Multiple sequence alignment - TraesCS5D01G247400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G247400 chr5D 100.000 2528 0 0 1 2528 354839267 354836740 0.000000e+00 4669.0
1 TraesCS5D01G247400 chr5D 80.134 599 73 34 1726 2295 354891824 354891243 3.030000e-109 405.0
2 TraesCS5D01G247400 chr5D 95.283 212 10 0 1726 1937 354030760 354030971 1.120000e-88 337.0
3 TraesCS5D01G247400 chr5D 90.393 229 14 8 1 224 479382887 479382662 6.840000e-76 294.0
4 TraesCS5D01G247400 chr5B 91.278 1502 59 28 688 2140 419621752 419620274 0.000000e+00 1982.0
5 TraesCS5D01G247400 chr5B 96.748 246 7 1 2284 2528 419620018 419619773 2.340000e-110 409.0
6 TraesCS5D01G247400 chr5B 78.140 613 79 35 1726 2295 419645032 419644432 3.120000e-89 339.0
7 TraesCS5D01G247400 chr5B 94.811 212 11 0 1726 1937 418373924 418374135 5.210000e-87 331.0
8 TraesCS5D01G247400 chr5A 88.379 1721 67 49 660 2292 456976584 456974909 0.000000e+00 1947.0
9 TraesCS5D01G247400 chr5A 79.669 605 69 37 1726 2295 457004435 457003850 1.100000e-103 387.0
10 TraesCS5D01G247400 chr5A 78.374 615 68 37 1726 2292 454816412 454817009 3.120000e-89 339.0
11 TraesCS5D01G247400 chr5A 84.706 255 22 7 2284 2528 456974878 456974631 3.250000e-59 239.0
12 TraesCS5D01G247400 chr5A 90.909 44 3 1 632 674 456976658 456976615 9.770000e-05 58.4
13 TraesCS5D01G247400 chr6D 94.175 206 10 2 3 206 106034480 106034275 1.890000e-81 313.0
14 TraesCS5D01G247400 chr6D 93.617 47 3 0 570 616 424544588 424544542 1.250000e-08 71.3
15 TraesCS5D01G247400 chr3B 91.866 209 15 2 1 207 808100858 808101066 8.850000e-75 291.0
16 TraesCS5D01G247400 chr3B 79.231 130 19 8 488 613 723270369 723270244 1.610000e-12 84.2
17 TraesCS5D01G247400 chr3B 78.333 120 20 5 492 607 239733164 239733281 3.490000e-09 73.1
18 TraesCS5D01G247400 chr3D 91.827 208 15 2 1 206 8368128 8367921 3.180000e-74 289.0
19 TraesCS5D01G247400 chr3D 79.389 131 14 8 504 632 114023645 114023526 2.080000e-11 80.5
20 TraesCS5D01G247400 chr3D 80.357 112 16 5 504 614 384005667 384005773 2.080000e-11 80.5
21 TraesCS5D01G247400 chr3D 79.646 113 19 3 504 614 247910190 247910300 7.500000e-11 78.7
22 TraesCS5D01G247400 chr2D 91.827 208 15 2 1 206 114648070 114647863 3.180000e-74 289.0
23 TraesCS5D01G247400 chr2D 91.837 49 4 0 564 612 648237174 648237126 4.510000e-08 69.4
24 TraesCS5D01G247400 chr7D 91.787 207 15 2 1 205 73143689 73143483 1.140000e-73 287.0
25 TraesCS5D01G247400 chrUn 91.304 207 17 1 1 206 35733001 35732795 5.320000e-72 281.0
26 TraesCS5D01G247400 chrUn 91.304 207 17 1 1 206 242149310 242149516 5.320000e-72 281.0
27 TraesCS5D01G247400 chr7A 90.610 213 17 3 1 210 223684382 223684594 1.920000e-71 279.0
28 TraesCS5D01G247400 chr6B 80.165 121 20 4 495 613 544635875 544635993 1.250000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G247400 chr5D 354836740 354839267 2527 True 4669.000000 4669 100.000 1 2528 1 chr5D.!!$R1 2527
1 TraesCS5D01G247400 chr5D 354891243 354891824 581 True 405.000000 405 80.134 1726 2295 1 chr5D.!!$R2 569
2 TraesCS5D01G247400 chr5B 419619773 419621752 1979 True 1195.500000 1982 94.013 688 2528 2 chr5B.!!$R2 1840
3 TraesCS5D01G247400 chr5B 419644432 419645032 600 True 339.000000 339 78.140 1726 2295 1 chr5B.!!$R1 569
4 TraesCS5D01G247400 chr5A 456974631 456976658 2027 True 748.133333 1947 87.998 632 2528 3 chr5A.!!$R2 1896
5 TraesCS5D01G247400 chr5A 457003850 457004435 585 True 387.000000 387 79.669 1726 2295 1 chr5A.!!$R1 569
6 TraesCS5D01G247400 chr5A 454816412 454817009 597 False 339.000000 339 78.374 1726 2292 1 chr5A.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 382 0.030092 AGATAACCTAGGCCTGGGCA 60.03 55.0 33.73 22.44 44.11 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 2542 0.178903 TAACCACTGCAGGTCCCTCT 60.179 55.0 19.93 0.0 42.25 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.106552 CTCCGAGAGACTGAGCCG 58.893 66.667 0.00 0.00 0.00 5.52
18 19 1.450491 CTCCGAGAGACTGAGCCGA 60.450 63.158 0.00 0.00 0.00 5.54
19 20 1.711060 CTCCGAGAGACTGAGCCGAC 61.711 65.000 0.00 0.00 0.00 4.79
20 21 2.041115 CCGAGAGACTGAGCCGACA 61.041 63.158 0.00 0.00 0.00 4.35
21 22 1.380403 CCGAGAGACTGAGCCGACAT 61.380 60.000 0.00 0.00 0.00 3.06
22 23 0.248417 CGAGAGACTGAGCCGACATG 60.248 60.000 0.00 0.00 0.00 3.21
23 24 0.814457 GAGAGACTGAGCCGACATGT 59.186 55.000 0.00 0.00 0.00 3.21
24 25 0.814457 AGAGACTGAGCCGACATGTC 59.186 55.000 16.21 16.21 0.00 3.06
25 26 0.528017 GAGACTGAGCCGACATGTCA 59.472 55.000 24.93 5.36 0.00 3.58
26 27 1.135915 GAGACTGAGCCGACATGTCAT 59.864 52.381 24.93 10.54 0.00 3.06
27 28 1.135915 AGACTGAGCCGACATGTCATC 59.864 52.381 24.93 18.39 0.00 2.92
28 29 1.135915 GACTGAGCCGACATGTCATCT 59.864 52.381 24.93 19.35 0.00 2.90
29 30 1.552337 ACTGAGCCGACATGTCATCTT 59.448 47.619 24.93 7.66 0.00 2.40
30 31 1.931841 CTGAGCCGACATGTCATCTTG 59.068 52.381 24.93 8.54 0.00 3.02
31 32 1.550072 TGAGCCGACATGTCATCTTGA 59.450 47.619 24.93 9.10 0.00 3.02
32 33 2.028203 TGAGCCGACATGTCATCTTGAA 60.028 45.455 24.93 8.41 0.00 2.69
33 34 3.002791 GAGCCGACATGTCATCTTGAAA 58.997 45.455 24.93 0.00 0.00 2.69
34 35 3.614092 AGCCGACATGTCATCTTGAAAT 58.386 40.909 24.93 0.00 0.00 2.17
35 36 4.012374 AGCCGACATGTCATCTTGAAATT 58.988 39.130 24.93 0.00 0.00 1.82
36 37 4.460382 AGCCGACATGTCATCTTGAAATTT 59.540 37.500 24.93 0.00 0.00 1.82
37 38 5.647658 AGCCGACATGTCATCTTGAAATTTA 59.352 36.000 24.93 0.00 0.00 1.40
38 39 5.739161 GCCGACATGTCATCTTGAAATTTAC 59.261 40.000 24.93 0.00 0.00 2.01
39 40 5.959527 CCGACATGTCATCTTGAAATTTACG 59.040 40.000 24.93 6.10 0.00 3.18
40 41 6.183360 CCGACATGTCATCTTGAAATTTACGA 60.183 38.462 24.93 0.00 0.00 3.43
41 42 7.233689 CGACATGTCATCTTGAAATTTACGAA 58.766 34.615 24.93 0.00 0.00 3.85
42 43 7.423598 CGACATGTCATCTTGAAATTTACGAAG 59.576 37.037 24.93 0.00 0.00 3.79
