCAAA 57.402 30.769 0.00 0.00 0.00 2.69
3319 3961 7.834068 AATATATGCAATGATGAGACGGTAC 57.166 36.000 0.00 0.00 0.00 3.34
3336 3978 4.467082 ACGGTACTGATTGGTGGTGTATAA 59.533 41.667 9.17 0.00 0.00 0.98
3342 4000 6.977213 ACTGATTGGTGGTGTATAAACAAAC 58.023 36.000 0.00 0.00 37.36 2.93
3345 4003 8.012957 TGATTGGTGGTGTATAAACAAACTTT 57.987 30.769 0.00 0.00 37.36 2.66
3389 4047 9.594478 TTGACTTTACATGAATCTAATAAGCGA 57.406 29.630 0.00 0.00 0.00 4.93
3410 4068 6.205270 AGCGAAGTAAATAAAAACGAAGGGAA 59.795 34.615 0.00 0.00 0.00 3.97
3422 4080 6.737254 AAACGAAGGGAATACTACACATTG 57.263 37.500 0.00 0.00 0.00 2.82
3431 4089 5.050769 GGAATACTACACATTGCTGATCACG 60.051 44.000 0.00 0.00 0.00 4.35
3442 4100 2.169144 TGCTGATCACGATTCATGACCT 59.831 45.455 0.00 0.00 0.00 3.85
3444 4102 3.002042 GCTGATCACGATTCATGACCTTG 59.998 47.826 0.00 0.00 0.00 3.61
3449 4107 5.147330 TCACGATTCATGACCTTGTTACT 57.853 39.130 0.00 0.00 0.00 2.24
3512 4170 3.905678 ATCTTCCTCGGCCTCGCG 61.906 66.667 0.00 0.00 36.13 5.87
3625 4283 1.070134 GCATATCCTGCGGGAGTACAA 59.930 52.381 21.28 3.17 45.86 2.41
3639 4297 1.077858 TACAAGCGCCCATGCATGA 60.078 52.632 28.31 1.16 37.05 3.07
3714 4372 4.789123 ACCCGCGTTACATGGCCC 62.789 66.667 4.92 0.00 0.00 5.80
3740 4398 0.920763 TGGAGCATGGGATGGAAGGT 60.921 55.000 0.00 0.00 0.00 3.50
3742 4400 0.257039 GAGCATGGGATGGAAGGTGT 59.743 55.000 0.00 0.00 0.00 4.16
3751 4409 3.483587 GGAAGGTGTCCTGAGGCA 58.516 61.111 0.00 0.00 43.98 4.75
3758 4416 2.887568 GTCCTGAGGCACATCGCG 60.888 66.667 0.00 0.00 43.84 5.87
3788 4446 1.066914 CAGAGCTCGAGTGCTTCAAC 58.933 55.000 15.13 0.00 44.17 3.18
3823 4481 4.457496 CGGTCTCAGCCGCCATGT 62.457 66.667 0.00 0.00 45.47 3.21
3838 4519 0.376152 CATGTCGTCTGCATTGGAGC 59.624 55.000 0.00 0.00 0.00 4.70
3851 4532 5.001874 TGCATTGGAGCTGATGAAGATATC 58.998 41.667 0.00 0.00 34.99 1.63
3869 4550 5.826737 AGATATCCTGAAGTTTCCTGCATTG 59.173 40.000 0.00 0.00 0.00 2.82
3881 4562 2.305635 TCCTGCATTGGAGCTTGACTTA 59.694 45.455 0.00 0.00 34.99 2.24
3893 4574 5.449725 GGAGCTTGACTTATTCATTCTTGGC 60.450 44.000 0.00 0.00 32.84 4.52
3898 4579 6.603237 TGACTTATTCATTCTTGGCGTATG 57.397 37.500 0.00 0.00 0.00 2.39
4020 4702 4.445452 AAGTGCATCATCAAAAATCGCT 57.555 36.364 0.00 0.00 0.00 4.93
4037 4719 0.244721 GCTGACAACCATTGCCTTCC 59.755 55.000 0.00 0.00 0.00 3.46
4039 4721 1.815003 CTGACAACCATTGCCTTCCTC 59.185 52.381 0.00 0.00 0.00 3.71
4040 4722 1.177401 GACAACCATTGCCTTCCTCC 58.823 55.000 0.00 0.00 0.00 4.30
4051 4733 1.066502 GCCTTCCTCCTGTCTCAGAAC 60.067 57.143 0.00 0.00 32.44 3.01
4052 4734 1.203523 CCTTCCTCCTGTCTCAGAACG 59.796 57.143 0.00 0.00 32.44 3.95
4072 4754 3.013921 CGGTAGTTGGTTGGTATGCAAT 58.986 45.455 0.00 0.00 0.00 3.56
4075 4757 4.096382 GGTAGTTGGTTGGTATGCAATCAG 59.904 45.833 0.00 0.00 0.00 2.90
4076 4758 2.493278 AGTTGGTTGGTATGCAATCAGC 59.507 45.455 0.00 0.00 45.96 4.26
4091 4773 2.533266 TCAGCCTCAACACTTCTCAC 57.467 50.000 0.00 0.00 0.00 3.51
4096 4778 1.056103 CTCAACACTTCTCACGAGCG 58.944 55.000 0.00 0.00 0.00 5.03
4113 4795 1.521457 CGTCGTCACCCCCATCATG 60.521 63.158 0.00 0.00 0.00 3.07
4118 4800 1.475034 CGTCACCCCCATCATGTTAGG 60.475 57.143 0.00 0.00 0.00 2.69
4119 4801 0.550914 TCACCCCCATCATGTTAGGC 59.449 55.000 0.00 0.00 0.00 3.93
4120 4802 0.819259 CACCCCCATCATGTTAGGCG 60.819 60.000 0.00 0.00 0.00 5.52
4121 4803 1.279025 ACCCCCATCATGTTAGGCGT 61.279 55.000 0.00 0.00 0.00 5.68
4122 4804 0.535102 CCCCCATCATGTTAGGCGTC 60.535 60.000 0.00 0.00 0.00 5.19
4123 4805 0.180171 CCCCATCATGTTAGGCGTCA 59.820 55.000 0.00 0.00 0.00 4.35
4124 4806 1.586422 CCCATCATGTTAGGCGTCAG 58.414 55.000 0.00 0.00 0.00 3.51
