Multiple sequence alignment - TraesCS5D01G247600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G247600 chr5D 100.000 8789 0 0 1 8789 354932479 354941267 0.000000e+00 16231.0
1 TraesCS5D01G247600 chr5D 90.909 88 6 2 4109 4196 206683763 206683848 5.570000e-22 117.0
2 TraesCS5D01G247600 chr5B 95.286 6703 229 44 941 7598 419718879 419725539 0.000000e+00 10547.0
3 TraesCS5D01G247600 chr5B 92.550 349 20 4 7609 7955 419725593 419725937 6.130000e-136 496.0
4 TraesCS5D01G247600 chr5B 91.667 348 22 5 8442 8789 419727085 419727425 7.980000e-130 475.0
5 TraesCS5D01G247600 chr5B 91.566 83 5 2 4109 4191 219992502 219992582 7.210000e-21 113.0
6 TraesCS5D01G247600 chr5A 94.121 3861 137 34 941 4771 457074895 457078695 0.000000e+00 5790.0
7 TraesCS5D01G247600 chr5A 98.024 1518 25 4 4764 6279 457078881 457080395 0.000000e+00 2632.0
8 TraesCS5D01G247600 chr5A 96.154 1612 44 14 6350 7952 457080395 457081997 0.000000e+00 2617.0
9 TraesCS5D01G247600 chr5A 90.970 299 22 3 8491 8789 457085957 457086250 1.780000e-106 398.0
10 TraesCS5D01G247600 chr5A 97.000 100 2 1 845 944 667738683 667738781 5.460000e-37 167.0
11 TraesCS5D01G247600 chr5A 88.764 89 8 2 4109 4197 265545404 265545490 3.360000e-19 108.0
12 TraesCS5D01G247600 chr5A 87.500 64 7 1 130 193 457074824 457074886 1.220000e-08 73.1
13 TraesCS5D01G247600 chr7D 97.720 658 12 3 192 846 382109335 382108678 0.000000e+00 1129.0
14 TraesCS5D01G247600 chr7D 97.568 658 13 3 192 846 626736219 626735562 0.000000e+00 1123.0
15 TraesCS5D01G247600 chr7D 92.920 113 6 2 845 956 606849550 606849661 7.060000e-36 163.0
16 TraesCS5D01G247600 chr7D 85.600 125 18 0 2 126 109300613 109300737 1.990000e-26 132.0
17 TraesCS5D01G247600 chr6D 97.264 658 15 3 192 846 458957010 458957667 0.000000e+00 1112.0
18 TraesCS5D01G247600 chr6D 97.112 658 16 3 192 846 108478494 108477837 0.000000e+00 1107.0
19 TraesCS5D01G247600 chr6D 93.220 59 3 1 79 136 246929232 246929290 1.570000e-12 86.1
20 TraesCS5D01G247600 chr1B 97.264 658 15 3 192 846 668819337 668818680 0.000000e+00 1112.0
21 TraesCS5D01G247600 chr1B 91.463 82 6 1 4115 4196 345320529 345320609 2.590000e-20 111.0
22 TraesCS5D01G247600 chrUn 97.112 658 16 3 192 846 264060081 264059424 0.000000e+00 1107.0
23 TraesCS5D01G247600 chrUn 97.112 658 16 3 192 846 266530014 266529357 0.000000e+00 1107.0
24 TraesCS5D01G247600 chrUn 96.000 100 3 1 845 944 45123798 45123896 2.540000e-35 161.0
25 TraesCS5D01G247600 chrUn 96.000 100 3 1 845 944 86490992 86491090 2.540000e-35 161.0
26 TraesCS5D01G247600 chrUn 96.000 100 2 2 845 944 186178471 186178374 2.540000e-35 161.0
27 TraesCS5D01G247600 chrUn 96.000 100 3 1 845 944 258926069 258926167 2.540000e-35 161.0
28 TraesCS5D01G247600 chrUn 96.000 100 3 1 845 944 359638332 359638430 2.540000e-35 161.0
29 TraesCS5D01G247600 chr6B 97.112 658 16 3 192 846 151233540 151232883 0.000000e+00 1107.0
30 TraesCS5D01G247600 chr6B 96.040 101 3 1 845 945 551838284 551838383 7.060000e-36 163.0
31 TraesCS5D01G247600 chr6B 86.905 84 11 0 6483 6566 551799609 551799526 2.610000e-15 95.3
32 TraesCS5D01G247600 chr4D 97.112 658 16 3 192 846 123455703 123456360 0.000000e+00 1107.0
33 TraesCS5D01G247600 chr4D 86.339 183 25 0 3078 3260 57487742 57487560 5.380000e-47 200.0
34 TraesCS5D01G247600 chr4D 86.905 84 11 0 6483 6566 57484138 57484055 2.610000e-15 95.3
35 TraesCS5D01G247600 chr4B 76.043 839 179 18 2145 2978 86072679 86071858 4.910000e-112 416.0
36 TraesCS5D01G247600 chr4B 85.792 183 26 0 3078 3260 86071698 86071516 2.500000e-45 195.0
37 TraesCS5D01G247600 chr4B 86.905 84 11 0 6483 6566 86068329 86068246 2.610000e-15 95.3
38 TraesCS5D01G247600 chr4A 86.885 183 24 0 3078 3260 539289833 539290015 1.160000e-48 206.0
39 TraesCS5D01G247600 chr4A 86.905 84 11 0 6483 6566 539293277 539293360 2.610000e-15 95.3
40 TraesCS5D01G247600 chr2B 97.000 100 2 1 845 944 357550563 357550465 5.460000e-37 167.0
41 TraesCS5D01G247600 chr2B 89.147 129 13 1 1 129 342240462 342240589 9.130000e-35 159.0
42 TraesCS5D01G247600 chr1D 92.683 82 5 1 4115 4196 267794565 267794485 5.570000e-22 117.0
43 TraesCS5D01G247600 chr1D 88.333 60 7 0 79 138 463441741 463441800 1.220000e-08 73.1
44 TraesCS5D01G247600 chr1D 100.000 36 0 0 94 129 480706910 480706875 5.690000e-07 67.6
45 TraesCS5D01G247600 chr1A 92.683 82 5 1 4115 4196 335028624 335028704 5.570000e-22 117.0
46 TraesCS5D01G247600 chr1A 91.463 82 6 1 4115 4196 335028465 335028545 2.590000e-20 111.0
47 TraesCS5D01G247600 chr2D 100.000 37 0 0 94 130 451968216 451968180 1.580000e-07 69.4
48 TraesCS5D01G247600 chr2D 90.196 51 5 0 79 129 66153940 66153990 5.690000e-07 67.6
49 TraesCS5D01G247600 chr7A 100.000 36 0 0 94 129 735939723 735939688 5.690000e-07 67.6
50 TraesCS5D01G247600 chr3A 91.667 48 3 1 89 135 62250198 62250245 2.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G247600 chr5D 354932479 354941267 8788 False 16231.000000 16231 100.000000 1 8789 1 chr5D.!!$F2 8788
1 TraesCS5D01G247600 chr5B 419718879 419727425 8546 False 3839.333333 10547 93.167667 941 8789 3 chr5B.!!$F2 7848
2 TraesCS5D01G247600 chr5A 457074824 457086250 11426 False 2302.020000 5790 93.353800 130 8789 5 chr5A.!!$F3 8659
3 TraesCS5D01G247600 chr7D 382108678 382109335 657 True 1129.000000 1129 97.720000 192 846 1 chr7D.!!$R1 654
4 TraesCS5D01G247600 chr7D 626735562 626736219 657 True 1123.000000 1123 97.568000 192 846 1 chr7D.!!$R2 654
5 TraesCS5D01G247600 chr6D 458957010 458957667 657 False 1112.000000 1112 97.264000 192 846 1 chr6D.!!$F2 654
6 TraesCS5D01G247600 chr6D 108477837 108478494 657 True 1107.000000 1107 97.112000 192 846 1 chr6D.!!$R1 654
7 TraesCS5D01G247600 chr1B 668818680 668819337 657 True 1112.000000 1112 97.264000 192 846 1 chr1B.!!$R1 654
8 TraesCS5D01G247600 chrUn 264059424 264060081 657 True 1107.000000 1107 97.112000 192 846 1 chrUn.!!$R2 654
9 TraesCS5D01G247600 chrUn 266529357 266530014 657 True 1107.000000 1107 97.112000 192 846 1 chrUn.!!$R3 654
10 TraesCS5D01G247600 chr6B 151232883 151233540 657 True 1107.000000 1107 97.112000 192 846 1 chr6B.!!$R1 654
11 TraesCS5D01G247600 chr4D 123455703 123456360 657 False 1107.000000 1107 97.112000 192 846 1 chr4D.!!$F1 654
12 TraesCS5D01G247600 chr4B 86068246 86072679 4433 True 235.433333 416 82.913333 2145 6566 3 chr4B.!!$R1 4421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.034477 AATCCCGTAAAGCCACCTGG 60.034 55.000 0.00 0.0 38.53 4.45 F
123 124 0.179189 GCAGCTGCGCGTTTAAGATT 60.179 50.000 25.23 0.0 0.00 2.40 F
859 863 0.320073 CCGCACTCCCACGTAGAAAA 60.320 55.000 0.00 0.0 0.00 2.29 F
1731 1766 0.503117 GATCGTTTCGTGCGGCTATC 59.497 55.000 0.00 0.0 0.00 2.08 F
1898 1933 1.007387 CTGCCGGCAACTTGGTTTC 60.007 57.895 32.09 0.0 0.00 2.78 F
3726 4027 2.749776 TGTGTAGTGTGATGACCGTTG 58.250 47.619 0.00 0.0 0.00 4.10 F
3893 4387 2.804212 GCTGGATTTGTTTGCTTGTGCT 60.804 45.455 0.00 0.0 40.48 4.40 F
5353 6202 0.324943 CACCTGGATCGACCCTTGTT 59.675 55.000 0.00 0.0 38.00 2.83 F
6165 7462 1.571215 GGTGGCCAACGACTAAACCG 61.571 60.000 7.24 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1024 1028 0.309612 CCCCAACTTTTCCGACAACG 59.690 55.000 0.00 0.0 39.43 4.10 R
1089 1093 0.389391 CTGTCCTGTGTCGTCTGGTT 59.611 55.000 0.00 0.0 0.00 3.67 R
1863 1898 1.068194 GCAGTAGACAGTGAGCTCGTT 60.068 52.381 9.64 0.0 0.00 3.85 R
3334 3430 6.039382 ACCTTTCCAGTTTCACATCTAAACAC 59.961 38.462 0.00 0.0 38.92 3.32 R
3893 4387 0.969149 AGCAACAGACCTGATCGACA 59.031 50.000 3.76 0.0 0.00 4.35 R
5338 6187 0.901114 TCGGAACAAGGGTCGATCCA 60.901 55.000 19.03 0.0 38.11 3.41 R
5665 6962 4.023193 GTGTTTCCCTGACCAATAACAGTG 60.023 45.833 0.00 0.0 32.93 3.66 R
6287 7650 0.031585 TGGAACGACACACCTCTTCG 59.968 55.000 0.00 0.0 38.73 3.79 R
7826 9252 0.036952 CAGGAGATGACTGCGTTGGT 60.037 55.000 0.00 0.0 39.46 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.929376 CGCGTAATCCCGTAAAGCC 59.071 57.895 0.00 0.00 0.00 4.35
19 20 0.806884 CGCGTAATCCCGTAAAGCCA 60.807 55.000 0.00 0.00 0.00 4.75
20 21 0.654160 GCGTAATCCCGTAAAGCCAC 59.346 55.000 0.00 0.00 0.00 5.01
21 22 1.292992 CGTAATCCCGTAAAGCCACC 58.707 55.000 0.00 0.00 0.00 4.61
22 23 1.134610 CGTAATCCCGTAAAGCCACCT 60.135 52.381 0.00 0.00 0.00 4.00
23 24 2.285977 GTAATCCCGTAAAGCCACCTG 58.714 52.381 0.00 0.00 0.00 4.00
24 25 0.034477 AATCCCGTAAAGCCACCTGG 60.034 55.000 0.00 0.00 38.53 4.45
25 26 1.205460 ATCCCGTAAAGCCACCTGGT 61.205 55.000 0.00 0.00 37.57 4.00
26 27 1.376812 CCCGTAAAGCCACCTGGTC 60.377 63.158 0.00 0.00 37.57 4.02
27 28 1.373435 CCGTAAAGCCACCTGGTCA 59.627 57.895 0.00 0.00 37.57 4.02
28 29 0.673644 CCGTAAAGCCACCTGGTCAG 60.674 60.000 0.00 0.00 37.57 3.51
29 30 0.320374 CGTAAAGCCACCTGGTCAGA 59.680 55.000 0.00 0.00 37.57 3.27