44 45 8.230486 ACATGTCATCTTGAAATTTACGAAGTC 58.770 33.333 0.00 0.00 43.93 3.01
45 46 7.722795 TGTCATCTTGAAATTTACGAAGTCA 57.277 32.000 0.00 0.00 43.93 3.41
46 47 7.572759 TGTCATCTTGAAATTTACGAAGTCAC 58.427 34.615 0.00 0.00 43.93 3.67
47 48 7.015877 GTCATCTTGAAATTTACGAAGTCACC 58.984 38.462 0.00 0.00 43.93 4.02
48 49 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
49 50 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
50 51 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
51 52 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
64 65 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
65 66 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
85 86 2.260743 GGGAACGTCTCGTCCCAC 59.739 66.667 16.67 4.03 35.50 4.61
86 87 2.273912 GGGAACGTCTCGTCCCACT 61.274 63.158 16.67 0.00 35.50 4.00
87 88 1.080705 GGAACGTCTCGTCCCACTG 60.081 63.158 0.00 0.00 39.99 3.66
88 89 1.521450 GGAACGTCTCGTCCCACTGA 61.521 60.000 0.00 0.00 39.99 3.41
89 90 0.313043 GAACGTCTCGTCCCACTGAA 59.687 55.000 0.00 0.00 39.99 3.02
90 91 0.748450 AACGTCTCGTCCCACTGAAA 59.252 50.000 0.00 0.00 39.99 2.69
91 92 0.314302 ACGTCTCGTCCCACTGAAAG 59.686 55.000 0.00 0.00 33.69 2.62
92 93 1.009389 CGTCTCGTCCCACTGAAAGC 61.009 60.000 0.00 0.00 37.60 3.51
93 94 0.033504 GTCTCGTCCCACTGAAAGCA 59.966 55.000 0.00 0.00 37.60 3.91
94 95 0.033504 TCTCGTCCCACTGAAAGCAC 59.966 55.000 0.00 0.00 37.60 4.40
95 96 0.249868 CTCGTCCCACTGAAAGCACA 60.250 55.000 0.00 0.00 37.60 4.57
96 97 0.396435 TCGTCCCACTGAAAGCACAT 59.604 50.000 0.00 0.00 37.60 3.21
97 98 0.798776 CGTCCCACTGAAAGCACATC 59.201 55.000 0.00 0.00 37.60 3.06
98 99 0.798776 GTCCCACTGAAAGCACATCG 59.201 55.000 0.00 0.00 37.60 3.84
99 100 0.955428 TCCCACTGAAAGCACATCGC 60.955 55.000 0.00 0.00 37.60 4.58
110 111 2.184385 GCACATCGCTGAAAATCCTG 57.816 50.000 0.00 0.00 37.77 3.86
111 112 1.739466 GCACATCGCTGAAAATCCTGA 59.261 47.619 0.00 0.00 37.77 3.86
112 113 2.162208 GCACATCGCTGAAAATCCTGAA 59.838 45.455 0.00 0.00 37.77 3.02
113 114 3.366273 GCACATCGCTGAAAATCCTGAAA 60.366 43.478 0.00 0.00 37.77 2.69
114 115 4.676196 GCACATCGCTGAAAATCCTGAAAT 60.676 41.667 0.00 0.00 37.77 2.17
115 116 5.449041 GCACATCGCTGAAAATCCTGAAATA 60.449 40.000 0.00 0.00 37.77 1.40
116 117 6.554419 CACATCGCTGAAAATCCTGAAATAA 58.446 36.000 0.00 0.00 0.00 1.40
117 118 7.028962 CACATCGCTGAAAATCCTGAAATAAA 58.971 34.615 0.00 0.00 0.00 1.40
118 119 7.703621 CACATCGCTGAAAATCCTGAAATAAAT 59.296 33.333 0.00 0.00 0.00 1.40
119 120 7.917505 ACATCGCTGAAAATCCTGAAATAAATC 59.082 33.333 0.00 0.00 0.00 2.17
120 121 6.795399 TCGCTGAAAATCCTGAAATAAATCC 58.205 36.000 0.00 0.00 0.00 3.01
121 122 6.376864 TCGCTGAAAATCCTGAAATAAATCCA 59.623 34.615 0.00 0.00 0.00 3.41
122 123 6.694411 CGCTGAAAATCCTGAAATAAATCCAG 59.306 38.462 0.00 0.00 0.00 3.86
123 124 6.982724 GCTGAAAATCCTGAAATAAATCCAGG 59.017 38.462 0.00 0.00 46.64 4.45
132 133 7.496529 CTGAAATAAATCCAGGAATAAGCGA 57.503 36.000 0.00 0.00 0.00 4.93
133 134 7.496529 TGAAATAAATCCAGGAATAAGCGAG 57.503 36.000 0.00 0.00 0.00 5.03
134 135 5.948992 AATAAATCCAGGAATAAGCGAGC 57.051 39.130 0.00 0.00 0.00 5.03
135 136 3.281727 AAATCCAGGAATAAGCGAGCA 57.718 42.857 0.00 0.00 0.00 4.26
136 137 2.246719 ATCCAGGAATAAGCGAGCAC 57.753 50.000 0.00 0.00 0.00 4.40
137 138 0.178068 TCCAGGAATAAGCGAGCACC 59.822 55.000 0.00 0.00 0.00 5.01
138 139 0.107703 CCAGGAATAAGCGAGCACCA 60.108 55.000 0.00 0.00 0.00 4.17
139 140 1.293924 CAGGAATAAGCGAGCACCAG 58.706 55.000 0.00 0.00 0.00 4.00
140 141 0.179000 AGGAATAAGCGAGCACCAGG 59.821 55.000 0.00 0.00 0.00 4.45
141 142 0.178068 GGAATAAGCGAGCACCAGGA 59.822 55.000 0.00 0.00 0.00 3.86
142 143 1.291132 GAATAAGCGAGCACCAGGAC 58.709 55.000 0.00 0.00 0.00 3.85
143 144 0.905357 AATAAGCGAGCACCAGGACT 59.095 50.000 0.00 0.00 0.00 3.85
144 145 0.905357 ATAAGCGAGCACCAGGACTT 59.095 50.000 0.00 0.00 0.00 3.01
145 146 0.037326 TAAGCGAGCACCAGGACTTG 60.037 55.000 0.00 0.00 0.00 3.16
146 147 1.758440 AAGCGAGCACCAGGACTTGA 61.758 55.000 0.00 0.00 0.00 3.02
147 148 1.739562 GCGAGCACCAGGACTTGAG 60.740 63.158 0.00 0.00 0.00 3.02
148 149 1.739562 CGAGCACCAGGACTTGAGC 60.740 63.158 0.00 0.00 0.00 4.26
149 150 1.376553 GAGCACCAGGACTTGAGCC 60.377 63.158 0.00 0.00 0.00 4.70
150 151 2.360475 GCACCAGGACTTGAGCCC 60.360 66.667 0.00 0.00 0.00 5.19
151 152 2.900106 GCACCAGGACTTGAGCCCT 61.900 63.158 0.00 0.00 0.00 5.19
152 153 1.298014 CACCAGGACTTGAGCCCTC 59.702 63.158 0.00 0.00 0.00 4.30
153 154 2.286523 ACCAGGACTTGAGCCCTCG 61.287 63.158 0.00 0.00 0.00 4.63
154 155 2.286523 CCAGGACTTGAGCCCTCGT 61.287 63.158 0.00 0.00 0.00 4.18
155 156 1.079543 CAGGACTTGAGCCCTCGTG 60.080 63.158 0.00 0.00 0.00 4.35
156 157 2.266055 GGACTTGAGCCCTCGTGG 59.734 66.667 0.00 0.00 37.09 4.94
166 167 2.822399 CCTCGTGGGCTGGGATAC 59.178 66.667 0.00 0.00 0.00 2.24
182 183 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
183 184 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
184 185 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
185 186 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
186 187 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
187 188 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
188 189 2.093447 CACAGTCCCTCTAACCATCCAC 60.093 54.545 0.00 0.00 0.00 4.02
189 190 2.225650 ACAGTCCCTCTAACCATCCACT 60.226 50.000 0.00 0.00 0.00 4.00
190 191 2.432510 CAGTCCCTCTAACCATCCACTC 59.567 54.545 0.00 0.00 0.00 3.51
191 192 2.044492 AGTCCCTCTAACCATCCACTCA 59.956 50.000 0.00 0.00 0.00 3.41
192 193 2.168728 GTCCCTCTAACCATCCACTCAC 59.831 54.545 0.00 0.00 0.00 3.51
193 194 1.137086 CCCTCTAACCATCCACTCACG 59.863 57.143 0.00 0.00 0.00 4.35
194 195 1.137086 CCTCTAACCATCCACTCACGG 59.863 57.143 0.00 0.00 0.00 4.94