4125 4807 1.134401 CCCATCATGTTAGGCGTCAGT 60.134 52.381 0.00 0.00 0.00 3.41
4145 4827 2.422479 GTGCGTCACTACTCACTATGGA 59.578 50.000 3.20 0.00 38.13 3.41
4147 4829 3.699538 TGCGTCACTACTCACTATGGATT 59.300 43.478 0.00 0.00 0.00 3.01
4148 4830 4.045104 GCGTCACTACTCACTATGGATTG 58.955 47.826 0.00 0.00 0.00 2.67
4149 4831 4.440250 GCGTCACTACTCACTATGGATTGT 60.440 45.833 0.00 0.00 0.00 2.71
4150 4832 5.037385 CGTCACTACTCACTATGGATTGTG 58.963 45.833 0.00 0.00 35.36 3.33
4284 5049 7.392673 AGTTAGCAGTAGTGTAAGTAGCAGTAA 59.607 37.037 0.00 0.00 0.00 2.24
4318 5083 3.385193 AAGCGGTGCTGCTAAATTTTT 57.615 38.095 5.89 0.00 46.60 1.94
4644 5409 6.495706 GCATCATGCATCATCGATCATAATT 58.504 36.000 4.20 0.00 44.26 1.40
4743 5508 7.838884 ACCACATCATCATCATAGTCATCTAG 58.161 38.462 0.00 0.00 0.00 2.43
4815 5580 6.908029 ACTAGGACCTACTACCTTCTCTTAGA 59.092 42.308 0.00 0.00 37.68 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.472480 GGCATTGCTGTTAACGGTGAT 59.528 47.619 15.73 7.43 0.00 3.06
1 2 0.878416 GGCATTGCTGTTAACGGTGA 59.122 50.000 15.73 5.45 0.00 4.02
2 3 0.454285 CGGCATTGCTGTTAACGGTG 60.454 55.000 15.73 7.61 0.00 4.94
3 4 1.873165 CGGCATTGCTGTTAACGGT 59.127 52.632 15.73 0.00 0.00 4.83
4 5 1.514014 GCGGCATTGCTGTTAACGG 60.514 57.895 18.35 10.24 37.24 4.44
5 6 1.863012 CGCGGCATTGCTGTTAACG 60.863 57.895 18.35 9.67 37.24 3.18
6 7 0.386731 AACGCGGCATTGCTGTTAAC 60.387 50.000 18.35 0.00 37.24 2.01
7 8 1.157585 TAACGCGGCATTGCTGTTAA 58.842 45.000 18.35 0.26 37.24 2.01
34 35 6.465948 TCCTCGTTGTTAAAATAACCAGCTA 58.534 36.000 0.00 0.00 0.00 3.32
36 37 5.180680 ACTCCTCGTTGTTAAAATAACCAGC 59.819 40.000 0.00 0.00 0.00 4.85
37 38 6.796705 ACTCCTCGTTGTTAAAATAACCAG 57.203 37.500 0.00 0.00 0.00 4.00
40 41 8.501580 AGCTAAACTCCTCGTTGTTAAAATAAC 58.498 33.333 0.00 0.00 35.61 1.89
47 49 4.595762 ACAGCTAAACTCCTCGTTGTTA 57.404 40.909 0.00 0.00 35.61 2.41
50 52 3.390135 TGAACAGCTAAACTCCTCGTTG 58.610 45.455 0.00 0.00 35.61 4.10
53 55 2.028930 ACCTGAACAGCTAAACTCCTCG 60.029 50.000 0.00 0.00 0.00 4.63
55 57 2.972713 TCACCTGAACAGCTAAACTCCT 59.027 45.455 0.00 0.00 0.00 3.69
64 66 4.454678 TCCATAATCATCACCTGAACAGC 58.545 43.478 0.00 0.00 37.44 4.40
70 72 8.004087 AGTTTTCATTCCATAATCATCACCTG 57.996 34.615 0.00 0.00 0.00 4.00
86 88 9.150348 CGGCTTATTTTCCATTTAGTTTTCATT 57.850 29.630 0.00 0.00 0.00 2.57
96 98 4.094442 GTCGACTCGGCTTATTTTCCATTT 59.906 41.667 8.70 0.00 0.00 2.32
111 113 5.283247 GTGTTTATCTGTTACAGTCGACTCG 59.717 44.000 16.96 13.78 32.61 4.18
120 122 7.661437 AGATGAGCAAAGTGTTTATCTGTTACA 59.339 33.333 0.00 0.00 33.84 2.41
121 123 7.959651 CAGATGAGCAAAGTGTTTATCTGTTAC 59.040 37.037 14.63 0.00 42.49 2.50
122 124 7.119699 CCAGATGAGCAAAGTGTTTATCTGTTA 59.880 37.037 18.69 0.00 44.38 2.41
129 131 5.827797 AGTTTCCAGATGAGCAAAGTGTTTA 59.172 36.000 0.00 0.00 0.00 2.01
130 132 4.646492 AGTTTCCAGATGAGCAAAGTGTTT 59.354 37.500 0.00 0.00 0.00 2.83
143 145 2.757868 CGTCTCTCCTCAGTTTCCAGAT 59.242 50.000 0.00 0.00 0.00 2.90
152 154 1.680207 TGATGCATCGTCTCTCCTCAG 59.320 52.381 21.34 0.00 0.00 3.35
165 167 4.818546 CCTATTCGAACTTTCCTGATGCAT 59.181 41.667 0.00 0.00 0.00 3.96
173 175 2.304751 TCGGCCTATTCGAACTTTCC 57.695 50.000 0.00 0.00 33.42 3.13
179 181 2.093921 TGTTGTCATCGGCCTATTCGAA 60.094 45.455 0.00 0.00 40.15 3.71
182 184 2.030457 CGTTGTTGTCATCGGCCTATTC 59.970 50.000 0.00 0.00 34.40 1.75
183 185 2.006888 CGTTGTTGTCATCGGCCTATT 58.993 47.619 0.00 0.00 34.40 1.73
184 186 1.651987 CGTTGTTGTCATCGGCCTAT 58.348 50.000 0.00 0.00 34.40 2.57
185 187 1.017177 GCGTTGTTGTCATCGGCCTA 61.017 55.000 0.00 0.00 37.28 3.93
186 188 2.325082 GCGTTGTTGTCATCGGCCT 61.325 57.895 0.00 0.00 37.28 5.19
