Multiple sequence alignment - TraesCS5D01G247500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G247500 chr5D 100.000 3022 0 0 1 3022 354890106 354893127 0.000000e+00 5581.0
1 TraesCS5D01G247500 chr5D 85.678 1166 101 30 708 1811 354031826 354030665 0.000000e+00 1168.0
2 TraesCS5D01G247500 chr5D 80.134 599 73 34 1138 1719 354836973 354837542 3.630000e-109 405.0
3 TraesCS5D01G247500 chr5D 90.612 245 18 4 2780 3020 311610262 311610019 1.350000e-83 320.0
4 TraesCS5D01G247500 chr5D 91.667 84 7 0 600 683 170674692 170674609 1.900000e-22 117.0
5 TraesCS5D01G247500 chr5D 82.353 68 10 2 1834 1900 354892005 354891939 1.170000e-04 58.4
6 TraesCS5D01G247500 chr5A 91.702 1892 98 20 694 2549 457003384 457005252 0.000000e+00 2569.0
7 TraesCS5D01G247500 chr5A 86.833 1162 93 29 707 1813 454817469 454816313 0.000000e+00 1243.0
8 TraesCS5D01G247500 chr5A 78.825 732 87 36 1034 1737 456974799 456975490 5.990000e-117 431.0
9 TraesCS5D01G247500 chr5A 88.372 344 13 14 1 322 457002982 457003320 3.650000e-104 388.0
10 TraesCS5D01G247500 chr5A 91.358 243 17 3 2781 3020 195578499 195578258 2.250000e-86 329.0
11 TraesCS5D01G247500 chr5A 78.242 455 39 23 10 424 454820661 454820227 1.400000e-58 237.0
12 TraesCS5D01G247500 chr5A 91.209 91 7 1 2545 2634 457054674 457054764 4.090000e-24 122.0
13 TraesCS5D01G247500 chr5B 90.385 1248 83 16 694 1906 419643973 419645218 0.000000e+00 1605.0
14 TraesCS5D01G247500 chr5B 85.320 1158 104 30 708 1811 418374974 418373829 0.000000e+00 1136.0
15 TraesCS5D01G247500 chr5B 94.304 316 13 1 2209 2524 419645444 419645754 2.110000e-131 479.0
16 TraesCS5D01G247500 chr5B 85.628 494 21 15 25 471 419643498 419643988 9.810000e-130 473.0
17 TraesCS5D01G247500 chr5B 90.909 242 19 3 2781 3020 306404214 306403974 3.760000e-84 322.0
18 TraesCS5D01G247500 chr5B 79.765 425 50 24 1308 1719 419620291 419620692 2.970000e-70 276.0
19 TraesCS5D01G247500 chr5B 85.500 200 11 13 36 227 418377587 418377398 3.070000e-45 193.0
20 TraesCS5D01G247500 chr5B 93.077 130 9 0 471 600 702896901 702896772 1.110000e-44 191.0
21 TraesCS5D01G247500 chr5B 83.607 183 15 10 246 424 418377344 418377173 1.120000e-34 158.0
22 TraesCS5D01G247500 chr5B 97.059 34 1 0 1995 2028 419645282 419645315 1.170000e-04 58.4
23 TraesCS5D01G247500 chr7A 91.701 241 18 2 2781 3020 101842434 101842195 1.740000e-87 333.0
24 TraesCS5D01G247500 chr3B 91.393 244 16 3 2781 3020 463090858 463091100 2.250000e-86 329.0
25 TraesCS5D01G247500 chr2A 91.322 242 18 3 2781 3020 721448683 721448443 8.080000e-86 327.0
26 TraesCS5D01G247500 chr2A 90.698 129 12 0 472 600 642906528 642906400 4.010000e-39 172.0
27 TraesCS5D01G247500 chr6D 92.174 230 15 3 2780 3008 10027849 10028076 3.760000e-84 322.0
28 TraesCS5D01G247500 chr6D 90.909 242 19 3 2781 3020 44931217 44930977 3.760000e-84 322.0
29 TraesCS5D01G247500 chr3D 90.535 243 19 3 2781 3020 416138937 416139178 4.860000e-83 318.0
30 TraesCS5D01G247500 chr3D 89.922 129 13 0 472 600 313821276 313821148 1.860000e-37 167.0
31 TraesCS5D01G247500 chr3A 84.434 212 30 3 472 680 81691937 81691726 3.950000e-49 206.0
32 TraesCS5D01G247500 chrUn 85.955 178 17 4 474 649 38393893 38394064 1.850000e-42 183.0
33 TraesCS5D01G247500 chr2B 89.922 129 13 0 472 600 92497470 92497598 1.860000e-37 167.0
34 TraesCS5D01G247500 chr1B 89.922 129 13 0 472 600 433138149 433138021 1.860000e-37 167.0
35 TraesCS5D01G247500 chr1A 88.971 136 13 2 467 600 223987684 223987819 1.860000e-37 167.0
36 TraesCS5D01G247500 chr6A 89.313 131 14 0 470 600 552710915 552711045 6.700000e-37 165.0
37 TraesCS5D01G247500 chr6A 92.593 81 6 0 600 680 12297603 12297683 1.900000e-22 117.0
38 TraesCS5D01G247500 chr6B 96.154 78 3 0 603 680 37072719 37072642 8.790000e-26 128.0
39 TraesCS5D01G247500 chr7B 94.872 78 4 0 603 680 393643396 393643319 4.090000e-24 122.0
40 TraesCS5D01G247500 chr1D 94.872 78 4 0 603 680 491667320 491667243 4.090000e-24 122.0
41 TraesCS5D01G247500 chr7D 93.590 78 5 0 603 680 548022498 548022421 1.900000e-22 117.0
42 TraesCS5D01G247500 chr4A 92.593 81 6 0 600 680 718720213 718720293 1.900000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G247500 chr5D 354890106 354893127 3021 False 5581.000000 5581 100.0000 1 3022 1 chr5D.!!$F2 3021
1 TraesCS5D01G247500 chr5D 354030665 354031826 1161 True 1168.000000 1168 85.6780 708 1811 1 chr5D.!!$R3 1103
2 TraesCS5D01G247500 chr5D 354836973 354837542 569 False 405.000000 405 80.1340 1138 1719 1 chr5D.!!$F1 581
3 TraesCS5D01G247500 chr5A 457002982 457005252 2270 False 1478.500000 2569 90.0370 1 2549 2 chr5A.!!$F3 2548
4 TraesCS5D01G247500 chr5A 454816313 454820661 4348 True 740.000000 1243 82.5375 10 1813 2 chr5A.!!$R2 1803
5 TraesCS5D01G247500 chr5A 456974799 456975490 691 False 431.000000 431 78.8250 1034 1737 1 chr5A.!!$F1 703
6 TraesCS5D01G247500 chr5B 419643498 419645754 2256 False 653.850000 1605 91.8440 25 2524 4 chr5B.!!$F2 2499
7 TraesCS5D01G247500 chr5B 418373829 418377587 3758 True 495.666667 1136 84.8090 36 1811 3 chr5B.!!$R3 1775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 2784 0.033504 TCAGTCTTTCGGTGGTGCTC 59.966 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2572 5340 0.249489 CCTAGTACATGCGAGGGTGC 60.249 60.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 314 2.508439 ATACGCGCGTGGTCAAGG 60.508 61.111 42.78 8.82 0.00 3.61
389 482 0.396435 TGGTCGATGCTCTGTTTGGT 59.604 50.000 0.00 0.00 0.00 3.67
421 526 1.536766 TGCGCTTTCAGTCCTTCATTG 59.463 47.619 9.73 0.00 0.00 2.82
424 529 2.160417 CGCTTTCAGTCCTTCATTGTCC 59.840 50.000 0.00 0.00 0.00 4.02
425 530 3.416156 GCTTTCAGTCCTTCATTGTCCT 58.584 45.455 0.00 0.00 0.00 3.85
426 531 4.579869 GCTTTCAGTCCTTCATTGTCCTA 58.420 43.478 0.00 0.00 0.00 2.94
472 2630 5.818136 TGTTTAGCATGACTGGAATAAGC 57.182 39.130 0.00 0.00 0.00 3.09
473 2631 4.332543 TGTTTAGCATGACTGGAATAAGCG 59.667 41.667 0.00 0.00 0.00 4.68
474 2632 2.988010 AGCATGACTGGAATAAGCGA 57.012 45.000 0.00 0.00 0.00 4.93
476 2634 2.939103 AGCATGACTGGAATAAGCGAAC 59.061 45.455 0.00 0.00 0.00 3.95
477 2635 2.032178 GCATGACTGGAATAAGCGAACC 59.968 50.000 0.00 0.00 0.00 3.62
478 2636 3.270027 CATGACTGGAATAAGCGAACCA 58.730 45.455 0.00 0.00 0.00 3.67
480 2638 3.950397 TGACTGGAATAAGCGAACCAAT 58.050 40.909 0.00 0.00 31.85 3.16
481 2639 5.092554 TGACTGGAATAAGCGAACCAATA 57.907 39.130 0.00 0.00 31.85 1.90
482 2640 5.680619 TGACTGGAATAAGCGAACCAATAT 58.319 37.500 0.00 0.00 31.85 1.28
483 2641 5.527214 TGACTGGAATAAGCGAACCAATATG 59.473 40.000 0.00 0.00 31.85 1.78
484 2642 5.437060 ACTGGAATAAGCGAACCAATATGT 58.563 37.500 0.00 0.00 31.85 2.29
485 2643 5.296780 ACTGGAATAAGCGAACCAATATGTG 59.703 40.000 0.00 0.00 31.85 3.21
500 2658 6.624352 CAATATGTGGTTGGATGGTTAGAG 57.376 41.667 0.00 0.00 0.00 2.43
501 2659 2.489938 TGTGGTTGGATGGTTAGAGC 57.510 50.000 0.00 0.00 0.00 4.09
503 2661 1.066430 GTGGTTGGATGGTTAGAGCGA 60.066 52.381 0.00 0.00 0.00 4.93
504 2662 1.837439 TGGTTGGATGGTTAGAGCGAT 59.163 47.619 0.00 0.00 0.00 4.58
507 2665 3.270877 GTTGGATGGTTAGAGCGATTGT 58.729 45.455 0.00 0.00 0.00 2.71
508 2666 2.905075 TGGATGGTTAGAGCGATTGTG 58.095 47.619 0.00 0.00 0.00 3.33
509 2667 2.213499 GGATGGTTAGAGCGATTGTGG 58.787 52.381 0.00 0.00 0.00 4.17
510 2668 2.420129 GGATGGTTAGAGCGATTGTGGT 60.420 50.000 0.00 0.00 0.00 4.16
511 2669 3.181469 GGATGGTTAGAGCGATTGTGGTA 60.181 47.826 0.00 0.00 0.00 3.25
513 2671 4.054780 TGGTTAGAGCGATTGTGGTATC 57.945 45.455 0.00 0.00 0.00 2.24
518 2676 2.766263 AGAGCGATTGTGGTATCCTCAA 59.234 45.455 5.89 5.89 40.51 3.02
520 2678 1.940613 GCGATTGTGGTATCCTCAACC 59.059 52.381 5.60 0.00 39.34 3.77
521 2679 2.561569 CGATTGTGGTATCCTCAACCC 58.438 52.381 5.60 1.81 39.34 4.11
526 2684 2.505407 TGTGGTATCCTCAACCCATCAG 59.495 50.000 0.00 0.00 36.06 2.90
545 2703 3.567478 AGGGTACAAATCCTGATGCTC 57.433 47.619 0.00 0.00 31.11 4.26
546 2704 2.158900 AGGGTACAAATCCTGATGCTCG 60.159 50.000 0.00 0.00 31.11 5.03
550 2708 2.372264 ACAAATCCTGATGCTCGCATT 58.628 42.857 5.79 0.00 36.70 3.56
551 2709 2.756760 ACAAATCCTGATGCTCGCATTT 59.243 40.909 5.79 0.00 36.70 2.32
562 2722 5.300034 TGATGCTCGCATTTATTCCTGAATT 59.700 36.000 5.79 0.00 36.70 2.17
564 2724 6.691754 TGCTCGCATTTATTCCTGAATTTA 57.308 33.333 0.00 0.00 32.50 1.40
566 2726 7.715657 TGCTCGCATTTATTCCTGAATTTATT 58.284 30.769 0.00 0.00 32.50 1.40
567 2727 8.196771 TGCTCGCATTTATTCCTGAATTTATTT 58.803 29.630 0.00 0.00 32.50 1.40
568 2728 9.034544 GCTCGCATTTATTCCTGAATTTATTTT 57.965 29.630 0.00 0.00 32.50 1.82
586 2746 5.925189 ATTTTAAAATTTCCGACGATGCG 57.075 34.783 7.64 0.00 0.00 4.73
587 2747 2.445453 TAAAATTTCCGACGATGCGC 57.555 45.000 0.00 0.00 0.00 6.09
588 2748 0.519519 AAAATTTCCGACGATGCGCA 59.480 45.000 14.96 14.96 0.00 6.09
589 2749 0.732571 AAATTTCCGACGATGCGCAT 59.267 45.000 25.66 25.66 0.00 4.73
590 2750 0.732571 AATTTCCGACGATGCGCATT 59.267 45.000 26.12 9.76 0.00 3.56
591 2751 0.304705 ATTTCCGACGATGCGCATTC 59.695 50.000 26.12 17.86 0.00 2.67
592 2752 1.016653 TTTCCGACGATGCGCATTCA 61.017 50.000 26.12 0.96 0.00 2.57