195 196 1.137086 CTCTAACCATCCACTCACGGG 59.863 57.143 0.00 0.00 0.00 5.28
196 197 0.902531 CTAACCATCCACTCACGGGT 59.097 55.000 0.00 0.00 0.00 5.28
197 198 1.278127 CTAACCATCCACTCACGGGTT 59.722 52.381 0.00 0.00 43.74 4.11
198 199 0.250727 AACCATCCACTCACGGGTTG 60.251 55.000 0.00 0.00 40.18 3.77
199 200 2.040544 CCATCCACTCACGGGTTGC 61.041 63.158 0.00 0.00 0.00 4.17
200 201 1.003355 CATCCACTCACGGGTTGCT 60.003 57.895 0.00 0.00 0.00 3.91
201 202 0.606401 CATCCACTCACGGGTTGCTT 60.606 55.000 0.00 0.00 0.00 3.91
202 203 0.321653 ATCCACTCACGGGTTGCTTC 60.322 55.000 0.00 0.00 0.00 3.86
203 204 2.317609 CCACTCACGGGTTGCTTCG 61.318 63.158 0.00 0.00 0.00 3.79
204 205 2.665185 ACTCACGGGTTGCTTCGC 60.665 61.111 0.00 0.00 0.00 4.70
205 206 2.664851 CTCACGGGTTGCTTCGCA 60.665 61.111 0.00 0.00 36.47 5.10
206 207 2.031919 TCACGGGTTGCTTCGCAT 59.968 55.556 0.00 0.00 38.76 4.73
207 208 1.577328 CTCACGGGTTGCTTCGCATT 61.577 55.000 0.00 0.00 38.76 3.56
208 209 1.442520 CACGGGTTGCTTCGCATTG 60.443 57.895 0.00 0.00 38.76 2.82
209 210 1.599518 ACGGGTTGCTTCGCATTGA 60.600 52.632 0.00 0.00 38.76 2.57
210 211 1.135315 CGGGTTGCTTCGCATTGAG 59.865 57.895 0.00 0.00 38.76 3.02
211 212 1.298157 CGGGTTGCTTCGCATTGAGA 61.298 55.000 0.00 0.00 38.76 3.27
212 213 0.169009 GGGTTGCTTCGCATTGAGAC 59.831 55.000 0.00 0.00 38.76 3.36
213 214 0.179215 GGTTGCTTCGCATTGAGACG 60.179 55.000 0.00 0.00 38.76 4.18
214 215 0.179215 GTTGCTTCGCATTGAGACGG 60.179 55.000 0.00 0.00 38.76 4.79
215 216 0.320334 TTGCTTCGCATTGAGACGGA 60.320 50.000 0.00 0.00 38.76 4.69
216 217 0.737367 TGCTTCGCATTGAGACGGAG 60.737 55.000 0.00 0.00 37.97 4.63
217 218 0.458543 GCTTCGCATTGAGACGGAGA 60.459 55.000 0.00 0.00 37.04 3.71
218 219 1.804372 GCTTCGCATTGAGACGGAGAT 60.804 52.381 0.00 0.00 37.04 2.75
219 220 2.544685 CTTCGCATTGAGACGGAGATT 58.455 47.619 0.00 0.00 37.04 2.40
220 221 2.672961 TCGCATTGAGACGGAGATTT 57.327 45.000 0.00 0.00 0.00 2.17
221 222 2.270923 TCGCATTGAGACGGAGATTTG 58.729 47.619 0.00 0.00 0.00 2.32
222 223 1.267732 CGCATTGAGACGGAGATTTGC 60.268 52.381 0.00 0.00 0.00 3.68
223 224 2.012673 GCATTGAGACGGAGATTTGCT 58.987 47.619 0.00 0.00 0.00 3.91
224 225 3.198068 GCATTGAGACGGAGATTTGCTA 58.802 45.455 0.00 0.00 0.00 3.49
225 226 3.001736 GCATTGAGACGGAGATTTGCTAC 59.998 47.826 0.00 0.00 0.00 3.58
226 227 3.953712 TTGAGACGGAGATTTGCTACA 57.046 42.857 0.00 0.00 0.00 2.74
227 228 3.232213 TGAGACGGAGATTTGCTACAC 57.768 47.619 0.00 0.00 0.00 2.90
228 229 2.094182 TGAGACGGAGATTTGCTACACC 60.094 50.000 0.00 0.00 0.00 4.16
229 230 2.166664 GAGACGGAGATTTGCTACACCT 59.833 50.000 0.00 0.00 0.00 4.00
230 231 3.362706 AGACGGAGATTTGCTACACCTA 58.637 45.455 0.00 0.00 0.00 3.08
231 232 3.130693 AGACGGAGATTTGCTACACCTAC 59.869 47.826 0.00 0.00 0.00 3.18
232 233 2.159282 ACGGAGATTTGCTACACCTACG 60.159 50.000 0.00 0.00 37.24 3.51
233 234 2.098607 CGGAGATTTGCTACACCTACGA 59.901 50.000 0.00 0.00 33.33 3.43
234 235 3.428452 CGGAGATTTGCTACACCTACGAA 60.428 47.826 0.00 0.00 33.33 3.85
235 236 3.864003 GGAGATTTGCTACACCTACGAAC 59.136 47.826 0.00 0.00 0.00 3.95
236 237 4.491676 GAGATTTGCTACACCTACGAACA 58.508 43.478 0.00 0.00 0.00 3.18
237 238 4.890088 AGATTTGCTACACCTACGAACAA 58.110 39.130 0.00 0.00 0.00 2.83
238 239 5.302360 AGATTTGCTACACCTACGAACAAA 58.698 37.500 0.00 0.00 0.00 2.83
239 240 5.938125 AGATTTGCTACACCTACGAACAAAT 59.062 36.000 0.00 0.00 38.55 2.32
240 241 5.600908 TTTGCTACACCTACGAACAAATC 57.399 39.130 0.00 0.00 0.00 2.17
241 242 4.260139 TGCTACACCTACGAACAAATCA 57.740 40.909 0.00 0.00 0.00 2.57
242 243 4.827692 TGCTACACCTACGAACAAATCAT 58.172 39.130 0.00 0.00 0.00 2.45
243 244 5.968254 TGCTACACCTACGAACAAATCATA 58.032 37.500 0.00 0.00 0.00 2.15
244 245 5.808540 TGCTACACCTACGAACAAATCATAC 59.191 40.000 0.00 0.00 0.00 2.39
245 246 5.808540 GCTACACCTACGAACAAATCATACA 59.191 40.000 0.00 0.00 0.00 2.29
246 247 6.019801 GCTACACCTACGAACAAATCATACAG 60.020 42.308 0.00 0.00 0.00 2.74
247 248 5.175859 ACACCTACGAACAAATCATACAGG 58.824 41.667 0.00 0.00 0.00 4.00
248 249 5.046878 ACACCTACGAACAAATCATACAGGA 60.047 40.000 0.00 0.00 0.00 3.86
249 250 6.049149 CACCTACGAACAAATCATACAGGAT 58.951 40.000 0.00 0.00 0.00 3.24
250 251 6.201044 CACCTACGAACAAATCATACAGGATC 59.799 42.308 0.00 0.00 0.00 3.36
251 252 6.127168 ACCTACGAACAAATCATACAGGATCA 60.127 38.462 0.00 0.00 0.00 2.92
252 253 6.931281 CCTACGAACAAATCATACAGGATCAT 59.069 38.462 0.00 0.00 0.00 2.45
253 254 6.609237 ACGAACAAATCATACAGGATCATG 57.391 37.500 5.68 5.68 0.00 3.07
254 255 5.528690 ACGAACAAATCATACAGGATCATGG 59.471 40.000 12.66 0.00 0.00 3.66
255 256 5.528690 CGAACAAATCATACAGGATCATGGT 59.471 40.000 12.66 0.34 0.00 3.55
256 257 6.038603 CGAACAAATCATACAGGATCATGGTT 59.961 38.462 12.66 3.36 0.00 3.67
257 258 7.226523 CGAACAAATCATACAGGATCATGGTTA 59.773 37.037 12.66 0.00 0.00 2.85
258 259 9.071276 GAACAAATCATACAGGATCATGGTTAT 57.929 33.333 12.66 0.00 0.00 1.89
259 260 8.400184 ACAAATCATACAGGATCATGGTTATG 57.600 34.615 12.66 11.23 35.57 1.90
260 261 7.449395 ACAAATCATACAGGATCATGGTTATGG 59.551 37.037 12.66 2.37 34.97 2.74
261 262 6.957853 ATCATACAGGATCATGGTTATGGA 57.042 37.500 12.66 1.11 34.97 3.41
262 263 6.762077 TCATACAGGATCATGGTTATGGAA 57.238 37.500 12.66 0.00 34.97 3.53
263 264 7.333779 TCATACAGGATCATGGTTATGGAAT 57.666 36.000 12.66 0.00 34.97 3.01
264 265 7.170277 TCATACAGGATCATGGTTATGGAATG 58.830 38.462 12.66 2.95 34.97 2.67
265 266 5.651612 ACAGGATCATGGTTATGGAATGA 57.348 39.130 12.66 0.00 34.97 2.57
266 267 5.628130 ACAGGATCATGGTTATGGAATGAG 58.372 41.667 12.66 0.00 34.02 2.90
267 268 5.370584 ACAGGATCATGGTTATGGAATGAGA 59.629 40.000 12.66 0.00 34.02 3.27
268 269 6.045224 ACAGGATCATGGTTATGGAATGAGAT 59.955 38.462 12.66 0.00 34.02 2.75
269 270 6.374613 CAGGATCATGGTTATGGAATGAGATG 59.625 42.308 0.00 0.00 34.02 2.90