192 194 1.010580 TGTTCACGCGTTGTTGTCAT 58.989 45.000 10.22 0.00 0.00 3.06
198 200 1.010580 TGTCATTGTTCACGCGTTGT 58.989 45.000 10.22 0.00 0.00 3.32
230 232 1.421268 TGCTCTGGTGATCACAAGGTT 59.579 47.619 26.65 0.00 33.15 3.50
231 233 1.059098 TGCTCTGGTGATCACAAGGT 58.941 50.000 26.65 0.00 33.15 3.50
240 242 1.208052 GTCCTTAGCATGCTCTGGTGA 59.792 52.381 26.57 12.04 36.79 4.02
273 275 3.005472 CAGACCTAGTCACACCGAGAAAA 59.995 47.826 0.00 0.00 34.60 2.29
274 276 2.557056 CAGACCTAGTCACACCGAGAAA 59.443 50.000 0.00 0.00 34.60 2.52
275 277 2.160205 CAGACCTAGTCACACCGAGAA 58.840 52.381 0.00 0.00 34.60 2.87
276 278 1.350019 TCAGACCTAGTCACACCGAGA 59.650 52.381 0.00 0.00 34.60 4.04
277 279 1.740585 CTCAGACCTAGTCACACCGAG 59.259 57.143 0.00 0.00 34.60 4.63
279 281 1.469308 GACTCAGACCTAGTCACACCG 59.531 57.143 0.00 0.00 42.43 4.94
280 282 1.469308 CGACTCAGACCTAGTCACACC 59.531 57.143 0.00 0.00 42.91 4.16
281 283 2.160022 GTCGACTCAGACCTAGTCACAC 59.840 54.545 8.70 0.00 42.91 3.82
294 383 3.483421 TGGTTAAGTCTCAGTCGACTCA 58.517 45.455 16.96 0.38 43.14 3.41
321 410 1.732809 TCGCTAAGTCTCAGTCGACTG 59.267 52.381 34.76 34.76 43.14 3.51
322 411 2.096220 TCGCTAAGTCTCAGTCGACT 57.904 50.000 13.58 13.58 45.73 4.18
323 412 2.160022 ACTTCGCTAAGTCTCAGTCGAC 59.840 50.000 7.70 7.70 42.42 4.20
324 413 2.424557 ACTTCGCTAAGTCTCAGTCGA 58.575 47.619 0.00 0.00 42.42 4.20
325 414 2.904011 ACTTCGCTAAGTCTCAGTCG 57.096 50.000 0.00 0.00 42.42 4.18
334 423 6.586463 TGTTACTTGATTGAGACTTCGCTAAG 59.414 38.462 0.00 0.00 38.77 2.18
335 424 6.452242 TGTTACTTGATTGAGACTTCGCTAA 58.548 36.000 0.00 0.00 0.00 3.09
336 425 6.020971 TGTTACTTGATTGAGACTTCGCTA 57.979 37.500 0.00 0.00 0.00 4.26
337 426 4.883083 TGTTACTTGATTGAGACTTCGCT 58.117 39.130 0.00 0.00 0.00 4.93
338 427 5.786401 ATGTTACTTGATTGAGACTTCGC 57.214 39.130 0.00 0.00 0.00 4.70
339 428 7.221067 GGAGTATGTTACTTGATTGAGACTTCG 59.779 40.741 0.00 0.00 39.59 3.79
340 429 7.492994 GGGAGTATGTTACTTGATTGAGACTTC 59.507 40.741 0.00 0.00 39.59 3.01
341 430 7.181125 AGGGAGTATGTTACTTGATTGAGACTT 59.819 37.037 0.00 0.00 39.59 3.01
342 431 6.670027 AGGGAGTATGTTACTTGATTGAGACT 59.330 38.462 0.00 0.00 39.59 3.24
343 432 6.879400 AGGGAGTATGTTACTTGATTGAGAC 58.121 40.000 0.00 0.00 39.59 3.36
354 443 7.598759 TTAGAGGATGAAGGGAGTATGTTAC 57.401 40.000 0.00 0.00 0.00 2.50
356 445 6.617371 ACATTAGAGGATGAAGGGAGTATGTT 59.383 38.462 0.00 0.00 0.00 2.71
362 451 7.386299 CGATTTTACATTAGAGGATGAAGGGAG 59.614 40.741 0.00 0.00 0.00 4.30
363 452 7.147549 ACGATTTTACATTAGAGGATGAAGGGA 60.148 37.037 0.00 0.00 0.00 4.20
364 453 6.992715 ACGATTTTACATTAGAGGATGAAGGG 59.007 38.462 0.00 0.00 0.00 3.95
365 454 8.438676 AACGATTTTACATTAGAGGATGAAGG 57.561 34.615 0.00 0.00 0.00 3.46
368 457 8.889717 GGAAAACGATTTTACATTAGAGGATGA 58.110 33.333 0.00 0.00 33.57 2.92
370 459 8.801882 TGGAAAACGATTTTACATTAGAGGAT 57.198 30.769 4.61 0.00 38.51 3.24
371 460 8.624367 TTGGAAAACGATTTTACATTAGAGGA 57.376 30.769 8.35 0.00 42.69 3.71
372 461 7.484959 GCTTGGAAAACGATTTTACATTAGAGG 59.515 37.037 8.35 0.00 42.69 3.69
373 462 8.237267 AGCTTGGAAAACGATTTTACATTAGAG 58.763 33.333 8.35 5.34 42.69 2.43
374 463 8.106247 AGCTTGGAAAACGATTTTACATTAGA 57.894 30.769 8.35 0.00 42.69 2.10
376 465 9.781834 CATAGCTTGGAAAACGATTTTACATTA 57.218 29.630 8.35 4.39 42.69 1.90
377 466 8.303876 ACATAGCTTGGAAAACGATTTTACATT 58.696 29.630 8.35 2.88 42.69 2.71
378 467 7.826690 ACATAGCTTGGAAAACGATTTTACAT 58.173 30.769 8.35 0.00 42.69 2.29
380 469 7.428472 GCTACATAGCTTGGAAAACGATTTTAC 59.572 37.037 3.56 0.00 45.62 2.01
381 470 7.469260 GCTACATAGCTTGGAAAACGATTTTA 58.531 34.615 3.56 0.00 45.62 1.52