30 31 1.270625 CGTAAAGCCACCTGGTCAGAA 60.271 52.381 0.00 0.00 37.57 3.02
31 32 2.427506 GTAAAGCCACCTGGTCAGAAG 58.572 52.381 0.00 0.00 37.57 2.85
32 33 0.538287 AAAGCCACCTGGTCAGAAGC 60.538 55.000 0.00 0.00 37.57 3.86
33 34 2.738213 AAGCCACCTGGTCAGAAGCG 62.738 60.000 0.00 0.00 37.57 4.68
34 35 2.046892 CCACCTGGTCAGAAGCGG 60.047 66.667 0.00 0.00 0.00 5.52
35 36 2.583441 CCACCTGGTCAGAAGCGGA 61.583 63.158 0.00 0.00 0.00 5.54
36 37 1.599047 CACCTGGTCAGAAGCGGAT 59.401 57.895 0.00 0.00 0.00 4.18
37 38 0.460987 CACCTGGTCAGAAGCGGATC 60.461 60.000 0.00 0.00 0.00 3.36
38 39 1.227089 CCTGGTCAGAAGCGGATCG 60.227 63.158 0.00 0.00 0.00 3.69
63 64 4.241555 GGGATCGCTCCACCGCAT 62.242 66.667 7.74 0.00 44.08 4.73
64 65 2.663188 GGATCGCTCCACCGCATC 60.663 66.667 0.00 0.00 41.64 3.91
65 66 3.032609 GATCGCTCCACCGCATCG 61.033 66.667 0.00 0.00 0.00 3.84
66 67 3.484742 GATCGCTCCACCGCATCGA 62.485 63.158 0.00 0.00 0.00 3.59
67 68 2.954020 GATCGCTCCACCGCATCGAA 62.954 60.000 0.00 0.00 32.74 3.71
68 69 3.554692 CGCTCCACCGCATCGAAC 61.555 66.667 0.00 0.00 0.00 3.95
69 70 3.554692 GCTCCACCGCATCGAACG 61.555 66.667 4.37 4.37 0.00 3.95
75 76 2.776072 CCGCATCGAACGGTTGAC 59.224 61.111 19.11 0.00 45.70 3.18
76 77 3.066645 CCGCATCGAACGGTTGACG 62.067 63.158 19.11 7.26 45.70 4.35
87 88 4.077188 GTTGACGTGCCTGCGCTC 62.077 66.667 9.73 0.00 35.36 5.03
102 103 2.933036 CTCGACGCGACGAACGAG 60.933 66.667 30.73 24.80 45.77 4.18
121 122 2.860293 GCAGCTGCGCGTTTAAGA 59.140 55.556 25.23 0.00 0.00 2.10
122 123 1.425428 GCAGCTGCGCGTTTAAGAT 59.575 52.632 25.23 0.00 0.00 2.40
123 124 0.179189 GCAGCTGCGCGTTTAAGATT 60.179 50.000 25.23 0.00 0.00 2.40
124 125 1.729149 GCAGCTGCGCGTTTAAGATTT 60.729 47.619 25.23 0.00 0.00 2.17
125 126 2.169179 CAGCTGCGCGTTTAAGATTTC 58.831 47.619 8.43 0.00 0.00 2.17
126 127 1.804151 AGCTGCGCGTTTAAGATTTCA 59.196 42.857 8.43 0.00 0.00 2.69
127 128 2.159653 AGCTGCGCGTTTAAGATTTCAG 60.160 45.455 8.43 3.14 0.00 3.02
128 129 2.774007 CTGCGCGTTTAAGATTTCAGG 58.226 47.619 8.43 0.00 0.00 3.86
129 130 1.135803 TGCGCGTTTAAGATTTCAGGC 60.136 47.619 8.43 0.00 0.00 4.85
130 131 1.135803 GCGCGTTTAAGATTTCAGGCA 60.136 47.619 8.43 0.00 0.00 4.75
131 132 2.667171 GCGCGTTTAAGATTTCAGGCAA 60.667 45.455 8.43 0.00 0.00 4.52
132 133 3.560503 CGCGTTTAAGATTTCAGGCAAA 58.439 40.909 0.00 0.00 0.00 3.68
133 134 3.978217 CGCGTTTAAGATTTCAGGCAAAA 59.022 39.130 0.00 0.00 0.00 2.44
134 135 4.442733 CGCGTTTAAGATTTCAGGCAAAAA 59.557 37.500 0.00 0.00 0.00 1.94
135 136 5.118510 CGCGTTTAAGATTTCAGGCAAAAAT 59.881 36.000 0.00 0.00 0.00 1.82
136 137 6.306837 CGCGTTTAAGATTTCAGGCAAAAATA 59.693 34.615 0.00 0.00 0.00 1.40
137 138 7.009174 CGCGTTTAAGATTTCAGGCAAAAATAT 59.991 33.333 0.00 0.00 0.00 1.28
138 139 9.296400 GCGTTTAAGATTTCAGGCAAAAATATA 57.704 29.630 0.00 0.00 0.00 0.86
141 142 9.515020 TTTAAGATTTCAGGCAAAAATATAGCG 57.485 29.630 0.00 0.00 0.00 4.26
142 143 6.942532 AGATTTCAGGCAAAAATATAGCGA 57.057 33.333 0.00 0.00 0.00 4.93
143 144 6.963796 AGATTTCAGGCAAAAATATAGCGAG 58.036 36.000 0.00 0.00 0.00 5.03
144 145 4.552166 TTCAGGCAAAAATATAGCGAGC 57.448 40.909 0.00 0.00 0.00 5.03
145 146 2.878406 TCAGGCAAAAATATAGCGAGCC 59.122 45.455 0.00 0.00 40.85 4.70
146 147 2.030805 CAGGCAAAAATATAGCGAGCCC 60.031 50.000 0.00 0.00 41.45 5.19
147 148 1.069227 GGCAAAAATATAGCGAGCCCG 60.069 52.381 0.00 0.00 34.71 6.13
148 149 1.871039 GCAAAAATATAGCGAGCCCGA 59.129 47.619 0.00 0.00 38.22 5.14
188 189 2.295909 GTGTGGTTGCCATGCTAAAAGA 59.704 45.455 0.00 0.00 35.28 2.52
396 398 0.618458 TAATGCACGGAAGAAGGGCT 59.382 50.000 0.00 0.00 0.00 5.19
469 471 3.199508 AGTCATTGAGTAGCTCTGCCAAT 59.800 43.478 0.00 0.00 0.00 3.16
490 492 5.961396 ATGCGGTTAGTATAAGTCGATCT 57.039 39.130 0.00 0.00 0.00 2.75
634 636 2.766828 AGTTCTATACACCTGCCAGGAC 59.233 50.000 19.90 1.90 37.67 3.85
706 708 5.877012 AGCTTTGTACTCAGTACATGATTGG 59.123 40.000 18.54 6.71 46.36 3.16
717 719 7.564793 TCAGTACATGATTGGTTTATAGCACT 58.435 34.615 0.00 0.00 31.12 4.40
743 745 6.661377 TGTAGCTTATGCAAACAAATTCCCTA 59.339 34.615 0.00 0.00 42.74 3.53
758 762 1.177401 CCCTAAGTGGCAGCTTTTCC 58.823 55.000 7.46 0.00 0.00 3.13
846 850 2.032681 GAAGACCTTGGCCGCACT 59.967 61.111 0.00 0.00 0.00 4.40
847 851 2.032681 AAGACCTTGGCCGCACTC 59.967 61.111 0.00 0.00 0.00 3.51
848 852 3.553095 AAGACCTTGGCCGCACTCC 62.553 63.158 0.00 0.00 0.00 3.85
855 859 4.814294 GGCCGCACTCCCACGTAG 62.814 72.222 0.00 0.00 0.00 3.51
856 860 3.755628 GCCGCACTCCCACGTAGA 61.756 66.667 0.00 0.00 0.00 2.59
857 861 2.967397 CCGCACTCCCACGTAGAA 59.033 61.111 0.00 0.00 0.00 2.10
858 862 1.290955 CCGCACTCCCACGTAGAAA 59.709 57.895 0.00 0.00 0.00 2.52
859 863 0.320073 CCGCACTCCCACGTAGAAAA 60.320 55.000 0.00 0.00 0.00 2.29
860 864 0.788391 CGCACTCCCACGTAGAAAAC 59.212 55.000 0.00 0.00 0.00 2.43
861 865 1.154197 GCACTCCCACGTAGAAAACC 58.846 55.000 0.00 0.00 0.00 3.27
862 866 1.541670 GCACTCCCACGTAGAAAACCA 60.542 52.381 0.00 0.00 0.00 3.67
863 867 2.841215 CACTCCCACGTAGAAAACCAA 58.159 47.619 0.00 0.00 0.00 3.67
864 868 2.806244 CACTCCCACGTAGAAAACCAAG 59.194 50.000 0.00 0.00 0.00 3.61
865 869 2.701951 ACTCCCACGTAGAAAACCAAGA 59.298 45.455 0.00 0.00 0.00 3.02
866 870 3.244112 ACTCCCACGTAGAAAACCAAGAG 60.244 47.826 0.00 0.00 0.00 2.85
867 871 1.804748 CCCACGTAGAAAACCAAGAGC 59.195 52.381 0.00 0.00 0.00 4.09
868 872 2.489971 CCACGTAGAAAACCAAGAGCA 58.510 47.619 0.00 0.00 0.00 4.26
869 873 2.480419 CCACGTAGAAAACCAAGAGCAG 59.520 50.000 0.00 0.00 0.00 4.24
870 874 3.131396 CACGTAGAAAACCAAGAGCAGT 58.869 45.455 0.00 0.00 0.00 4.40
871 875 3.059597 CACGTAGAAAACCAAGAGCAGTG 60.060 47.826 0.00 0.00 0.00 3.66
872 876 3.181469 ACGTAGAAAACCAAGAGCAGTGA 60.181 43.478 0.00 0.00 0.00 3.41
873 877 3.430218 CGTAGAAAACCAAGAGCAGTGAG 59.570 47.826 0.00 0.00 0.00 3.51
874 878 3.567478 AGAAAACCAAGAGCAGTGAGT 57.433 42.857 0.00 0.00 0.00 3.41
875 879 3.891049 AGAAAACCAAGAGCAGTGAGTT 58.109 40.909 0.00 0.00 0.00 3.01
876 880 5.036117 AGAAAACCAAGAGCAGTGAGTTA 57.964 39.130 0.00 0.00 0.00 2.24
877 881 4.816925 AGAAAACCAAGAGCAGTGAGTTAC 59.183 41.667 0.00 0.00 0.00 2.50
878 882 3.838244 AACCAAGAGCAGTGAGTTACA 57.162 42.857 0.00 0.00 0.00 2.41
879 883 3.838244 ACCAAGAGCAGTGAGTTACAA 57.162 42.857 0.00 0.00 0.00 2.41
880 884 4.150897 ACCAAGAGCAGTGAGTTACAAA 57.849 40.909 0.00 0.00 0.00 2.83
881 885 4.523083 ACCAAGAGCAGTGAGTTACAAAA 58.477 39.130 0.00 0.00 0.00 2.44
882 886 4.335594 ACCAAGAGCAGTGAGTTACAAAAC 59.664 41.667 0.00 0.00 35.72 2.43
883 887 4.261197 CCAAGAGCAGTGAGTTACAAAACC 60.261 45.833 0.00 0.00 36.15 3.27
884 888 4.150897 AGAGCAGTGAGTTACAAAACCA 57.849 40.909 0.00 0.00 36.15 3.67
885 889 4.523083 AGAGCAGTGAGTTACAAAACCAA 58.477 39.130 0.00 0.00 36.15 3.67
886 890 4.576463 AGAGCAGTGAGTTACAAAACCAAG 59.424 41.667 0.00 0.00 36.15 3.61
887 891 4.523083 AGCAGTGAGTTACAAAACCAAGA 58.477 39.130 0.00 0.00 36.15 3.02
888 892 4.947388 AGCAGTGAGTTACAAAACCAAGAA 59.053 37.500 0.00 0.00 36.15 2.52
889 893 5.034797 GCAGTGAGTTACAAAACCAAGAAC 58.965 41.667 0.00 0.00 36.15 3.01
890 894 5.392595 GCAGTGAGTTACAAAACCAAGAACA 60.393 40.000 0.00 0.00 36.15 3.18
891 895 6.258160 CAGTGAGTTACAAAACCAAGAACAG 58.742 40.000 0.00 0.00 36.15 3.16
892 896 5.944007 AGTGAGTTACAAAACCAAGAACAGT 59.056 36.000 0.00 0.00 36.15 3.55
893 897 6.433093 AGTGAGTTACAAAACCAAGAACAGTT 59.567 34.615 0.00 0.00 36.15 3.16
894 898 7.608761 AGTGAGTTACAAAACCAAGAACAGTTA 59.391 33.333 0.00 0.00 36.15 2.24
895 899 7.908601 GTGAGTTACAAAACCAAGAACAGTTAG 59.091 37.037 0.00 0.00 36.15 2.34
896 900 7.825270 TGAGTTACAAAACCAAGAACAGTTAGA 59.175 33.333 0.00 0.00 36.15 2.10
897 901 8.570068 AGTTACAAAACCAAGAACAGTTAGAA 57.430 30.769 0.00 0.00 36.15 2.10
898 902 9.185680 AGTTACAAAACCAAGAACAGTTAGAAT 57.814 29.630 0.00 0.00 36.15 2.40
899 903 9.447040 GTTACAAAACCAAGAACAGTTAGAATC 57.553 33.333 0.00 0.00 0.00 2.52
900 904 6.725246 ACAAAACCAAGAACAGTTAGAATCG 58.275 36.000 0.00 0.00 0.00 3.34
901 905 5.358298 AAACCAAGAACAGTTAGAATCGC 57.642 39.130 0.00 0.00 0.00 4.58
902 906 2.993899 ACCAAGAACAGTTAGAATCGCG 59.006 45.455 0.00 0.00 0.00 5.87
903 907 2.993899 CCAAGAACAGTTAGAATCGCGT 59.006 45.455 5.77 0.00 0.00 6.01
904 908 4.171005 CCAAGAACAGTTAGAATCGCGTA 58.829 43.478 5.77 0.00 0.00 4.42
905 909 4.265556 CCAAGAACAGTTAGAATCGCGTAG 59.734 45.833 5.77 0.00 0.00 3.51
918 922 2.125912 CGTAGCTGCGTGCCTCTT 60.126 61.111 16.66 0.00 44.23 2.85
919 923 1.738099 CGTAGCTGCGTGCCTCTTT 60.738 57.895 16.66 0.00 44.23 2.52
920 924 1.291877 CGTAGCTGCGTGCCTCTTTT 61.292 55.000 16.66 0.00 44.23 2.27
921 925 0.875059 GTAGCTGCGTGCCTCTTTTT 59.125 50.000 0.00 0.00 44.23 1.94
978 982 1.526686 GTTTTGGTTCCCGGACGGT 60.527 57.895 0.73 0.00 0.00 4.83
1024 1028 0.733223 GAGTGAAACCGACTCTCGCC 60.733 60.000 0.00 0.00 38.82 5.54