593 2753 1.420641 TTCCGACGATGCGCATTCAG 61.421 55.000 26.12 20.26 0.00 3.02
594 2754 2.167219 CCGACGATGCGCATTCAGT 61.167 57.895 26.12 23.26 0.00 3.41
595 2755 1.012998 CGACGATGCGCATTCAGTG 60.013 57.895 26.12 14.19 0.00 3.66
596 2756 1.349627 GACGATGCGCATTCAGTGG 59.650 57.895 26.12 6.36 0.00 4.00
597 2757 2.040213 GACGATGCGCATTCAGTGGG 62.040 60.000 26.12 10.22 43.21 4.61
598 2758 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
599 2759 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
600 2760 2.056481 GATGCGCATTCAGTGGGAGC 62.056 60.000 26.12 3.25 43.02 4.70
602 2762 2.758089 GCGCATTCAGTGGGAGCTG 61.758 63.158 0.30 0.00 43.02 4.24
603 2763 2.110967 CGCATTCAGTGGGAGCTGG 61.111 63.158 0.00 0.00 43.02 4.85
604 2764 2.413142 GCATTCAGTGGGAGCTGGC 61.413 63.158 0.00 0.00 37.12 4.85
605 2765 1.302285 CATTCAGTGGGAGCTGGCT 59.698 57.895 0.00 0.00 37.12 4.75
606 2766 0.747283 CATTCAGTGGGAGCTGGCTC 60.747 60.000 13.56 13.56 42.04 4.70
608 2768 1.834856 TTCAGTGGGAGCTGGCTCAG 61.835 60.000 21.75 0.00 44.40 3.35
609 2769 2.203907 AGTGGGAGCTGGCTCAGT 60.204 61.111 21.75 5.54 44.40 3.41
610 2770 2.267324 GTGGGAGCTGGCTCAGTC 59.733 66.667 21.75 12.13 44.40 3.51
611 2771 2.121385 TGGGAGCTGGCTCAGTCT 59.879 61.111 21.75 0.18 44.40 3.24
612 2772 1.537397 TGGGAGCTGGCTCAGTCTT 60.537 57.895 21.75 0.00 44.40 3.01
614 2774 0.392327 GGGAGCTGGCTCAGTCTTTC 60.392 60.000 21.75 4.90 44.40 2.62
616 2776 0.739112 GAGCTGGCTCAGTCTTTCGG 60.739 60.000 16.55 0.00 42.31 4.30
617 2777 1.004440 GCTGGCTCAGTCTTTCGGT 60.004 57.895 4.45 0.00 33.43 4.69
618 2778 1.294659 GCTGGCTCAGTCTTTCGGTG 61.295 60.000 4.45 0.00 33.43 4.94
619 2779 0.671781 CTGGCTCAGTCTTTCGGTGG 60.672 60.000 0.00 0.00 0.00 4.61
621 2781 0.951040 GGCTCAGTCTTTCGGTGGTG 60.951 60.000 0.00 0.00 0.00 4.17
623 2783 0.034059 CTCAGTCTTTCGGTGGTGCT 59.966 55.000 0.00 0.00 0.00 4.40
624 2784 0.033504 TCAGTCTTTCGGTGGTGCTC 59.966 55.000 0.00 0.00 0.00 4.26
626 2786 0.687354 AGTCTTTCGGTGGTGCTCAT 59.313 50.000 0.00 0.00 0.00 2.90
628 2788 2.093973 AGTCTTTCGGTGGTGCTCATAG 60.094 50.000 0.00 0.00 0.00 2.23
629 2789 1.207089 TCTTTCGGTGGTGCTCATAGG 59.793 52.381 0.00 0.00 0.00 2.57
630 2790 0.251916 TTTCGGTGGTGCTCATAGGG 59.748 55.000 0.00 0.00 0.00 3.53
631 2791 1.622607 TTCGGTGGTGCTCATAGGGG 61.623 60.000 0.00 0.00 0.00 4.79
632 2792 2.367202 CGGTGGTGCTCATAGGGGT 61.367 63.158 0.00 0.00 0.00 4.95
633 2793 1.046472 CGGTGGTGCTCATAGGGGTA 61.046 60.000 0.00 0.00 0.00 3.69
634 2794 1.209621 GGTGGTGCTCATAGGGGTAA 58.790 55.000 0.00 0.00 0.00 2.85
635 2795 1.141053 GGTGGTGCTCATAGGGGTAAG 59.859 57.143 0.00 0.00 0.00 2.34
636 2796 2.116238 GTGGTGCTCATAGGGGTAAGA 58.884 52.381 0.00 0.00 0.00 2.10
637 2797 2.706190 GTGGTGCTCATAGGGGTAAGAT 59.294 50.000 0.00 0.00 0.00 2.40
638 2798 2.705658 TGGTGCTCATAGGGGTAAGATG 59.294 50.000 0.00 0.00 0.00 2.90
640 2800 3.495100 GGTGCTCATAGGGGTAAGATGTG 60.495 52.174 0.00 0.00 0.00 3.21
641 2801 2.104792 TGCTCATAGGGGTAAGATGTGC 59.895 50.000 0.00 0.00 33.82 4.57
642 2802 2.868044 GCTCATAGGGGTAAGATGTGCG 60.868 54.545 0.00 0.00 0.00 5.34
643 2803 2.365617 CTCATAGGGGTAAGATGTGCGT 59.634 50.000 0.00 0.00 0.00 5.24
644 2804 2.102420 TCATAGGGGTAAGATGTGCGTG 59.898 50.000 0.00 0.00 0.00 5.34
647 2807 0.321298 GGGGTAAGATGTGCGTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
648 2808 1.066716 GGGGTAAGATGTGCGTGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
649 2809 1.997606 GGGTAAGATGTGCGTGTGTAC 59.002 52.381 0.00 0.00 0.00 2.90
650 2810 2.610976 GGGTAAGATGTGCGTGTGTACA 60.611 50.000 0.00 0.00 44.99 2.90
659 2819 4.173256 TGTGCGTGTGTACATTCATAGAG 58.827 43.478 0.00 0.00 35.67 2.43
660 2820 3.551890 GTGCGTGTGTACATTCATAGAGG 59.448 47.826 0.00 0.00 0.00 3.69
661 2821 3.194755 TGCGTGTGTACATTCATAGAGGT 59.805 43.478 0.00 0.00 0.00 3.85
662 2822 3.551890 GCGTGTGTACATTCATAGAGGTG 59.448 47.826 0.00 0.00 0.00 4.00
663 2823 4.676986 GCGTGTGTACATTCATAGAGGTGA 60.677 45.833 0.00 0.00 0.00 4.02
664 2824 5.037385 CGTGTGTACATTCATAGAGGTGAG 58.963 45.833 0.00 0.00 0.00 3.51
666 2826 5.807520 GTGTGTACATTCATAGAGGTGAGTG 59.192 44.000 0.00 0.00 40.46 3.51
668 2828 6.661805 TGTGTACATTCATAGAGGTGAGTGTA 59.338 38.462 0.00 7.79 44.17 2.90
669 2829 7.342026 TGTGTACATTCATAGAGGTGAGTGTAT 59.658 37.037 13.02 0.00 46.21 2.29
670 2830 7.649705 GTGTACATTCATAGAGGTGAGTGTATG 59.350 40.741 13.02 1.65 46.21 2.39
672 2832 3.990318 TCATAGAGGTGAGTGTATGCG 57.010 47.619 0.00 0.00 0.00 4.73
673 2833 2.034685 TCATAGAGGTGAGTGTATGCGC 59.965 50.000 0.00 0.00 0.00 6.09
674 2834 0.380733 TAGAGGTGAGTGTATGCGCG 59.619 55.000 0.00 0.00 0.00 6.86
675 2835 1.153823 GAGGTGAGTGTATGCGCGT 60.154 57.895 8.43 7.55 0.00 6.01
677 2837 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
680 2840 1.255342 GTGAGTGTATGCGCGTGTATG 59.745 52.381 13.61 0.00 0.00 2.39
681 2841 1.135228 TGAGTGTATGCGCGTGTATGT 60.135 47.619 13.61 0.00 0.00 2.29
1009 3680 2.930887 GCACAAGCAACTCGACCAGATA 60.931 50.000 0.00 0.00 41.58 1.98
1025 3696 3.007290 CCAGATAGATCGATCCCTTGCAA 59.993 47.826 21.66 0.00 0.00 4.08
1026 3697 4.244066 CAGATAGATCGATCCCTTGCAAG 58.756 47.826 21.66 19.93 0.00 4.01
1236 3927 0.508641 GTAACGGCGAGCATGCTATG 59.491 55.000 22.74 17.42 34.52 2.23
1306 4023 1.246056 ATGCCTTGCGTTGATGCTGT 61.246 50.000 0.00 0.00 35.36 4.40
1414 4146 3.319198 GGTCCTTCACCCCGCTCA 61.319 66.667 0.00 0.00 39.69 4.26
1479 4217 1.223211 GGAGCAGAAGGAAGAGGCC 59.777 63.158 0.00 0.00 0.00 5.19
1827 4578 7.246027 AGAACCTTAATACCCTGTTTGGATTT 58.754 34.615 0.00 0.00 38.35 2.17
1830 4581 5.128663 CCTTAATACCCTGTTTGGATTTGGG 59.871 44.000 0.00 0.00 43.26 4.12
1851 4602 2.687700 ATGAATTCTGCGTGCTCTCT 57.312 45.000 7.05 0.00 0.00 3.10
1872 4623 8.690203 TCTCTGGTATTCAGTTCAAATTTGAA 57.310 30.769 26.01 26.01 43.76 2.69
1929 4695 2.201732 TGAGACGTTTCAGAGTGTTGC 58.798 47.619 4.39 0.00 0.00 4.17
1944 4711 1.014352 GTTGCAGTGGTCTCGTTGTT 58.986 50.000 0.00 0.00 0.00 2.83
1988 4755 4.143094 GCAGTTTATCTCCAAGTGTTCGAC 60.143 45.833 0.00 0.00 0.00 4.20
2034 4801 2.549329 TGCATGTACTTTCAGTGCACTG 59.451 45.455 36.07 36.07 43.36 3.66
2065 4832 0.179163 GAATTTGCTTTCCGGCTCCG 60.179 55.000 0.00 0.48 39.44 4.63
2075 4842 2.202623 CGGCTCCGTCTGCTGTAC 60.203 66.667 0.00 0.00 34.35 2.90
2089 4857 2.103432 TGCTGTACCTTCTGAAAACGGA 59.897 45.455 9.13 0.00 0.00 4.69
2110 4878 5.741388 GATTTCTATCCATGCAGTTCGTT 57.259 39.130 0.00 0.00 0.00 3.85
2111 4879 4.944962 TTTCTATCCATGCAGTTCGTTG 57.055 40.909 0.00 0.00 0.00 4.10
2112 4880 3.610040 TCTATCCATGCAGTTCGTTGT 57.390 42.857 0.00 0.00 0.00 3.32
2113 4881 3.937814 TCTATCCATGCAGTTCGTTGTT 58.062 40.909 0.00 0.00 0.00 2.83
2114 4882 3.932710 TCTATCCATGCAGTTCGTTGTTC 59.067 43.478 0.00 0.00 0.00 3.18
2115 4883 1.234821 TCCATGCAGTTCGTTGTTCC 58.765 50.000 0.00 0.00 0.00 3.62
2116 4884 0.950836 CCATGCAGTTCGTTGTTCCA 59.049 50.000 0.00 0.00 0.00 3.53
2117 4885 1.334960 CCATGCAGTTCGTTGTTCCAC 60.335 52.381 0.00 0.00 0.00 4.02
2118 4886 1.603802 CATGCAGTTCGTTGTTCCACT 59.396 47.619 0.00 0.00 0.00 4.00
2119 4887 1.745232 TGCAGTTCGTTGTTCCACTT 58.255 45.000 0.00 0.00 0.00 3.16
2120 4888 1.400142 TGCAGTTCGTTGTTCCACTTG 59.600 47.619 0.00 0.00 0.00 3.16
2121 4889 1.400494 GCAGTTCGTTGTTCCACTTGT 59.600 47.619 0.00 0.00 0.00 3.16
2127 4895 2.360483 TCGTTGTTCCACTTGTACGGTA 59.640 45.455 0.00 0.00 0.00 4.02
2400 5168 3.704566 TCTGGGCAAATCGATACAGTACT 59.295 43.478 0.00 0.00 0.00 2.73
2401 5169 3.792401 TGGGCAAATCGATACAGTACTG 58.208 45.455 21.44 21.44 0.00 2.74
2402 5170 3.196901 TGGGCAAATCGATACAGTACTGT 59.803 43.478 30.13 30.13 46.87 3.55
2443 5211 0.249657 GAATGCAGAGAGCCGGGTAG 60.250 60.000 5.91 0.00 44.83 3.18
2452 5220 3.633116 GCCGGGTAGTGTGTGGGT 61.633 66.667 2.18 0.00 0.00 4.51
2535 5303 0.818296 GTAGCTCTGGTCACGGTGAT 59.182 55.000 14.78 0.00 0.00 3.06
2551 5319 4.506886 GGTGATCCGAATACTGGACTAG 57.493 50.000 0.00 0.00 38.60 2.57
2552 5320 3.256136 GGTGATCCGAATACTGGACTAGG 59.744 52.174 0.00 0.00 38.60 3.02
2553 5321 4.142790 GTGATCCGAATACTGGACTAGGA 58.857 47.826 0.00 0.00 38.60 2.94
2554 5322 4.023021 GTGATCCGAATACTGGACTAGGAC 60.023 50.000 0.00 0.00 38.60 3.85
2555 5323 3.947612 TCCGAATACTGGACTAGGACT 57.052 47.619 0.00 0.00 0.00 3.85
2556 5324 5.072736 TGATCCGAATACTGGACTAGGACTA 59.927 44.000 0.00 0.00 38.60 2.59
2557 5325 4.712476 TCCGAATACTGGACTAGGACTAC 58.288 47.826 0.00 0.00 0.00 2.73
2558 5326 4.411540 TCCGAATACTGGACTAGGACTACT 59.588 45.833 0.00 0.00 0.00 2.57
2559 5327 5.604231 TCCGAATACTGGACTAGGACTACTA 59.396 44.000 0.00 0.00 0.00 1.82
2568 5336 3.488778 CTAGGACTACTAGCCCTCGAA 57.511 52.381 0.00 0.00 42.51 3.71
2569 5337 2.351706 AGGACTACTAGCCCTCGAAG 57.648 55.000 0.00 0.00 0.00 3.79
2570 5338 1.565288 AGGACTACTAGCCCTCGAAGT 59.435 52.381 0.00 0.00 0.00 3.01
2571 5339 1.948834 GGACTACTAGCCCTCGAAGTC 59.051 57.143 1.80 1.80 34.08 3.01
2572 5340 1.598601 GACTACTAGCCCTCGAAGTCG 59.401 57.143 0.00 0.00 41.45 4.18
2573 5341 0.308376 CTACTAGCCCTCGAAGTCGC 59.692 60.000 0.00 0.00 39.60 5.19