384 473 5.485662 GCTACATAGCTTGGAAAACGATT 57.514 39.130 3.56 0.00 45.62 3.34
404 493 8.253113 CCCACAATATAACATCTTTTTCAAGCT 58.747 33.333 0.00 0.00 0.00 3.74
405 494 7.492344 CCCCACAATATAACATCTTTTTCAAGC 59.508 37.037 0.00 0.00 0.00 4.01
406 495 7.492344 GCCCCACAATATAACATCTTTTTCAAG 59.508 37.037 0.00 0.00 0.00 3.02
407 496 7.327214 GCCCCACAATATAACATCTTTTTCAA 58.673 34.615 0.00 0.00 0.00 2.69
408 497 6.127196 GGCCCCACAATATAACATCTTTTTCA 60.127 38.462 0.00 0.00 0.00 2.69
409 498 6.280643 GGCCCCACAATATAACATCTTTTTC 58.719 40.000 0.00 0.00 0.00 2.29
410 499 5.163457 CGGCCCCACAATATAACATCTTTTT 60.163 40.000 0.00 0.00 0.00 1.94
411 500 4.340950 CGGCCCCACAATATAACATCTTTT 59.659 41.667 0.00 0.00 0.00 2.27
412 501 3.888930 CGGCCCCACAATATAACATCTTT 59.111 43.478 0.00 0.00 0.00 2.52
413 502 3.137544 TCGGCCCCACAATATAACATCTT 59.862 43.478 0.00 0.00 0.00 2.40
414 503 2.708861 TCGGCCCCACAATATAACATCT 59.291 45.455 0.00 0.00 0.00 2.90
415 504 3.134574 TCGGCCCCACAATATAACATC 57.865 47.619 0.00 0.00 0.00 3.06
416 505 3.486383 CTTCGGCCCCACAATATAACAT 58.514 45.455 0.00 0.00 0.00 2.71
417 506 2.422235 CCTTCGGCCCCACAATATAACA 60.422 50.000 0.00 0.00 0.00 2.41
418 507 2.227194 CCTTCGGCCCCACAATATAAC 58.773 52.381 0.00 0.00 0.00 1.89
419 508 1.144093 CCCTTCGGCCCCACAATATAA 59.856 52.381 0.00 0.00 0.00 0.98
420 509 0.768622 CCCTTCGGCCCCACAATATA 59.231 55.000 0.00 0.00 0.00 0.86
421 510 0.991355 TCCCTTCGGCCCCACAATAT 60.991 55.000 0.00 0.00 0.00 1.28
422 511 1.616930 TCCCTTCGGCCCCACAATA 60.617 57.895 0.00 0.00 0.00 1.90
423 512 2.938798 TCCCTTCGGCCCCACAAT 60.939 61.111 0.00 0.00 0.00 2.71
424 513 3.646715 CTCCCTTCGGCCCCACAA 61.647 66.667 0.00 0.00 0.00 3.33
425 514 3.549433 TACTCCCTTCGGCCCCACA 62.549 63.158 0.00 0.00 0.00 4.17
426 515 2.295602 TTACTCCCTTCGGCCCCAC 61.296 63.158 0.00 0.00 0.00 4.61
427 516 2.123180 TTACTCCCTTCGGCCCCA 59.877 61.111 0.00 0.00 0.00 4.96
428 517 1.632965 ATGTTACTCCCTTCGGCCCC 61.633 60.000 0.00 0.00 0.00 5.80
429 518 1.125633 TATGTTACTCCCTTCGGCCC 58.874 55.000 0.00 0.00 0.00 5.80
430 519 4.282703 TCTTATATGTTACTCCCTTCGGCC 59.717 45.833 0.00 0.00 0.00 6.13
431 520 5.464030 TCTTATATGTTACTCCCTTCGGC 57.536 43.478 0.00 0.00 0.00 5.54
432 521 8.726870 TTTTTCTTATATGTTACTCCCTTCGG 57.273 34.615 0.00 0.00 0.00 4.30
433 522 9.595823 TCTTTTTCTTATATGTTACTCCCTTCG 57.404 33.333 0.00 0.00 0.00 3.79
456 545 8.615211 GGAGATTTGTGCAAAATTTCTTTTCTT 58.385 29.630 16.70 0.00 32.21 2.52
457 546 7.769970 TGGAGATTTGTGCAAAATTTCTTTTCT 59.230 29.630 16.70 0.00 32.21 2.52
467 556 1.599171 CGCGTGGAGATTTGTGCAAAA 60.599 47.619 0.00 0.00 33.56 2.44
479 568 0.665298 TCATGAGATCTCGCGTGGAG 59.335 55.000 17.76 0.00 44.58 3.86
480 569 1.102978 TTCATGAGATCTCGCGTGGA 58.897 50.000 17.76 8.59 34.16 4.02
482 571 4.498681 GCTATATTCATGAGATCTCGCGTG 59.501 45.833 17.76 15.30 34.59 5.34
483 572 4.156739 TGCTATATTCATGAGATCTCGCGT 59.843 41.667 17.76 3.89 0.00 6.01
484 573 4.666237 TGCTATATTCATGAGATCTCGCG 58.334 43.478 17.76 11.09 0.00 5.87
486 575 6.632434 GTCGATGCTATATTCATGAGATCTCG 59.368 42.308 17.76 4.81 0.00 4.04
487 576 7.644945 CAGTCGATGCTATATTCATGAGATCTC 59.355 40.741 16.21 16.21 0.00 2.75
497 586 8.855279 GTTTATGTCTCAGTCGATGCTATATTC 58.145 37.037 0.00 0.00 0.00 1.75
509 598 7.271653 CGACTAAGACTTGTTTATGTCTCAGTC 59.728 40.741 13.51 13.51 44.82 3.51
513 602 7.495339 GTCGACTAAGACTTGTTTATGTCTC 57.505 40.000 8.70 0.00 39.58 3.36
534 623 3.058016 ACATTGTTGCCAAATCTCAGTCG 60.058 43.478 0.00 0.00 33.44 4.18
535 624 4.510038 ACATTGTTGCCAAATCTCAGTC 57.490 40.909 0.00 0.00 33.44 3.51
546 635 3.801594 ACAACGAAATGAACATTGTTGCC 59.198 39.130 20.35 0.00 37.81 4.52