1089 1093 1.525077 GCCGGTGTCCAGAACAACA 60.525 57.895 1.90 0.00 46.62 3.33
1090 1094 1.098712 GCCGGTGTCCAGAACAACAA 61.099 55.000 1.90 0.00 46.62 2.83
1091 1095 0.661020 CCGGTGTCCAGAACAACAAC 59.339 55.000 0.00 0.00 46.62 3.32
1092 1096 0.661020 CGGTGTCCAGAACAACAACC 59.339 55.000 0.00 0.00 46.62 3.77
1095 1099 2.639065 GTGTCCAGAACAACAACCAGA 58.361 47.619 0.00 0.00 40.31 3.86
1372 1401 2.177594 CTGCCCTCCAGTTTCTCGCT 62.178 60.000 0.00 0.00 36.79 4.93
1471 1502 2.032620 GAGGCCGTTCTTGGAGATCTA 58.967 52.381 0.00 0.00 0.00 1.98
1509 1540 3.120683 CGTGTTCAGCTGCGAGAATTTTA 60.121 43.478 9.47 0.00 0.00 1.52
1513 1544 3.674997 TCAGCTGCGAGAATTTTAGGTT 58.325 40.909 9.47 0.00 0.00 3.50
1527 1558 2.107041 TAGGTTGTGTCTGGTGGGCG 62.107 60.000 0.00 0.00 0.00 6.13
1562 1594 5.682862 GCAATTGCGATCTCGAATATTTTGT 59.317 36.000 15.87 0.00 43.02 2.83
1576 1608 6.074569 CGAATATTTTGTGGTGGTTTTGTCAC 60.075 38.462 0.00 0.00 34.61 3.67
1578 1610 3.305398 TTTGTGGTGGTTTTGTCACAC 57.695 42.857 0.00 0.00 39.46 3.82
1579 1611 2.208132 TGTGGTGGTTTTGTCACACT 57.792 45.000 0.00 0.00 35.52 3.55
1582 1614 3.055021 TGTGGTGGTTTTGTCACACTAGA 60.055 43.478 0.00 0.00 35.52 2.43
1612 1647 1.339631 CGAAATCAACCCTGGCCACTA 60.340 52.381 0.00 0.00 0.00 2.74
1613 1648 2.802719 GAAATCAACCCTGGCCACTAA 58.197 47.619 0.00 0.00 0.00 2.24
1656 1691 2.937873 GCTACCTGGGTGCAATTTCGTA 60.938 50.000 2.07 0.00 0.00 3.43
1731 1766 0.503117 GATCGTTTCGTGCGGCTATC 59.497 55.000 0.00 0.00 0.00 2.08
1863 1898 5.508567 TGATCAGGCTGAATCATTGGTTAA 58.491 37.500 22.84 0.00 0.00 2.01
1898 1933 1.007387 CTGCCGGCAACTTGGTTTC 60.007 57.895 32.09 0.00 0.00 2.78
1924 1959 7.224297 GGTGAAATAGGATTGCTAGGAATGTA 58.776 38.462 14.86 6.20 0.00 2.29
1995 2030 4.996788 ATTTGAGCAGATTGGATTGACC 57.003 40.909 0.00 0.00 39.54 4.02
2010 2045 4.262894 GGATTGACCTGTCTTTCTGTGGTA 60.263 45.833 0.00 0.00 35.41 3.25
2013 2048 3.321111 TGACCTGTCTTTCTGTGGTAGTC 59.679 47.826 0.00 0.00 0.00 2.59
2017 2052 4.039245 CCTGTCTTTCTGTGGTAGTCTTCA 59.961 45.833 0.00 0.00 0.00 3.02
2041 2077 5.409643 TCTATTTTCGCTTGCTTATGCTC 57.590 39.130 1.96 0.00 40.48 4.26
2709 2745 9.612620 CTGTCCTTAAATGTTTTGTTCTGTATC 57.387 33.333 0.00 0.00 0.00 2.24
2991 3027 9.689976 ACTCAGTTAAGAATCGATATCATTCAG 57.310 33.333 20.43 13.50 33.34 3.02
3051 3087 5.107143 CCAAATTTTTAATGTGGCAAGTCCG 60.107 40.000 0.00 0.00 37.80 4.79
3334 3430 5.371115 ACTATCACAATTTTGGGTTCACG 57.629 39.130 0.00 0.00 32.15 4.35
3726 4027 2.749776 TGTGTAGTGTGATGACCGTTG 58.250 47.619 0.00 0.00 0.00 4.10
3893 4387 2.804212 GCTGGATTTGTTTGCTTGTGCT 60.804 45.455 0.00 0.00 40.48 4.40
3998 4492 7.546250 ACTGTTTCCTAGCATATACAGCTAT 57.454 36.000 8.66 0.00 43.08 2.97
4238 4741 6.342111 CAAAAGAGAATGGAGAGGGTACTAC 58.658 44.000 0.00 0.00 0.00 2.73
4239 4742 5.475398 AAGAGAATGGAGAGGGTACTACT 57.525 43.478 0.00 0.00 0.00 2.57
4240 4743 6.593759 AAGAGAATGGAGAGGGTACTACTA 57.406 41.667 0.00 0.00 0.00 1.82
4242 4745 6.607019 AGAGAATGGAGAGGGTACTACTAAG 58.393 44.000 0.00 0.00 0.00 2.18
4243 4746 6.160814 AGAGAATGGAGAGGGTACTACTAAGT 59.839 42.308 0.00 0.00 39.91 2.24
4244 4747 7.350389 AGAGAATGGAGAGGGTACTACTAAGTA 59.650 40.741 0.00 0.00 37.15 2.24
4246 4749 7.945664 AGAATGGAGAGGGTACTACTAAGTATG 59.054 40.741 0.00 0.00 40.30 2.39
4247 4750 6.836714 TGGAGAGGGTACTACTAAGTATGA 57.163 41.667 0.00 0.00 40.30 2.15
4249 4752 6.183361 TGGAGAGGGTACTACTAAGTATGAGG 60.183 46.154 0.00 0.00 40.30 3.86
4292 4798 3.076621 AGAAATCAGCTTGTCGAATGCA 58.923 40.909 8.00 0.00 0.00 3.96
4745 5251 5.958380 TGATAGACAGTCAGTTATGAAGGGT 59.042 40.000 2.66 0.00 37.14 4.34
4796 5495 8.655378 GCACGTGGCATTTAGTTATTTATATC 57.345 34.615 18.88 0.00 43.97 1.63
5311 6160 3.815401 GTGAAGCTTTCAAGGTAGCTCAA 59.185 43.478 0.00 0.00 46.53 3.02
5338 6187 0.466922 GCTGCATATCAAGGCCACCT 60.467 55.000 5.01 0.00 33.87 4.00
5353 6202 0.324943 CACCTGGATCGACCCTTGTT 59.675 55.000 0.00 0.00 38.00 2.83
5665 6962 2.829741 AAAGTCCTCTGTCTGCAGAC 57.170 50.000 35.04 35.04 45.94 3.51
6165 7462 1.571215 GGTGGCCAACGACTAAACCG 61.571 60.000 7.24 0.00 0.00 4.44
6279 7642 3.979101 AGAAAGAAGAGGAGGCAAGAG 57.021 47.619 0.00 0.00 0.00 2.85
6280 7643 3.515562 AGAAAGAAGAGGAGGCAAGAGA 58.484 45.455 0.00 0.00 0.00 3.10
6281 7644 3.260632 AGAAAGAAGAGGAGGCAAGAGAC 59.739 47.826 0.00 0.00 0.00 3.36
6282 7645 2.317371 AGAAGAGGAGGCAAGAGACA 57.683 50.000 0.00 0.00 0.00 3.41
6283 7646 2.831565 AGAAGAGGAGGCAAGAGACAT 58.168 47.619 0.00 0.00 0.00 3.06
6284 7647 2.500910 AGAAGAGGAGGCAAGAGACATG 59.499 50.000 0.00 0.00 0.00 3.21
6285 7648 1.949799 AGAGGAGGCAAGAGACATGT 58.050 50.000 0.00 0.00 0.00 3.21
6286 7649 1.554160 AGAGGAGGCAAGAGACATGTG 59.446 52.381 1.15 0.00 0.00 3.21
6287 7650 0.035630 AGGAGGCAAGAGACATGTGC 60.036 55.000 1.15 0.00 37.55 4.57
6288 7651 1.364626 GGAGGCAAGAGACATGTGCG 61.365 60.000 1.15 0.00 39.22 5.34
6289 7652 0.390340 GAGGCAAGAGACATGTGCGA 60.390 55.000 1.15 0.00 39.22 5.10
6290 7653 0.035317 AGGCAAGAGACATGTGCGAA 59.965 50.000 1.15 0.00 39.22 4.70
6291 7654 0.445436 GGCAAGAGACATGTGCGAAG 59.555 55.000 1.15 0.00 39.22 3.79
6292 7655 1.432514 GCAAGAGACATGTGCGAAGA 58.567 50.000 1.15 0.00 0.00 2.87
6293 7656 1.392853 GCAAGAGACATGTGCGAAGAG 59.607 52.381 1.15 0.00 0.00 2.85
6294 7657 1.998315 CAAGAGACATGTGCGAAGAGG 59.002 52.381 1.15 0.00 0.00 3.69
6295 7658 1.261480 AGAGACATGTGCGAAGAGGT 58.739 50.000 1.15 0.00 0.00 3.85
6296 7659 1.067283 AGAGACATGTGCGAAGAGGTG 60.067 52.381 1.15 0.00 0.00 4.00
6297 7660 0.681733 AGACATGTGCGAAGAGGTGT 59.318 50.000 1.15 0.00 0.00 4.16
6298 7661 0.792640 GACATGTGCGAAGAGGTGTG 59.207 55.000 1.15 0.00 0.00 3.82
6299 7662 0.106708 ACATGTGCGAAGAGGTGTGT 59.893 50.000 0.00 0.00 0.00 3.72
6300 7663 0.792640 CATGTGCGAAGAGGTGTGTC 59.207 55.000 0.00 0.00 0.00 3.67
6301 7664 0.667487 ATGTGCGAAGAGGTGTGTCG 60.667 55.000 0.00 0.00 37.82 4.35
6302 7665 1.299926 GTGCGAAGAGGTGTGTCGT 60.300 57.895 0.00 0.00 37.12 4.34
6303 7666 0.874607 GTGCGAAGAGGTGTGTCGTT 60.875 55.000 0.00 0.00 37.12 3.85
6304 7667 0.596600 TGCGAAGAGGTGTGTCGTTC 60.597 55.000 0.00 0.00 37.12 3.95
6305 7668 1.282930 GCGAAGAGGTGTGTCGTTCC 61.283 60.000 0.00 0.00 37.12 3.62
6306 7669 0.031585 CGAAGAGGTGTGTCGTTCCA 59.968 55.000 0.00 0.00 0.00 3.53
6307 7670 1.336887 CGAAGAGGTGTGTCGTTCCAT 60.337 52.381 0.00 0.00 0.00 3.41
6308 7671 2.338500 GAAGAGGTGTGTCGTTCCATC 58.662 52.381 0.00 0.00 0.00 3.51
6309 7672 1.633774 AGAGGTGTGTCGTTCCATCT 58.366 50.000 0.00 0.00 0.00 2.90
6310 7673 2.803956 AGAGGTGTGTCGTTCCATCTA 58.196 47.619 0.00 0.00 0.00 1.98
6311 7674 2.755655 AGAGGTGTGTCGTTCCATCTAG 59.244 50.000 0.00 0.00 0.00 2.43
6312 7675 2.492484 GAGGTGTGTCGTTCCATCTAGT 59.508 50.000 0.00 0.00 0.00 2.57
6313 7676 2.231478 AGGTGTGTCGTTCCATCTAGTG 59.769 50.000 0.00 0.00 0.00 2.74
6314 7677 2.230508 GGTGTGTCGTTCCATCTAGTGA 59.769 50.000 0.00 0.00 0.00 3.41
6315 7678 3.502920 GTGTGTCGTTCCATCTAGTGAG 58.497 50.000 0.00 0.00 0.00 3.51
6316 7679 2.094700 TGTGTCGTTCCATCTAGTGAGC 60.095 50.000 0.00 0.00 0.00 4.26
6317 7680 2.094700 GTGTCGTTCCATCTAGTGAGCA 60.095 50.000 0.00 0.00 0.00 4.26
6318 7681 2.760650 TGTCGTTCCATCTAGTGAGCAT 59.239 45.455 0.00 0.00 0.00 3.79
6319 7682 3.951680 TGTCGTTCCATCTAGTGAGCATA 59.048 43.478 0.00 0.00 0.00 3.14
6320 7683 4.584743 TGTCGTTCCATCTAGTGAGCATAT 59.415 41.667 0.00 0.00 0.00 1.78
6321 7684 5.069119 TGTCGTTCCATCTAGTGAGCATATT 59.931 40.000 0.00 0.00 0.00 1.28
6322 7685 6.264518 TGTCGTTCCATCTAGTGAGCATATTA 59.735 38.462 0.00 0.00 0.00 0.98
6323 7686 6.804295 GTCGTTCCATCTAGTGAGCATATTAG 59.196 42.308 0.00 0.00 0.00 1.73
6324 7687 6.490381 TCGTTCCATCTAGTGAGCATATTAGT 59.510 38.462 0.00 0.00 0.00 2.24
6325 7688 7.014326 TCGTTCCATCTAGTGAGCATATTAGTT 59.986 37.037 0.00 0.00 0.00 2.24
6326 7689 7.115520 CGTTCCATCTAGTGAGCATATTAGTTG 59.884 40.741 0.00 0.00 0.00 3.16
6327 7690 7.839680 TCCATCTAGTGAGCATATTAGTTGA 57.160 36.000 0.00 0.00 0.00 3.18
6328 7691 8.427902 TCCATCTAGTGAGCATATTAGTTGAT 57.572 34.615 0.00 0.00 0.00 2.57
6329 7692 8.874156 TCCATCTAGTGAGCATATTAGTTGATT 58.126 33.333 0.00 0.00 0.00 2.57
6330 7693 9.499479 CCATCTAGTGAGCATATTAGTTGATTT 57.501 33.333 0.00 0.00 0.00 2.17
6333 7696 8.830580 TCTAGTGAGCATATTAGTTGATTTTGC 58.169 33.333 0.00 0.00 0.00 3.68
6334 7697 7.636150 AGTGAGCATATTAGTTGATTTTGCT 57.364 32.000 0.00 0.00 0.00 3.91
6335 7698 7.478322 AGTGAGCATATTAGTTGATTTTGCTG 58.522 34.615 0.00 0.00 0.00 4.41
6336 7699 7.337689 AGTGAGCATATTAGTTGATTTTGCTGA 59.662 33.333 0.00 0.00 0.00 4.26
6337 7700 8.133627 GTGAGCATATTAGTTGATTTTGCTGAT 58.866 33.333 0.00 0.00 0.00 2.90
6338 7701 9.341078 TGAGCATATTAGTTGATTTTGCTGATA 57.659 29.630 0.00 0.00 0.00 2.15
6346 7709 9.844790 TTAGTTGATTTTGCTGATATGAACAAG 57.155 29.630 0.00 0.00 0.00 3.16