270 271 5.651139 GGATCATGGTTATGGAATGAGATGG 59.349 44.000 0.00 0.00 34.02 3.51
271 272 4.401022 TCATGGTTATGGAATGAGATGGC 58.599 43.478 0.00 0.00 34.97 4.40
272 273 3.949586 TGGTTATGGAATGAGATGGCA 57.050 42.857 0.00 0.00 0.00 4.92
273 274 4.248174 TGGTTATGGAATGAGATGGCAA 57.752 40.909 0.00 0.00 0.00 4.52
274 275 3.953612 TGGTTATGGAATGAGATGGCAAC 59.046 43.478 0.00 0.00 0.00 4.17
275 276 9.923739 TCATGGTTATGGAATGAGATGGCAACA 62.924 40.741 0.00 0.00 42.70 3.33
285 286 3.341270 TGGCAACACTTGGGGAGT 58.659 55.556 0.00 0.00 46.17 3.85
286 287 2.545969 TGGCAACACTTGGGGAGTA 58.454 52.632 0.00 0.00 46.17 2.59
287 288 0.847373 TGGCAACACTTGGGGAGTAA 59.153 50.000 0.00 0.00 46.17 2.24
288 289 1.202879 TGGCAACACTTGGGGAGTAAG 60.203 52.381 0.00 0.00 46.17 2.34
289 290 1.202891 GGCAACACTTGGGGAGTAAGT 60.203 52.381 0.00 0.00 38.84 2.24
292 293 3.957288 CACTTGGGGAGTAAGTGGG 57.043 57.895 9.40 0.00 46.97 4.61
293 294 0.322546 CACTTGGGGAGTAAGTGGGC 60.323 60.000 9.40 0.00 46.97 5.36
294 295 1.303282 CTTGGGGAGTAAGTGGGCC 59.697 63.158 0.00 0.00 0.00 5.80
295 296 2.211468 CTTGGGGAGTAAGTGGGCCC 62.211 65.000 17.59 17.59 39.93 5.80
296 297 2.612746 GGGGAGTAAGTGGGCCCA 60.613 66.667 24.45 24.45 42.52 5.36
297 298 2.006991 GGGGAGTAAGTGGGCCCAT 61.007 63.158 31.45 16.64 42.52 4.00
298 299 1.532238 GGGAGTAAGTGGGCCCATC 59.468 63.158 31.45 21.16 40.39 3.51
299 300 1.532238 GGAGTAAGTGGGCCCATCC 59.468 63.158 31.45 26.40 0.00 3.51
300 301 1.279025 GGAGTAAGTGGGCCCATCCA 61.279 60.000 31.45 13.32 36.21 3.41
301 302 0.846693 GAGTAAGTGGGCCCATCCAT 59.153 55.000 31.45 16.87 39.26 3.41
302 303 0.552848 AGTAAGTGGGCCCATCCATG 59.447 55.000 31.45 0.00 39.26 3.66
303 304 0.550914 GTAAGTGGGCCCATCCATGA 59.449 55.000 31.45 7.76 39.26 3.07
304 305 0.846015 TAAGTGGGCCCATCCATGAG 59.154 55.000 31.45 0.00 39.26 2.90
305 306 0.920763 AAGTGGGCCCATCCATGAGA 60.921 55.000 31.45 0.00 39.26 3.27
306 307 0.700269 AGTGGGCCCATCCATGAGAT 60.700 55.000 31.45 2.59 39.26 2.75
307 308 0.186873 GTGGGCCCATCCATGAGATT 59.813 55.000 31.45 0.00 39.26 2.40
308 309 0.479815 TGGGCCCATCCATGAGATTC 59.520 55.000 24.45 0.00 36.21 2.52
309 310 0.479815 GGGCCCATCCATGAGATTCA 59.520 55.000 19.95 0.00 36.21 2.57
310 311 1.133388 GGGCCCATCCATGAGATTCAA 60.133 52.381 19.95 0.00 36.21 2.69
311 312 2.236766 GGCCCATCCATGAGATTCAAG 58.763 52.381 0.00 0.00 30.59 3.02
312 313 2.236766 GCCCATCCATGAGATTCAAGG 58.763 52.381 0.00 0.00 36.63 3.61
313 314 2.872732 CCCATCCATGAGATTCAAGGG 58.127 52.381 0.00 0.00 36.02 3.95
314 315 2.490351 CCCATCCATGAGATTCAAGGGG 60.490 54.545 0.00 0.00 36.02 4.79
315 316 2.236766 CATCCATGAGATTCAAGGGGC 58.763 52.381 0.00 0.00 36.02 5.80
316 317 0.181114 TCCATGAGATTCAAGGGGCG 59.819 55.000 0.00 0.00 36.02 6.13
317 318 0.820891 CCATGAGATTCAAGGGGCGG 60.821 60.000 0.00 0.00 31.96 6.13
318 319 0.181114 CATGAGATTCAAGGGGCGGA 59.819 55.000 0.00 0.00 0.00 5.54
319 320 1.143813 ATGAGATTCAAGGGGCGGAT 58.856 50.000 0.00 0.00 0.00 4.18
320 321 0.918983 TGAGATTCAAGGGGCGGATT 59.081 50.000 0.00 0.00 0.00 3.01
321 322 2.123589 TGAGATTCAAGGGGCGGATTA 58.876 47.619 0.00 0.00 0.00 1.75
322 323 2.104792 TGAGATTCAAGGGGCGGATTAG 59.895 50.000 0.00 0.00 0.00 1.73
323 324 2.104963 GAGATTCAAGGGGCGGATTAGT 59.895 50.000 0.00 0.00 0.00 2.24
324 325 2.158755 AGATTCAAGGGGCGGATTAGTG 60.159 50.000 0.00 0.00 0.00 2.74
325 326 0.254747 TTCAAGGGGCGGATTAGTGG 59.745 55.000 0.00 0.00 0.00 4.00
326 327 1.152963 CAAGGGGCGGATTAGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
327 328 1.307517 AAGGGGCGGATTAGTGGGA 60.308 57.895 0.00 0.00 0.00 4.37
328 329 1.345715 AAGGGGCGGATTAGTGGGAG 61.346 60.000 0.00 0.00 0.00 4.30
329 330 2.070650 GGGGCGGATTAGTGGGAGT 61.071 63.158 0.00 0.00 0.00 3.85
330 331 1.632965 GGGGCGGATTAGTGGGAGTT 61.633 60.000 0.00 0.00 0.00 3.01
331 332 0.179054 GGGCGGATTAGTGGGAGTTC 60.179 60.000 0.00 0.00 0.00 3.01
332 333 0.529992 GGCGGATTAGTGGGAGTTCG 60.530 60.000 0.00 0.00 0.00 3.95
333 334 0.529992 GCGGATTAGTGGGAGTTCGG 60.530 60.000 0.00 0.00 0.00 4.30
334 335 0.529992 CGGATTAGTGGGAGTTCGGC 60.530 60.000 0.00 0.00 0.00 5.54
335 336 0.179054 GGATTAGTGGGAGTTCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
336 337 0.529992 GATTAGTGGGAGTTCGGCCG 60.530 60.000 22.12 22.12 0.00 6.13
337 338 1.968050 ATTAGTGGGAGTTCGGCCGG 61.968 60.000 27.83 6.80 0.00 6.13
354 355 3.288484 GGCTGGGCCTAACAAAGC 58.712 61.111 4.53 3.53 46.69 3.51
355 356 2.351244 GGCTGGGCCTAACAAAGCC 61.351 63.158 13.83 13.83 46.69 4.35
359 360 4.408378 GGCCTAACAAAGCCCGAA 57.592 55.556 0.00 0.00 43.76 4.30
360 361 2.648593 GGCCTAACAAAGCCCGAAA 58.351 52.632 0.00 0.00 43.76 3.46
361 362 0.242825 GGCCTAACAAAGCCCGAAAC 59.757 55.000 0.00 0.00 43.76 2.78
362 363 0.955905 GCCTAACAAAGCCCGAAACA 59.044 50.000 0.00 0.00 0.00 2.83
363 364 1.068541 GCCTAACAAAGCCCGAAACAG 60.069 52.381 0.00 0.00 0.00 3.16
364 365 2.500229 CCTAACAAAGCCCGAAACAGA 58.500 47.619 0.00 0.00 0.00 3.41
365 366 3.081804 CCTAACAAAGCCCGAAACAGAT 58.918 45.455 0.00 0.00 0.00 2.90
366 367 4.258543 CCTAACAAAGCCCGAAACAGATA 58.741 43.478 0.00 0.00 0.00 1.98
367 368 4.698304 CCTAACAAAGCCCGAAACAGATAA 59.302 41.667 0.00 0.00 0.00 1.75
368 369 4.499037 AACAAAGCCCGAAACAGATAAC 57.501 40.909 0.00 0.00 0.00 1.89
369 370 2.817844 ACAAAGCCCGAAACAGATAACC 59.182 45.455 0.00 0.00 0.00 2.85
370 371 3.081804 CAAAGCCCGAAACAGATAACCT 58.918 45.455 0.00 0.00 0.00 3.50
371 372 4.258543 CAAAGCCCGAAACAGATAACCTA 58.741 43.478 0.00 0.00 0.00 3.08
372 373 3.821421 AGCCCGAAACAGATAACCTAG 57.179 47.619 0.00 0.00 0.00 3.02
373 374 2.434702 AGCCCGAAACAGATAACCTAGG 59.565 50.000 7.41 7.41 0.00 3.02
374 375 2.835027 CCCGAAACAGATAACCTAGGC 58.165 52.381 9.30 0.00 0.00 3.93
375 376 2.484947 CCCGAAACAGATAACCTAGGCC 60.485 54.545 9.30 0.00 0.00 5.19