551 640 7.684062 AAAGAGAACAACGAAATGAACATTG 57.316 32.000 0.69 0.00 0.00 2.82
608 859 9.810545 ATCGAGAAACATAAAAGAAAACCAAAA 57.189 25.926 0.00 0.00 0.00 2.44
610 861 9.810545 AAATCGAGAAACATAAAAGAAAACCAA 57.189 25.926 0.00 0.00 0.00 3.67
659 910 9.373603 TGTGCACAACTATATTTACGTATCTTT 57.626 29.630 19.28 0.00 0.00 2.52
660 911 8.936070 TGTGCACAACTATATTTACGTATCTT 57.064 30.769 19.28 0.00 0.00 2.40
662 913 7.169308 AGCTGTGCACAACTATATTTACGTATC 59.831 37.037 20.89 0.00 0.00 2.24
663 914 6.984474 AGCTGTGCACAACTATATTTACGTAT 59.016 34.615 20.89 0.00 0.00 3.06
664 915 6.254804 CAGCTGTGCACAACTATATTTACGTA 59.745 38.462 21.70 0.00 0.00 3.57
667 918 5.730568 GCCAGCTGTGCACAACTATATTTAC 60.731 44.000 21.70 4.00 0.00 2.01
696 957 2.690778 GGACCAACTGCATCCGCAC 61.691 63.158 0.00 0.00 45.36 5.34
700 961 2.134789 ATTCTGGACCAACTGCATCC 57.865 50.000 0.00 0.00 0.00 3.51
701 962 4.449068 CGTATATTCTGGACCAACTGCATC 59.551 45.833 0.00 0.00 0.00 3.91
714 975 5.105957 ACTGGATGCTCTAGCGTATATTCTG 60.106 44.000 0.00 0.00 45.83 3.02
717 978 6.835819 TTACTGGATGCTCTAGCGTATATT 57.164 37.500 0.00 0.00 45.83 1.28
721 982 4.796290 GCAATTACTGGATGCTCTAGCGTA 60.796 45.833 0.00 0.00 45.83 4.42
722 983 3.722147 CAATTACTGGATGCTCTAGCGT 58.278 45.455 0.00 0.00 45.83 5.07
723 984 2.478134 GCAATTACTGGATGCTCTAGCG 59.522 50.000 0.00 0.00 45.83 4.26
724 985 2.810852 GGCAATTACTGGATGCTCTAGC 59.189 50.000 0.00 0.00 39.94 3.42
726 987 4.778213 AAGGCAATTACTGGATGCTCTA 57.222 40.909 0.00 0.00 39.94 2.43
728 989 6.467677 TCTATAAGGCAATTACTGGATGCTC 58.532 40.000 0.00 0.00 39.94 4.26
729 990 6.439636 TCTATAAGGCAATTACTGGATGCT 57.560 37.500 0.00 0.00 39.94 3.79
732 993 6.439636 TGCTCTATAAGGCAATTACTGGAT 57.560 37.500 0.00 0.00 35.40 3.41
741 1002 5.819379 CAGAGAATGTTGCTCTATAAGGCAA 59.181 40.000 7.62 7.62 44.64 4.52
742 1003 5.104776 ACAGAGAATGTTGCTCTATAAGGCA 60.105 40.000 0.00 0.00 39.96 4.75
743 1004 5.363939 ACAGAGAATGTTGCTCTATAAGGC 58.636 41.667 0.00 0.00 39.96 4.35
744 1005 7.981789 TGTTACAGAGAATGTTGCTCTATAAGG 59.018 37.037 0.00 0.00 39.96 2.69
745 1006 8.932945 TGTTACAGAGAATGTTGCTCTATAAG 57.067 34.615 0.00 0.00 39.96 1.73
746 1007 9.371136 CTTGTTACAGAGAATGTTGCTCTATAA 57.629 33.333 0.00 0.00 39.96 0.98
747 1008 8.749354 TCTTGTTACAGAGAATGTTGCTCTATA 58.251 33.333 0.00 0.00 39.96 1.31
748 1009 7.615403 TCTTGTTACAGAGAATGTTGCTCTAT 58.385 34.615 0.00 0.00 39.96 1.98
749 1010 6.993079 TCTTGTTACAGAGAATGTTGCTCTA 58.007 36.000 0.00 0.00 39.96 2.43
750 1011 5.858381 TCTTGTTACAGAGAATGTTGCTCT 58.142 37.500 0.00 0.00 39.96 4.09
787 1048 5.048713 GTCAATTAGGGGTTCAGACAAGTTG 60.049 44.000 0.00 0.00 0.00 3.16
789 1050 4.104102 TGTCAATTAGGGGTTCAGACAAGT 59.896 41.667 0.00 0.00 32.26 3.16
792 1053 4.536090 AGATGTCAATTAGGGGTTCAGACA 59.464 41.667 0.00 0.00 38.67 3.41
793 1054 5.104259 AGATGTCAATTAGGGGTTCAGAC 57.896 43.478 0.00 0.00 0.00 3.51
794 1055 5.032846 AGAGATGTCAATTAGGGGTTCAGA 58.967 41.667 0.00 0.00 0.00 3.27
795 1056 5.365021 AGAGATGTCAATTAGGGGTTCAG 57.635 43.478 0.00 0.00 0.00 3.02
796 1057 5.339200 GGAAGAGATGTCAATTAGGGGTTCA 60.339 44.000 0.00 0.00 0.00 3.18
797 1058 5.126779 GGAAGAGATGTCAATTAGGGGTTC 58.873 45.833 0.00 0.00 0.00 3.62
798 1059 4.540099 TGGAAGAGATGTCAATTAGGGGTT 59.460 41.667 0.00 0.00 0.00 4.11
799 1060 4.111577 TGGAAGAGATGTCAATTAGGGGT 58.888 43.478 0.00 0.00 0.00 4.95
800 1061 4.778213 TGGAAGAGATGTCAATTAGGGG 57.222 45.455 0.00 0.00 0.00 4.79
804 1067 5.355071 GTGTGCATGGAAGAGATGTCAATTA 59.645 40.000 0.00 0.00 0.00 1.40
830 1093 4.680237 CCACGAGGAAGGCACGCA 62.680 66.667 0.00 0.00 36.89 5.24
839 1102 1.681780 GGAATGAAATGCCCACGAGGA 60.682 52.381 0.00 0.00 35.17 3.71