6347 7710 6.810182 AGTTGATTTTGCTGATATGAACAAGC 59.190 34.615 0.00 0.00 0.00 4.01
6348 7711 6.270156 TGATTTTGCTGATATGAACAAGCA 57.730 33.333 0.00 0.00 0.00 3.91
6349 7712 6.689554 TGATTTTGCTGATATGAACAAGCAA 58.310 32.000 4.91 4.91 39.96 3.91
6653 8016 6.579666 TTGAATGCATTTCTTACTTCTGCT 57.420 33.333 14.33 0.00 35.23 4.24
6696 8059 3.077359 AGTATTGTTCAGCACTTGAGCC 58.923 45.455 0.00 0.00 36.30 4.70
6697 8060 2.283145 ATTGTTCAGCACTTGAGCCT 57.717 45.000 0.00 0.00 36.30 4.58
7005 8368 0.036875 AGGGTTCTGGCCTTTCTTCG 59.963 55.000 3.32 0.00 0.00 3.79
7034 8397 8.538409 AACAATGCTACAAAGATGGAAATTTC 57.462 30.769 9.83 9.83 0.00 2.17
7604 8981 8.846943 TCTTCTGCACTTGTGATTTTATTAGA 57.153 30.769 4.79 0.00 0.00 2.10
7605 8982 8.939929 TCTTCTGCACTTGTGATTTTATTAGAG 58.060 33.333 4.79 0.00 0.00 2.43
7684 9105 2.682856 GCAAAGCTAAATCCATCCGTGA 59.317 45.455 0.00 0.00 0.00 4.35
7698 9119 5.775195 TCCATCCGTGACATATAACTCTGAT 59.225 40.000 0.00 0.00 0.00 2.90
7802 9228 5.163405 CGGTCCAATAGGGGATATATGACTG 60.163 48.000 0.00 0.00 39.62 3.51
7806 9232 5.045651 CCAATAGGGGATATATGACTGTGCA 60.046 44.000 0.00 0.00 0.00 4.57
7826 9252 3.058016 GCAGAGAGCAATTTTGTGTAGCA 60.058 43.478 0.00 0.00 44.79 3.49
7827 9253 4.470462 CAGAGAGCAATTTTGTGTAGCAC 58.530 43.478 0.00 0.00 34.56 4.40
7831 9260 3.716601 AGCAATTTTGTGTAGCACCAAC 58.283 40.909 0.00 0.00 32.73 3.77
7835 9264 0.660488 TTTGTGTAGCACCAACGCAG 59.340 50.000 0.00 0.00 38.48 5.18
7843 9272 1.639298 GCACCAACGCAGTCATCTCC 61.639 60.000 0.00 0.00 45.00 3.71
7873 9302 3.074412 ACAGTAAAGAGGCATTGTTCGG 58.926 45.455 0.00 0.00 0.00 4.30
7882 9311 1.394697 GCATTGTTCGGTCGTGTTTG 58.605 50.000 0.00 0.00 0.00 2.93
7925 9354 2.680841 TGTGTTAGATGGGTTTATGCGC 59.319 45.455 0.00 0.00 0.00 6.09
7926 9355 2.943033 GTGTTAGATGGGTTTATGCGCT 59.057 45.455 9.73 0.00 0.00 5.92
7928 9357 3.625764 TGTTAGATGGGTTTATGCGCTTC 59.374 43.478 9.73 0.00 0.00 3.86
7929 9358 1.299541 AGATGGGTTTATGCGCTTCG 58.700 50.000 9.73 0.00 33.05 3.79
7931 9360 0.393808 ATGGGTTTATGCGCTTCGGT 60.394 50.000 9.73 0.00 0.00 4.69
7933 9362 1.338864 TGGGTTTATGCGCTTCGGTTA 60.339 47.619 9.73 0.00 0.00 2.85
7934 9363 1.944709 GGGTTTATGCGCTTCGGTTAT 59.055 47.619 9.73 0.00 0.00 1.89
7936 9365 2.610374 GGTTTATGCGCTTCGGTTATCA 59.390 45.455 9.73 0.00 0.00 2.15
7955 9384 3.449632 TCAAAAAGTGTAAAAAGGCGCC 58.550 40.909 21.89 21.89 0.00 6.53
7956 9385 3.119101 TCAAAAAGTGTAAAAAGGCGCCA 60.119 39.130 31.54 3.61 0.00 5.69
7957 9386 3.528597 AAAAGTGTAAAAAGGCGCCAA 57.471 38.095 31.54 5.16 0.00 4.52
7958 9387 2.793278 AAGTGTAAAAAGGCGCCAAG 57.207 45.000 31.54 0.00 0.00 3.61
7959 9388 1.687563 AGTGTAAAAAGGCGCCAAGT 58.312 45.000 31.54 10.81 0.00 3.16
7960 9389 2.853705 AGTGTAAAAAGGCGCCAAGTA 58.146 42.857 31.54 12.17 0.00 2.24
7961 9390 3.215975 AGTGTAAAAAGGCGCCAAGTAA 58.784 40.909 31.54 8.10 0.00 2.24
7962 9391 3.633065 AGTGTAAAAAGGCGCCAAGTAAA 59.367 39.130 31.54 7.23 0.00 2.01
7963 9392 3.732219 GTGTAAAAAGGCGCCAAGTAAAC 59.268 43.478 31.54 18.85 0.00 2.01
7964 9393 3.633065 TGTAAAAAGGCGCCAAGTAAACT 59.367 39.130 31.54 0.76 0.00 2.66
7965 9394 2.793278 AAAAGGCGCCAAGTAAACTG 57.207 45.000 31.54 0.00 0.00 3.16
7966 9395 1.687563 AAAGGCGCCAAGTAAACTGT 58.312 45.000 31.54 0.00 0.00 3.55
7967 9396 1.235724 AAGGCGCCAAGTAAACTGTC 58.764 50.000 31.54 0.00 0.00 3.51
7968 9397 0.107831 AGGCGCCAAGTAAACTGTCA 59.892 50.000 31.54 0.00 0.00 3.58
7969 9398 1.165270 GGCGCCAAGTAAACTGTCAT 58.835 50.000 24.80 0.00 0.00 3.06
7970 9399 1.539827 GGCGCCAAGTAAACTGTCATT 59.460 47.619 24.80 0.00 0.00 2.57
7971 9400 2.030274 GGCGCCAAGTAAACTGTCATTT 60.030 45.455 24.80 0.00 0.00 2.32
7972 9401 3.234386 GCGCCAAGTAAACTGTCATTTC 58.766 45.455 0.00 0.00 0.00 2.17
7973 9402 3.058224 GCGCCAAGTAAACTGTCATTTCT 60.058 43.478 0.00 0.00 0.00 2.52
7974 9403 4.466828 CGCCAAGTAAACTGTCATTTCTG 58.533 43.478 0.00 0.00 0.00 3.02
7975 9404 4.024048 CGCCAAGTAAACTGTCATTTCTGT 60.024 41.667 0.00 0.00 0.00 3.41
7976 9405 5.505654 CGCCAAGTAAACTGTCATTTCTGTT 60.506 40.000 0.00 0.00 0.00 3.16
7977 9406 5.687285 GCCAAGTAAACTGTCATTTCTGTTG 59.313 40.000 0.00 0.00 31.74 3.33
7978 9407 6.459573 GCCAAGTAAACTGTCATTTCTGTTGA 60.460 38.462 0.00 0.00 31.74 3.18
7979 9408 6.912591 CCAAGTAAACTGTCATTTCTGTTGAC 59.087 38.462 0.00 0.00 43.04 3.18
7980 9409 6.619801 AGTAAACTGTCATTTCTGTTGACC 57.380 37.500 1.73 0.00 42.25 4.02
7981 9410 6.119536 AGTAAACTGTCATTTCTGTTGACCA 58.880 36.000 1.73 0.00 42.25 4.02
7982 9411 5.913137 AAACTGTCATTTCTGTTGACCAA 57.087 34.783 1.73 0.00 42.25 3.67
7983 9412 5.505173 AACTGTCATTTCTGTTGACCAAG 57.495 39.130 1.73 0.00 42.25 3.61
7984 9413 4.526970 ACTGTCATTTCTGTTGACCAAGT 58.473 39.130 1.73 0.00 42.25 3.16
7985 9414 5.680619 ACTGTCATTTCTGTTGACCAAGTA 58.319 37.500 1.73 0.00 42.25 2.24
7986 9415 6.119536 ACTGTCATTTCTGTTGACCAAGTAA 58.880 36.000 1.73 0.00 42.25 2.24
7987 9416 6.601613 ACTGTCATTTCTGTTGACCAAGTAAA 59.398 34.615 1.73 0.00 42.25 2.01
7988 9417 6.791303 TGTCATTTCTGTTGACCAAGTAAAC 58.209 36.000 1.73 0.00 42.25 2.01
7989 9418 6.601613 TGTCATTTCTGTTGACCAAGTAAACT 59.398 34.615 1.73 0.00 42.25 2.66
7990 9419 6.912591 GTCATTTCTGTTGACCAAGTAAACTG 59.087 38.462 0.00 0.00 38.00 3.16
7991 9420 5.828299 TTTCTGTTGACCAAGTAAACTGG 57.172 39.130 3.00 0.00 30.14 4.00
7992 9421 4.497291 TCTGTTGACCAAGTAAACTGGT 57.503 40.909 0.00 0.00 38.87 4.00
7999 9428 5.419760 GACCAAGTAAACTGGTCTGTTTC 57.580 43.478 13.53 3.35 46.22 2.78
8006 9435 5.701290 AGTAAACTGGTCTGTTTCATGCTAC 59.299 40.000 8.79 2.79 40.23 3.58
8012 12172 3.437049 GGTCTGTTTCATGCTACCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
8020 12180 3.008923 TCATGCTACCTTGTCAACCATGA 59.991 43.478 0.00 0.00 36.30 3.07
8030 12190 1.820519 GTCAACCATGATGTGCCATGT 59.179 47.619 0.00 0.00 41.65 3.21
8042 12202 2.819019 TGTGCCATGTCAGTTTGGTATG 59.181 45.455 0.00 0.00 35.34 2.39
8046 12206 3.119849 GCCATGTCAGTTTGGTATGTGTC 60.120 47.826 0.00 0.00 35.34 3.67
8047 12207 3.125146 CCATGTCAGTTTGGTATGTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
8048 12208 3.462483 TGTCAGTTTGGTATGTGTCGT 57.538 42.857 0.00 0.00 0.00 4.34
8049 12209 4.587584 TGTCAGTTTGGTATGTGTCGTA 57.412 40.909 0.00 0.00 0.00 3.43
8050 12210 4.946445 TGTCAGTTTGGTATGTGTCGTAA 58.054 39.130 0.00 0.00 0.00 3.18
8051 12211 5.358090 TGTCAGTTTGGTATGTGTCGTAAA 58.642 37.500 0.00 0.00 0.00 2.01
8052 12212 5.234757 TGTCAGTTTGGTATGTGTCGTAAAC 59.765 40.000 0.00 0.00 0.00 2.01
8055 12370 6.018588 TCAGTTTGGTATGTGTCGTAAACTTG 60.019 38.462 0.00 0.00 36.54 3.16
8061 12376 2.891112 TGTGTCGTAAACTTGTCCGTT 58.109 42.857 0.00 0.00 0.00 4.44
8063 12378 3.306703 TGTGTCGTAAACTTGTCCGTTTC 59.693 43.478 0.00 0.00 38.08 2.78
8069 12384 3.481112 AAACTTGTCCGTTTCACACAC 57.519 42.857 0.00 0.00 31.87 3.82
8074 12389 4.659874 CCGTTTCACACACGCGCC 62.660 66.667 5.73 0.00 36.27 6.53
8088 12403 2.433334 GCGCCGGCATTTTCGTTTC 61.433 57.895 28.98 0.00 39.62 2.78
8090 12405 1.584495 GCCGGCATTTTCGTTTCCT 59.416 52.632 24.80 0.00 0.00 3.36
8092 12407 1.696988 CCGGCATTTTCGTTTCCTTG 58.303 50.000 0.00 0.00 0.00 3.61
8093 12408 1.000717 CCGGCATTTTCGTTTCCTTGT 60.001 47.619 0.00 0.00 0.00 3.16
8094 12409 2.050691 CGGCATTTTCGTTTCCTTGTG 58.949 47.619 0.00 0.00 0.00 3.33
8098 12413 4.298332 GCATTTTCGTTTCCTTGTGTCAT 58.702 39.130 0.00 0.00 0.00 3.06
8099 12414 4.148696 GCATTTTCGTTTCCTTGTGTCATG 59.851 41.667 0.00 0.00 0.00 3.07
8100 12415 5.518812 CATTTTCGTTTCCTTGTGTCATGA 58.481 37.500 0.00 0.00 0.00 3.07
8152 12851 1.514087 GTATCTGAACCCACGCCGA 59.486 57.895 0.00 0.00 0.00 5.54
8163 12862 3.645975 ACGCCGAGCAAAACGTGG 61.646 61.111 0.00 0.00 37.37 4.94
8231 12930 2.276680 GAAAATCGCGCGGACAGC 60.277 61.111 31.69 13.40 43.95 4.40
8259 12962 4.308526 GGTACGGACAGACGGAGA 57.691 61.111 0.00 0.00 38.39 3.71
8260 12963 2.791170 GGTACGGACAGACGGAGAT 58.209 57.895 0.00 0.00 38.39 2.75
8261 12964 0.662085 GGTACGGACAGACGGAGATC 59.338 60.000 0.00 0.00 38.39 2.75
8262 12965 1.666054 GTACGGACAGACGGAGATCT 58.334 55.000 0.00 0.00 38.39 2.75
8264 12967 1.096416 ACGGACAGACGGAGATCTTC 58.904 55.000 0.00 0.00 38.39 2.87
8265 12968 1.095600 CGGACAGACGGAGATCTTCA 58.904 55.000 0.96 0.00 0.00 3.02
8268 12971 1.469308 GACAGACGGAGATCTTCACGT 59.531 52.381 17.25 17.25 42.88 4.49
8269 12972 2.676839 GACAGACGGAGATCTTCACGTA 59.323 50.000 17.24 0.00 39.95 3.57
8273 12976 4.272748 CAGACGGAGATCTTCACGTACATA 59.727 45.833 17.24 0.00 39.95 2.29
8275 12978 5.049336 AGACGGAGATCTTCACGTACATATG 60.049 44.000 17.24 0.00 39.95 1.78
8276 12979 4.579340 ACGGAGATCTTCACGTACATATGT 59.421 41.667 13.93 13.93 37.85 2.29
8277 12980 5.147865 CGGAGATCTTCACGTACATATGTC 58.852 45.833 12.68 3.54 0.00 3.06
8278 12981 5.049336 CGGAGATCTTCACGTACATATGTCT 60.049 44.000 12.68 0.00 0.00 3.41