2574 5342 0.393402 TACTAGCCCTCGAAGTCGCA 60.393 55.000 0.00 0.00 39.60 5.10
2575 5343 1.226717 CTAGCCCTCGAAGTCGCAC 60.227 63.158 0.00 0.00 39.60 5.34
2576 5344 2.615262 CTAGCCCTCGAAGTCGCACC 62.615 65.000 0.00 0.00 39.60 5.01
2578 5346 3.382832 CCCTCGAAGTCGCACCCT 61.383 66.667 0.00 0.00 39.60 4.34
2579 5347 2.182030 CCTCGAAGTCGCACCCTC 59.818 66.667 0.00 0.00 39.60 4.30
2580 5348 2.202492 CTCGAAGTCGCACCCTCG 60.202 66.667 0.00 0.00 39.60 4.63
2581 5349 4.415332 TCGAAGTCGCACCCTCGC 62.415 66.667 0.00 0.00 39.60 5.03
2582 5350 4.717629 CGAAGTCGCACCCTCGCA 62.718 66.667 0.00 0.00 0.00 5.10
2583 5351 2.125512 GAAGTCGCACCCTCGCAT 60.126 61.111 0.00 0.00 0.00 4.73
2584 5352 2.434884 AAGTCGCACCCTCGCATG 60.435 61.111 0.00 0.00 0.00 4.06
2585 5353 3.240134 AAGTCGCACCCTCGCATGT 62.240 57.895 0.00 0.00 0.00 3.21
2586 5354 1.884075 AAGTCGCACCCTCGCATGTA 61.884 55.000 0.00 0.00 0.00 2.29
2587 5355 2.165301 GTCGCACCCTCGCATGTAC 61.165 63.158 0.00 0.00 0.00 2.90
2588 5356 2.184322 CGCACCCTCGCATGTACT 59.816 61.111 0.00 0.00 0.00 2.73
2589 5357 1.033202 TCGCACCCTCGCATGTACTA 61.033 55.000 0.00 0.00 0.00 1.82
2590 5358 0.595053 CGCACCCTCGCATGTACTAG 60.595 60.000 0.00 0.00 0.00 2.57
2591 5359 0.249489 GCACCCTCGCATGTACTAGG 60.249 60.000 0.00 0.00 0.00 3.02
2592 5360 1.112113 CACCCTCGCATGTACTAGGT 58.888 55.000 0.00 0.00 0.00 3.08
2593 5361 1.067212 CACCCTCGCATGTACTAGGTC 59.933 57.143 0.00 0.00 0.00 3.85
2594 5362 0.311165 CCCTCGCATGTACTAGGTCG 59.689 60.000 0.00 0.00 0.00 4.79
2595 5363 1.022735 CCTCGCATGTACTAGGTCGT 58.977 55.000 0.00 0.00 0.00 4.34
2596 5364 1.268589 CCTCGCATGTACTAGGTCGTG 60.269 57.143 0.00 0.00 0.00 4.35
2597 5365 1.669265 CTCGCATGTACTAGGTCGTGA 59.331 52.381 11.18 0.00 0.00 4.35
2598 5366 2.290916 CTCGCATGTACTAGGTCGTGAT 59.709 50.000 11.18 0.00 0.00 3.06
2599 5367 2.686405 TCGCATGTACTAGGTCGTGATT 59.314 45.455 11.18 0.00 0.00 2.57
2600 5368 2.789339 CGCATGTACTAGGTCGTGATTG 59.211 50.000 11.18 0.02 0.00 2.67
2601 5369 3.123804 GCATGTACTAGGTCGTGATTGG 58.876 50.000 11.18 0.00 0.00 3.16
2602 5370 2.953466 TGTACTAGGTCGTGATTGGC 57.047 50.000 0.00 0.00 0.00 4.52
2603 5371 2.453521 TGTACTAGGTCGTGATTGGCT 58.546 47.619 0.00 0.00 0.00 4.75
2604 5372 2.829720 TGTACTAGGTCGTGATTGGCTT 59.170 45.455 0.00 0.00 0.00 4.35
2605 5373 2.674796 ACTAGGTCGTGATTGGCTTC 57.325 50.000 0.00 0.00 0.00 3.86
2606 5374 1.207329 ACTAGGTCGTGATTGGCTTCC 59.793 52.381 0.00 0.00 0.00 3.46
2607 5375 1.207089 CTAGGTCGTGATTGGCTTCCA 59.793 52.381 0.00 0.00 0.00 3.53
2618 5386 3.719268 TTGGCTTCCAAAGAGATAGCA 57.281 42.857 0.00 0.00 40.92 3.49
2619 5387 3.719268 TGGCTTCCAAAGAGATAGCAA 57.281 42.857 0.00 0.00 33.60 3.91
2620 5388 4.032960 TGGCTTCCAAAGAGATAGCAAA 57.967 40.909 0.00 0.00 33.60 3.68
2621 5389 4.603131 TGGCTTCCAAAGAGATAGCAAAT 58.397 39.130 0.00 0.00 33.60 2.32
2622 5390 4.400251 TGGCTTCCAAAGAGATAGCAAATG 59.600 41.667 0.00 0.00 33.60 2.32
2623 5391 4.641989 GGCTTCCAAAGAGATAGCAAATGA 59.358 41.667 0.00 0.00 33.60 2.57
2624 5392 5.449725 GGCTTCCAAAGAGATAGCAAATGAC 60.450 44.000 0.00 0.00 33.60 3.06
2625 5393 5.124457 GCTTCCAAAGAGATAGCAAATGACA 59.876 40.000 0.00 0.00 0.00 3.58
2626 5394 6.677431 GCTTCCAAAGAGATAGCAAATGACAG 60.677 42.308 0.00 0.00 0.00 3.51
2627 5395 4.637534 TCCAAAGAGATAGCAAATGACAGC 59.362 41.667 0.00 0.00 0.00 4.40
2628 5396 4.397103 CCAAAGAGATAGCAAATGACAGCA 59.603 41.667 0.00 0.00 0.00 4.41
2629 5397 5.106038 CCAAAGAGATAGCAAATGACAGCAA 60.106 40.000 0.00 0.00 0.00 3.91
2630 5398 6.405508 CCAAAGAGATAGCAAATGACAGCAAT 60.406 38.462 0.00 0.00 0.00 3.56
2631 5399 7.201758 CCAAAGAGATAGCAAATGACAGCAATA 60.202 37.037 0.00 0.00 0.00 1.90
2632 5400 8.350722 CAAAGAGATAGCAAATGACAGCAATAT 58.649 33.333 0.00 0.00 0.00 1.28
2633 5401 7.436430 AGAGATAGCAAATGACAGCAATATG 57.564 36.000 0.00 0.00 0.00 1.78
2634 5402 6.010294 AGATAGCAAATGACAGCAATATGC 57.990 37.500 0.00 0.00 45.46 3.14
2649 5417 6.752335 GCAATATGCGATGCTTAATTTCAA 57.248 33.333 0.00 0.00 39.46 2.69
2650 5418 7.164226 GCAATATGCGATGCTTAATTTCAAA 57.836 32.000 0.00 0.00 39.46 2.69
2651 5419 7.790000 GCAATATGCGATGCTTAATTTCAAAT 58.210 30.769 0.00 0.00 39.46 2.32
2652 5420 7.948363 GCAATATGCGATGCTTAATTTCAAATC 59.052 33.333 0.00 0.00 39.46 2.17
2653 5421 8.970293 CAATATGCGATGCTTAATTTCAAATCA 58.030 29.630 0.00 0.00 0.00 2.57
2654 5422 9.531942 AATATGCGATGCTTAATTTCAAATCAA 57.468 25.926 0.00 0.00 0.00 2.57
2655 5423 7.830940 ATGCGATGCTTAATTTCAAATCAAA 57.169 28.000 0.00 0.00 0.00 2.69
2656 5424 7.649370 TGCGATGCTTAATTTCAAATCAAAA 57.351 28.000 0.00 0.00 0.00 2.44
2657 5425 7.508965 TGCGATGCTTAATTTCAAATCAAAAC 58.491 30.769 0.00 0.00 0.00 2.43
2658 5426 7.170489 TGCGATGCTTAATTTCAAATCAAAACA 59.830 29.630 0.00 0.00 0.00 2.83
2659 5427 8.008844 GCGATGCTTAATTTCAAATCAAAACAA 58.991 29.630 0.00 0.00 0.00 2.83
2660 5428 9.861138 CGATGCTTAATTTCAAATCAAAACAAA 57.139 25.926 0.00 0.00 0.00 2.83
2694 5462 3.810310 TTTTGCGGGTGAACAAAATCT 57.190 38.095 0.00 0.00 39.99 2.40
2695 5463 3.810310 TTTGCGGGTGAACAAAATCTT 57.190 38.095 0.00 0.00 33.06 2.40
2696 5464 2.791383 TGCGGGTGAACAAAATCTTG 57.209 45.000 0.00 0.00 38.61 3.02
2697 5465 2.302260 TGCGGGTGAACAAAATCTTGA 58.698 42.857 0.00 0.00 36.33 3.02
2698 5466 2.034053 TGCGGGTGAACAAAATCTTGAC 59.966 45.455 0.00 0.00 36.33 3.18
2699 5467 2.293399 GCGGGTGAACAAAATCTTGACT 59.707 45.455 0.00 0.00 36.33 3.41
2700 5468 3.243401 GCGGGTGAACAAAATCTTGACTT 60.243 43.478 0.00 0.00 36.33 3.01
2701 5469 4.290155 CGGGTGAACAAAATCTTGACTTG 58.710 43.478 0.00 0.00 36.33 3.16
2702 5470 4.036262 CGGGTGAACAAAATCTTGACTTGA 59.964 41.667 0.00 0.00 36.33 3.02
2703 5471 5.449862 CGGGTGAACAAAATCTTGACTTGAA 60.450 40.000 0.00 0.00 36.33 2.69
2704 5472 5.748630 GGGTGAACAAAATCTTGACTTGAAC 59.251 40.000 0.00 0.00 36.33 3.18
2705 5473 5.455525 GGTGAACAAAATCTTGACTTGAACG 59.544 40.000 0.00 0.00 36.33 3.95
2706 5474 6.255215 GTGAACAAAATCTTGACTTGAACGA 58.745 36.000 0.00 0.00 36.33 3.85
2707 5475 6.412072 GTGAACAAAATCTTGACTTGAACGAG 59.588 38.462 0.00 0.00 36.33 4.18
2708 5476 5.424121 ACAAAATCTTGACTTGAACGAGG 57.576 39.130 0.00 0.00 36.33 4.63
2709 5477 4.275936 ACAAAATCTTGACTTGAACGAGGG 59.724 41.667 0.00 0.00 36.33 4.30
2710 5478 4.351874 AAATCTTGACTTGAACGAGGGA 57.648 40.909 0.00 0.00 0.00 4.20
2711 5479 4.351874 AATCTTGACTTGAACGAGGGAA 57.648 40.909 0.00 0.00 0.00 3.97
2712 5480 3.830744 TCTTGACTTGAACGAGGGAAA 57.169 42.857 0.00 0.00 0.00 3.13
2713 5481 3.728845 TCTTGACTTGAACGAGGGAAAG 58.271 45.455 0.00 0.00 0.00 2.62
2714 5482 3.386726 TCTTGACTTGAACGAGGGAAAGA 59.613 43.478 0.00 0.00 0.00 2.52
2715 5483 3.107642 TGACTTGAACGAGGGAAAGAC 57.892 47.619 0.00 0.00 0.00 3.01
2716 5484 2.432874 TGACTTGAACGAGGGAAAGACA 59.567 45.455 0.00 0.00 0.00 3.41
2717 5485 2.801111 GACTTGAACGAGGGAAAGACAC 59.199 50.000 0.00 0.00 0.00 3.67
2718 5486 2.143925 CTTGAACGAGGGAAAGACACC 58.856 52.381 0.00 0.00 0.00 4.16
2719 5487 1.124780 TGAACGAGGGAAAGACACCA 58.875 50.000 0.00 0.00 0.00 4.17
2720 5488 1.487142 TGAACGAGGGAAAGACACCAA 59.513 47.619 0.00 0.00 0.00 3.67
2721 5489 2.092861 TGAACGAGGGAAAGACACCAAA 60.093 45.455 0.00 0.00 0.00 3.28
2722 5490 2.721425 ACGAGGGAAAGACACCAAAA 57.279 45.000 0.00 0.00 0.00 2.44
2723 5491 3.223674 ACGAGGGAAAGACACCAAAAT 57.776 42.857 0.00 0.00 0.00 1.82
2724 5492 3.146847 ACGAGGGAAAGACACCAAAATC 58.853 45.455 0.00 0.00 0.00 2.17
2725 5493 3.181443 ACGAGGGAAAGACACCAAAATCT 60.181 43.478 0.00 0.00 0.00 2.40
2726 5494 3.821033 CGAGGGAAAGACACCAAAATCTT 59.179 43.478 0.00 0.00 36.73 2.40
2727 5495 5.001232 CGAGGGAAAGACACCAAAATCTTA 58.999 41.667 0.00 0.00 34.01 2.10
2728 5496 5.472137 CGAGGGAAAGACACCAAAATCTTAA 59.528 40.000 0.00 0.00 34.01 1.85
2729 5497 6.151144 CGAGGGAAAGACACCAAAATCTTAAT 59.849 38.462 0.00 0.00 34.01 1.40
2730 5498 7.309194 CGAGGGAAAGACACCAAAATCTTAATT 60.309 37.037 0.00 0.00 34.01 1.40
2731 5499 8.262601 AGGGAAAGACACCAAAATCTTAATTT 57.737 30.769 0.00 0.00 34.01 1.82
2732 5500 8.367911 AGGGAAAGACACCAAAATCTTAATTTC 58.632 33.333 0.00 0.00 34.01 2.17
2733 5501 8.147704 GGGAAAGACACCAAAATCTTAATTTCA 58.852 33.333 0.00 0.00 34.01 2.69
2734 5502 9.196552 GGAAAGACACCAAAATCTTAATTTCAG 57.803 33.333 0.00 0.00 34.01 3.02
2735 5503 9.750125 GAAAGACACCAAAATCTTAATTTCAGT 57.250 29.630 0.00 0.00 34.01 3.41
2736 5504 9.533253 AAAGACACCAAAATCTTAATTTCAGTG 57.467 29.630 9.74 9.74 40.35 3.66
2737 5505 8.237811 AGACACCAAAATCTTAATTTCAGTGT 57.762 30.769 13.96 13.96 44.90 3.55
2738 5506 8.695456 AGACACCAAAATCTTAATTTCAGTGTT 58.305 29.630 14.69 7.26 43.68 3.32
2739 5507 8.647143 ACACCAAAATCTTAATTTCAGTGTTG 57.353 30.769 10.60 0.00 42.47 3.33
2740 5508 7.710475 ACACCAAAATCTTAATTTCAGTGTTGG 59.290 33.333 10.60 0.00 42.47 3.77
2741 5509 7.171337 CACCAAAATCTTAATTTCAGTGTTGGG 59.829 37.037 0.00 0.00 35.31 4.12
2742 5510 7.070571 ACCAAAATCTTAATTTCAGTGTTGGGA 59.929 33.333 0.00 0.00 33.93 4.37
2743 5511 7.384932 CCAAAATCTTAATTTCAGTGTTGGGAC 59.615 37.037 0.00 0.00 33.93 4.46
2744 5512 5.880054 ATCTTAATTTCAGTGTTGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