376 377 2.434702 CCGAAACAGATAACCTAGGCCT 59.565 50.000 11.78 11.78 0.00 5.19
377 378 3.458189 CGAAACAGATAACCTAGGCCTG 58.542 50.000 17.99 13.29 0.00 4.85
378 379 3.741388 CGAAACAGATAACCTAGGCCTGG 60.741 52.174 17.99 13.68 0.00 4.45
379 380 1.807814 ACAGATAACCTAGGCCTGGG 58.192 55.000 32.36 32.36 37.24 4.45
380 381 0.398318 CAGATAACCTAGGCCTGGGC 59.602 60.000 33.73 17.99 41.06 5.36
381 382 0.030092 AGATAACCTAGGCCTGGGCA 60.030 55.000 33.73 22.44 44.11 5.36
382 383 0.108774 GATAACCTAGGCCTGGGCAC 59.891 60.000 33.73 18.36 44.11 5.01
383 384 1.696097 ATAACCTAGGCCTGGGCACG 61.696 60.000 33.73 11.77 44.11 5.34
408 409 3.927555 CCGTCAGGCCTAGTTTTCA 57.072 52.632 3.98 0.00 0.00 2.69
409 410 1.726853 CCGTCAGGCCTAGTTTTCAG 58.273 55.000 3.98 0.00 0.00 3.02
410 411 1.676014 CCGTCAGGCCTAGTTTTCAGG 60.676 57.143 3.98 0.00 36.16 3.86
417 418 1.646189 CCTAGTTTTCAGGCTCGAGC 58.354 55.000 29.38 29.38 41.14 5.03
418 419 1.205893 CCTAGTTTTCAGGCTCGAGCT 59.794 52.381 34.46 19.07 41.70 4.09
419 420 2.535331 CTAGTTTTCAGGCTCGAGCTC 58.465 52.381 34.46 24.39 41.70 4.09
420 421 0.389166 AGTTTTCAGGCTCGAGCTCG 60.389 55.000 34.46 30.03 41.70 5.03
421 422 1.079819 TTTTCAGGCTCGAGCTCGG 60.080 57.895 34.46 24.78 41.70 4.63
422 423 3.649277 TTTCAGGCTCGAGCTCGGC 62.649 63.158 34.46 31.56 41.70 5.54
427 428 4.992294 GCTCGAGCTCGGCCGATC 62.992 72.222 33.98 25.87 40.29 3.69
428 429 3.586961 CTCGAGCTCGGCCGATCA 61.587 66.667 33.98 13.49 40.29 2.92
429 430 3.534970 CTCGAGCTCGGCCGATCAG 62.535 68.421 33.98 21.73 40.29 2.90
430 431 3.893763 CGAGCTCGGCCGATCAGT 61.894 66.667 31.19 13.56 35.37 3.41
431 432 2.026879 GAGCTCGGCCGATCAGTC 59.973 66.667 31.19 18.33 0.00 3.51
432 433 2.755876 AGCTCGGCCGATCAGTCA 60.756 61.111 31.19 3.84 0.00 3.41
433 434 2.184322 GCTCGGCCGATCAGTCAA 59.816 61.111 31.19 2.93 0.00 3.18
434 435 1.447838 GCTCGGCCGATCAGTCAAA 60.448 57.895 31.19 2.04 0.00 2.69
435 436 1.019278 GCTCGGCCGATCAGTCAAAA 61.019 55.000 31.19 1.15 0.00 2.44
436 437 1.438651 CTCGGCCGATCAGTCAAAAA 58.561 50.000 31.19 0.52 0.00 1.94
437 438 1.394917 CTCGGCCGATCAGTCAAAAAG 59.605 52.381 31.19 8.41 0.00 2.27
438 439 0.179189 CGGCCGATCAGTCAAAAAGC 60.179 55.000 24.07 0.00 0.00 3.51
439 440 0.171231 GGCCGATCAGTCAAAAAGCC 59.829 55.000 0.00 0.00 0.00 4.35
440 441 0.171231 GCCGATCAGTCAAAAAGCCC 59.829 55.000 0.00 0.00 0.00 5.19
441 442 1.533625 CCGATCAGTCAAAAAGCCCA 58.466 50.000 0.00 0.00 0.00 5.36
442 443 2.094675 CCGATCAGTCAAAAAGCCCAT 58.905 47.619 0.00 0.00 0.00 4.00
443 444 2.098117 CCGATCAGTCAAAAAGCCCATC 59.902 50.000 0.00 0.00 0.00 3.51
444 445 2.223112 CGATCAGTCAAAAAGCCCATCG 60.223 50.000 0.00 0.00 0.00 3.84
445 446 1.533625 TCAGTCAAAAAGCCCATCGG 58.466 50.000 0.00 0.00 0.00 4.18
455 456 4.878878 CCCATCGGGCCTAGTTTC 57.121 61.111 0.84 0.00 35.35 2.78
456 457 1.148498 CCCATCGGGCCTAGTTTCC 59.852 63.158 0.84 0.00 35.35 3.13
457 458 1.632018 CCCATCGGGCCTAGTTTCCA 61.632 60.000 0.84 0.00 35.35 3.53
458 459 0.254747 CCATCGGGCCTAGTTTCCAA 59.745 55.000 0.84 0.00 0.00 3.53
459 460 1.668419 CATCGGGCCTAGTTTCCAAG 58.332 55.000 0.84 0.00 0.00 3.61
460 461 1.209504 CATCGGGCCTAGTTTCCAAGA 59.790 52.381 0.84 0.00 0.00 3.02
461 462 0.611714 TCGGGCCTAGTTTCCAAGAC 59.388 55.000 0.84 0.00 0.00 3.01
462 463 0.392595 CGGGCCTAGTTTCCAAGACC 60.393 60.000 0.84 0.00 0.00 3.85
463 464 0.696501 GGGCCTAGTTTCCAAGACCA 59.303 55.000 0.84 0.00 0.00 4.02
464 465 1.074889 GGGCCTAGTTTCCAAGACCAA 59.925 52.381 0.84 0.00 0.00 3.67
465 466 2.437413 GGCCTAGTTTCCAAGACCAAG 58.563 52.381 0.00 0.00 0.00 3.61
466 467 1.813178 GCCTAGTTTCCAAGACCAAGC 59.187 52.381 0.00 0.00 0.00 4.01
467 468 2.437413 CCTAGTTTCCAAGACCAAGCC 58.563 52.381 0.00 0.00 0.00 4.35
468 469 2.437413 CTAGTTTCCAAGACCAAGCCC 58.563 52.381 0.00 0.00 0.00 5.19
469 470 0.555769 AGTTTCCAAGACCAAGCCCA 59.444 50.000 0.00 0.00 0.00 5.36
470 471 1.063266 AGTTTCCAAGACCAAGCCCAA 60.063 47.619 0.00 0.00 0.00 4.12
471 472 1.068588 GTTTCCAAGACCAAGCCCAAC 59.931 52.381 0.00 0.00 0.00 3.77
472 473 0.469144 TTCCAAGACCAAGCCCAACC 60.469 55.000 0.00 0.00 0.00 3.77
473 474 1.908299 CCAAGACCAAGCCCAACCC 60.908 63.158 0.00 0.00 0.00 4.11
474 475 2.115266 AAGACCAAGCCCAACCCG 59.885 61.111 0.00 0.00 0.00 5.28
475 476 2.763645 AAGACCAAGCCCAACCCGT 61.764 57.895 0.00 0.00 0.00 5.28
476 477 2.671963 GACCAAGCCCAACCCGTC 60.672 66.667 0.00 0.00 0.00 4.79
477 478 3.485346 GACCAAGCCCAACCCGTCA 62.485 63.158 0.00 0.00 0.00 4.35
478 479 2.672996 CCAAGCCCAACCCGTCAG 60.673 66.667 0.00 0.00 0.00 3.51
479 480 2.113139 CAAGCCCAACCCGTCAGT 59.887 61.111 0.00 0.00 0.00 3.41
480 481 1.966451 CAAGCCCAACCCGTCAGTC 60.966 63.158 0.00 0.00 0.00 3.51
481 482 2.448582 AAGCCCAACCCGTCAGTCA 61.449 57.895 0.00 0.00 0.00 3.41
482 483 1.990160 AAGCCCAACCCGTCAGTCAA 61.990 55.000 0.00 0.00 0.00 3.18
483 484 1.527380 GCCCAACCCGTCAGTCAAA 60.527 57.895 0.00 0.00 0.00 2.69
484 485 1.104577 GCCCAACCCGTCAGTCAAAA 61.105 55.000 0.00 0.00 0.00 2.44
485 486 1.394618 CCCAACCCGTCAGTCAAAAA 58.605 50.000 0.00 0.00 0.00 1.94
501 502 2.397044 AAAAACCCATCAGGCCTTGA 57.603 45.000 0.00 4.69 40.58 3.02
502 503 2.397044 AAAACCCATCAGGCCTTGAA 57.603 45.000 0.00 0.00 39.77 2.69
503 504 1.632589 AAACCCATCAGGCCTTGAAC 58.367 50.000 0.00 0.00 39.77 3.18
504 505 0.251787 AACCCATCAGGCCTTGAACC 60.252 55.000 0.00 0.00 39.77 3.62
505 506 1.750399 CCCATCAGGCCTTGAACCG 60.750 63.158 0.00 0.00 39.77 4.44
506 507 1.750399 CCATCAGGCCTTGAACCGG 60.750 63.158 0.00 0.00 39.77 5.28
507 508 1.750399 CATCAGGCCTTGAACCGGG 60.750 63.158 0.00 0.00 39.77 5.73
508 509 3.645268 ATCAGGCCTTGAACCGGGC 62.645 63.158 0.00 0.00 46.89 6.13
512 513 4.035102 GCCTTGAACCGGGCCTCT 62.035 66.667 6.32 0.00 42.30 3.69
513 514 2.757077 CCTTGAACCGGGCCTCTT 59.243 61.111 6.32 0.00 0.00 2.85
514 515 1.377333 CCTTGAACCGGGCCTCTTC 60.377 63.158 6.32 0.00 0.00 2.87