8279 12982 6.375377 GGAGATCTTCACGTACATATGTCTC 58.625 44.000 12.68 8.30 0.00 3.36
8280 12983 6.320494 AGATCTTCACGTACATATGTCTCC 57.680 41.667 12.68 0.85 0.00 3.71
8281 12984 4.913335 TCTTCACGTACATATGTCTCCC 57.087 45.455 12.68 0.00 0.00 4.30
8282 12985 4.533815 TCTTCACGTACATATGTCTCCCT 58.466 43.478 12.68 0.00 0.00 4.20
8283 12986 4.579340 TCTTCACGTACATATGTCTCCCTC 59.421 45.833 12.68 0.00 0.00 4.30
8284 12987 2.876550 TCACGTACATATGTCTCCCTCG 59.123 50.000 12.68 10.82 0.00 4.63
8285 12988 2.031069 CACGTACATATGTCTCCCTCGG 60.031 54.545 12.68 0.00 0.00 4.63
8289 13019 1.244816 CATATGTCTCCCTCGGCGTA 58.755 55.000 6.85 0.00 0.00 4.42
8291 13021 1.162181 TATGTCTCCCTCGGCGTACG 61.162 60.000 11.84 11.84 46.11 3.67
8303 13033 0.024619 GGCGTACGCGATCTTTTGAC 59.975 55.000 31.78 11.77 43.06 3.18
8313 13043 3.720051 GCGATCTTTTGACGTAACGTTCC 60.720 47.826 2.82 0.00 41.37 3.62
8315 13045 2.126467 TCTTTTGACGTAACGTTCCCG 58.874 47.619 2.82 11.51 41.37 5.14
8330 13060 2.443887 TCCCGACGTGTCCTTTTTAG 57.556 50.000 0.00 0.00 0.00 1.85
8340 13070 3.872771 GTGTCCTTTTTAGAACGTGACCA 59.127 43.478 0.00 0.00 0.00 4.02
8341 13071 4.514066 GTGTCCTTTTTAGAACGTGACCAT 59.486 41.667 0.00 0.00 0.00 3.55
8343 13073 6.203338 GTGTCCTTTTTAGAACGTGACCATTA 59.797 38.462 0.00 0.00 0.00 1.90
8344 13074 6.425721 TGTCCTTTTTAGAACGTGACCATTAG 59.574 38.462 0.00 0.00 0.00 1.73
8345 13075 5.935789 TCCTTTTTAGAACGTGACCATTAGG 59.064 40.000 0.00 0.00 42.21 2.69
8392 13122 4.939509 CCGTTAGGTTATGTTTGTCCTG 57.060 45.455 0.00 0.00 0.00 3.86
8399 13129 3.758554 GGTTATGTTTGTCCTGAGCACAT 59.241 43.478 0.00 0.00 32.80 3.21
8421 13151 1.741770 GTCGGTCAGGTCCATGCAC 60.742 63.158 0.00 0.00 0.00 4.57
8423 13153 2.347490 GGTCAGGTCCATGCACGT 59.653 61.111 0.00 0.00 0.00 4.49
8424 13154 1.594833 GGTCAGGTCCATGCACGTA 59.405 57.895 0.00 0.00 0.00 3.57
8425 13155 0.739813 GGTCAGGTCCATGCACGTAC 60.740 60.000 0.00 0.00 0.00 3.67
8430 13166 2.159627 CAGGTCCATGCACGTACTTTTC 59.840 50.000 0.00 0.00 0.00 2.29
8459 13681 2.437413 CTGCATGATGATGATCCTGGG 58.563 52.381 0.00 0.00 0.00 4.45
8589 14047 2.032528 CCAAGGCCGTCTGAGCAA 59.967 61.111 0.00 0.00 0.00 3.91
8601 14059 1.138069 TCTGAGCAAACACTCGGACAA 59.862 47.619 0.00 0.00 45.14 3.18
8646 14104 2.362369 CCACCATCAGGAGCGGAGT 61.362 63.158 0.00 0.00 38.69 3.85
8647 14105 1.142748 CACCATCAGGAGCGGAGTC 59.857 63.158 0.00 0.00 38.69 3.36
8648 14106 1.305297 ACCATCAGGAGCGGAGTCA 60.305 57.895 0.00 0.00 38.69 3.41
8649 14107 1.142748 CCATCAGGAGCGGAGTCAC 59.857 63.158 0.00 0.00 36.89 3.67
8650 14108 1.142748 CATCAGGAGCGGAGTCACC 59.857 63.158 0.00 0.00 0.00 4.02
8651 14109 1.305297 ATCAGGAGCGGAGTCACCA 60.305 57.895 0.00 0.00 38.90 4.17
8679 14140 2.678934 CACTGCTTGGGCTGCCAT 60.679 61.111 22.05 0.00 40.37 4.40
8724 14185 4.283722 ACTTGATCGGACAAGAAGGTTACT 59.716 41.667 22.10 2.45 46.85 2.24
8736 14197 3.072622 AGAAGGTTACTCCAACTCCAACC 59.927 47.826 0.00 0.00 39.15 3.77
8737 14198 2.414612 AGGTTACTCCAACTCCAACCA 58.585 47.619 4.75 0.00 40.92 3.67
8740 14201 1.809133 TACTCCAACTCCAACCACCA 58.191 50.000 0.00 0.00 0.00 4.17
8742 14203 2.344592 ACTCCAACTCCAACCACCATA 58.655 47.619 0.00 0.00 0.00 2.74
8749 14210 2.039879 ACTCCAACCACCATACTTGTCC 59.960 50.000 0.00 0.00 0.00 4.02
8753 14214 0.323629 ACCACCATACTTGTCCACCG 59.676 55.000 0.00 0.00 0.00 4.94
8760 14221 2.380084 TACTTGTCCACCGCATTCTC 57.620 50.000 0.00 0.00 0.00 2.87
8768 14229 1.448540 ACCGCATTCTCGCCTCAAG 60.449 57.895 0.00 0.00 0.00 3.02
8776 14237 4.437239 CATTCTCGCCTCAAGTAAGATGT 58.563 43.478 0.00 0.00 0.00 3.06
8779 14240 3.509967 TCTCGCCTCAAGTAAGATGTCAA 59.490 43.478 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.654160 GTGGCTTTACGGGATTACGC 59.346 55.000 0.00 0.00 37.37 4.42
2 3 1.134610 AGGTGGCTTTACGGGATTACG 60.135 52.381 0.00 0.00 40.31 3.18
3 4 2.285977 CAGGTGGCTTTACGGGATTAC 58.714 52.381 0.00 0.00 0.00 1.89
4 5 1.210967 CCAGGTGGCTTTACGGGATTA 59.789 52.381 0.00 0.00 0.00 1.75
7 8 1.833787 GACCAGGTGGCTTTACGGGA 61.834 60.000 0.00 0.00 39.32 5.14
8 9 1.376812 GACCAGGTGGCTTTACGGG 60.377 63.158 0.00 0.00 39.32 5.28
9 10 0.673644 CTGACCAGGTGGCTTTACGG 60.674 60.000 0.00 0.00 39.32 4.02
10 11 0.320374 TCTGACCAGGTGGCTTTACG 59.680 55.000 0.00 0.00 39.32 3.18
12 13 1.271379 GCTTCTGACCAGGTGGCTTTA 60.271 52.381 0.00 0.00 39.32 1.85
13 14 0.538287 GCTTCTGACCAGGTGGCTTT 60.538 55.000 0.00 0.00 39.32 3.51
14 15 1.073897 GCTTCTGACCAGGTGGCTT 59.926 57.895 0.00 0.00 39.32 4.35
15 16 2.753029 GCTTCTGACCAGGTGGCT 59.247 61.111 0.00 0.00 39.32 4.75
16 17 2.743928 CGCTTCTGACCAGGTGGC 60.744 66.667 0.00 0.00 39.32 5.01
18 19 0.460987 GATCCGCTTCTGACCAGGTG 60.461 60.000 0.00 0.00 0.00 4.00
19 20 1.901085 GATCCGCTTCTGACCAGGT 59.099 57.895 0.00 0.00 0.00 4.00
20 21 1.227089 CGATCCGCTTCTGACCAGG 60.227 63.158 0.00 0.00 0.00 4.45
21 22 4.409342 CGATCCGCTTCTGACCAG 57.591 61.111 0.00 0.00 0.00 4.00
46 47 4.241555 ATGCGGTGGAGCGATCCC 62.242 66.667 18.75 8.49 40.67 3.85
47 48 2.663188 GATGCGGTGGAGCGATCC 60.663 66.667 14.17 14.17 40.67 3.36
48 49 2.954020 TTCGATGCGGTGGAGCGATC 62.954 60.000 1.74 0.00 40.67 3.69
49 50 3.076258 TTCGATGCGGTGGAGCGAT 62.076 57.895 1.74 0.00 40.67 4.58
50 51 3.754530 TTCGATGCGGTGGAGCGA 61.755 61.111 1.74 0.00 40.67 4.93
51 52 3.554692 GTTCGATGCGGTGGAGCG 61.555 66.667 0.00 0.00 40.67 5.03
52 53 3.554692 CGTTCGATGCGGTGGAGC 61.555 66.667 2.47 0.00 37.71 4.70
53 54 2.885644 CCGTTCGATGCGGTGGAG 60.886 66.667 17.48 0.00 43.84 3.86
59 60 2.390288 CGTCAACCGTTCGATGCG 59.610 61.111 3.33 3.33 0.00 4.73
70 71 4.077188 GAGCGCAGGCACGTCAAC 62.077 66.667 11.47 0.00 43.41 3.18
85 86 2.933036 CTCGTTCGTCGCGTCGAG 60.933 66.667 25.62 21.35 41.58 4.04
93 94 3.832171 CAGCTGCGCTCGTTCGTC 61.832 66.667 9.73 0.00 36.40 4.20
108 109 2.774007 CCTGAAATCTTAAACGCGCAG 58.226 47.619 5.73 2.42 0.00 5.18
109 110 1.135803 GCCTGAAATCTTAAACGCGCA 60.136 47.619 5.73 0.00 0.00 6.09
110 111 1.135803 TGCCTGAAATCTTAAACGCGC 60.136 47.619 5.73 0.00 0.00 6.86
111 112 2.892373 TGCCTGAAATCTTAAACGCG 57.108 45.000 3.53 3.53 0.00 6.01
112 113 5.898630 TTTTTGCCTGAAATCTTAAACGC 57.101 34.783 0.00 0.00 0.00 4.84
115 116 9.515020 CGCTATATTTTTGCCTGAAATCTTAAA 57.485 29.630 0.00 0.00 0.00 1.52
116 117 8.898761 TCGCTATATTTTTGCCTGAAATCTTAA 58.101 29.630 0.00 0.00 0.00 1.85
117 118 8.445275 TCGCTATATTTTTGCCTGAAATCTTA 57.555 30.769 0.00 0.00 0.00 2.10
118 119 7.333528 TCGCTATATTTTTGCCTGAAATCTT 57.666 32.000 0.00 0.00 0.00 2.40
119 120 6.514048 GCTCGCTATATTTTTGCCTGAAATCT 60.514 38.462 0.00 0.00 0.00 2.40
120 121 5.626955 GCTCGCTATATTTTTGCCTGAAATC 59.373 40.000 0.00 0.00 0.00 2.17
121 122 5.507985 GGCTCGCTATATTTTTGCCTGAAAT 60.508 40.000 0.00 0.00 36.32 2.17
122 123 4.202010 GGCTCGCTATATTTTTGCCTGAAA 60.202 41.667 0.00 0.00 36.32 2.69
123 124 3.315191 GGCTCGCTATATTTTTGCCTGAA 59.685 43.478 0.00 0.00 36.32 3.02
124 125 2.878406 GGCTCGCTATATTTTTGCCTGA 59.122 45.455 0.00 0.00 36.32 3.86
125 126 2.030805 GGGCTCGCTATATTTTTGCCTG 60.031 50.000 0.00 0.00 38.93 4.85
126 127 2.230660 GGGCTCGCTATATTTTTGCCT 58.769 47.619 0.00 0.00 38.93 4.75
127 128 1.069227 CGGGCTCGCTATATTTTTGCC 60.069 52.381 0.00 0.00 38.28 4.52
128 129 1.871039 TCGGGCTCGCTATATTTTTGC 59.129 47.619 0.00 0.00 36.13 3.68
129 130 3.181530 CGATCGGGCTCGCTATATTTTTG 60.182 47.826 7.38 0.00 36.13 2.44
130 131 2.993899 CGATCGGGCTCGCTATATTTTT 59.006 45.455 7.38 0.00 36.13 1.94
131 132 2.607187 CGATCGGGCTCGCTATATTTT 58.393 47.619 7.38 0.00 36.13 1.82
132 133 1.135083 CCGATCGGGCTCGCTATATTT 60.135 52.381 26.95 0.00 37.33 1.40
133 134 0.456221 CCGATCGGGCTCGCTATATT 59.544 55.000 26.95 0.00 37.33 1.28
134 135 0.680280 ACCGATCGGGCTCGCTATAT 60.680 55.000 35.87 9.95 40.62 0.86
135 136 0.036105 TACCGATCGGGCTCGCTATA 60.036 55.000 35.87 15.23 40.62 1.31
136 137 0.680280 ATACCGATCGGGCTCGCTAT 60.680 55.000 35.87 20.67 40.62 2.97
137 138 0.892358 AATACCGATCGGGCTCGCTA 60.892 55.000 35.87 19.36 40.62 4.26
138 139 2.201022 AATACCGATCGGGCTCGCT 61.201 57.895 35.87 17.76 40.62 4.93
139 140 2.022129 CAATACCGATCGGGCTCGC 61.022 63.158 35.87 0.00 40.62 5.03
140 141 1.372997 CCAATACCGATCGGGCTCG 60.373 63.158 35.87 21.29 40.62 5.03
141 142 1.004918 CCCAATACCGATCGGGCTC 60.005 63.158 35.87 0.00 40.62 4.70
142 143 3.148084 CCCAATACCGATCGGGCT 58.852 61.111 35.87 20.75 40.62 5.19
144 145 0.179029 AAAGCCCAATACCGATCGGG 60.179 55.000 35.87 19.01 42.03 5.14
145 146 0.944386 CAAAGCCCAATACCGATCGG 59.056 55.000 32.20 32.20 42.03 4.18
146 147 0.944386 CCAAAGCCCAATACCGATCG 59.056 55.000 8.51 8.51 0.00 3.69
147 148 0.668535 GCCAAAGCCCAATACCGATC 59.331 55.000 0.00 0.00 0.00 3.69
148 149 1.101049 CGCCAAAGCCCAATACCGAT 61.101 55.000 0.00 0.00 34.57 4.18
177 178 6.166279 TGACTACTCAAGGTCTTTTAGCATG 58.834 40.000 0.00 0.00 34.01 4.06