2745 5513 4.710324 TCTTAATTTCAGTGTTGGGACGT 58.290 39.130 0.00 0.00 0.00 4.34
2746 5514 4.513692 TCTTAATTTCAGTGTTGGGACGTG 59.486 41.667 0.00 0.00 0.00 4.49
2747 5515 2.341846 ATTTCAGTGTTGGGACGTGT 57.658 45.000 0.00 0.00 0.00 4.49
2748 5516 1.658994 TTTCAGTGTTGGGACGTGTC 58.341 50.000 0.00 0.00 0.00 3.67
2761 5529 2.922779 CGTGTCCGTTTTAAGCCCT 58.077 52.632 0.00 0.00 0.00 5.19
2762 5530 1.232119 CGTGTCCGTTTTAAGCCCTT 58.768 50.000 0.00 0.00 0.00 3.95
2763 5531 2.415776 CGTGTCCGTTTTAAGCCCTTA 58.584 47.619 0.00 0.00 0.00 2.69
2764 5532 3.004862 CGTGTCCGTTTTAAGCCCTTAT 58.995 45.455 0.00 0.00 0.00 1.73
2765 5533 3.437741 CGTGTCCGTTTTAAGCCCTTATT 59.562 43.478 0.00 0.00 0.00 1.40
2766 5534 4.083164 CGTGTCCGTTTTAAGCCCTTATTT 60.083 41.667 0.00 0.00 0.00 1.40
2767 5535 5.158494 GTGTCCGTTTTAAGCCCTTATTTG 58.842 41.667 0.00 0.00 0.00 2.32
2768 5536 4.828387 TGTCCGTTTTAAGCCCTTATTTGT 59.172 37.500 0.00 0.00 0.00 2.83
2769 5537 5.302313 TGTCCGTTTTAAGCCCTTATTTGTT 59.698 36.000 0.00 0.00 0.00 2.83
2770 5538 6.183360 TGTCCGTTTTAAGCCCTTATTTGTTT 60.183 34.615 0.00 0.00 0.00 2.83
2771 5539 6.144886 GTCCGTTTTAAGCCCTTATTTGTTTG 59.855 38.462 0.00 0.00 0.00 2.93
2772 5540 5.986741 CCGTTTTAAGCCCTTATTTGTTTGT 59.013 36.000 0.00 0.00 0.00 2.83
2773 5541 6.144886 CCGTTTTAAGCCCTTATTTGTTTGTC 59.855 38.462 0.00 0.00 0.00 3.18
2774 5542 6.144886 CGTTTTAAGCCCTTATTTGTTTGTCC 59.855 38.462 0.00 0.00 0.00 4.02
2775 5543 6.732896 TTTAAGCCCTTATTTGTTTGTCCA 57.267 33.333 0.00 0.00 0.00 4.02
2776 5544 6.926630 TTAAGCCCTTATTTGTTTGTCCAT 57.073 33.333 0.00 0.00 0.00 3.41
2777 5545 4.806640 AGCCCTTATTTGTTTGTCCATG 57.193 40.909 0.00 0.00 0.00 3.66
2778 5546 3.055891 AGCCCTTATTTGTTTGTCCATGC 60.056 43.478 0.00 0.00 0.00 4.06
2779 5547 3.306641 GCCCTTATTTGTTTGTCCATGCA 60.307 43.478 0.00 0.00 0.00 3.96
2780 5548 4.497300 CCCTTATTTGTTTGTCCATGCAG 58.503 43.478 0.00 0.00 0.00 4.41
2781 5549 4.497300 CCTTATTTGTTTGTCCATGCAGG 58.503 43.478 0.00 0.00 39.47 4.85
2782 5550 4.497300 CTTATTTGTTTGTCCATGCAGGG 58.503 43.478 12.23 12.23 38.24 4.45
2783 5551 2.079170 TTTGTTTGTCCATGCAGGGA 57.921 45.000 17.85 17.85 38.24 4.20
2784 5552 2.079170 TTGTTTGTCCATGCAGGGAA 57.921 45.000 23.86 9.91 39.05 3.97
2785 5553 2.307496 TGTTTGTCCATGCAGGGAAT 57.693 45.000 23.86 0.00 39.05 3.01
2786 5554 1.894466 TGTTTGTCCATGCAGGGAATG 59.106 47.619 23.86 0.00 39.05 2.67
2787 5555 1.895131 GTTTGTCCATGCAGGGAATGT 59.105 47.619 23.86 0.00 39.05 2.71
2788 5556 3.088532 GTTTGTCCATGCAGGGAATGTA 58.911 45.455 23.86 6.24 39.05 2.29
2789 5557 3.668141 TTGTCCATGCAGGGAATGTAT 57.332 42.857 23.86 0.00 39.05 2.29
2790 5558 3.213206 TGTCCATGCAGGGAATGTATC 57.787 47.619 23.86 9.17 39.05 2.24
2800 5568 1.523758 GGAATGTATCCGGTGCATCC 58.476 55.000 0.00 0.00 38.79 3.51
2801 5569 1.202758 GGAATGTATCCGGTGCATCCA 60.203 52.381 0.00 0.00 38.79 3.41
2802 5570 1.873591 GAATGTATCCGGTGCATCCAC 59.126 52.381 0.00 0.00 41.32 4.02
2803 5571 0.836606 ATGTATCCGGTGCATCCACA 59.163 50.000 0.00 0.00 43.88 4.17
2804 5572 0.107897 TGTATCCGGTGCATCCACAC 60.108 55.000 0.00 0.00 43.88 3.82
2805 5573 0.178068 GTATCCGGTGCATCCACACT 59.822 55.000 0.00 0.00 43.88 3.55
2806 5574 0.908910 TATCCGGTGCATCCACACTT 59.091 50.000 0.00 0.00 43.88 3.16
2807 5575 0.677731 ATCCGGTGCATCCACACTTG 60.678 55.000 0.00 0.00 43.88 3.16
2808 5576 1.600636 CCGGTGCATCCACACTTGT 60.601 57.895 0.00 0.00 43.88 3.16
2809 5577 1.575922 CGGTGCATCCACACTTGTG 59.424 57.895 2.13 2.13 43.88 3.33
2819 5587 3.532896 ACACTTGTGATGCTACCGG 57.467 52.632 0.00 0.00 0.00 5.28
2820 5588 0.685097 ACACTTGTGATGCTACCGGT 59.315 50.000 13.98 13.98 0.00 5.28
2821 5589 1.078709 CACTTGTGATGCTACCGGTG 58.921 55.000 19.93 8.61 0.00 4.94
2822 5590 0.673644 ACTTGTGATGCTACCGGTGC 60.674 55.000 19.93 19.04 0.00 5.01
2823 5591 0.673333 CTTGTGATGCTACCGGTGCA 60.673 55.000 26.46 26.46 44.95 4.57
2824 5592 0.953471 TTGTGATGCTACCGGTGCAC 60.953 55.000 26.70 20.55 43.59 4.57
2825 5593 2.106683 GTGATGCTACCGGTGCACC 61.107 63.158 26.78 26.78 43.59 5.01
2841 5609 2.260844 CACCGGATGCCATAGAATGT 57.739 50.000 9.46 0.00 0.00 2.71
2842 5610 2.575532 CACCGGATGCCATAGAATGTT 58.424 47.619 9.46 0.00 0.00 2.71
2843 5611 2.951642 CACCGGATGCCATAGAATGTTT 59.048 45.455 9.46 0.00 0.00 2.83
2844 5612 3.381272 CACCGGATGCCATAGAATGTTTT 59.619 43.478 9.46 0.00 0.00 2.43
2845 5613 4.578516 CACCGGATGCCATAGAATGTTTTA 59.421 41.667 9.46 0.00 0.00 1.52
2846 5614 5.067153 CACCGGATGCCATAGAATGTTTTAA 59.933 40.000 9.46 0.00 0.00 1.52
2847 5615 5.654650 ACCGGATGCCATAGAATGTTTTAAA 59.345 36.000 9.46 0.00 0.00 1.52
2848 5616 6.153680 ACCGGATGCCATAGAATGTTTTAAAA 59.846 34.615 9.46 0.00 0.00 1.52
2849 5617 7.038659 CCGGATGCCATAGAATGTTTTAAAAA 58.961 34.615 1.31 0.00 0.00 1.94
2877 5645 4.735662 AAAAATCTAGCACGTTAACGCA 57.264 36.364 27.07 9.61 44.43 5.24
2878 5646 4.735662 AAAATCTAGCACGTTAACGCAA 57.264 36.364 27.07 9.60 44.43 4.85
2879 5647 3.717350 AATCTAGCACGTTAACGCAAC 57.283 42.857 27.07 16.36 44.43 4.17
2880 5648 2.137129 TCTAGCACGTTAACGCAACA 57.863 45.000 27.07 9.96 44.43 3.33
2881 5649 2.679450 TCTAGCACGTTAACGCAACAT 58.321 42.857 27.07 11.68 44.43 2.71
2882 5650 2.664568 TCTAGCACGTTAACGCAACATC 59.335 45.455 27.07 10.13 44.43 3.06
2883 5651 1.222300 AGCACGTTAACGCAACATCA 58.778 45.000 27.07 0.00 44.43 3.07
2884 5652 1.600013 AGCACGTTAACGCAACATCAA 59.400 42.857 27.07 0.00 44.43 2.57
2885 5653 2.225491 AGCACGTTAACGCAACATCAAT 59.775 40.909 27.07 1.89 44.43 2.57
2886 5654 2.338228 GCACGTTAACGCAACATCAATG 59.662 45.455 27.07 15.17 44.43 2.82
2887 5655 3.550561 CACGTTAACGCAACATCAATGT 58.449 40.909 27.07 0.56 44.43 2.71
2888 5656 4.703424 CACGTTAACGCAACATCAATGTA 58.297 39.130 27.07 0.00 44.43 2.29
2889 5657 5.320723 CACGTTAACGCAACATCAATGTAT 58.679 37.500 27.07 0.00 44.43 2.29
2890 5658 5.224925 CACGTTAACGCAACATCAATGTATG 59.775 40.000 27.07 9.23 44.43 2.39
2891 5659 5.120986 ACGTTAACGCAACATCAATGTATGA 59.879 36.000 27.07 0.00 44.43 2.15
2892 5660 6.183360 ACGTTAACGCAACATCAATGTATGAT 60.183 34.615 27.07 0.00 45.96 2.45
2905 5673 7.598189 TCAATGTATGATGCCACAAAATTTG 57.402 32.000 3.89 3.89 31.50 2.32
2906 5674 6.594547 TCAATGTATGATGCCACAAAATTTGG 59.405 34.615 10.71 0.00 33.09 3.28
2907 5675 5.480642 TGTATGATGCCACAAAATTTGGT 57.519 34.783 10.71 0.00 36.40 3.67
2908 5676 6.596309 TGTATGATGCCACAAAATTTGGTA 57.404 33.333 10.71 0.00 36.40 3.25
2909 5677 7.180322 TGTATGATGCCACAAAATTTGGTAT 57.820 32.000 10.71 0.00 41.68 2.73
2910 5678 8.298729 TGTATGATGCCACAAAATTTGGTATA 57.701 30.769 10.71 0.00 39.34 1.47
2911 5679 8.753133 TGTATGATGCCACAAAATTTGGTATAA 58.247 29.630 10.71 0.00 39.34 0.98
2912 5680 9.593134 GTATGATGCCACAAAATTTGGTATAAA 57.407 29.630 10.71 0.00 39.34 1.40
2914 5682 8.908786 TGATGCCACAAAATTTGGTATAAAAA 57.091 26.923 10.71 0.00 39.34 1.94
2915 5683 9.512588 TGATGCCACAAAATTTGGTATAAAAAT 57.487 25.926 10.71 0.00 39.34 1.82
2918 5686 9.956720 TGCCACAAAATTTGGTATAAAAATTTG 57.043 25.926 10.71 11.95 43.15 2.32
2961 5729 7.837202 AAAAATGCCATATTTGACATCAGTG 57.163 32.000 0.00 0.00 0.00 3.66
2962 5730 6.534475 AAATGCCATATTTGACATCAGTGT 57.466 33.333 0.00 0.00 42.49 3.55
2963 5731 4.968812 TGCCATATTTGACATCAGTGTG 57.031 40.909 0.00 0.00 39.09 3.82
2964 5732 4.587891 TGCCATATTTGACATCAGTGTGA 58.412 39.130 0.00 0.00 39.09 3.58
2965 5733 5.195185 TGCCATATTTGACATCAGTGTGAT 58.805 37.500 0.00 0.00 39.09 3.06
2966 5734 6.355747 TGCCATATTTGACATCAGTGTGATA 58.644 36.000 0.00 0.00 39.09 2.15
2967 5735 6.827762 TGCCATATTTGACATCAGTGTGATAA 59.172 34.615 0.00 0.00 39.09 1.75
2968 5736 7.503230 TGCCATATTTGACATCAGTGTGATAAT 59.497 33.333 0.00 0.00 39.09 1.28
2969 5737 7.806487 GCCATATTTGACATCAGTGTGATAATG 59.194 37.037 0.00 0.00 39.09 1.90
2970 5738 8.294577 CCATATTTGACATCAGTGTGATAATGG 58.705 37.037 0.00 0.00 39.09 3.16
2971 5739 6.704289 ATTTGACATCAGTGTGATAATGGG 57.296 37.500 0.00 0.00 39.09 4.00
2972 5740 3.544684 TGACATCAGTGTGATAATGGGC 58.455 45.455 0.00 0.00 39.09 5.36
2973 5741 2.880890 GACATCAGTGTGATAATGGGCC 59.119 50.000 0.00 0.00 39.09 5.80
2974 5742 2.241941 ACATCAGTGTGATAATGGGCCA 59.758 45.455 9.61 9.61 34.28 5.36
2975 5743 3.289836 CATCAGTGTGATAATGGGCCAA 58.710 45.455 11.89 0.00 34.28 4.52
2976 5744 3.448093 TCAGTGTGATAATGGGCCAAA 57.552 42.857 11.89 1.34 0.00 3.28
2977 5745 3.979911 TCAGTGTGATAATGGGCCAAAT 58.020 40.909 11.89 7.49 0.00 2.32
2978 5746 3.953612 TCAGTGTGATAATGGGCCAAATC 59.046 43.478 11.89 17.28 0.00 2.17
2979 5747 3.956199 CAGTGTGATAATGGGCCAAATCT 59.044 43.478 24.45 9.19 0.00 2.40
2980 5748 5.104151 TCAGTGTGATAATGGGCCAAATCTA 60.104 40.000 24.45 15.14 0.00 1.98
2981 5749 5.593909 CAGTGTGATAATGGGCCAAATCTAA 59.406 40.000 24.45 14.47 0.00 2.10
2982 5750 6.096705 CAGTGTGATAATGGGCCAAATCTAAA 59.903 38.462 24.45 12.67 0.00 1.85
2983 5751 6.322201 AGTGTGATAATGGGCCAAATCTAAAG 59.678 38.462 24.45 0.00 0.00 1.85
2984 5752 5.068987 TGTGATAATGGGCCAAATCTAAAGC 59.931 40.000 24.45 14.04 0.00 3.51
2985 5753 4.588528 TGATAATGGGCCAAATCTAAAGCC 59.411 41.667 24.45 0.00 44.99 4.35
2989 5757 2.967599 GGCCAAATCTAAAGCCCAAG 57.032 50.000 0.00 0.00 39.60 3.61