515 516 1.377333 CTTGAACCGGGCCTCTTCC 60.377 63.158 6.32 0.00 0.00 3.46
516 517 1.842381 CTTGAACCGGGCCTCTTCCT 61.842 60.000 6.32 0.00 0.00 3.36
517 518 1.423794 TTGAACCGGGCCTCTTCCTT 61.424 55.000 6.32 0.00 0.00 3.36
518 519 0.545787 TGAACCGGGCCTCTTCCTTA 60.546 55.000 6.32 0.00 0.00 2.69
519 520 0.616891 GAACCGGGCCTCTTCCTTAA 59.383 55.000 6.32 0.00 0.00 1.85
520 521 1.003928 GAACCGGGCCTCTTCCTTAAA 59.996 52.381 6.32 0.00 0.00 1.52
521 522 1.296002 ACCGGGCCTCTTCCTTAAAT 58.704 50.000 6.32 0.00 0.00 1.40
522 523 1.639108 ACCGGGCCTCTTCCTTAAATT 59.361 47.619 6.32 0.00 0.00 1.82
523 524 2.848071 ACCGGGCCTCTTCCTTAAATTA 59.152 45.455 6.32 0.00 0.00 1.40
524 525 3.211865 CCGGGCCTCTTCCTTAAATTAC 58.788 50.000 0.84 0.00 0.00 1.89
525 526 3.371166 CCGGGCCTCTTCCTTAAATTACA 60.371 47.826 0.84 0.00 0.00 2.41
526 527 4.266714 CGGGCCTCTTCCTTAAATTACAA 58.733 43.478 0.84 0.00 0.00 2.41
527 528 4.703093 CGGGCCTCTTCCTTAAATTACAAA 59.297 41.667 0.84 0.00 0.00 2.83
528 529 5.359860 CGGGCCTCTTCCTTAAATTACAAAT 59.640 40.000 0.84 0.00 0.00 2.32
529 530 6.544564 CGGGCCTCTTCCTTAAATTACAAATA 59.455 38.462 0.84 0.00 0.00 1.40
530 531 7.230712 CGGGCCTCTTCCTTAAATTACAAATAT 59.769 37.037 0.84 0.00 0.00 1.28
531 532 8.360390 GGGCCTCTTCCTTAAATTACAAATATG 58.640 37.037 0.84 0.00 0.00 1.78
532 533 9.131791 GGCCTCTTCCTTAAATTACAAATATGA 57.868 33.333 0.00 0.00 0.00 2.15
533 534 9.952188 GCCTCTTCCTTAAATTACAAATATGAC 57.048 33.333 0.00 0.00 0.00 3.06
537 538 9.651718 CTTCCTTAAATTACAAATATGACGAGC 57.348 33.333 0.00 0.00 0.00 5.03
538 539 8.149973 TCCTTAAATTACAAATATGACGAGCC 57.850 34.615 0.00 0.00 0.00 4.70
539 540 7.227910 TCCTTAAATTACAAATATGACGAGCCC 59.772 37.037 0.00 0.00 0.00 5.19
540 541 7.012894 CCTTAAATTACAAATATGACGAGCCCA 59.987 37.037 0.00 0.00 0.00 5.36
541 542 6.767524 AAATTACAAATATGACGAGCCCAA 57.232 33.333 0.00 0.00 0.00 4.12
542 543 6.959639 AATTACAAATATGACGAGCCCAAT 57.040 33.333 0.00 0.00 0.00 3.16
543 544 6.560253 ATTACAAATATGACGAGCCCAATC 57.440 37.500 0.00 0.00 0.00 2.67
544 545 3.214328 ACAAATATGACGAGCCCAATCC 58.786 45.455 0.00 0.00 0.00 3.01
545 546 3.117888 ACAAATATGACGAGCCCAATCCT 60.118 43.478 0.00 0.00 0.00 3.24
546 547 2.847327 ATATGACGAGCCCAATCCTG 57.153 50.000 0.00 0.00 0.00 3.86
547 548 0.106708 TATGACGAGCCCAATCCTGC 59.893 55.000 0.00 0.00 0.00 4.85
548 549 2.514824 GACGAGCCCAATCCTGCC 60.515 66.667 0.00 0.00 0.00 4.85
549 550 4.473520 ACGAGCCCAATCCTGCCG 62.474 66.667 0.00 0.00 0.00 5.69
550 551 4.473520 CGAGCCCAATCCTGCCGT 62.474 66.667 0.00 0.00 0.00 5.68
551 552 2.044946 GAGCCCAATCCTGCCGTT 60.045 61.111 0.00 0.00 0.00 4.44
552 553 2.361610 AGCCCAATCCTGCCGTTG 60.362 61.111 0.00 0.00 0.00 4.10
553 554 4.133796 GCCCAATCCTGCCGTTGC 62.134 66.667 0.00 0.00 38.26 4.17
554 555 3.451894 CCCAATCCTGCCGTTGCC 61.452 66.667 0.00 0.00 36.33 4.52
555 556 3.451894 CCAATCCTGCCGTTGCCC 61.452 66.667 0.00 0.00 36.33 5.36
556 557 3.814268 CAATCCTGCCGTTGCCCG 61.814 66.667 0.00 0.00 36.33 6.13
557 558 4.028490 AATCCTGCCGTTGCCCGA 62.028 61.111 0.00 0.00 39.56 5.14
558 559 4.778143 ATCCTGCCGTTGCCCGAC 62.778 66.667 0.00 0.00 39.56 4.79
561 562 4.077184 CTGCCGTTGCCCGACCTA 62.077 66.667 0.00 0.00 39.56 3.08
562 563 3.385749 CTGCCGTTGCCCGACCTAT 62.386 63.158 0.00 0.00 39.56 2.57
563 564 2.895372 GCCGTTGCCCGACCTATG 60.895 66.667 0.00 0.00 39.56 2.23
564 565 2.203015 CCGTTGCCCGACCTATGG 60.203 66.667 0.00 0.00 39.56 2.74
569 570 2.908015 GCCCGACCTATGGCTGAA 59.092 61.111 0.00 0.00 44.46 3.02
570 571 1.223487 GCCCGACCTATGGCTGAAA 59.777 57.895 0.00 0.00 44.46 2.69
571 572 0.393808 GCCCGACCTATGGCTGAAAA 60.394 55.000 0.00 0.00 44.46 2.29
572 573 1.953311 GCCCGACCTATGGCTGAAAAA 60.953 52.381 0.00 0.00 44.46 1.94
573 574 1.743394 CCCGACCTATGGCTGAAAAAC 59.257 52.381 0.00 0.00 0.00 2.43
574 575 2.618045 CCCGACCTATGGCTGAAAAACT 60.618 50.000 0.00 0.00 0.00 2.66
575 576 3.370103 CCCGACCTATGGCTGAAAAACTA 60.370 47.826 0.00 0.00 0.00 2.24
576 577 3.871594 CCGACCTATGGCTGAAAAACTAG 59.128 47.826 0.00 0.00 0.00 2.57
577 578 3.871594 CGACCTATGGCTGAAAAACTAGG 59.128 47.826 0.00 0.00 33.49 3.02
578 579 3.621558 ACCTATGGCTGAAAAACTAGGC 58.378 45.455 0.00 0.00 39.67 3.93
579 580 2.952310 CCTATGGCTGAAAAACTAGGCC 59.048 50.000 0.00 0.00 42.73 5.19
580 581 1.852633 ATGGCTGAAAAACTAGGCCC 58.147 50.000 0.00 0.00 41.84 5.80
581 582 0.480690 TGGCTGAAAAACTAGGCCCA 59.519 50.000 0.00 0.00 41.84 5.36
582 583 1.177401 GGCTGAAAAACTAGGCCCAG 58.823 55.000 0.00 0.00 37.12 4.45
583 584 1.177401 GCTGAAAAACTAGGCCCAGG 58.823 55.000 2.40 0.00 0.00 4.45
584 585 1.177401 CTGAAAAACTAGGCCCAGGC 58.823 55.000 2.40 0.00 41.06 4.85
619 620 4.853142 TCGGGCCGGGCTGTAGAT 62.853 66.667 33.53 0.00 0.00 1.98
620 621 4.609018 CGGGCCGGGCTGTAGATG 62.609 72.222 28.10 5.77 0.00 2.90
621 622 4.256180 GGGCCGGGCTGTAGATGG 62.256 72.222 28.80 0.00 0.00 3.51
622 623 4.937431 GGCCGGGCTGTAGATGGC 62.937 72.222 22.87 0.00 44.98 4.40
623 624 4.937431 GCCGGGCTGTAGATGGCC 62.937 72.222 12.87 0.00 46.89 5.36
759 807 2.679092 TGGCCTGAATCAGCCCAG 59.321 61.111 9.08 0.00 33.90 4.45
914 983 3.680196 GCAAAGCAACCAAGGTAAACCAA 60.680 43.478 1.26 0.00 38.89 3.67
916 985 3.812156 AGCAACCAAGGTAAACCAAAC 57.188 42.857 1.26 0.00 38.89 2.93
919 988 3.739830 GCAACCAAGGTAAACCAAACCAG 60.740 47.826 1.26 0.00 39.64 4.00
920 989 3.673543 ACCAAGGTAAACCAAACCAGA 57.326 42.857 1.26 0.00 39.64 3.86
923 992 2.955660 CAAGGTAAACCAAACCAGAGCA 59.044 45.455 1.26 0.00 39.64 4.26
924 993 2.583143 AGGTAAACCAAACCAGAGCAC 58.417 47.619 1.26 0.00 39.64 4.40
926 995 1.265905 GTAAACCAAACCAGAGCACCG 59.734 52.381 0.00 0.00 0.00 4.94
1128 1205 4.547905 GTCTACGCCGCGCTGCTA 62.548 66.667 21.59 11.56 0.00 3.49
1536 1619 2.730402 GCGGCTGATCTGAAAGCTTTTC 60.730 50.000 14.05 7.40 39.46 2.29