188 189 4.846940 AGAAAGGGAATGACTACTCAAGGT 59.153 41.667 0.00 0.00 0.00 3.50
415 417 1.035139 GAATTTCCCCATCTGCGCAT 58.965 50.000 12.24 0.00 0.00 4.73
469 471 4.556104 GCAGATCGACTTATACTAACCGCA 60.556 45.833 0.00 0.00 0.00 5.69
503 505 1.410004 TTAGGTAGGCCCATCACTCG 58.590 55.000 0.00 0.00 34.66 4.18
511 513 0.110678 GGGAGCATTTAGGTAGGCCC 59.889 60.000 0.00 0.00 34.57 5.80
634 636 3.991605 ACGTAACAAGCAATAGAAGCG 57.008 42.857 0.00 0.00 37.01 4.68
706 708 7.246674 TGCATAAGCTACAAGTGCTATAAAC 57.753 36.000 9.20 0.00 40.22 2.01
717 719 6.014669 AGGGAATTTGTTTGCATAAGCTACAA 60.015 34.615 6.98 6.98 41.09 2.41
743 745 1.615392 GACATGGAAAAGCTGCCACTT 59.385 47.619 5.46 0.00 36.92 3.16
758 762 4.063998 TGCAGTGGATTAGCTAGACATG 57.936 45.455 0.00 0.00 0.00 3.21
813 817 2.952978 GTCTTCCATAGGAGCTCGAAGA 59.047 50.000 20.48 20.48 37.27 2.87
846 850 2.549349 GCTCTTGGTTTTCTACGTGGGA 60.549 50.000 0.00 0.00 0.00 4.37
847 851 1.804748 GCTCTTGGTTTTCTACGTGGG 59.195 52.381 0.00 0.00 0.00 4.61
848 852 2.480419 CTGCTCTTGGTTTTCTACGTGG 59.520 50.000 0.00 0.00 0.00 4.94
849 853 3.059597 CACTGCTCTTGGTTTTCTACGTG 60.060 47.826 0.00 0.00 0.00 4.49
850 854 3.131396 CACTGCTCTTGGTTTTCTACGT 58.869 45.455 0.00 0.00 0.00 3.57
851 855 3.390135 TCACTGCTCTTGGTTTTCTACG 58.610 45.455 0.00 0.00 0.00 3.51
852 856 4.381411 ACTCACTGCTCTTGGTTTTCTAC 58.619 43.478 0.00 0.00 0.00 2.59
853 857 4.689612 ACTCACTGCTCTTGGTTTTCTA 57.310 40.909 0.00 0.00 0.00 2.10
854 858 3.567478 ACTCACTGCTCTTGGTTTTCT 57.433 42.857 0.00 0.00 0.00 2.52
855 859 4.574828 TGTAACTCACTGCTCTTGGTTTTC 59.425 41.667 0.00 0.00 0.00 2.29
856 860 4.523083 TGTAACTCACTGCTCTTGGTTTT 58.477 39.130 0.00 0.00 0.00 2.43
857 861 4.150897 TGTAACTCACTGCTCTTGGTTT 57.849 40.909 0.00 0.00 0.00 3.27
858 862 3.838244 TGTAACTCACTGCTCTTGGTT 57.162 42.857 0.00 0.00 0.00 3.67
859 863 3.838244 TTGTAACTCACTGCTCTTGGT 57.162 42.857 0.00 0.00 0.00 3.67
860 864 4.261197 GGTTTTGTAACTCACTGCTCTTGG 60.261 45.833 0.00 0.00 34.59 3.61
861 865 4.335315 TGGTTTTGTAACTCACTGCTCTTG 59.665 41.667 0.00 0.00 34.59 3.02
862 866 4.523083 TGGTTTTGTAACTCACTGCTCTT 58.477 39.130 0.00 0.00 34.59 2.85
863 867 4.150897 TGGTTTTGTAACTCACTGCTCT 57.849 40.909 0.00 0.00 34.59 4.09
864 868 4.574828 TCTTGGTTTTGTAACTCACTGCTC 59.425 41.667 0.00 0.00 34.59 4.26
865 869 4.523083 TCTTGGTTTTGTAACTCACTGCT 58.477 39.130 0.00 0.00 34.59 4.24
866 870 4.893424 TCTTGGTTTTGTAACTCACTGC 57.107 40.909 0.00 0.00 34.59 4.40
867 871 6.128007 ACTGTTCTTGGTTTTGTAACTCACTG 60.128 38.462 0.00 0.00 34.59 3.66
868 872 5.944007 ACTGTTCTTGGTTTTGTAACTCACT 59.056 36.000 0.00 0.00 34.59 3.41
869 873 6.190954 ACTGTTCTTGGTTTTGTAACTCAC 57.809 37.500 0.00 0.00 34.59 3.51
870 874 6.827586 AACTGTTCTTGGTTTTGTAACTCA 57.172 33.333 0.00 0.00 34.59 3.41
871 875 8.205131 TCTAACTGTTCTTGGTTTTGTAACTC 57.795 34.615 0.00 0.00 34.59 3.01
872 876 8.570068 TTCTAACTGTTCTTGGTTTTGTAACT 57.430 30.769 0.00 0.00 34.59 2.24
873 877 9.447040 GATTCTAACTGTTCTTGGTTTTGTAAC 57.553 33.333 0.00 0.00 0.00 2.50
874 878 8.339714 CGATTCTAACTGTTCTTGGTTTTGTAA 58.660 33.333 0.00 0.00 0.00 2.41
875 879 7.519328 GCGATTCTAACTGTTCTTGGTTTTGTA 60.519 37.037 0.00 0.00 0.00 2.41
876 880 6.725246 CGATTCTAACTGTTCTTGGTTTTGT 58.275 36.000 0.00 0.00 0.00 2.83
877 881 5.625311 GCGATTCTAACTGTTCTTGGTTTTG 59.375 40.000 0.00 0.00 0.00 2.44
878 882 5.560183 CGCGATTCTAACTGTTCTTGGTTTT 60.560 40.000 0.00 0.00 0.00 2.43
879 883 4.084013 CGCGATTCTAACTGTTCTTGGTTT 60.084 41.667 0.00 0.00 0.00 3.27
880 884 3.432252 CGCGATTCTAACTGTTCTTGGTT 59.568 43.478 0.00 0.00 0.00 3.67
881 885 2.993899 CGCGATTCTAACTGTTCTTGGT 59.006 45.455 0.00 0.00 0.00 3.67
882 886 2.993899 ACGCGATTCTAACTGTTCTTGG 59.006 45.455 15.93 0.00 0.00 3.61
883 887 4.259451 GCTACGCGATTCTAACTGTTCTTG 60.259 45.833 15.93 0.00 0.00 3.02
884 888 3.858238 GCTACGCGATTCTAACTGTTCTT 59.142 43.478 15.93 0.00 0.00 2.52
885 889 3.128938 AGCTACGCGATTCTAACTGTTCT 59.871 43.478 15.93 0.00 0.00 3.01
886 890 3.240861 CAGCTACGCGATTCTAACTGTTC 59.759 47.826 15.93 0.00 0.00 3.18
887 891 3.179830 CAGCTACGCGATTCTAACTGTT 58.820 45.455 15.93 0.00 0.00 3.16
888 892 2.798680 CAGCTACGCGATTCTAACTGT 58.201 47.619 15.93 0.00 0.00 3.55
889 893 1.518929 GCAGCTACGCGATTCTAACTG 59.481 52.381 15.93 6.82 0.00 3.16
890 894 1.841450 GCAGCTACGCGATTCTAACT 58.159 50.000 15.93 0.00 0.00 2.24
900 904 4.803426 AGAGGCACGCAGCTACGC 62.803 66.667 6.18 0.00 44.79 4.42
901 905 1.291877 AAAAGAGGCACGCAGCTACG 61.292 55.000 4.40 4.40 44.79 3.51
902 906 0.875059 AAAAAGAGGCACGCAGCTAC 59.125 50.000 0.27 0.00 44.79 3.58
903 907 3.322514 AAAAAGAGGCACGCAGCTA 57.677 47.368 0.27 0.00 44.79 3.32
904 908 4.164258 AAAAAGAGGCACGCAGCT 57.836 50.000 0.27 0.00 44.79 4.24
946 950 1.523758 CAAAACCGGTCTTCTCTGGG 58.476 55.000 8.04 0.00 38.12 4.45
949 953 2.486727 GGAACCAAAACCGGTCTTCTCT 60.487 50.000 8.04 0.00 38.76 3.10
982 986 2.885266 TCATGTCTGAGCCGGAGTATAC 59.115 50.000 5.05 0.00 0.00 1.47
983 987 3.223674 TCATGTCTGAGCCGGAGTATA 57.776 47.619 5.05 0.00 0.00 1.47
985 989 1.751351 CTTCATGTCTGAGCCGGAGTA 59.249 52.381 5.05 0.00 31.68 2.59
986 990 0.534412 CTTCATGTCTGAGCCGGAGT 59.466 55.000 5.05 0.00 31.68 3.85
987 991 0.820226 TCTTCATGTCTGAGCCGGAG 59.180 55.000 5.05 0.00 31.68 4.63
993 997 3.677121 CGGTTTCACTCTTCATGTCTGAG 59.323 47.826 9.55 9.55 31.68 3.35
996 1000 3.322254 AGTCGGTTTCACTCTTCATGTCT 59.678 43.478 0.00 0.00 0.00 3.41
1024 1028 0.309612 CCCCAACTTTTCCGACAACG 59.690 55.000 0.00 0.00 39.43 4.10
1089 1093 0.389391 CTGTCCTGTGTCGTCTGGTT 59.611 55.000 0.00 0.00 0.00 3.67
1090 1094 1.464376 CCTGTCCTGTGTCGTCTGGT 61.464 60.000 0.00 0.00 0.00 4.00
1091 1095 1.290324 CCTGTCCTGTGTCGTCTGG 59.710 63.158 0.00 0.00 0.00 3.86
1092 1096 1.373497 GCCTGTCCTGTGTCGTCTG 60.373 63.158 0.00 0.00 0.00 3.51
1095 1099 2.842462 TGGCCTGTCCTGTGTCGT 60.842 61.111 3.32 0.00 35.26 4.34
1190 1194 3.319198 GAGGTCTTGTGGGGCCGA 61.319 66.667 0.00 0.00 0.00 5.54
1471 1502 3.921521 CGGAGAACGCTAGTCCCT 58.078 61.111 0.00 0.00 34.82 4.20
1509 1540 2.515901 GCCCACCAGACACAACCT 59.484 61.111 0.00 0.00 0.00 3.50
1527 1558 3.460868 CAATTGCTTCCCGCCCCC 61.461 66.667 0.00 0.00 38.05 5.40
1562 1594 3.916359 TCTAGTGTGACAAAACCACCA 57.084 42.857 0.00 0.00 33.80 4.17
1576 1608 7.746475 GGTTGATTTCGATTTGTTCTTCTAGTG 59.254 37.037 0.00 0.00 0.00 2.74
1578 1610 7.119846 AGGGTTGATTTCGATTTGTTCTTCTAG 59.880 37.037 0.00 0.00 0.00 2.43
1579 1611 6.940298 AGGGTTGATTTCGATTTGTTCTTCTA 59.060 34.615 0.00 0.00 0.00 2.10
1582 1614 5.278957 CCAGGGTTGATTTCGATTTGTTCTT 60.279 40.000 0.00 0.00 0.00 2.52
1612 1647 5.649831 GCCCAGAATTCTCACAAACTATCTT 59.350 40.000 4.57 0.00 0.00 2.40
1613 1648 5.045286 AGCCCAGAATTCTCACAAACTATCT 60.045 40.000 4.57 0.00 0.00 1.98
1672 1707 4.718858 TCGTGTCAAACAAATAACCGAG 57.281 40.909 0.00 0.00 0.00 4.63
1762 1797 4.610333 TCCTGATAACTCTCCAGCTTACA 58.390 43.478 0.00 0.00 0.00 2.41
1763 1798 4.647399 ACTCCTGATAACTCTCCAGCTTAC 59.353 45.833 0.00 0.00 0.00 2.34
1764 1799 4.646945 CACTCCTGATAACTCTCCAGCTTA 59.353 45.833 0.00 0.00 0.00 3.09
1765 1800 3.450457 CACTCCTGATAACTCTCCAGCTT 59.550 47.826 0.00 0.00 0.00 3.74
1766 1801 3.030291 CACTCCTGATAACTCTCCAGCT 58.970 50.000 0.00 0.00 0.00 4.24
1767 1802 3.027412 TCACTCCTGATAACTCTCCAGC 58.973 50.000 0.00 0.00 0.00 4.85
1863 1898 1.068194 GCAGTAGACAGTGAGCTCGTT 60.068 52.381 9.64 0.00 0.00 3.85
1898 1933 4.336889 TCCTAGCAATCCTATTTCACCG 57.663 45.455 0.00 0.00 0.00 4.94
1995 2030 5.201713 TGAAGACTACCACAGAAAGACAG 57.798 43.478 0.00 0.00 0.00 3.51
2010 2045 5.645497 AGCAAGCGAAAATAGAATGAAGACT 59.355 36.000 0.00 0.00 0.00 3.24
2013 2048 7.096722 GCATAAGCAAGCGAAAATAGAATGAAG 60.097 37.037 0.00 0.00 41.58 3.02
2017 2052 6.038603 TGAGCATAAGCAAGCGAAAATAGAAT 59.961 34.615 0.00 0.00 45.49 2.40
2041 2077 2.724977 TAGCAAGTGAGAAGTCGGTG 57.275 50.000 0.00 0.00 0.00 4.94
3017 3053 9.942850 CCACATTAAAAATTTGGGATAAGAACT 57.057 29.630 0.00 0.00 0.00 3.01
3051 3087 7.700322 ACATACAGTGAAATCATCGTATCAC 57.300 36.000 0.00 0.00 41.88 3.06
3334 3430 6.039382 ACCTTTCCAGTTTCACATCTAAACAC 59.961 38.462 0.00 0.00 38.92 3.32
3726 4027 6.892310 GGATACAATCTGGAAATTTTGCAC 57.108 37.500 0.00 0.00 0.00 4.57
3893 4387 0.969149 AGCAACAGACCTGATCGACA 59.031 50.000 3.76 0.00 0.00 4.35
4066 4568 9.612620 CACAACTTTGATCATACCTTTTCTAAC 57.387 33.333 0.00 0.00 0.00 2.34
4238 4741 4.345257 AGGGTATGTGTGCCTCATACTTAG 59.655 45.833 18.43 0.00 43.85 2.18
4239 4742 4.295201 AGGGTATGTGTGCCTCATACTTA 58.705 43.478 18.43 0.00 43.85 2.24
4240 4743 3.115390 AGGGTATGTGTGCCTCATACTT 58.885 45.455 18.43 10.33 43.85 2.24
4242 4745 3.206150 CAAGGGTATGTGTGCCTCATAC 58.794 50.000 14.13 14.13 43.73 2.39