2990 5758 2.179427 GGCCAAATCTAAAGCCCAAGT 58.821 47.619 0.00 0.00 39.60 3.16
2991 5759 2.567169 GGCCAAATCTAAAGCCCAAGTT 59.433 45.455 0.00 0.00 39.60 2.66
2992 5760 3.767131 GGCCAAATCTAAAGCCCAAGTTA 59.233 43.478 0.00 0.00 39.60 2.24
2993 5761 4.405680 GGCCAAATCTAAAGCCCAAGTTAT 59.594 41.667 0.00 0.00 39.60 1.89
2994 5762 5.351458 GCCAAATCTAAAGCCCAAGTTATG 58.649 41.667 0.00 0.00 0.00 1.90
2995 5763 5.105351 GCCAAATCTAAAGCCCAAGTTATGT 60.105 40.000 0.00 0.00 0.00 2.29
2996 5764 6.574269 GCCAAATCTAAAGCCCAAGTTATGTT 60.574 38.462 0.00 0.00 0.00 2.71
2997 5765 7.363443 GCCAAATCTAAAGCCCAAGTTATGTTA 60.363 37.037 0.00 0.00 0.00 2.41
2998 5766 8.695456 CCAAATCTAAAGCCCAAGTTATGTTAT 58.305 33.333 0.00 0.00 0.00 1.89
2999 5767 9.520204 CAAATCTAAAGCCCAAGTTATGTTATG 57.480 33.333 0.00 0.00 0.00 1.90
3000 5768 8.823220 AATCTAAAGCCCAAGTTATGTTATGT 57.177 30.769 0.00 0.00 0.00 2.29
3001 5769 9.914834 AATCTAAAGCCCAAGTTATGTTATGTA 57.085 29.630 0.00 0.00 0.00 2.29
3002 5770 8.726870 TCTAAAGCCCAAGTTATGTTATGTAC 57.273 34.615 0.00 0.00 0.00 2.90
3003 5771 8.545472 TCTAAAGCCCAAGTTATGTTATGTACT 58.455 33.333 0.00 0.00 0.00 2.73
3004 5772 9.826574 CTAAAGCCCAAGTTATGTTATGTACTA 57.173 33.333 0.00 0.00 0.00 1.82
3006 5774 9.695155 AAAGCCCAAGTTATGTTATGTACTATT 57.305 29.630 0.00 0.00 0.00 1.73
3007 5775 9.695155 AAGCCCAAGTTATGTTATGTACTATTT 57.305 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.958382 CGATCGACCAAAAGCCCCAA 60.958 55.000 10.26 0.00 0.00 4.12
55 56 0.803380 CGATGATGCTGTGCGTGAGA 60.803 55.000 0.00 0.00 0.00 3.27
146 151 1.299468 GCACTACTCCGCCTCGATG 60.299 63.158 0.00 0.00 0.00 3.84
149 154 2.103143 CAGCACTACTCCGCCTCG 59.897 66.667 0.00 0.00 0.00 4.63
244 314 1.719709 GTTGAGATAAACCGGCCGC 59.280 57.895 22.85 4.52 0.00 6.53
421 526 5.049129 AGTTTAGCGTATCCGTGTATAGGAC 60.049 44.000 0.00 0.00 41.10 3.85
424 529 5.388944 GGAGTTTAGCGTATCCGTGTATAG 58.611 45.833 0.00 0.00 36.15 1.31
425 530 4.216257 GGGAGTTTAGCGTATCCGTGTATA 59.784 45.833 0.00 0.00 36.15 1.47
426 531 3.005155 GGGAGTTTAGCGTATCCGTGTAT 59.995 47.826 0.00 0.00 36.15 2.29
477 2635 5.009010 GCTCTAACCATCCAACCACATATTG 59.991 44.000 0.00 0.00 0.00 1.90
478 2636 5.133221 GCTCTAACCATCCAACCACATATT 58.867 41.667 0.00 0.00 0.00 1.28
480 2638 3.431626 CGCTCTAACCATCCAACCACATA 60.432 47.826 0.00 0.00 0.00 2.29
481 2639 2.680805 CGCTCTAACCATCCAACCACAT 60.681 50.000 0.00 0.00 0.00 3.21
482 2640 1.338674 CGCTCTAACCATCCAACCACA 60.339 52.381 0.00 0.00 0.00 4.17
483 2641 1.066430 TCGCTCTAACCATCCAACCAC 60.066 52.381 0.00 0.00 0.00 4.16
484 2642 1.271856 TCGCTCTAACCATCCAACCA 58.728 50.000 0.00 0.00 0.00 3.67
485 2643 2.614057 CAATCGCTCTAACCATCCAACC 59.386 50.000 0.00 0.00 0.00 3.77
486 2644 3.063997 CACAATCGCTCTAACCATCCAAC 59.936 47.826 0.00 0.00 0.00 3.77
487 2645 3.270027 CACAATCGCTCTAACCATCCAA 58.730 45.455 0.00 0.00 0.00 3.53
489 2647 2.213499 CCACAATCGCTCTAACCATCC 58.787 52.381 0.00 0.00 0.00 3.51
490 2648 2.906354 ACCACAATCGCTCTAACCATC 58.094 47.619 0.00 0.00 0.00 3.51
492 2650 3.181469 GGATACCACAATCGCTCTAACCA 60.181 47.826 0.00 0.00 0.00 3.67
493 2651 3.069729 AGGATACCACAATCGCTCTAACC 59.930 47.826 0.00 0.00 37.17 2.85
495 2653 3.958147 TGAGGATACCACAATCGCTCTAA 59.042 43.478 0.00 0.00 37.17 2.10
496 2654 3.562182 TGAGGATACCACAATCGCTCTA 58.438 45.455 0.00 0.00 37.17 2.43
499 2657 2.420129 GGTTGAGGATACCACAATCGCT 60.420 50.000 4.26 0.00 36.18 4.93
500 2658 1.940613 GGTTGAGGATACCACAATCGC 59.059 52.381 4.26 0.00 36.18 4.58
501 2659 2.093181 TGGGTTGAGGATACCACAATCG 60.093 50.000 4.26 0.00 36.00 3.34
503 2661 3.527253 TGATGGGTTGAGGATACCACAAT 59.473 43.478 4.26 0.00 37.40 2.71
504 2662 2.916269 TGATGGGTTGAGGATACCACAA 59.084 45.455 0.00 0.00 37.40 3.33
507 2665 2.126882 CCTGATGGGTTGAGGATACCA 58.873 52.381 0.00 0.00 37.40 3.25
508 2666 2.938956 CCTGATGGGTTGAGGATACC 57.061 55.000 0.00 0.00 34.82 2.73
526 2684 2.213499 CGAGCATCAGGATTTGTACCC 58.787 52.381 0.00 0.00 33.17 3.69
529 2687 2.689553 TGCGAGCATCAGGATTTGTA 57.310 45.000 0.00 0.00 33.17 2.41
531 2689 3.431922 AAATGCGAGCATCAGGATTTG 57.568 42.857 11.26 0.00 37.87 2.32
532 2690 5.278660 GGAATAAATGCGAGCATCAGGATTT 60.279 40.000 11.26 4.40 40.41 2.17
533 2691 4.217118 GGAATAAATGCGAGCATCAGGATT 59.783 41.667 11.26 8.31 35.31 3.01
534 2692 3.755378 GGAATAAATGCGAGCATCAGGAT 59.245 43.478 11.26 0.39 35.31 3.24
535 2693 3.141398 GGAATAAATGCGAGCATCAGGA 58.859 45.455 11.26 0.00 35.31 3.86
538 2696 3.807553 TCAGGAATAAATGCGAGCATCA 58.192 40.909 11.26 3.11 35.31 3.07
539 2697 4.818534 TTCAGGAATAAATGCGAGCATC 57.181 40.909 11.26 0.00 35.31 3.91
540 2698 5.779529 AATTCAGGAATAAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
541 2699 5.581126 AAATTCAGGAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
542 2700 8.579682 AAATAAATTCAGGAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
562 2722 6.021311 GCGCATCGTCGGAAATTTTAAAATAA 60.021 34.615 13.68 0.00 0.00 1.40
564 2724 4.264380 GCGCATCGTCGGAAATTTTAAAAT 59.736 37.500 7.64 7.64 0.00 1.82
566 2726 3.165124 GCGCATCGTCGGAAATTTTAAA 58.835 40.909 0.30 0.00 0.00 1.52
567 2727 2.159824 TGCGCATCGTCGGAAATTTTAA 59.840 40.909 5.66 0.00 0.00 1.52
568 2728 1.732809 TGCGCATCGTCGGAAATTTTA 59.267 42.857 5.66 0.00 0.00 1.52
569 2729 0.519519 TGCGCATCGTCGGAAATTTT 59.480 45.000 5.66 0.00 0.00 1.82
572 2732 0.304705 GAATGCGCATCGTCGGAAAT 59.695 50.000 25.53 3.87 32.64 2.17
575 2735 1.878069 CTGAATGCGCATCGTCGGA 60.878 57.895 25.53 2.66 0.00 4.55
578 2738 1.349627 CCACTGAATGCGCATCGTC 59.650 57.895 25.53 18.94 0.00 4.20
579 2739 2.108514 CCCACTGAATGCGCATCGT 61.109 57.895 25.53 17.75 0.00 3.73
580 2740 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
581 2741 2.020131 CTCCCACTGAATGCGCATC 58.980 57.895 25.53 17.12 0.00 3.91
582 2742 2.117156 GCTCCCACTGAATGCGCAT 61.117 57.895 19.28 19.28 0.00 4.73
583 2743 2.747460 GCTCCCACTGAATGCGCA 60.747 61.111 14.96 14.96 0.00 6.09
584 2744 2.437359 AGCTCCCACTGAATGCGC 60.437 61.111 0.00 0.00 0.00 6.09
585 2745 2.110967 CCAGCTCCCACTGAATGCG 61.111 63.158 0.00 0.00 40.25 4.73
586 2746 2.413142 GCCAGCTCCCACTGAATGC 61.413 63.158 0.00 0.00 40.25 3.56
587 2747 0.747283 GAGCCAGCTCCCACTGAATG 60.747 60.000 8.51 0.00 40.25 2.67
588 2748 1.203441 TGAGCCAGCTCCCACTGAAT 61.203 55.000 16.69 0.00 42.09 2.57
589 2749 1.834856 CTGAGCCAGCTCCCACTGAA 61.835 60.000 16.69 0.00 42.09 3.02
590 2750 2.203832 TGAGCCAGCTCCCACTGA 60.204 61.111 16.69 0.00 42.09 3.41
591 2751 2.268280 CTGAGCCAGCTCCCACTG 59.732 66.667 16.69 0.00 42.09 3.66
592 2752 2.203907 ACTGAGCCAGCTCCCACT 60.204 61.111 16.69 0.00 42.09 4.00
593 2753 1.835927 AAGACTGAGCCAGCTCCCAC 61.836 60.000 16.69 7.83 42.09 4.61
594 2754 1.130054 AAAGACTGAGCCAGCTCCCA 61.130 55.000 16.69 0.00 42.09 4.37
595 2755 0.392327 GAAAGACTGAGCCAGCTCCC 60.392 60.000 16.69 6.46 42.09 4.30
596 2756 0.739112 CGAAAGACTGAGCCAGCTCC 60.739 60.000 16.69 1.96 42.09 4.70
597 2757 0.739112 CCGAAAGACTGAGCCAGCTC 60.739 60.000 12.78 12.78 43.01 4.09
598 2758 1.294780 CCGAAAGACTGAGCCAGCT 59.705 57.895 0.00 0.00 34.37 4.24
599 2759 1.004440 ACCGAAAGACTGAGCCAGC 60.004 57.895 2.50 0.00 34.37 4.85
600 2760 0.671781 CCACCGAAAGACTGAGCCAG 60.672 60.000 1.16 1.16 37.52 4.85
602 2762 0.951040 CACCACCGAAAGACTGAGCC 60.951 60.000 0.00 0.00 0.00 4.70
603 2763 1.569479 GCACCACCGAAAGACTGAGC 61.569 60.000 0.00 0.00 0.00 4.26
604 2764 0.034059 AGCACCACCGAAAGACTGAG 59.966 55.000 0.00 0.00 0.00 3.35
605 2765 0.033504 GAGCACCACCGAAAGACTGA 59.966 55.000 0.00 0.00 0.00 3.41
606 2766 0.249868 TGAGCACCACCGAAAGACTG 60.250 55.000 0.00 0.00 0.00 3.51
608 2768 2.271800 CTATGAGCACCACCGAAAGAC 58.728 52.381 0.00 0.00 0.00 3.01
609 2769 1.207089 CCTATGAGCACCACCGAAAGA 59.793 52.381 0.00 0.00 0.00 2.52
610 2770 1.656652 CCTATGAGCACCACCGAAAG 58.343 55.000 0.00 0.00 0.00 2.62
611 2771 0.251916 CCCTATGAGCACCACCGAAA 59.748 55.000 0.00 0.00 0.00 3.46
612 2772 1.622607 CCCCTATGAGCACCACCGAA 61.623 60.000 0.00 0.00 0.00 4.30
614 2774 1.046472 TACCCCTATGAGCACCACCG 61.046 60.000 0.00 0.00 0.00 4.94
616 2776 2.116238 TCTTACCCCTATGAGCACCAC 58.884 52.381 0.00 0.00 0.00 4.16
617 2777 2.561209 TCTTACCCCTATGAGCACCA 57.439 50.000 0.00 0.00 0.00 4.17
618 2778 2.706190 ACATCTTACCCCTATGAGCACC 59.294 50.000 0.00 0.00 0.00 5.01
619 2779 3.733337 CACATCTTACCCCTATGAGCAC 58.267 50.000 0.00 0.00 0.00 4.40
621 2781 2.772287 GCACATCTTACCCCTATGAGC 58.228 52.381 0.00 0.00 31.75 4.26
623 2783 2.102420 CACGCACATCTTACCCCTATGA 59.898 50.000 0.00 0.00 0.00 2.15
624 2784 2.158957 ACACGCACATCTTACCCCTATG 60.159 50.000 0.00 0.00 0.00 2.23
626 2786 1.206132 CACACGCACATCTTACCCCTA 59.794 52.381 0.00 0.00 0.00 3.53
628 2788 0.321298 ACACACGCACATCTTACCCC 60.321 55.000 0.00 0.00 0.00 4.95
629 2789 1.997606 GTACACACGCACATCTTACCC 59.002 52.381 0.00 0.00 0.00 3.69
630 2790 2.679450 TGTACACACGCACATCTTACC 58.321 47.619 0.00 0.00 0.00 2.85
631 2791 4.387559 TGAATGTACACACGCACATCTTAC 59.612 41.667 0.00 0.00 34.32 2.34
632 2792 4.561105 TGAATGTACACACGCACATCTTA 58.439 39.130 0.00 0.00 34.32 2.10