840 1103 0.740737 GGAATGAAATGCCCACGAGG 59.259 55.000 0.00 0.00 35.17 4.63
841 1104 1.755179 AGGAATGAAATGCCCACGAG 58.245 50.000 0.00 0.00 46.66 4.18
842 1105 2.091541 GAAGGAATGAAATGCCCACGA 58.908 47.619 0.00 0.00 46.66 4.35
843 1106 1.134946 GGAAGGAATGAAATGCCCACG 59.865 52.381 0.00 0.00 46.66 4.94
844 1107 2.460669 AGGAAGGAATGAAATGCCCAC 58.539 47.619 0.00 0.00 46.66 4.61
845 1108 2.925966 AGGAAGGAATGAAATGCCCA 57.074 45.000 0.00 0.00 46.66 5.36
846 1109 2.432146 GGAAGGAAGGAATGAAATGCCC 59.568 50.000 0.00 0.00 46.66 5.36
847 1110 2.432146 GGGAAGGAAGGAATGAAATGCC 59.568 50.000 0.00 0.00 45.33 4.40
848 1111 2.432146 GGGGAAGGAAGGAATGAAATGC 59.568 50.000 0.00 0.00 0.00 3.56
850 1113 3.337909 ACAGGGGAAGGAAGGAATGAAAT 59.662 43.478 0.00 0.00 0.00 2.17
851 1114 2.721906 ACAGGGGAAGGAAGGAATGAAA 59.278 45.455 0.00 0.00 0.00 2.69
852 1115 2.041620 CACAGGGGAAGGAAGGAATGAA 59.958 50.000 0.00 0.00 0.00 2.57
853 1116 1.635487 CACAGGGGAAGGAAGGAATGA 59.365 52.381 0.00 0.00 0.00 2.57
855 1118 0.332972 GCACAGGGGAAGGAAGGAAT 59.667 55.000 0.00 0.00 0.00 3.01
856 1119 1.065410 TGCACAGGGGAAGGAAGGAA 61.065 55.000 0.00 0.00 0.00 3.36
857 1120 1.463214 TGCACAGGGGAAGGAAGGA 60.463 57.895 0.00 0.00 0.00 3.36
858 1121 1.303643 GTGCACAGGGGAAGGAAGG 60.304 63.158 13.17 0.00 0.00 3.46
859 1122 1.303643 GGTGCACAGGGGAAGGAAG 60.304 63.158 20.43 0.00 0.00 3.46
860 1123 1.434513 ATGGTGCACAGGGGAAGGAA 61.435 55.000 20.43 0.00 0.00 3.36
862 1125 1.379044 GATGGTGCACAGGGGAAGG 60.379 63.158 20.43 0.00 0.00 3.46
865 1128 3.338250 GGGATGGTGCACAGGGGA 61.338 66.667 20.43 0.00 0.00 4.81
867 1130 2.361610 GTGGGATGGTGCACAGGG 60.362 66.667 20.43 0.00 0.00 4.45
869 1132 2.747460 CCGTGGGATGGTGCACAG 60.747 66.667 20.43 0.00 0.00 3.66
871 1134 4.344865 ACCCGTGGGATGGTGCAC 62.345 66.667 13.01 8.80 38.96 4.57
872 1135 4.028490 GACCCGTGGGATGGTGCA 62.028 66.667 13.01 0.00 38.96 4.57
874 1137 4.467084 CGGACCCGTGGGATGGTG 62.467 72.222 13.01 0.00 38.96 4.17
877 1140 2.111999 ATATGCGGACCCGTGGGATG 62.112 60.000 13.01 1.69 42.09 3.51
878 1141 0.543410 TATATGCGGACCCGTGGGAT 60.543 55.000 13.01 0.00 42.09 3.85
879 1142 0.759812 TTATATGCGGACCCGTGGGA 60.760 55.000 13.01 0.00 42.09 4.37
880 1143 0.107081 TTTATATGCGGACCCGTGGG 59.893 55.000 10.37 2.58 42.09 4.61
881 1144 2.178912 ATTTATATGCGGACCCGTGG 57.821 50.000 10.37 0.00 42.09 4.94
882 1145 3.921677 AGTATTTATATGCGGACCCGTG 58.078 45.455 10.37 0.00 42.09 4.94
883 1146 3.830755 AGAGTATTTATATGCGGACCCGT 59.169 43.478 10.37 0.00 42.09 5.28
884 1147 4.174009 CAGAGTATTTATATGCGGACCCG 58.826 47.826 3.73 3.73 43.09 5.28
885 1148 4.222145 TCCAGAGTATTTATATGCGGACCC 59.778 45.833 0.00 0.00 0.00 4.46
886 1149 5.047235 AGTCCAGAGTATTTATATGCGGACC 60.047 44.000 0.00 0.00 41.03 4.46
889 1152 5.047306 TCCAGTCCAGAGTATTTATATGCGG 60.047 44.000 0.00 0.00 0.00 5.69
891 1154 5.872070 GCTCCAGTCCAGAGTATTTATATGC 59.128 44.000 0.00 0.00 33.69 3.14
892 1155 6.870965 GTGCTCCAGTCCAGAGTATTTATATG 59.129 42.308 0.00 0.00 33.69 1.78
893 1156 6.294787 CGTGCTCCAGTCCAGAGTATTTATAT 60.295 42.308 0.00 0.00 33.69 0.86
894 1157 5.009710 CGTGCTCCAGTCCAGAGTATTTATA 59.990 44.000 0.00 0.00 33.69 0.98
895 1158 4.202161 CGTGCTCCAGTCCAGAGTATTTAT 60.202 45.833 0.00 0.00 33.69 1.40
896 1159 3.130516 CGTGCTCCAGTCCAGAGTATTTA 59.869 47.826 0.00 0.00 33.69 1.40
897 1160 2.093973 CGTGCTCCAGTCCAGAGTATTT 60.094 50.000 0.00 0.00 33.69 1.40
901 1164 2.936912 GCGTGCTCCAGTCCAGAGT 61.937 63.158 0.00 0.00 33.69 3.24
902 1165 2.125753 GCGTGCTCCAGTCCAGAG 60.126 66.667 0.00 0.00 0.00 3.35
903 1166 4.056125 CGCGTGCTCCAGTCCAGA 62.056 66.667 0.00 0.00 0.00 3.86