1537 1620 2.475187 CGGCTGATCTGAAAGCTTTTCG 60.475 50.000 14.05 7.69 39.46 3.46
1543 1627 4.452455 TGATCTGAAAGCTTTTCGAGTTCC 59.548 41.667 14.05 0.00 0.00 3.62
1595 1693 7.083858 TGTTGCTAATTTCATTTGTAGTCTGC 58.916 34.615 0.00 0.00 0.00 4.26
1655 1753 6.039382 GGAAGTTCTTGTTTCTGTAATGGTGT 59.961 38.462 2.25 0.00 0.00 4.16
1724 1836 2.251642 GCTGTGTTCGGCGAGGTTT 61.252 57.895 10.46 0.00 36.18 3.27
1748 1869 2.257980 CGCTTGCGCCATTTCCAA 59.742 55.556 4.18 0.00 0.00 3.53
1868 1997 1.210931 GTCCATGTCCGTCGACGAA 59.789 57.895 37.65 18.28 42.37 3.85
1945 2074 1.581954 CCTCGCTCTCGTTGTCACT 59.418 57.895 0.00 0.00 36.96 3.41
1978 2140 2.024846 CCTCCTTCTCCTCCTCAGTACA 60.025 54.545 0.00 0.00 0.00 2.90
2069 2231 2.740055 GAGTCCACGCTGCACCTG 60.740 66.667 0.00 0.00 0.00 4.00
2102 2264 1.765314 CTCATCTCCCGGTTCCTCATT 59.235 52.381 0.00 0.00 0.00 2.57
2128 2290 3.208594 TCAGTATCACCTGAATGCATGC 58.791 45.455 11.82 11.82 38.49 4.06
2129 2291 2.946990 CAGTATCACCTGAATGCATGCA 59.053 45.455 25.04 25.04 34.23 3.96
2140 2302 6.267699 ACCTGAATGCATGCAGTATACTACTA 59.732 38.462 29.18 0.00 37.23 1.82
2141 2303 6.810676 CCTGAATGCATGCAGTATACTACTAG 59.189 42.308 29.18 9.43 37.23 2.57
2143 2305 5.728637 ATGCATGCAGTATACTACTAGCA 57.271 39.130 26.69 18.75 42.48 3.49
2145 2307 3.914966 GCATGCAGTATACTACTAGCACG 59.085 47.826 14.21 10.28 41.75 5.34
2149 2311 5.125356 TGCAGTATACTACTAGCACGGTTA 58.875 41.667 4.74 0.00 37.66 2.85
2152 2314 6.425504 CAGTATACTACTAGCACGGTTACAC 58.574 44.000 4.74 0.00 37.23 2.90
2155 2317 1.739466 CTACTAGCACGGTTACACGGA 59.261 52.381 0.00 0.00 38.39 4.69
2156 2318 1.180029 ACTAGCACGGTTACACGGAT 58.820 50.000 0.00 0.00 38.39 4.18
2159 2321 2.746803 GCACGGTTACACGGATGCC 61.747 63.158 0.00 0.00 38.39 4.40
2244 2488 4.244802 GAGCTCGTCCTCCTCGCG 62.245 72.222 0.00 0.00 0.00 5.87
2299 2549 3.151022 CCGAGGCAGGAGAGGGAC 61.151 72.222 0.00 0.00 0.00 4.46
2368 2660 4.166011 GGCATTGCTCACGCGGTC 62.166 66.667 12.47 0.00 39.65 4.79
2371 2663 2.809601 ATTGCTCACGCGGTCGAC 60.810 61.111 12.47 7.13 39.65 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.450491 TCGGCTCAGTCTCTCGGAG 60.450 63.158 0.00 0.00 40.44 4.63
1 2 1.745864 GTCGGCTCAGTCTCTCGGA 60.746 63.158 0.00 0.00 0.00 4.55
2 3 1.380403 ATGTCGGCTCAGTCTCTCGG 61.380 60.000 0.00 0.00 0.00 4.63
3 4 0.248417 CATGTCGGCTCAGTCTCTCG 60.248 60.000 0.00 0.00 0.00 4.04
4 5 0.814457 ACATGTCGGCTCAGTCTCTC 59.186 55.000 0.00 0.00 0.00 3.20
5 6 0.814457 GACATGTCGGCTCAGTCTCT 59.186 55.000 10.69 0.00 0.00 3.10
6 7 0.528017 TGACATGTCGGCTCAGTCTC 59.472 55.000 20.54 0.00 0.00 3.36
7 8 1.135915 GATGACATGTCGGCTCAGTCT 59.864 52.381 20.54 0.00 0.00 3.24
8 9 1.135915 AGATGACATGTCGGCTCAGTC 59.864 52.381 20.54 9.53 0.00 3.51
9 10 1.189752 AGATGACATGTCGGCTCAGT 58.810 50.000 20.54 1.05 0.00 3.41
10 11 1.931841 CAAGATGACATGTCGGCTCAG 59.068 52.381 20.54 11.92 0.00 3.35
11 12 1.550072 TCAAGATGACATGTCGGCTCA 59.450 47.619 20.54 3.95 0.00 4.26
12 13 2.299993 TCAAGATGACATGTCGGCTC 57.700 50.000 20.54 16.00 0.00 4.70
13 14 2.768253 TTCAAGATGACATGTCGGCT 57.232 45.000 20.54 16.38 0.00 5.52
14 15 4.361451 AATTTCAAGATGACATGTCGGC 57.639 40.909 20.54 14.44 0.00 5.54
15 16 5.959527 CGTAAATTTCAAGATGACATGTCGG 59.040 40.000 20.54 7.94 0.00 4.79
16 17 6.761117 TCGTAAATTTCAAGATGACATGTCG 58.239 36.000 20.54 6.37 0.00 4.35
17 18 8.230486 ACTTCGTAAATTTCAAGATGACATGTC 58.770 33.333 19.27 19.27 0.00 3.06
18 19 8.099364 ACTTCGTAAATTTCAAGATGACATGT 57.901 30.769 0.00 0.00 0.00 3.21
19 20 8.229811 TGACTTCGTAAATTTCAAGATGACATG 58.770 33.333 0.00 0.00 0.00 3.21
20 21 8.230486 GTGACTTCGTAAATTTCAAGATGACAT 58.770 33.333 0.00 0.00 0.00 3.06
21 22 7.307751 GGTGACTTCGTAAATTTCAAGATGACA 60.308 37.037 0.00 0.26 0.00 3.58
22 23 7.015877 GGTGACTTCGTAAATTTCAAGATGAC 58.984 38.462 0.00 0.00 0.00 3.06
23 24 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
24 25 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
25 26 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
26 27 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
27 28 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
28 29 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
29 30 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
30 31 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
31 32 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
32 33 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
33 34 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
34 35 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
35 36 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
36 37 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
37 38 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
38 39 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
39 40 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
42 43 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
44 45 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
47 48 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
70 71 0.313043 TTCAGTGGGACGAGACGTTC 59.687 55.000 0.00 0.00 41.37 3.95
71 72 0.748450 TTTCAGTGGGACGAGACGTT 59.252 50.000 0.00 0.00 41.37 3.99
72 73 0.314302 CTTTCAGTGGGACGAGACGT 59.686 55.000 0.00 0.00 45.10 4.34
73 74 1.009389 GCTTTCAGTGGGACGAGACG 61.009 60.000 0.00 0.00 0.00 4.18
74 75 0.033504 TGCTTTCAGTGGGACGAGAC 59.966 55.000 0.00 0.00 0.00 3.36
75 76 0.033504 GTGCTTTCAGTGGGACGAGA 59.966 55.000 0.00 0.00 0.00 4.04
76 77 0.249868 TGTGCTTTCAGTGGGACGAG 60.250 55.000 0.00 0.00 0.00 4.18
77 78 0.396435 ATGTGCTTTCAGTGGGACGA 59.604 50.000 0.00 0.00 0.00 4.20
78 79 0.798776 GATGTGCTTTCAGTGGGACG 59.201 55.000 0.00 0.00 0.00 4.79
79 80 0.798776 CGATGTGCTTTCAGTGGGAC 59.201 55.000 0.00 0.00 0.00 4.46