633 2793 3.398406 TGAATGTACACACGCACATCTT 58.602 40.909 0.00 0.00 34.32 2.40
634 2794 3.038788 TGAATGTACACACGCACATCT 57.961 42.857 0.00 0.00 34.32 2.90
635 2795 4.803613 TCTATGAATGTACACACGCACATC 59.196 41.667 0.00 0.00 34.32 3.06
636 2796 4.754322 TCTATGAATGTACACACGCACAT 58.246 39.130 0.00 1.10 36.96 3.21
637 2797 4.173256 CTCTATGAATGTACACACGCACA 58.827 43.478 0.00 0.00 0.00 4.57
638 2798 3.551890 CCTCTATGAATGTACACACGCAC 59.448 47.826 0.00 0.00 0.00 5.34
640 2800 3.551890 CACCTCTATGAATGTACACACGC 59.448 47.826 0.00 0.00 0.00 5.34
641 2801 4.993905 TCACCTCTATGAATGTACACACG 58.006 43.478 0.00 0.00 0.00 4.49
642 2802 5.807520 CACTCACCTCTATGAATGTACACAC 59.192 44.000 0.00 0.00 0.00 3.82
643 2803 5.480422 ACACTCACCTCTATGAATGTACACA 59.520 40.000 0.00 0.00 37.29 3.72
644 2804 5.967088 ACACTCACCTCTATGAATGTACAC 58.033 41.667 0.00 0.00 37.29 2.90
647 2807 6.515035 CGCATACACTCACCTCTATGAATGTA 60.515 42.308 0.20 0.20 43.29 2.29
648 2808 5.605534 GCATACACTCACCTCTATGAATGT 58.394 41.667 0.00 0.00 41.61 2.71
649 2809 4.683320 CGCATACACTCACCTCTATGAATG 59.317 45.833 0.00 0.00 32.12 2.67
650 2810 4.797604 GCGCATACACTCACCTCTATGAAT 60.798 45.833 0.30 0.00 0.00 2.57
653 2813 2.398498 GCGCATACACTCACCTCTATG 58.602 52.381 0.30 0.00 0.00 2.23
654 2814 1.001268 CGCGCATACACTCACCTCTAT 60.001 52.381 8.75 0.00 0.00 1.98
655 2815 0.380733 CGCGCATACACTCACCTCTA 59.619 55.000 8.75 0.00 0.00 2.43
656 2816 1.139734 CGCGCATACACTCACCTCT 59.860 57.895 8.75 0.00 0.00 3.69
659 2819 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
660 2820 1.255342 CATACACGCGCATACACTCAC 59.745 52.381 5.73 0.00 0.00 3.51
661 2821 1.135228 ACATACACGCGCATACACTCA 60.135 47.619 5.73 0.00 0.00 3.41
662 2822 1.556564 ACATACACGCGCATACACTC 58.443 50.000 5.73 0.00 0.00 3.51
663 2823 2.855660 TACATACACGCGCATACACT 57.144 45.000 5.73 0.00 0.00 3.55
664 2824 2.792674 ACATACATACACGCGCATACAC 59.207 45.455 5.73 0.00 0.00 2.90
666 2826 5.564213 TTAACATACATACACGCGCATAC 57.436 39.130 5.73 0.00 0.00 2.39
668 2828 5.472320 TTTTAACATACATACACGCGCAT 57.528 34.783 5.73 0.00 0.00 4.73
669 2829 4.923264 TTTTAACATACATACACGCGCA 57.077 36.364 5.73 0.00 0.00 6.09
828 3456 2.638154 CGCCCCGCAACGTAAAAA 59.362 55.556 0.00 0.00 0.00 1.94
944 3586 3.812053 GGATGCTTGTGTATGTGATCTCC 59.188 47.826 0.00 0.00 0.00 3.71
1009 3680 1.202627 GCTCTTGCAAGGGATCGATCT 60.203 52.381 30.61 3.20 39.41 2.75
1025 3696 2.365586 AAGGCATCGCTCCAGCTCT 61.366 57.895 0.00 0.00 39.32 4.09
1026 3697 2.178890 CAAGGCATCGCTCCAGCTC 61.179 63.158 0.00 0.00 39.32 4.09
1236 3927 4.217118 AGTGAATTGAGCAAGAACATGACC 59.783 41.667 0.00 0.00 0.00 4.02
1488 4226 4.415332 ATGTCGCCGTCGTCGCTT 62.415 61.111 0.00 0.00 36.96 4.68
1755 4502 0.678950 TCGCTGTGATCTTGTGACCA 59.321 50.000 0.00 0.00 0.00 4.02
1827 4578 1.065491 AGCACGCAGAATTCATACCCA 60.065 47.619 8.44 0.00 0.00 4.51
1830 4581 3.244814 CAGAGAGCACGCAGAATTCATAC 59.755 47.826 8.44 0.00 0.00 2.39
1831 4582 3.451526 CAGAGAGCACGCAGAATTCATA 58.548 45.455 8.44 0.00 0.00 2.15
1832 4583 2.277969 CAGAGAGCACGCAGAATTCAT 58.722 47.619 8.44 0.00 0.00 2.57
1833 4584 1.673923 CCAGAGAGCACGCAGAATTCA 60.674 52.381 8.44 0.00 0.00 2.57
1834 4585 1.005340 CCAGAGAGCACGCAGAATTC 58.995 55.000 0.00 0.00 0.00 2.17
1872 4623 0.673644 GTGTGCGCCCAGTATTCAGT 60.674 55.000 4.18 0.00 0.00 3.41
1929 4695 3.458189 AGAAGAAACAACGAGACCACTG 58.542 45.455 0.00 0.00 0.00 3.66
1988 4755 8.697960 CATGTGAGTTATTGAGATTACGATCAG 58.302 37.037 0.00 0.00 34.60 2.90
2034 4801 3.751479 AGCAAATTCACCAAGGAAACC 57.249 42.857 0.00 0.00 0.00 3.27
2065 4832 3.184581 CGTTTTCAGAAGGTACAGCAGAC 59.815 47.826 0.00 0.00 0.00 3.51
2075 4842 6.364945 GGATAGAAATCCGTTTTCAGAAGG 57.635 41.667 9.81 0.00 45.19 3.46
2089 4857 4.943705 ACAACGAACTGCATGGATAGAAAT 59.056 37.500 0.00 0.00 0.00 2.17
2106 4874 1.136695 ACCGTACAAGTGGAACAACGA 59.863 47.619 0.00 0.00 44.16 3.85
2107 4875 1.574134 ACCGTACAAGTGGAACAACG 58.426 50.000 0.00 0.00 44.16 4.10
2108 4876 4.571984 AGTTTACCGTACAAGTGGAACAAC 59.428 41.667 12.48 4.72 44.16 3.32
2109 4877 4.571580 CAGTTTACCGTACAAGTGGAACAA 59.428 41.667 12.48 0.00 44.16 2.83
2110 4878 4.121317 CAGTTTACCGTACAAGTGGAACA 58.879 43.478 12.48 0.00 41.43 3.18
2111 4879 4.122046 ACAGTTTACCGTACAAGTGGAAC 58.878 43.478 0.00 0.77 0.00 3.62
2112 4880 4.405116 ACAGTTTACCGTACAAGTGGAA 57.595 40.909 0.00 0.00 0.00 3.53
2113 4881 4.826733 TCTACAGTTTACCGTACAAGTGGA 59.173 41.667 0.00 0.00 0.00 4.02
2114 4882 5.125100 TCTACAGTTTACCGTACAAGTGG 57.875 43.478 0.00 0.00 0.00 4.00
2115 4883 5.159209 CCTCTACAGTTTACCGTACAAGTG 58.841 45.833 0.00 0.00 0.00 3.16
2116 4884 4.321527 GCCTCTACAGTTTACCGTACAAGT 60.322 45.833 0.00 0.00 0.00 3.16
2117 4885 4.171754 GCCTCTACAGTTTACCGTACAAG 58.828 47.826 0.00 0.00 0.00 3.16
2118 4886 3.573538 TGCCTCTACAGTTTACCGTACAA 59.426 43.478 0.00 0.00 0.00 2.41
2119 4887 3.057315 GTGCCTCTACAGTTTACCGTACA 60.057 47.826 0.00 0.00 0.00 2.90
2120 4888 3.057315 TGTGCCTCTACAGTTTACCGTAC 60.057 47.826 0.00 0.00 0.00 3.67
2121 4889 3.156293 TGTGCCTCTACAGTTTACCGTA 58.844 45.455 0.00 0.00 0.00 4.02
2127 4895 5.008712 GCTTTAGTTTGTGCCTCTACAGTTT 59.991 40.000 0.00 0.00 0.00 2.66
2173 4941 1.226030 GAAGTTAGCCAACCGTGCGT 61.226 55.000 0.00 0.00 35.05 5.24
2400 5168 1.268625 CACACTCCGCAGTACAGTACA 59.731 52.381 13.37 0.00 0.00 2.90
2401 5169 1.268899 ACACACTCCGCAGTACAGTAC 59.731 52.381 2.05 2.05 0.00 2.73
2402 5170 1.538512 GACACACTCCGCAGTACAGTA 59.461 52.381 0.00 0.00 0.00 2.74
2403 5171 0.314302 GACACACTCCGCAGTACAGT 59.686 55.000 0.00 0.00 0.00 3.55
2404 5172 0.313987 TGACACACTCCGCAGTACAG 59.686 55.000 0.00 0.00 0.00 2.74
2443 5211 2.534019 CGTGCACAGACCCACACAC 61.534 63.158 18.64 0.00 33.23 3.82
2452 5220 0.877743 CTCTCTGACTCGTGCACAGA 59.122 55.000 18.64 13.77 38.16 3.41
2535 5303 3.947612 AGTCCTAGTCCAGTATTCGGA 57.052 47.619 0.00 0.00 0.00 4.55
2538 5306 5.706833 GGCTAGTAGTCCTAGTCCAGTATTC 59.293 48.000 0.00 0.00 41.68 1.75
2541 5309 4.703379 GGCTAGTAGTCCTAGTCCAGTA 57.297 50.000 0.00 0.00 41.68 2.74
2551 5319 1.948834 GACTTCGAGGGCTAGTAGTCC 59.051 57.143 13.29 13.29 41.32 3.85
2552 5320 1.598601 CGACTTCGAGGGCTAGTAGTC 59.401 57.143 0.00 0.00 43.02 2.59
2553 5321 1.666054 CGACTTCGAGGGCTAGTAGT 58.334 55.000 0.00 0.00 43.02 2.73
2554 5322 0.308376 GCGACTTCGAGGGCTAGTAG 59.692 60.000 2.02 0.00 43.02 2.57
2555 5323 0.393402 TGCGACTTCGAGGGCTAGTA 60.393 55.000 2.02 0.00 43.02 1.82
2556 5324 1.677966 TGCGACTTCGAGGGCTAGT 60.678 57.895 2.02 0.00 43.02 2.57
2557 5325 1.226717 GTGCGACTTCGAGGGCTAG 60.227 63.158 2.02 0.00 43.02 3.42
2558 5326 2.707849 GGTGCGACTTCGAGGGCTA 61.708 63.158 2.02 0.00 43.02 3.93
2559 5327 4.070552 GGTGCGACTTCGAGGGCT 62.071 66.667 2.02 0.00 43.02 5.19
2561 5329 3.358076 GAGGGTGCGACTTCGAGGG 62.358 68.421 2.02 0.00 43.02 4.30
2562 5330 2.182030 GAGGGTGCGACTTCGAGG 59.818 66.667 2.02 0.00 43.02 4.63
2563 5331 2.202492 CGAGGGTGCGACTTCGAG 60.202 66.667 2.02 0.00 43.02 4.04
2564 5332 4.415332 GCGAGGGTGCGACTTCGA 62.415 66.667 14.52 0.00 43.02 3.71
2565 5333 3.989698 ATGCGAGGGTGCGACTTCG 62.990 63.158 7.46 7.46 43.27 3.79
2566 5334 2.125512 ATGCGAGGGTGCGACTTC 60.126 61.111 0.00 0.00 37.81 3.01
2567 5335 1.884075 TACATGCGAGGGTGCGACTT 61.884 55.000 0.00 0.00 37.81 3.01
2568 5336 2.348104 TACATGCGAGGGTGCGACT 61.348 57.895 0.00 0.00 37.81 4.18
2569 5337 2.165301 GTACATGCGAGGGTGCGAC 61.165 63.158 0.00 0.00 37.81 5.19
2570 5338 1.033202 TAGTACATGCGAGGGTGCGA 61.033 55.000 0.00 0.00 37.81 5.10
2571 5339 0.595053 CTAGTACATGCGAGGGTGCG 60.595 60.000 0.00 0.00 37.81 5.34
2572 5340 0.249489 CCTAGTACATGCGAGGGTGC 60.249 60.000 0.00 0.00 0.00 5.01
2573 5341 1.067212 GACCTAGTACATGCGAGGGTG 59.933 57.143 0.00 0.00 35.87 4.61
2574 5342 1.400737 GACCTAGTACATGCGAGGGT 58.599 55.000 0.00 0.00 35.87 4.34
2575 5343 0.311165 CGACCTAGTACATGCGAGGG 59.689 60.000 0.00 0.00 35.87 4.30
2576 5344 1.022735 ACGACCTAGTACATGCGAGG 58.977 55.000 0.00 0.00 37.30 4.63
2577 5345 1.669265 TCACGACCTAGTACATGCGAG 59.331 52.381 0.00 0.00 0.00 5.03
2578 5346 1.741528 TCACGACCTAGTACATGCGA 58.258 50.000 0.00 0.00 0.00 5.10
2579 5347 2.776312 ATCACGACCTAGTACATGCG 57.224 50.000 0.00 0.00 0.00 4.73
2580 5348 3.123804 CCAATCACGACCTAGTACATGC 58.876 50.000 0.00 0.00 0.00 4.06
2581 5349 3.123804 GCCAATCACGACCTAGTACATG 58.876 50.000 0.00 0.00 0.00 3.21
2582 5350 3.031736 AGCCAATCACGACCTAGTACAT 58.968 45.455 0.00 0.00 0.00 2.29
2583 5351 2.453521 AGCCAATCACGACCTAGTACA 58.546 47.619 0.00 0.00 0.00 2.90
2584 5352 3.445857 GAAGCCAATCACGACCTAGTAC 58.554 50.000 0.00 0.00 0.00 2.73
2585 5353 2.429610 GGAAGCCAATCACGACCTAGTA 59.570 50.000 0.00 0.00 0.00 1.82
2586 5354 1.207329 GGAAGCCAATCACGACCTAGT 59.793 52.381 0.00 0.00 0.00 2.57
2587 5355 1.207089 TGGAAGCCAATCACGACCTAG 59.793 52.381 0.00 0.00 0.00 3.02
2588 5356 1.271856 TGGAAGCCAATCACGACCTA 58.728 50.000 0.00 0.00 0.00 3.08
2589 5357 0.400213 TTGGAAGCCAATCACGACCT 59.600 50.000 0.00 0.00 38.75 3.85
2590 5358 1.200020 CTTTGGAAGCCAATCACGACC 59.800 52.381 0.00 0.00 43.55 4.79