919 1221 2.196749 ACGAGTGATTGCAGATTAGCG 58.803 47.619 0.00 0.00 37.31 4.26
934 1236 0.679505 TTGCTGCCTACTTGACGAGT 59.320 50.000 0.00 0.00 42.55 4.18
962 1264 2.665185 ACAAGTCAAGCGACCGGC 60.665 61.111 0.00 0.00 43.73 6.13
963 1265 0.878523 TTGACAAGTCAAGCGACCGG 60.879 55.000 11.34 0.00 43.90 5.28
964 1266 2.600388 TTGACAAGTCAAGCGACCG 58.400 52.632 11.34 0.00 43.90 4.79
971 1273 3.061028 CGTACGTGTGTTTGACAAGTCAA 59.939 43.478 11.34 11.34 42.90 3.18
972 1274 2.599527 CGTACGTGTGTTTGACAAGTCA 59.400 45.455 7.22 0.00 42.90 3.41
973 1275 2.034339 CCGTACGTGTGTTTGACAAGTC 60.034 50.000 15.21 0.00 42.90 3.01
976 1278 0.651551 GCCGTACGTGTGTTTGACAA 59.348 50.000 15.21 0.00 35.91 3.18
982 1284 1.870055 ATCCGAGCCGTACGTGTGTT 61.870 55.000 15.21 0.00 0.00 3.32
990 1292 2.867855 GCCATCCATCCGAGCCGTA 61.868 63.158 0.00 0.00 0.00 4.02
991 1293 4.241555 GCCATCCATCCGAGCCGT 62.242 66.667 0.00 0.00 0.00 5.68
992 1294 4.996434 GGCCATCCATCCGAGCCG 62.996 72.222 0.00 0.00 33.18 5.52
1029 1331 0.379669 GGATTTGGATGCAGACGCTG 59.620 55.000 0.00 2.92 39.64 5.18
1039 1341 1.227383 GCTGGTCGGGGATTTGGAT 59.773 57.895 0.00 0.00 0.00 3.41
1044 1346 2.285368 TGGAGCTGGTCGGGGATT 60.285 61.111 0.00 0.00 0.00 3.01
1228 1536 4.699522 GACCACCGTGGCCCAGAC 62.700 72.222 17.99 0.00 42.67 3.51
1351 1659 2.046507 GACCCTCTGCTGCCACTG 60.047 66.667 0.00 0.00 0.00 3.66
1514 1822 2.350895 CATGGCGGTTGGTGGAGA 59.649 61.111 0.00 0.00 0.00 3.71
1536 1844 2.812591 GAGGCCGTAGAATATGTCGAGA 59.187 50.000 0.00 0.00 0.00 4.04
1554 1862 4.803426 GACTCCACCAGCGCGAGG 62.803 72.222 12.10 18.59 0.00 4.63
1563 1871 0.670854 GGAACAAGAGCGACTCCACC 60.671 60.000 3.66 0.00 0.00 4.61
1763 2071 1.773054 GAGCATCTCGTCGGCGTAGA 61.773 60.000 10.18 11.68 39.49 2.59
2089 2397 3.434167 GCCAGCTTATTGAGGATGGAGAA 60.434 47.826 1.27 0.00 40.99 2.87
2227 2541 0.884704 GACTGCTTCACCGCCTTCAA 60.885 55.000 0.00 0.00 0.00 2.69
2272 2586 2.351276 GGTGGTTCCCGTCATGCT 59.649 61.111 0.00 0.00 0.00 3.79
2316 2630 0.671796 TCACGGTGAACACGATGTCT 59.328 50.000 8.68 0.00 34.93 3.41
2368 2687 0.543174 AGCTCGGACTGGACCTTTCT 60.543 55.000 0.00 0.00 0.00 2.52
2854 3173 5.865085 TGATCCTTTCCCGGTAGAAATATG 58.135 41.667 0.00 0.00 35.30 1.78
2898 3217 0.602106 CTCTACCCGGATCGCGTCTA 60.602 60.000 0.73 0.00 0.00 2.59
3058 3377 0.033504 CGTAGGTGCACAGGTTGAGT 59.966 55.000 20.43 0.00 0.00 3.41
3083 3402 2.032681 GGGAAGCTGCCACTCGTT 59.967 61.111 14.44 0.00 0.00 3.85
3118 3437 1.671054 CCGTACCTTGGTGGCACAG 60.671 63.158 20.82 9.02 41.80 3.66
3119 3438 2.141448 TCCGTACCTTGGTGGCACA 61.141 57.895 20.82 2.61 40.22 4.57
3162 3481 1.002087 AGGGCAAGGTTTAGTCTCGTG 59.998 52.381 0.00 0.00 0.00 4.35
3164 3483 1.405661 GGAGGGCAAGGTTTAGTCTCG 60.406 57.143 0.00 0.00 0.00 4.04
3165 3484 1.405661 CGGAGGGCAAGGTTTAGTCTC 60.406 57.143 0.00 0.00 0.00 3.36
3189 3827 8.853345 CAGTTAAAGCTAATACGTCGAGTAAAA 58.147 33.333 0.00 0.00 39.04 1.52
3198 3837 8.597662 TTTGACTTCAGTTAAAGCTAATACGT 57.402 30.769 0.00 0.00 31.28 3.57
3308 3947 2.168521 CCACCAATCAGTACCGTCTCAT 59.831 50.000 0.00 0.00 0.00 2.90
3312 3951 1.001633 ACACCACCAATCAGTACCGTC 59.998 52.381 0.00 0.00 0.00 4.79
3319 3961 7.214467 AGTTTGTTTATACACCACCAATCAG 57.786 36.000 0.00 0.00 32.98 2.90
3382 4040 8.179615 CCCTTCGTTTTTATTTACTTCGCTTAT 58.820 33.333 0.00 0.00 0.00 1.73
3385 4043 5.702209 TCCCTTCGTTTTTATTTACTTCGCT 59.298 36.000 0.00 0.00 0.00 4.93
3387 4045 9.481800 GTATTCCCTTCGTTTTTATTTACTTCG 57.518 33.333 0.00 0.00 0.00 3.79
3404 4062 5.435686 TCAGCAATGTGTAGTATTCCCTT 57.564 39.130 0.00 0.00 0.00 3.95
3410 4068 5.262588 TCGTGATCAGCAATGTGTAGTAT 57.737 39.130 0.00 0.00 0.00 2.12