4243 4746 2.843730 ACAAGGGTATGTGTGCCTCATA 59.156 45.455 0.00 0.00 30.82 2.15
4244 4747 1.635487 ACAAGGGTATGTGTGCCTCAT 59.365 47.619 0.00 0.00 30.82 2.90
4246 4749 3.560636 ATACAAGGGTATGTGTGCCTC 57.439 47.619 0.00 0.00 38.76 4.70
4292 4798 3.983044 AGGGTGAAAGCGTTAGAGAAT 57.017 42.857 0.00 0.00 33.03 2.40
4453 4959 3.259123 TGCATATGGCTGATATCTGACGT 59.741 43.478 14.01 14.01 45.15 4.34
4584 5090 7.331934 ACTCACACAAATACACAGTAATAGCTG 59.668 37.037 0.00 0.00 41.92 4.24
4745 5251 2.694213 CACACAATGACCGTGGACATA 58.306 47.619 4.34 0.00 38.74 2.29
4858 5707 9.277565 CGTGTTTTCAATCAGTTTTGGATATAG 57.722 33.333 0.00 0.00 0.00 1.31
4860 5709 7.594758 CACGTGTTTTCAATCAGTTTTGGATAT 59.405 33.333 7.58 0.00 0.00 1.63
5338 6187 0.901114 TCGGAACAAGGGTCGATCCA 60.901 55.000 19.03 0.00 38.11 3.41
5665 6962 4.023193 GTGTTTCCCTGACCAATAACAGTG 60.023 45.833 0.00 0.00 32.93 3.66
6110 7407 1.508632 TTTGCGCCTTGTACAGAGTC 58.491 50.000 4.18 0.00 0.00 3.36
6279 7642 0.792640 CACACCTCTTCGCACATGTC 59.207 55.000 0.00 0.00 0.00 3.06
6280 7643 0.106708 ACACACCTCTTCGCACATGT 59.893 50.000 0.00 0.00 0.00 3.21
6281 7644 0.792640 GACACACCTCTTCGCACATG 59.207 55.000 0.00 0.00 0.00 3.21
6282 7645 0.667487 CGACACACCTCTTCGCACAT 60.667 55.000 0.00 0.00 0.00 3.21
6283 7646 1.299850 CGACACACCTCTTCGCACA 60.300 57.895 0.00 0.00 0.00 4.57
6284 7647 0.874607 AACGACACACCTCTTCGCAC 60.875 55.000 0.00 0.00 36.18 5.34
6285 7648 0.596600 GAACGACACACCTCTTCGCA 60.597 55.000 0.00 0.00 36.18 5.10
6286 7649 1.282930 GGAACGACACACCTCTTCGC 61.283 60.000 0.00 0.00 36.18 4.70
6287 7650 0.031585 TGGAACGACACACCTCTTCG 59.968 55.000 0.00 0.00 38.73 3.79
6288 7651 2.028930 AGATGGAACGACACACCTCTTC 60.029 50.000 0.00 0.00 0.00 2.87
6289 7652 1.971357 AGATGGAACGACACACCTCTT 59.029 47.619 0.00 0.00 0.00 2.85
6290 7653 1.633774 AGATGGAACGACACACCTCT 58.366 50.000 0.00 0.00 0.00 3.69
6291 7654 2.492484 ACTAGATGGAACGACACACCTC 59.508 50.000 0.00 0.00 0.00 3.85
6292 7655 2.231478 CACTAGATGGAACGACACACCT 59.769 50.000 0.00 0.00 0.00 4.00
6293 7656 2.230508 TCACTAGATGGAACGACACACC 59.769 50.000 0.00 0.00 0.00 4.16
6294 7657 3.502920 CTCACTAGATGGAACGACACAC 58.497 50.000 0.00 0.00 0.00 3.82
6295 7658 2.094700 GCTCACTAGATGGAACGACACA 60.095 50.000 0.00 0.00 0.00 3.72
6296 7659 2.094700 TGCTCACTAGATGGAACGACAC 60.095 50.000 0.00 0.00 0.00 3.67
6297 7660 2.167662 TGCTCACTAGATGGAACGACA 58.832 47.619 0.00 0.00 0.00 4.35
6298 7661 2.941453 TGCTCACTAGATGGAACGAC 57.059 50.000 0.00 0.00 0.00 4.34
6299 7662 5.791336 AATATGCTCACTAGATGGAACGA 57.209 39.130 0.00 0.00 0.00 3.85
6300 7663 6.682746 ACTAATATGCTCACTAGATGGAACG 58.317 40.000 0.00 0.00 0.00 3.95
6301 7664 8.144478 TCAACTAATATGCTCACTAGATGGAAC 58.856 37.037 0.00 0.00 0.00 3.62
6302 7665 8.250143 TCAACTAATATGCTCACTAGATGGAA 57.750 34.615 0.00 0.00 0.00 3.53
6303 7666 7.839680 TCAACTAATATGCTCACTAGATGGA 57.160 36.000 0.00 0.00 0.00 3.41
6304 7667 9.499479 AAATCAACTAATATGCTCACTAGATGG 57.501 33.333 0.00 0.00 0.00 3.51
6307 7670 8.830580 GCAAAATCAACTAATATGCTCACTAGA 58.169 33.333 0.00 0.00 0.00 2.43
6308 7671 8.834465 AGCAAAATCAACTAATATGCTCACTAG 58.166 33.333 0.00 0.00 38.16 2.57
6309 7672 8.615211 CAGCAAAATCAACTAATATGCTCACTA 58.385 33.333 0.00 0.00 40.40 2.74
6310 7673 7.337689 TCAGCAAAATCAACTAATATGCTCACT 59.662 33.333 0.00 0.00 40.40 3.41
6311 7674 7.475015 TCAGCAAAATCAACTAATATGCTCAC 58.525 34.615 0.00 0.00 40.40 3.51
6312 7675 7.628769 TCAGCAAAATCAACTAATATGCTCA 57.371 32.000 0.00 0.00 40.40 4.26
6320 7683 9.844790 CTTGTTCATATCAGCAAAATCAACTAA 57.155 29.630 0.00 0.00 0.00 2.24
6321 7684 7.970061 GCTTGTTCATATCAGCAAAATCAACTA 59.030 33.333 0.00 0.00 0.00 2.24
6322 7685 6.810182 GCTTGTTCATATCAGCAAAATCAACT 59.190 34.615 0.00 0.00 0.00 3.16
6323 7686 6.587226 TGCTTGTTCATATCAGCAAAATCAAC 59.413 34.615 0.00 0.00 0.00 3.18
6324 7687 6.689554 TGCTTGTTCATATCAGCAAAATCAA 58.310 32.000 0.00 0.00 0.00 2.57
6325 7688 6.270156 TGCTTGTTCATATCAGCAAAATCA 57.730 33.333 0.00 0.00 0.00 2.57
6326 7689 7.705325 AGATTGCTTGTTCATATCAGCAAAATC 59.295 33.333 9.33 4.32 43.85 2.17
6327 7690 7.553334 AGATTGCTTGTTCATATCAGCAAAAT 58.447 30.769 9.33 0.00 43.85 1.82
6328 7691 6.927416 AGATTGCTTGTTCATATCAGCAAAA 58.073 32.000 9.33 0.00 43.85 2.44
6329 7692 6.519679 AGATTGCTTGTTCATATCAGCAAA 57.480 33.333 9.33 0.00 43.85 3.68
6330 7693 7.283807 ACATAGATTGCTTGTTCATATCAGCAA 59.716 33.333 7.82 7.82 44.57 3.91
6331 7694 6.769341 ACATAGATTGCTTGTTCATATCAGCA 59.231 34.615 0.00 0.00 0.00 4.41
6332 7695 7.199541 ACATAGATTGCTTGTTCATATCAGC 57.800 36.000 0.00 0.00 0.00 4.26
6340 7703 7.862372 TGTTTTCTGAACATAGATTGCTTGTTC 59.138 33.333 7.82 7.82 45.94 3.18
6341 7704 7.715657 TGTTTTCTGAACATAGATTGCTTGTT 58.284 30.769 0.00 0.00 36.34 2.83
6342 7705 7.275888 TGTTTTCTGAACATAGATTGCTTGT 57.724 32.000 0.00 0.00 0.00 3.16
6343 7706 6.307318 GCTGTTTTCTGAACATAGATTGCTTG 59.693 38.462 4.73 0.00 0.00 4.01
6344 7707 6.385033 GCTGTTTTCTGAACATAGATTGCTT 58.615 36.000 4.73 0.00 0.00 3.91
6345 7708 5.105997 GGCTGTTTTCTGAACATAGATTGCT 60.106 40.000 4.73 0.00 0.00 3.91
6346 7709 5.098211 GGCTGTTTTCTGAACATAGATTGC 58.902 41.667 4.73 0.00 0.00 3.56
6347 7710 6.258230 TGGCTGTTTTCTGAACATAGATTG 57.742 37.500 4.73 0.00 0.00 2.67
6348 7711 8.757982 ATATGGCTGTTTTCTGAACATAGATT 57.242 30.769 4.73 0.00 0.00 2.40
6349 7712 8.627403 CAATATGGCTGTTTTCTGAACATAGAT 58.373 33.333 4.73 0.00 0.00 1.98
6473 7836 2.166459 TCTATCAGCTCCTGAAACACGG 59.834 50.000 0.00 0.00 44.04 4.94
6696 8059 1.271054 ACAGCCAAGTCACTGCCTAAG 60.271 52.381 0.00 0.00 37.42 2.18
6697 8060 0.764890 ACAGCCAAGTCACTGCCTAA 59.235 50.000 0.00 0.00 37.42 2.69
6798 8161 4.096984 GCCTGAAAACATCCAGATAAGGTG 59.903 45.833 0.00 0.00 32.37 4.00
6885 8248 5.488919 AGATGAGGGTGTTTCCTTCTGATAA 59.511 40.000 0.00 0.00 42.05 1.75
7005 8368 8.810652 TTTCCATCTTTGTAGCATTGTTTAAC 57.189 30.769 0.00 0.00 0.00 2.01
7684 9105 6.014156 GGAGCAGGGTTATCAGAGTTATATGT 60.014 42.308 0.00 0.00 0.00 2.29
7698 9119 2.365105 CCTCCGGGAGCAGGGTTA 60.365 66.667 18.91 0.00 33.58 2.85
7731 9152 0.453793 CCTCGAAGCTCACGTCATCT 59.546 55.000 11.82 0.00 0.00 2.90
7806 9232 3.503748 GGTGCTACACAAAATTGCTCTCT 59.496 43.478 0.00 0.00 35.86 3.10
7822 9248 0.608130 AGATGACTGCGTTGGTGCTA 59.392 50.000 0.00 0.00 35.36 3.49
7823 9249 0.671781 GAGATGACTGCGTTGGTGCT 60.672 55.000 0.00 0.00 35.36 4.40
7824 9250 1.639298 GGAGATGACTGCGTTGGTGC 61.639 60.000 0.00 0.00 0.00 5.01
7826 9252 0.036952 CAGGAGATGACTGCGTTGGT 60.037 55.000 0.00 0.00 39.46 3.67
7827 9253 0.036952 ACAGGAGATGACTGCGTTGG 60.037 55.000 0.00 0.00 39.55 3.77
7831 9260 0.738762 CACCACAGGAGATGACTGCG 60.739 60.000 0.00 0.00 39.55 5.18
7873 9302 3.944422 ACAAGACATGACAAACACGAC 57.056 42.857 0.00 0.00 0.00 4.34
7882 9311 8.342634 ACACAATACAAAGTAACAAGACATGAC 58.657 33.333 0.00 0.00 0.00 3.06
7913 9342 0.606944 AACCGAAGCGCATAAACCCA 60.607 50.000 11.47 0.00 0.00 4.51
7925 9354 8.964150 CCTTTTTACACTTTTTGATAACCGAAG 58.036 33.333 0.00 0.00 0.00 3.79
7926 9355 7.435784 GCCTTTTTACACTTTTTGATAACCGAA 59.564 33.333 0.00 0.00 0.00 4.30
7928 9357 6.129300 CGCCTTTTTACACTTTTTGATAACCG 60.129 38.462 0.00 0.00 0.00 4.44
7929 9358 6.346279 GCGCCTTTTTACACTTTTTGATAACC 60.346 38.462 0.00 0.00 0.00 2.85
7931 9360 5.692654 GGCGCCTTTTTACACTTTTTGATAA 59.307 36.000 22.15 0.00 0.00 1.75
7933 9362 4.055360 GGCGCCTTTTTACACTTTTTGAT 58.945 39.130 22.15 0.00 0.00 2.57
7934 9363 3.119101 TGGCGCCTTTTTACACTTTTTGA 60.119 39.130 29.70 0.00 0.00 2.69
7936 9365 3.528597 TGGCGCCTTTTTACACTTTTT 57.471 38.095 29.70 0.00 0.00 1.94
7955 9384 7.898725 GTCAACAGAAATGACAGTTTACTTG 57.101 36.000 2.01 0.00 45.13 3.16
7965 9394 6.912591 CAGTTTACTTGGTCAACAGAAATGAC 59.087 38.462 0.00 0.00 45.08 3.06
7966 9395 6.039270 CCAGTTTACTTGGTCAACAGAAATGA 59.961 38.462 0.00 0.00 0.00 2.57
7967 9396 6.183360 ACCAGTTTACTTGGTCAACAGAAATG 60.183 38.462 0.00 0.00 0.00 2.32
7968 9397 5.891551 ACCAGTTTACTTGGTCAACAGAAAT 59.108 36.000 0.00 0.00 0.00 2.17
7969 9398 5.258051 ACCAGTTTACTTGGTCAACAGAAA 58.742 37.500 0.00 0.00 0.00 2.52
7970 9399 4.850680 ACCAGTTTACTTGGTCAACAGAA 58.149 39.130 0.00 0.00 0.00 3.02
7971 9400 4.497291 ACCAGTTTACTTGGTCAACAGA 57.503 40.909 0.00 0.00 0.00 3.41
7978 9407 4.850680 TGAAACAGACCAGTTTACTTGGT 58.149 39.130 0.00 0.00 41.48 3.67
7979 9408 5.762045 CATGAAACAGACCAGTTTACTTGG 58.238 41.667 0.00 0.00 41.48 3.61
7980 9409 5.009010 AGCATGAAACAGACCAGTTTACTTG 59.991 40.000 0.00 0.00 41.48 3.16
7981 9410 5.133221 AGCATGAAACAGACCAGTTTACTT 58.867 37.500 0.00 0.00 41.48 2.24
7982 9411 4.718961 AGCATGAAACAGACCAGTTTACT 58.281 39.130 0.00 0.00 41.48 2.24
7983 9412 5.106673 GGTAGCATGAAACAGACCAGTTTAC 60.107 44.000 0.00 0.00 41.48 2.01
7984 9413 5.001232 GGTAGCATGAAACAGACCAGTTTA 58.999 41.667 0.00 0.00 41.48 2.01