2591 5359 2.151202 TCTTTGGAAGCCAATCACGAC 58.849 47.619 0.00 0.00 43.55 4.34
2592 5360 2.038426 TCTCTTTGGAAGCCAATCACGA 59.962 45.455 0.00 0.00 43.55 4.35
2593 5361 2.426522 TCTCTTTGGAAGCCAATCACG 58.573 47.619 0.00 0.00 43.55 4.35
2594 5362 4.036144 GCTATCTCTTTGGAAGCCAATCAC 59.964 45.833 0.00 0.00 43.55 3.06
2595 5363 4.202441 GCTATCTCTTTGGAAGCCAATCA 58.798 43.478 0.00 0.00 43.55 2.57
2596 5364 4.202441 TGCTATCTCTTTGGAAGCCAATC 58.798 43.478 0.00 0.00 43.55 2.67
2597 5365 4.240881 TGCTATCTCTTTGGAAGCCAAT 57.759 40.909 0.00 0.00 43.55 3.16
2598 5366 3.719268 TGCTATCTCTTTGGAAGCCAA 57.281 42.857 0.00 0.00 42.29 4.52
2599 5367 3.719268 TTGCTATCTCTTTGGAAGCCA 57.281 42.857 0.00 0.00 32.14 4.75
2600 5368 4.641989 TCATTTGCTATCTCTTTGGAAGCC 59.358 41.667 0.00 0.00 32.14 4.35
2601 5369 5.124457 TGTCATTTGCTATCTCTTTGGAAGC 59.876 40.000 0.00 0.00 0.00 3.86
2602 5370 6.677431 GCTGTCATTTGCTATCTCTTTGGAAG 60.677 42.308 0.00 0.00 0.00 3.46
2603 5371 5.124457 GCTGTCATTTGCTATCTCTTTGGAA 59.876 40.000 0.00 0.00 0.00 3.53
2604 5372 4.637534 GCTGTCATTTGCTATCTCTTTGGA 59.362 41.667 0.00 0.00 0.00 3.53
2605 5373 4.397103 TGCTGTCATTTGCTATCTCTTTGG 59.603 41.667 0.00 0.00 0.00 3.28
2606 5374 5.556355 TGCTGTCATTTGCTATCTCTTTG 57.444 39.130 0.00 0.00 0.00 2.77
2607 5375 6.770746 ATTGCTGTCATTTGCTATCTCTTT 57.229 33.333 0.00 0.00 0.00 2.52
2608 5376 7.521748 GCATATTGCTGTCATTTGCTATCTCTT 60.522 37.037 0.00 0.00 40.96 2.85
2609 5377 6.072618 GCATATTGCTGTCATTTGCTATCTCT 60.073 38.462 0.00 0.00 40.96 3.10
2610 5378 6.084925 GCATATTGCTGTCATTTGCTATCTC 58.915 40.000 0.00 0.00 40.96 2.75
2611 5379 5.334646 CGCATATTGCTGTCATTTGCTATCT 60.335 40.000 0.00 0.00 42.25 1.98
2612 5380 4.849926 CGCATATTGCTGTCATTTGCTATC 59.150 41.667 0.00 0.00 42.25 2.08
2613 5381 4.516321 TCGCATATTGCTGTCATTTGCTAT 59.484 37.500 0.00 0.00 42.25 2.97
2614 5382 3.876320 TCGCATATTGCTGTCATTTGCTA 59.124 39.130 0.00 0.00 42.25 3.49
2615 5383 2.684374 TCGCATATTGCTGTCATTTGCT 59.316 40.909 0.00 0.00 42.25 3.91
2616 5384 3.069074 TCGCATATTGCTGTCATTTGC 57.931 42.857 0.00 0.00 42.25 3.68
2617 5385 3.424198 GCATCGCATATTGCTGTCATTTG 59.576 43.478 0.00 0.00 42.25 2.32
2618 5386 3.317149 AGCATCGCATATTGCTGTCATTT 59.683 39.130 0.00 0.00 46.96 2.32
2619 5387 2.882761 AGCATCGCATATTGCTGTCATT 59.117 40.909 0.00 0.00 46.96 2.57
2620 5388 2.501261 AGCATCGCATATTGCTGTCAT 58.499 42.857 0.00 0.00 46.96 3.06
2621 5389 1.957668 AGCATCGCATATTGCTGTCA 58.042 45.000 0.00 0.00 46.96 3.58
2626 5394 6.752335 TTGAAATTAAGCATCGCATATTGC 57.248 33.333 0.00 0.00 40.69 3.56
2627 5395 8.970293 TGATTTGAAATTAAGCATCGCATATTG 58.030 29.630 0.00 0.00 0.00 1.90
2628 5396 9.531942 TTGATTTGAAATTAAGCATCGCATATT 57.468 25.926 0.00 0.00 0.00 1.28
2629 5397 9.531942 TTTGATTTGAAATTAAGCATCGCATAT 57.468 25.926 0.00 0.00 0.00 1.78
2630 5398 8.923609 TTTGATTTGAAATTAAGCATCGCATA 57.076 26.923 0.00 0.00 0.00 3.14
2631 5399 7.830940 TTTGATTTGAAATTAAGCATCGCAT 57.169 28.000 0.00 0.00 0.00 4.73
2632 5400 7.170489 TGTTTTGATTTGAAATTAAGCATCGCA 59.830 29.630 0.00 0.00 0.00 5.10
2633 5401 7.508965 TGTTTTGATTTGAAATTAAGCATCGC 58.491 30.769 0.00 0.00 0.00 4.58
2634 5402 9.861138 TTTGTTTTGATTTGAAATTAAGCATCG 57.139 25.926 0.00 0.00 0.00 3.84
2673 5441 4.130286 AGATTTTGTTCACCCGCAAAAA 57.870 36.364 6.55 0.00 44.38 1.94
2674 5442 3.810310 AGATTTTGTTCACCCGCAAAA 57.190 38.095 5.16 5.16 44.99 2.44
2675 5443 3.131223 TCAAGATTTTGTTCACCCGCAAA 59.869 39.130 0.00 0.00 35.73 3.68
2676 5444 2.690497 TCAAGATTTTGTTCACCCGCAA 59.310 40.909 0.00 0.00 35.73 4.85
2677 5445 2.034053 GTCAAGATTTTGTTCACCCGCA 59.966 45.455 0.00 0.00 35.73 5.69
2678 5446 2.293399 AGTCAAGATTTTGTTCACCCGC 59.707 45.455 0.00 0.00 35.73 6.13
2679 5447 4.036262 TCAAGTCAAGATTTTGTTCACCCG 59.964 41.667 0.00 0.00 35.73 5.28
2680 5448 5.514274 TCAAGTCAAGATTTTGTTCACCC 57.486 39.130 0.00 0.00 35.73 4.61
2681 5449 5.455525 CGTTCAAGTCAAGATTTTGTTCACC 59.544 40.000 0.00 0.00 35.73 4.02
2682 5450 6.255215 TCGTTCAAGTCAAGATTTTGTTCAC 58.745 36.000 0.00 0.00 35.73 3.18
2683 5451 6.429791 TCGTTCAAGTCAAGATTTTGTTCA 57.570 33.333 0.00 0.00 35.73 3.18
2684 5452 5.909610 CCTCGTTCAAGTCAAGATTTTGTTC 59.090 40.000 0.00 0.00 35.73 3.18
2685 5453 5.221048 CCCTCGTTCAAGTCAAGATTTTGTT 60.221 40.000 0.00 0.00 35.73 2.83
2686 5454 4.275936 CCCTCGTTCAAGTCAAGATTTTGT 59.724 41.667 0.00 0.00 35.73 2.83
2687 5455 4.515191 TCCCTCGTTCAAGTCAAGATTTTG 59.485 41.667 0.00 0.00 35.57 2.44
2688 5456 4.714632 TCCCTCGTTCAAGTCAAGATTTT 58.285 39.130 0.00 0.00 0.00 1.82
2689 5457 4.351874 TCCCTCGTTCAAGTCAAGATTT 57.648 40.909 0.00 0.00 0.00 2.17
2690 5458 4.351874 TTCCCTCGTTCAAGTCAAGATT 57.648 40.909 0.00 0.00 0.00 2.40
2691 5459 4.040461 TCTTTCCCTCGTTCAAGTCAAGAT 59.960 41.667 0.00 0.00 0.00 2.40
2692 5460 3.386726 TCTTTCCCTCGTTCAAGTCAAGA 59.613 43.478 0.00 0.00 0.00 3.02
2693 5461 3.495001 GTCTTTCCCTCGTTCAAGTCAAG 59.505 47.826 0.00 0.00 0.00 3.02
2694 5462 3.118555 TGTCTTTCCCTCGTTCAAGTCAA 60.119 43.478 0.00 0.00 0.00 3.18
2695 5463 2.432874 TGTCTTTCCCTCGTTCAAGTCA 59.567 45.455 0.00 0.00 0.00 3.41
2696 5464 2.801111 GTGTCTTTCCCTCGTTCAAGTC 59.199 50.000 0.00 0.00 0.00 3.01
2697 5465 2.484947 GGTGTCTTTCCCTCGTTCAAGT 60.485 50.000 0.00 0.00 0.00 3.16
2698 5466 2.143925 GGTGTCTTTCCCTCGTTCAAG 58.856 52.381 0.00 0.00 0.00 3.02
2699 5467 1.487142 TGGTGTCTTTCCCTCGTTCAA 59.513 47.619 0.00 0.00 0.00 2.69
2700 5468 1.124780 TGGTGTCTTTCCCTCGTTCA 58.875 50.000 0.00 0.00 0.00 3.18
2701 5469 2.249844 TTGGTGTCTTTCCCTCGTTC 57.750 50.000 0.00 0.00 0.00 3.95
2702 5470 2.721425 TTTGGTGTCTTTCCCTCGTT 57.279 45.000 0.00 0.00 0.00 3.85
2703 5471 2.721425 TTTTGGTGTCTTTCCCTCGT 57.279 45.000 0.00 0.00 0.00 4.18
2704 5472 3.412386 AGATTTTGGTGTCTTTCCCTCG 58.588 45.455 0.00 0.00 0.00 4.63
2705 5473 6.894339 TTAAGATTTTGGTGTCTTTCCCTC 57.106 37.500 0.00 0.00 36.23 4.30
2706 5474 7.855784 AATTAAGATTTTGGTGTCTTTCCCT 57.144 32.000 0.00 0.00 36.23 4.20
2707 5475 8.147704 TGAAATTAAGATTTTGGTGTCTTTCCC 58.852 33.333 0.00 0.00 35.65 3.97
2708 5476 9.196552 CTGAAATTAAGATTTTGGTGTCTTTCC 57.803 33.333 0.00 0.00 35.65 3.13
2709 5477 9.750125 ACTGAAATTAAGATTTTGGTGTCTTTC 57.250 29.630 0.00 0.00 35.65 2.62
2710 5478 9.533253 CACTGAAATTAAGATTTTGGTGTCTTT 57.467 29.630 0.00 0.00 35.65 2.52
2711 5479 8.695456 ACACTGAAATTAAGATTTTGGTGTCTT 58.305 29.630 13.03 0.00 41.58 3.01
2712 5480 8.237811 ACACTGAAATTAAGATTTTGGTGTCT 57.762 30.769 13.03 0.00 41.58 3.41
2713 5481 8.755018 CAACACTGAAATTAAGATTTTGGTGTC 58.245 33.333 16.26 0.00 42.82 3.67
2714 5482 7.710475 CCAACACTGAAATTAAGATTTTGGTGT 59.290 33.333 13.03 13.03 43.94 4.16
2715 5483 7.171337 CCCAACACTGAAATTAAGATTTTGGTG 59.829 37.037 12.23 12.23 40.15 4.17
2716 5484 7.070571 TCCCAACACTGAAATTAAGATTTTGGT 59.929 33.333 0.00 0.00 35.65 3.67
2717 5485 7.384932 GTCCCAACACTGAAATTAAGATTTTGG 59.615 37.037 0.00 0.00 35.65 3.28
2718 5486 7.114811 CGTCCCAACACTGAAATTAAGATTTTG 59.885 37.037 0.00 0.00 35.65 2.44
2719 5487 7.145323 CGTCCCAACACTGAAATTAAGATTTT 58.855 34.615 0.00 0.00 35.65 1.82
2720 5488 6.264518 ACGTCCCAACACTGAAATTAAGATTT 59.735 34.615 0.00 0.00 38.16 2.17
2721 5489 5.768164 ACGTCCCAACACTGAAATTAAGATT 59.232 36.000 0.00 0.00 0.00 2.40
2722 5490 5.181245 CACGTCCCAACACTGAAATTAAGAT 59.819 40.000 0.00 0.00 0.00 2.40
2723 5491 4.513692 CACGTCCCAACACTGAAATTAAGA 59.486 41.667 0.00 0.00 0.00 2.10
2724 5492 4.274950 ACACGTCCCAACACTGAAATTAAG 59.725 41.667 0.00 0.00 0.00 1.85
2725 5493 4.200874 ACACGTCCCAACACTGAAATTAA 58.799 39.130 0.00 0.00 0.00 1.40
2726 5494 3.810941 GACACGTCCCAACACTGAAATTA 59.189 43.478 0.00 0.00 0.00 1.40
2727 5495 2.616842 GACACGTCCCAACACTGAAATT 59.383 45.455 0.00 0.00 0.00 1.82
2728 5496 2.218603 GACACGTCCCAACACTGAAAT 58.781 47.619 0.00 0.00 0.00 2.17
2729 5497 1.658994 GACACGTCCCAACACTGAAA 58.341 50.000 0.00 0.00 0.00 2.69
2730 5498 0.179067 GGACACGTCCCAACACTGAA 60.179 55.000 4.78 0.00 43.94 3.02
2731 5499 1.444250 GGACACGTCCCAACACTGA 59.556 57.895 4.78 0.00 43.94 3.41
2732 5500 1.954146 CGGACACGTCCCAACACTG 60.954 63.158 10.61 0.00 46.96 3.66
2733 5501 2.420043 CGGACACGTCCCAACACT 59.580 61.111 10.61 0.00 46.96 3.55
2744 5512 5.158494 CAAATAAGGGCTTAAAACGGACAC 58.842 41.667 0.00 0.00 0.00 3.67
2745 5513 4.828387 ACAAATAAGGGCTTAAAACGGACA 59.172 37.500 0.00 0.00 0.00 4.02
2746 5514 5.381174 ACAAATAAGGGCTTAAAACGGAC 57.619 39.130 0.00 0.00 0.00 4.79
2747 5515 6.183360 ACAAACAAATAAGGGCTTAAAACGGA 60.183 34.615 0.00 0.00 0.00 4.69
2748 5516 5.986741 ACAAACAAATAAGGGCTTAAAACGG 59.013 36.000 0.00 0.00 0.00 4.44
2749 5517 6.144886 GGACAAACAAATAAGGGCTTAAAACG 59.855 38.462 0.00 0.00 0.00 3.60
2750 5518 6.987404 TGGACAAACAAATAAGGGCTTAAAAC 59.013 34.615 0.00 0.00 0.00 2.43
2751 5519 7.125792 TGGACAAACAAATAAGGGCTTAAAA 57.874 32.000 0.00 0.00 0.00 1.52
2752 5520 6.732896 TGGACAAACAAATAAGGGCTTAAA 57.267 33.333 0.00 0.00 0.00 1.52
2753 5521 6.696411 CATGGACAAACAAATAAGGGCTTAA 58.304 36.000 0.00 0.00 0.00 1.85
2754 5522 5.337169 GCATGGACAAACAAATAAGGGCTTA 60.337 40.000 0.00 0.00 0.00 3.09