3416 4074 4.034742 TCATGAATCGTGATCAGCAATGTG 59.965 41.667 0.22 0.00 0.00 3.21
3422 4080 2.831333 AGGTCATGAATCGTGATCAGC 58.169 47.619 17.05 1.63 33.34 4.26
3431 4089 5.352569 CACCTGAGTAACAAGGTCATGAATC 59.647 44.000 0.00 0.00 31.29 2.52
3449 4107 2.795962 ATGATGGCACTCAGCACCTGA 61.796 52.381 0.00 0.00 45.18 3.86
3481 4139 4.095483 CGAGGAAGATGTTGAGGATTTTGG 59.905 45.833 0.00 0.00 0.00 3.28
3512 4170 0.462581 TGAATCGGAGCATCTGCACC 60.463 55.000 8.41 8.41 46.33 5.01
3565 4223 0.249868 CTTCTCCGTCACACTTGCCA 60.250 55.000 0.00 0.00 0.00 4.92
3625 4283 3.726558 ATGGTCATGCATGGGCGCT 62.727 57.895 25.97 5.46 45.35 5.92
3680 4338 0.105408 GGTCCAATTGCATCATGGCC 59.895 55.000 0.00 0.00 34.13 5.36
3714 4372 0.107508 ATCCCATGCTCCACGAACAG 60.108 55.000 0.00 0.00 0.00 3.16
3740 4398 2.265739 GCGATGTGCCTCAGGACA 59.734 61.111 0.00 0.00 37.76 4.02
3742 4400 4.147449 CCGCGATGTGCCTCAGGA 62.147 66.667 8.23 0.00 42.08 3.86
3758 4416 3.322318 GAGCTCTGAGGTGGTGCCC 62.322 68.421 14.96 0.00 38.26 5.36
3770 4428 0.387878 CGTTGAAGCACTCGAGCTCT 60.388 55.000 13.61 6.79 45.89 4.09
3823 4481 0.538584 ATCAGCTCCAATGCAGACGA 59.461 50.000 0.00 0.00 31.56 4.20
3838 4519 7.441760 CAGGAAACTTCAGGATATCTTCATCAG 59.558 40.741 2.05 0.00 40.21 2.90
3851 4532 2.490903 CTCCAATGCAGGAAACTTCAGG 59.509 50.000 0.00 0.00 36.92 3.86
3869 4550 5.449725 GCCAAGAATGAATAAGTCAAGCTCC 60.450 44.000 0.00 0.00 40.50 4.70
3881 4562 7.272978 AGTAAGTACATACGCCAAGAATGAAT 58.727 34.615 2.79 0.00 0.00 2.57
3939 4621 9.689075 CACGAATATTTGAGTGTACTTACAATG 57.311 33.333 9.79 0.00 38.04 2.82
4001 4683 3.545078 GTCAGCGATTTTTGATGATGCAC 59.455 43.478 0.00 0.00 33.88 4.57
4006 4688 3.567585 TGGTTGTCAGCGATTTTTGATGA 59.432 39.130 0.00 0.00 0.00 2.92
4010 4692 3.120923 GCAATGGTTGTCAGCGATTTTTG 60.121 43.478 0.00 0.00 0.00 2.44
4018 4700 0.244721 GGAAGGCAATGGTTGTCAGC 59.755 55.000 0.00 0.00 37.85 4.26
4020 4702 1.547675 GGAGGAAGGCAATGGTTGTCA 60.548 52.381 0.00 0.00 37.85 3.58
4037 4719 2.438411 ACTACCGTTCTGAGACAGGAG 58.562 52.381 9.08 5.31 31.51 3.69
4039 4721 2.352814 CCAACTACCGTTCTGAGACAGG 60.353 54.545 1.35 1.35 31.51 4.00
4040 4722 2.296471 ACCAACTACCGTTCTGAGACAG 59.704 50.000 0.00 0.00 0.00 3.51
4051 4733 2.102070 TGCATACCAACCAACTACCG 57.898 50.000 0.00 0.00 0.00 4.02
4052 4734 4.013728 TGATTGCATACCAACCAACTACC 58.986 43.478 0.00 0.00 35.99 3.18
4072 4754 1.269778 CGTGAGAAGTGTTGAGGCTGA 60.270 52.381 0.00 0.00 0.00 4.26
4075 4757 1.423395 CTCGTGAGAAGTGTTGAGGC 58.577 55.000 0.00 0.00 41.32 4.70
4076 4758 1.423395 GCTCGTGAGAAGTGTTGAGG 58.577 55.000 0.00 0.00 41.32 3.86
4096 4778 0.035439 AACATGATGGGGGTGACGAC 60.035 55.000 0.00 0.00 0.00 4.34
4104 4786 0.180171 TGACGCCTAACATGATGGGG 59.820 55.000 7.49 11.84 39.33 4.96
4113 4795 1.372499 TGACGCACTGACGCCTAAC 60.372 57.895 0.00 0.00 36.19 2.34
4118 4800 1.066114 GAGTAGTGACGCACTGACGC 61.066 60.000 18.70 12.05 45.01 5.19
4119 4801 0.237498 TGAGTAGTGACGCACTGACG 59.763 55.000 18.70 0.00 45.01 4.35
4125 4807 2.718563 TCCATAGTGAGTAGTGACGCA 58.281 47.619 0.00 0.00 32.40 5.24
4145 4827 3.952323 CTGGATCCAAAGATGAGCACAAT 59.048 43.478 17.00 0.00 30.90 2.71
4147 4829 2.356432 CCTGGATCCAAAGATGAGCACA 60.356 50.000 17.00 0.00 30.90 4.57
4148 4830 2.295885 CCTGGATCCAAAGATGAGCAC 58.704 52.381 17.00 0.00 30.90 4.40
4149 4831 1.918262 ACCTGGATCCAAAGATGAGCA 59.082 47.619 17.00 0.00 30.90 4.26
4150 4832 2.092753 TCACCTGGATCCAAAGATGAGC 60.093 50.000 17.00 0.00 30.90 4.26
4685 5450 6.872547 AGAAGTTGTATGATCGATGATGATGG 59.127 38.462 0.54 0.00 0.00 3.51
4743 5508 6.037281 GCTAAGAACAACTAAGTAGGATTGGC 59.963 42.308 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.