7985 9414 3.821033 GGTAGCATGAAACAGACCAGTTT 59.179 43.478 0.00 0.00 43.90 2.66
7986 9415 3.073062 AGGTAGCATGAAACAGACCAGTT 59.927 43.478 0.00 0.00 0.00 3.16
7987 9416 2.639839 AGGTAGCATGAAACAGACCAGT 59.360 45.455 0.00 0.00 0.00 4.00
7988 9417 3.340814 AGGTAGCATGAAACAGACCAG 57.659 47.619 0.00 0.00 0.00 4.00
7989 9418 3.181445 ACAAGGTAGCATGAAACAGACCA 60.181 43.478 3.86 0.00 0.00 4.02
7990 9419 3.412386 ACAAGGTAGCATGAAACAGACC 58.588 45.455 3.86 0.00 0.00 3.85
7991 9420 4.065088 TGACAAGGTAGCATGAAACAGAC 58.935 43.478 3.86 0.00 0.00 3.51
7992 9421 4.350368 TGACAAGGTAGCATGAAACAGA 57.650 40.909 3.86 0.00 0.00 3.41
7993 9422 4.320494 GGTTGACAAGGTAGCATGAAACAG 60.320 45.833 16.27 0.00 0.00 3.16
7994 9423 3.568007 GGTTGACAAGGTAGCATGAAACA 59.432 43.478 16.27 7.25 0.00 2.83
7995 9424 3.568007 TGGTTGACAAGGTAGCATGAAAC 59.432 43.478 3.86 7.79 0.00 2.78
7996 9425 3.826524 TGGTTGACAAGGTAGCATGAAA 58.173 40.909 3.86 0.00 0.00 2.69
7997 9426 3.500448 TGGTTGACAAGGTAGCATGAA 57.500 42.857 3.86 0.00 0.00 2.57
7998 9427 3.346315 CATGGTTGACAAGGTAGCATGA 58.654 45.455 10.23 0.00 45.69 3.07
7999 9428 3.346315 TCATGGTTGACAAGGTAGCATG 58.654 45.455 9.70 9.70 44.75 4.06
8006 9435 1.203052 GGCACATCATGGTTGACAAGG 59.797 52.381 0.00 0.00 33.85 3.61
8030 12190 5.603596 AGTTTACGACACATACCAAACTGA 58.396 37.500 0.00 0.00 35.51 3.41
8042 12202 3.306703 TGAAACGGACAAGTTTACGACAC 59.693 43.478 0.00 0.00 43.54 3.67
8046 12206 3.062369 TGTGTGAAACGGACAAGTTTACG 59.938 43.478 0.00 0.00 43.54 3.18
8047 12207 4.336932 GTGTGTGAAACGGACAAGTTTAC 58.663 43.478 0.00 0.00 43.54 2.01
8048 12208 3.062369 CGTGTGTGAAACGGACAAGTTTA 59.938 43.478 0.00 0.00 43.54 2.01
8049 12209 2.159626 CGTGTGTGAAACGGACAAGTTT 60.160 45.455 0.00 0.00 45.85 2.66
8050 12210 1.395608 CGTGTGTGAAACGGACAAGTT 59.604 47.619 0.00 0.00 42.39 2.66
8051 12211 1.003851 CGTGTGTGAAACGGACAAGT 58.996 50.000 0.00 0.00 42.39 3.16
8052 12212 0.315869 GCGTGTGTGAAACGGACAAG 60.316 55.000 0.00 0.00 42.39 3.16
8055 12370 2.244382 CGCGTGTGTGAAACGGAC 59.756 61.111 0.00 0.00 42.39 4.79
8069 12384 4.752142 AACGAAAATGCCGGCGCG 62.752 61.111 23.90 20.93 38.08 6.86
8074 12389 2.050691 CACAAGGAAACGAAAATGCCG 58.949 47.619 0.00 0.00 0.00 5.69
8088 12403 9.778993 CTATTTTCAGTTAATCATGACACAAGG 57.221 33.333 0.00 0.00 0.00 3.61
8128 12487 2.588034 GGGTTCAGATACGCCGGC 60.588 66.667 19.07 19.07 0.00 6.13
8152 12851 2.255252 GCGATGCCACGTTTTGCT 59.745 55.556 0.00 0.00 35.59 3.91
8191 12890 3.961414 TCCCCGGTTGAACAGCCC 61.961 66.667 0.00 0.00 0.00 5.19
8192 12891 2.671963 GTCCCCGGTTGAACAGCC 60.672 66.667 0.00 0.00 0.00 4.85
8215 12914 3.047280 TGCTGTCCGCGCGATTTT 61.047 55.556 34.63 0.00 43.27 1.82
8231 12930 3.773630 CCGTACCGCGCAACTGTG 61.774 66.667 8.75 0.00 39.71 3.66
8232 12931 3.980989 TCCGTACCGCGCAACTGT 61.981 61.111 8.75 0.62 39.71 3.55
8246 12949 1.095600 TGAAGATCTCCGTCTGTCCG 58.904 55.000 0.00 0.00 0.00 4.79
8258 12961 5.241949 AGGGAGACATATGTACGTGAAGATC 59.758 44.000 8.71 0.00 0.00 2.75
8259 12962 5.141182 AGGGAGACATATGTACGTGAAGAT 58.859 41.667 8.71 0.00 0.00 2.40
8260 12963 4.533815 AGGGAGACATATGTACGTGAAGA 58.466 43.478 8.71 0.00 0.00 2.87
8261 12964 4.554919 CGAGGGAGACATATGTACGTGAAG 60.555 50.000 8.71 0.00 0.00 3.02
8262 12965 3.314357 CGAGGGAGACATATGTACGTGAA 59.686 47.826 8.71 0.00 0.00 3.18
8264 12967 2.031069 CCGAGGGAGACATATGTACGTG 60.031 54.545 8.71 0.00 0.00 4.49
8265 12968 2.228059 CCGAGGGAGACATATGTACGT 58.772 52.381 8.71 4.08 0.00 3.57
8268 12971 1.244816 CGCCGAGGGAGACATATGTA 58.755 55.000 8.71 0.00 0.00 2.29
8269 12972 0.755698 ACGCCGAGGGAGACATATGT 60.756 55.000 8.43 8.43 0.00 2.29
8273 12976 2.478890 CGTACGCCGAGGGAGACAT 61.479 63.158 0.52 0.00 39.56 3.06
8275 12978 4.549516 GCGTACGCCGAGGGAGAC 62.550 72.222 29.51 0.00 39.56 3.36
8279 12982 4.977126 GATCGCGTACGCCGAGGG 62.977 72.222 32.64 19.08 39.56 4.30
8280 12983 2.931713 AAAGATCGCGTACGCCGAGG 62.932 60.000 32.64 19.46 39.56 4.63
8281 12984 1.138047 AAAAGATCGCGTACGCCGAG 61.138 55.000 32.64 19.82 39.56 4.63
8282 12985 1.153978 AAAAGATCGCGTACGCCGA 60.154 52.632 32.64 29.75 39.56 5.54
8283 12986 1.013755 CAAAAGATCGCGTACGCCG 60.014 57.895 32.64 26.04 39.84 6.46
8284 12987 0.024619 GTCAAAAGATCGCGTACGCC 59.975 55.000 32.64 19.68 39.84 5.68
8285 12988 0.313233 CGTCAAAAGATCGCGTACGC 60.313 55.000 29.83 29.83 39.84 4.42
8289 13019 1.384409 CGTTACGTCAAAAGATCGCGT 59.616 47.619 5.77 0.00 39.23 6.01
8291 13021 3.393022 GAACGTTACGTCAAAAGATCGC 58.607 45.455 11.79 0.00 39.99 4.58
8313 13043 2.154389 CGTTCTAAAAAGGACACGTCGG 59.846 50.000 0.00 0.00 0.00 4.79
8315 13045 3.798337 TCACGTTCTAAAAAGGACACGTC 59.202 43.478 0.00 0.00 38.75 4.34
8355 13085 2.619362 CGGTGTAGTCCCGCAAAAA 58.381 52.632 0.00 0.00 38.85 1.94
8356 13086 4.364817 CGGTGTAGTCCCGCAAAA 57.635 55.556 0.00 0.00 38.85 2.44
8362 13092 3.448660 ACATAACCTAACGGTGTAGTCCC 59.551 47.826 0.00 0.00 44.73 4.46
8363 13093 4.725790 ACATAACCTAACGGTGTAGTCC 57.274 45.455 0.00 0.00 44.73 3.85
8364 13094 5.928264 ACAAACATAACCTAACGGTGTAGTC 59.072 40.000 0.00 0.00 44.73 2.59
8365 13095 5.857268 ACAAACATAACCTAACGGTGTAGT 58.143 37.500 0.00 0.00 44.73 2.73
8366 13096 5.349543 GGACAAACATAACCTAACGGTGTAG 59.650 44.000 0.00 0.00 44.73 2.74
8367 13097 5.011943 AGGACAAACATAACCTAACGGTGTA 59.988 40.000 0.00 0.00 44.73 2.90
8368 13098 4.067192 GGACAAACATAACCTAACGGTGT 58.933 43.478 0.00 0.00 44.73 4.16
8369 13099 4.153475 CAGGACAAACATAACCTAACGGTG 59.847 45.833 0.00 0.00 44.73 4.94
8371 13101 4.571919 TCAGGACAAACATAACCTAACGG 58.428 43.478 0.00 0.00 0.00 4.44
8372 13102 4.092968 GCTCAGGACAAACATAACCTAACG 59.907 45.833 0.00 0.00 0.00 3.18
8373 13103 5.001232 TGCTCAGGACAAACATAACCTAAC 58.999 41.667 0.00 0.00 0.00 2.34
8374 13104 5.001232 GTGCTCAGGACAAACATAACCTAA 58.999 41.667 0.00 0.00 0.00 2.69
8375 13105 4.041075 TGTGCTCAGGACAAACATAACCTA 59.959 41.667 0.00 0.00 0.00 3.08
8376 13106 3.181445 TGTGCTCAGGACAAACATAACCT 60.181 43.478 0.00 0.00 0.00 3.50
8377 13107 3.146066 TGTGCTCAGGACAAACATAACC 58.854 45.455 0.00 0.00 0.00 2.85
8378 13108 4.726416 CATGTGCTCAGGACAAACATAAC 58.274 43.478 1.88 0.00 30.55 1.89
8379 13109 3.191162 GCATGTGCTCAGGACAAACATAA 59.809 43.478 1.88 0.00 38.21 1.90
8380 13110 2.749076 GCATGTGCTCAGGACAAACATA 59.251 45.455 1.88 0.00 38.21 2.29
8381 13111 1.542915 GCATGTGCTCAGGACAAACAT 59.457 47.619 1.88 0.00 38.21 2.71
8382 13112 0.953727 GCATGTGCTCAGGACAAACA 59.046 50.000 1.88 0.00 38.21 2.83
8383 13113 0.110056 CGCATGTGCTCAGGACAAAC 60.110 55.000 1.88 0.00 39.32 2.93
8384 13114 1.236616 CCGCATGTGCTCAGGACAAA 61.237 55.000 1.88 0.00 39.32 2.83
8385 13115 1.672030 CCGCATGTGCTCAGGACAA 60.672 57.895 1.88 0.00 39.32 3.18
8386 13116 2.046988 CCGCATGTGCTCAGGACA 60.047 61.111 0.00 0.00 39.32 4.02
8387 13117 2.046892 ACCGCATGTGCTCAGGAC 60.047 61.111 4.36 0.00 39.32 3.85
8388 13118 2.265739 GACCGCATGTGCTCAGGA 59.734 61.111 4.36 0.00 39.32 3.86
8389 13119 3.190849 CGACCGCATGTGCTCAGG 61.191 66.667 0.00 0.00 39.32 3.86
8390 13120 3.190849 CCGACCGCATGTGCTCAG 61.191 66.667 0.00 0.00 39.32 3.35
8391 13121 3.932580 GACCGACCGCATGTGCTCA 62.933 63.158 0.00 0.00 39.32 4.26
8392 13122 3.188786 GACCGACCGCATGTGCTC 61.189 66.667 0.00 0.00 39.32 4.26
8409 13139 1.808411 AAAGTACGTGCATGGACCTG 58.192 50.000 17.98 1.05 0.00 4.00
8421 13151 1.131126 CAGCATGCCAGGAAAAGTACG 59.869 52.381 15.66 0.00 0.00 3.67
8601 14059 1.133915 TGGAGGCCGAGTGTTCTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
8646 14104 0.986527 AGTGCAGATGGTGATGGTGA 59.013 50.000 0.00 0.00 0.00 4.02
8647 14105 1.092348 CAGTGCAGATGGTGATGGTG 58.908 55.000 0.00 0.00 0.00 4.17
8648 14106 0.679002 GCAGTGCAGATGGTGATGGT 60.679 55.000 11.09 0.00 0.00 3.55
8649 14107 0.393944 AGCAGTGCAGATGGTGATGG 60.394 55.000 19.20 0.00 0.00 3.51
8650 14108 1.132453 CAAGCAGTGCAGATGGTGATG 59.868 52.381 19.20 0.00 0.00 3.07
8651 14109 1.460504 CAAGCAGTGCAGATGGTGAT 58.539 50.000 19.20 0.00 0.00 3.06
8674 14135 4.776322 CGGCAAGGTCGGATGGCA 62.776 66.667 0.00 0.00 41.79 4.92
8724 14185 2.344592 AGTATGGTGGTTGGAGTTGGA 58.655 47.619 0.00 0.00 0.00 3.53
8736 14197 0.321210 TGCGGTGGACAAGTATGGTG 60.321 55.000 0.00 0.00 0.00 4.17
8737 14198 0.618458 ATGCGGTGGACAAGTATGGT 59.382 50.000 0.00 0.00 0.00 3.55
8740 14201 2.738643 CGAGAATGCGGTGGACAAGTAT 60.739 50.000 0.00 0.00 0.00 2.12
8742 14203 0.670546 CGAGAATGCGGTGGACAAGT 60.671 55.000 0.00 0.00 0.00 3.16
8749 14210 1.699656 CTTGAGGCGAGAATGCGGTG 61.700 60.000 0.00 0.00 35.06 4.94
8753 14214 2.893637 TCTTACTTGAGGCGAGAATGC 58.106 47.619 0.00 0.00 0.00 3.56
8760 14221 2.932614 CCTTGACATCTTACTTGAGGCG 59.067 50.000 0.00 0.00 0.00 5.52
8768 14229 1.732259 CCACACGCCTTGACATCTTAC 59.268 52.381 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.