2755 5523 4.563374 GCATGGACAAACAAATAAGGGCTT 60.563 41.667 0.00 0.00 0.00 4.35
2756 5524 3.055891 GCATGGACAAACAAATAAGGGCT 60.056 43.478 0.00 0.00 0.00 5.19
2757 5525 3.261580 GCATGGACAAACAAATAAGGGC 58.738 45.455 0.00 0.00 0.00 5.19
2758 5526 4.497300 CTGCATGGACAAACAAATAAGGG 58.503 43.478 0.00 0.00 0.00 3.95
2759 5527 4.497300 CCTGCATGGACAAACAAATAAGG 58.503 43.478 0.00 0.00 38.35 2.69
2760 5528 4.220382 TCCCTGCATGGACAAACAAATAAG 59.780 41.667 6.63 0.00 38.35 1.73
2761 5529 4.155709 TCCCTGCATGGACAAACAAATAA 58.844 39.130 6.63 0.00 38.35 1.40
2762 5530 3.772387 TCCCTGCATGGACAAACAAATA 58.228 40.909 6.63 0.00 38.35 1.40
2763 5531 2.607499 TCCCTGCATGGACAAACAAAT 58.393 42.857 6.63 0.00 38.35 2.32
2764 5532 2.079170 TCCCTGCATGGACAAACAAA 57.921 45.000 6.63 0.00 38.35 2.83
2765 5533 2.079170 TTCCCTGCATGGACAAACAA 57.921 45.000 10.61 0.00 38.35 2.83
2766 5534 1.894466 CATTCCCTGCATGGACAAACA 59.106 47.619 10.61 0.00 38.35 2.83
2767 5535 1.895131 ACATTCCCTGCATGGACAAAC 59.105 47.619 10.61 0.00 38.35 2.93
2768 5536 2.307496 ACATTCCCTGCATGGACAAA 57.693 45.000 10.61 0.00 38.35 2.83
2769 5537 3.554934 GATACATTCCCTGCATGGACAA 58.445 45.455 10.61 0.00 38.35 3.18
2770 5538 2.158623 GGATACATTCCCTGCATGGACA 60.159 50.000 10.61 3.07 38.75 4.02
2771 5539 2.508526 GGATACATTCCCTGCATGGAC 58.491 52.381 10.61 0.00 38.75 4.02
2772 5540 1.072173 CGGATACATTCCCTGCATGGA 59.928 52.381 6.63 6.63 42.06 3.41
2773 5541 1.527034 CGGATACATTCCCTGCATGG 58.473 55.000 0.78 0.78 42.06 3.66
2774 5542 1.202806 ACCGGATACATTCCCTGCATG 60.203 52.381 9.46 0.00 42.06 4.06
2775 5543 1.140312 ACCGGATACATTCCCTGCAT 58.860 50.000 9.46 0.00 42.06 3.96
2776 5544 0.180171 CACCGGATACATTCCCTGCA 59.820 55.000 9.46 0.00 42.06 4.41
2777 5545 1.166531 GCACCGGATACATTCCCTGC 61.167 60.000 9.46 0.00 42.06 4.85
2778 5546 0.180171 TGCACCGGATACATTCCCTG 59.820 55.000 9.46 0.00 42.06 4.45
2779 5547 1.072331 GATGCACCGGATACATTCCCT 59.928 52.381 9.46 0.00 42.06 4.20
2780 5548 1.523758 GATGCACCGGATACATTCCC 58.476 55.000 9.46 0.00 42.06 3.97
2781 5549 1.202758 TGGATGCACCGGATACATTCC 60.203 52.381 9.46 11.84 42.61 3.01
2782 5550 1.873591 GTGGATGCACCGGATACATTC 59.126 52.381 9.46 7.99 42.61 2.67
2783 5551 1.211703 TGTGGATGCACCGGATACATT 59.788 47.619 15.34 0.00 42.61 2.71
2784 5552 0.836606 TGTGGATGCACCGGATACAT 59.163 50.000 15.34 8.56 42.61 2.29
2785 5553 0.107897 GTGTGGATGCACCGGATACA 60.108 55.000 15.34 2.78 42.61 2.29
2786 5554 0.178068 AGTGTGGATGCACCGGATAC 59.822 55.000 15.34 5.79 42.61 2.24
2787 5555 0.908910 AAGTGTGGATGCACCGGATA 59.091 50.000 15.34 0.00 42.61 2.59
2788 5556 0.677731 CAAGTGTGGATGCACCGGAT 60.678 55.000 15.34 0.00 42.61 4.18
2789 5557 1.302431 CAAGTGTGGATGCACCGGA 60.302 57.895 15.34 0.00 42.61 5.14
2790 5558 1.600636 ACAAGTGTGGATGCACCGG 60.601 57.895 15.34 0.00 42.61 5.28
2791 5559 0.884259 TCACAAGTGTGGATGCACCG 60.884 55.000 15.34 3.45 45.65 4.94
2792 5560 1.200716 CATCACAAGTGTGGATGCACC 59.799 52.381 15.34 6.32 45.65 5.01
2793 5561 1.401931 GCATCACAAGTGTGGATGCAC 60.402 52.381 26.38 10.90 46.44 4.57
2794 5562 0.883153 GCATCACAAGTGTGGATGCA 59.117 50.000 26.38 0.00 46.44 3.96
2795 5563 1.171308 AGCATCACAAGTGTGGATGC 58.829 50.000 25.21 25.21 46.92 3.91
2796 5564 2.679837 GGTAGCATCACAAGTGTGGATG 59.320 50.000 11.38 13.23 45.65 3.51
2797 5565 2.677902 CGGTAGCATCACAAGTGTGGAT 60.678 50.000 11.38 1.85 45.65 3.41
2798 5566 1.337728 CGGTAGCATCACAAGTGTGGA 60.338 52.381 11.38 0.00 45.65 4.02
2799 5567 1.078709 CGGTAGCATCACAAGTGTGG 58.921 55.000 11.38 0.00 45.65 4.17
2800 5568 1.078709 CCGGTAGCATCACAAGTGTG 58.921 55.000 5.02 5.02 46.91 3.82
2801 5569 0.685097 ACCGGTAGCATCACAAGTGT 59.315 50.000 4.49 0.00 0.00 3.55
2802 5570 1.078709 CACCGGTAGCATCACAAGTG 58.921 55.000 6.87 0.00 0.00 3.16
2803 5571 0.673644 GCACCGGTAGCATCACAAGT 60.674 55.000 19.85 0.00 0.00 3.16
2804 5572 0.673333 TGCACCGGTAGCATCACAAG 60.673 55.000 22.47 2.59 37.02 3.16
2805 5573 0.953471 GTGCACCGGTAGCATCACAA 60.953 55.000 26.82 7.44 44.79 3.33
2806 5574 1.375396 GTGCACCGGTAGCATCACA 60.375 57.895 26.82 8.03 44.79 3.58
2807 5575 2.106683 GGTGCACCGGTAGCATCAC 61.107 63.158 26.99 19.59 44.79 3.06
2808 5576 2.267642 GGTGCACCGGTAGCATCA 59.732 61.111 26.99 11.44 44.79 3.07
2822 5590 2.260844 ACATTCTATGGCATCCGGTG 57.739 50.000 1.65 2.23 33.60 4.94
2823 5591 3.297134 AAACATTCTATGGCATCCGGT 57.703 42.857 1.65 0.00 33.60 5.28
2824 5592 5.766150 TTAAAACATTCTATGGCATCCGG 57.234 39.130 1.65 0.00 33.60 5.14
2856 5624 4.735662 TGCGTTAACGTGCTAGATTTTT 57.264 36.364 27.28 0.00 42.22 1.94
2857 5625 4.024725 TGTTGCGTTAACGTGCTAGATTTT 60.025 37.500 27.28 0.00 42.34 1.82
2858 5626 3.495377 TGTTGCGTTAACGTGCTAGATTT 59.505 39.130 27.28 0.00 42.34 2.17
2859 5627 3.061322 TGTTGCGTTAACGTGCTAGATT 58.939 40.909 27.28 0.00 42.34 2.40
2860 5628 2.679450 TGTTGCGTTAACGTGCTAGAT 58.321 42.857 27.28 0.00 42.34 1.98
2861 5629 2.137129 TGTTGCGTTAACGTGCTAGA 57.863 45.000 27.28 6.31 42.34 2.43
2862 5630 2.410392 TGATGTTGCGTTAACGTGCTAG 59.590 45.455 27.28 0.73 42.34 3.42
2863 5631 2.405172 TGATGTTGCGTTAACGTGCTA 58.595 42.857 27.28 13.42 42.34 3.49
2864 5632 1.222300 TGATGTTGCGTTAACGTGCT 58.778 45.000 27.28 9.65 42.34 4.40
2865 5633 2.025544 TTGATGTTGCGTTAACGTGC 57.974 45.000 27.28 17.78 42.34 5.34
2866 5634 3.550561 ACATTGATGTTGCGTTAACGTG 58.449 40.909 27.28 16.75 42.34 4.49
2867 5635 3.889196 ACATTGATGTTGCGTTAACGT 57.111 38.095 27.28 8.80 42.34 3.99
2868 5636 5.555552 TCATACATTGATGTTGCGTTAACG 58.444 37.500 23.40 23.40 42.34 3.18
2880 5648 7.281324 CCAAATTTTGTGGCATCATACATTGAT 59.719 33.333 8.26 0.00 46.27 2.57
2881 5649 6.594547 CCAAATTTTGTGGCATCATACATTGA 59.405 34.615 8.26 0.00 39.12 2.57
2882 5650 6.372103 ACCAAATTTTGTGGCATCATACATTG 59.628 34.615 8.26 0.00 40.02 2.82
2883 5651 6.474630 ACCAAATTTTGTGGCATCATACATT 58.525 32.000 8.26 0.00 40.02 2.71
2884 5652 6.052405 ACCAAATTTTGTGGCATCATACAT 57.948 33.333 8.26 0.00 40.02 2.29
2885 5653 5.480642 ACCAAATTTTGTGGCATCATACA 57.519 34.783 8.26 0.00 40.02 2.29
2886 5654 9.593134 TTTATACCAAATTTTGTGGCATCATAC 57.407 29.630 8.26 0.00 40.02 2.39
2888 5656 9.512588 TTTTTATACCAAATTTTGTGGCATCAT 57.487 25.926 8.26 0.00 40.02 2.45
2889 5657 8.908786 TTTTTATACCAAATTTTGTGGCATCA 57.091 26.923 8.26 0.00 40.02 3.07
2892 5660 9.956720 CAAATTTTTATACCAAATTTTGTGGCA 57.043 25.926 8.26 0.00 40.34 4.92
2942 5710 4.587891 TCACACTGATGTCAAATATGGCA 58.412 39.130 0.00 0.00 46.97 4.92
2943 5711 5.762825 ATCACACTGATGTCAAATATGGC 57.237 39.130 0.00 0.00 36.72 4.40
2944 5712 8.294577 CCATTATCACACTGATGTCAAATATGG 58.705 37.037 0.00 0.00 37.70 2.74
2945 5713 8.294577 CCCATTATCACACTGATGTCAAATATG 58.705 37.037 0.00 0.00 37.70 1.78
2946 5714 7.040201 GCCCATTATCACACTGATGTCAAATAT 60.040 37.037 0.00 0.00 37.70 1.28
2947 5715 6.262944 GCCCATTATCACACTGATGTCAAATA 59.737 38.462 0.00 0.00 37.70 1.40
2948 5716 5.068198 GCCCATTATCACACTGATGTCAAAT 59.932 40.000 0.00 0.00 37.70 2.32
2949 5717 4.398988 GCCCATTATCACACTGATGTCAAA 59.601 41.667 0.00 0.00 37.70 2.69
2950 5718 3.947196 GCCCATTATCACACTGATGTCAA 59.053 43.478 0.00 0.00 37.70 3.18
2951 5719 3.544684 GCCCATTATCACACTGATGTCA 58.455 45.455 0.00 0.00 37.70 3.58
2952 5720 2.880890 GGCCCATTATCACACTGATGTC 59.119 50.000 0.00 0.00 37.70 3.06
2953 5721 2.241941 TGGCCCATTATCACACTGATGT 59.758 45.455 0.00 0.00 37.70 3.06
2954 5722 2.934887 TGGCCCATTATCACACTGATG 58.065 47.619 0.00 0.00 37.70 3.07
2955 5723 3.668141 TTGGCCCATTATCACACTGAT 57.332 42.857 0.00 0.00 40.72 2.90
2956 5724 3.448093 TTTGGCCCATTATCACACTGA 57.552 42.857 0.00 0.00 0.00 3.41
2957 5725 3.956199 AGATTTGGCCCATTATCACACTG 59.044 43.478 0.00 0.00 0.00 3.66
2958 5726 4.255510 AGATTTGGCCCATTATCACACT 57.744 40.909 0.00 0.00 0.00 3.55
2959 5727 6.463995 TTTAGATTTGGCCCATTATCACAC 57.536 37.500 0.00 0.00 0.00 3.82
2960 5728 5.068987 GCTTTAGATTTGGCCCATTATCACA 59.931 40.000 0.00 0.00 0.00 3.58
2961 5729 5.509670 GGCTTTAGATTTGGCCCATTATCAC 60.510 44.000 0.00 0.00 38.77 3.06
2962 5730 4.588528 GGCTTTAGATTTGGCCCATTATCA 59.411 41.667 0.00 0.00 38.77 2.15
2963 5731 5.139435 GGCTTTAGATTTGGCCCATTATC 57.861 43.478 0.00 0.00 38.77 1.75
2970 5738 2.179427 ACTTGGGCTTTAGATTTGGCC 58.821 47.619 0.00 0.00 45.24 5.36
2971 5739 3.961480 AACTTGGGCTTTAGATTTGGC 57.039 42.857 0.00 0.00 0.00 4.52
2972 5740 6.530019 ACATAACTTGGGCTTTAGATTTGG 57.470 37.500 0.00 0.00 0.00 3.28
2973 5741 9.520204 CATAACATAACTTGGGCTTTAGATTTG 57.480 33.333 0.00 0.00 0.00 2.32
2974 5742 9.255029 ACATAACATAACTTGGGCTTTAGATTT 57.745 29.630 0.00 0.00 0.00 2.17
2975 5743 8.823220 ACATAACATAACTTGGGCTTTAGATT 57.177 30.769 0.00 0.00 0.00 2.40
2976 5744 9.338622 GTACATAACATAACTTGGGCTTTAGAT 57.661 33.333 0.00 0.00 0.00 1.98
2977 5745 8.545472 AGTACATAACATAACTTGGGCTTTAGA 58.455 33.333 0.00 0.00 0.00 2.10
2978 5746 8.732746 AGTACATAACATAACTTGGGCTTTAG 57.267 34.615 0.00 0.00 0.00 1.85
2980 5748 9.695155 AATAGTACATAACATAACTTGGGCTTT 57.305 29.630 0.00 0.00 0.00 3.51
2981 5749 9.695155 AAATAGTACATAACATAACTTGGGCTT 57.305 29.630 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.