80 81 0.955428 GCGATGTGCTTTCAGTGGGA 60.955 55.000 0.00 0.00 41.73 4.37
81 82 1.503542 GCGATGTGCTTTCAGTGGG 59.496 57.895 0.00 0.00 41.73 4.61
91 92 1.739466 TCAGGATTTTCAGCGATGTGC 59.261 47.619 0.00 0.00 46.98 4.57
92 93 4.424061 TTTCAGGATTTTCAGCGATGTG 57.576 40.909 0.00 0.00 0.00 3.21
93 94 6.757897 TTATTTCAGGATTTTCAGCGATGT 57.242 33.333 0.00 0.00 0.00 3.06
94 95 7.380602 GGATTTATTTCAGGATTTTCAGCGATG 59.619 37.037 0.00 0.00 0.00 3.84
95 96 7.068593 TGGATTTATTTCAGGATTTTCAGCGAT 59.931 33.333 0.00 0.00 0.00 4.58
96 97 6.376864 TGGATTTATTTCAGGATTTTCAGCGA 59.623 34.615 0.00 0.00 0.00 4.93
97 98 6.563422 TGGATTTATTTCAGGATTTTCAGCG 58.437 36.000 0.00 0.00 0.00 5.18
98 99 7.998753 CTGGATTTATTTCAGGATTTTCAGC 57.001 36.000 0.00 0.00 0.00 4.26
107 108 6.486657 TCGCTTATTCCTGGATTTATTTCAGG 59.513 38.462 0.00 0.00 46.91 3.86
108 109 7.496529 TCGCTTATTCCTGGATTTATTTCAG 57.503 36.000 0.00 0.00 0.00 3.02
109 110 6.017109 GCTCGCTTATTCCTGGATTTATTTCA 60.017 38.462 0.00 0.00 0.00 2.69
110 111 6.017109 TGCTCGCTTATTCCTGGATTTATTTC 60.017 38.462 0.00 0.00 0.00 2.17
111 112 5.827797 TGCTCGCTTATTCCTGGATTTATTT 59.172 36.000 0.00 0.00 0.00 1.40
112 113 5.239525 GTGCTCGCTTATTCCTGGATTTATT 59.760 40.000 0.00 0.00 0.00 1.40
113 114 4.757149 GTGCTCGCTTATTCCTGGATTTAT 59.243 41.667 0.00 0.00 0.00 1.40
114 115 4.127171 GTGCTCGCTTATTCCTGGATTTA 58.873 43.478 0.00 0.00 0.00 1.40
115 116 2.945668 GTGCTCGCTTATTCCTGGATTT 59.054 45.455 0.00 0.00 0.00 2.17
116 117 2.565841 GTGCTCGCTTATTCCTGGATT 58.434 47.619 0.00 0.00 0.00 3.01
117 118 1.202698 GGTGCTCGCTTATTCCTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
118 119 0.178068 GGTGCTCGCTTATTCCTGGA 59.822 55.000 0.00 0.00 0.00 3.86
119 120 0.107703 TGGTGCTCGCTTATTCCTGG 60.108 55.000 0.00 0.00 0.00 4.45
120 121 1.293924 CTGGTGCTCGCTTATTCCTG 58.706 55.000 0.00 0.00 0.00 3.86
121 122 0.179000 CCTGGTGCTCGCTTATTCCT 59.821 55.000 0.00 0.00 0.00 3.36
122 123 0.178068 TCCTGGTGCTCGCTTATTCC 59.822 55.000 0.00 0.00 0.00 3.01
123 124 1.134670 AGTCCTGGTGCTCGCTTATTC 60.135 52.381 0.00 0.00 0.00 1.75
124 125 0.905357 AGTCCTGGTGCTCGCTTATT 59.095 50.000 0.00 0.00 0.00 1.40
125 126 0.905357 AAGTCCTGGTGCTCGCTTAT 59.095 50.000 0.00 0.00 0.00 1.73
126 127 0.037326 CAAGTCCTGGTGCTCGCTTA 60.037 55.000 0.00 0.00 0.00 3.09
127 128 1.302033 CAAGTCCTGGTGCTCGCTT 60.302 57.895 0.00 0.00 0.00 4.68
128 129 2.164865 CTCAAGTCCTGGTGCTCGCT 62.165 60.000 0.00 0.00 0.00 4.93
129 130 1.739562 CTCAAGTCCTGGTGCTCGC 60.740 63.158 0.00 0.00 0.00 5.03
130 131 1.739562 GCTCAAGTCCTGGTGCTCG 60.740 63.158 0.00 0.00 0.00 5.03
131 132 1.376553 GGCTCAAGTCCTGGTGCTC 60.377 63.158 0.00 0.00 0.00 4.26
132 133 2.753029 GGCTCAAGTCCTGGTGCT 59.247 61.111 0.00 0.00 0.00 4.40
133 134 2.360475 GGGCTCAAGTCCTGGTGC 60.360 66.667 0.00 0.00 36.72 5.01
139 140 2.266055 CCACGAGGGCTCAAGTCC 59.734 66.667 0.00 0.00 40.99 3.85
149 150 2.808206 GGTATCCCAGCCCACGAGG 61.808 68.421 0.00 0.00 39.47 4.63
150 151 2.063979 TGGTATCCCAGCCCACGAG 61.064 63.158 0.00 0.00 35.17 4.18
151 152 2.039787 TGGTATCCCAGCCCACGA 59.960 61.111 0.00 0.00 35.17 4.35
152 153 2.189521 GTGGTATCCCAGCCCACG 59.810 66.667 0.00 0.00 42.94 4.94
154 155 1.229820 ACTGTGGTATCCCAGCCCA 60.230 57.895 0.00 0.00 42.94 5.36
155 156 1.527370 GACTGTGGTATCCCAGCCC 59.473 63.158 0.00 0.00 42.94 5.19
156 157 1.527370 GGACTGTGGTATCCCAGCC 59.473 63.158 0.00 0.00 42.94 4.85
161 162 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
162 163 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
163 164 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
164 165 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
165 166 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
166 167 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
167 168 2.093447 GTGGATGGTTAGAGGGACTGTG 60.093 54.545 0.00 0.00 41.55 3.66
168 169 2.188817 GTGGATGGTTAGAGGGACTGT 58.811 52.381 0.00 0.00 41.55 3.55
169 170 2.432510 GAGTGGATGGTTAGAGGGACTG 59.567 54.545 0.00 0.00 41.55 3.51
171 172 2.168728 GTGAGTGGATGGTTAGAGGGAC 59.831 54.545 0.00 0.00 0.00 4.46
172 173 2.467880 GTGAGTGGATGGTTAGAGGGA 58.532 52.381 0.00 0.00 0.00 4.20
173 174 1.137086 CGTGAGTGGATGGTTAGAGGG 59.863 57.143 0.00 0.00 0.00 4.30
174 175 1.137086 CCGTGAGTGGATGGTTAGAGG 59.863 57.143 0.00 0.00 0.00 3.69
175 176 1.137086 CCCGTGAGTGGATGGTTAGAG 59.863 57.143 0.00 0.00 0.00 2.43
176 177 1.191535 CCCGTGAGTGGATGGTTAGA 58.808 55.000 0.00 0.00 0.00 2.10
177 178 0.902531 ACCCGTGAGTGGATGGTTAG 59.097 55.000 0.00 0.00 0.00 2.34
178 179 1.002659 CAACCCGTGAGTGGATGGTTA 59.997 52.381 0.00 0.00 37.20 2.85
179 180 0.250727 CAACCCGTGAGTGGATGGTT 60.251 55.000 0.00 0.00 39.82 3.67
180 181 1.374947 CAACCCGTGAGTGGATGGT 59.625 57.895 0.00 0.00 0.00 3.55
181 182 2.040544 GCAACCCGTGAGTGGATGG 61.041 63.158 0.00 0.00 0.00 3.51
182 183 0.606401 AAGCAACCCGTGAGTGGATG 60.606 55.000 0.00 0.00 0.00 3.51
183 184 0.321653 GAAGCAACCCGTGAGTGGAT 60.322 55.000 0.00 0.00 0.00 3.41
184 185 1.070786 GAAGCAACCCGTGAGTGGA 59.929 57.895 0.00 0.00 0.00 4.02
185 186 2.317609 CGAAGCAACCCGTGAGTGG 61.318 63.158 0.00 0.00 0.00 4.00
186 187 3.244105 CGAAGCAACCCGTGAGTG 58.756 61.111 0.00 0.00 0.00 3.51
199 200 2.215907 ATCTCCGTCTCAATGCGAAG 57.784 50.000 0.00 0.00 0.00 3.79
200 201 2.672874 CAAATCTCCGTCTCAATGCGAA 59.327 45.455 0.00 0.00 0.00 4.70
201 202 2.270923 CAAATCTCCGTCTCAATGCGA 58.729 47.619 0.00 0.00 0.00 5.10
202 203 1.267732 GCAAATCTCCGTCTCAATGCG 60.268 52.381 0.00 0.00 0.00 4.73
203 204 2.012673 AGCAAATCTCCGTCTCAATGC 58.987 47.619 0.00 0.00 0.00 3.56
204 205 4.033358 GTGTAGCAAATCTCCGTCTCAATG 59.967 45.833 0.00 0.00 0.00 2.82
205 206 4.184629 GTGTAGCAAATCTCCGTCTCAAT 58.815 43.478 0.00 0.00 0.00 2.57
206 207 3.585862 GTGTAGCAAATCTCCGTCTCAA 58.414 45.455 0.00 0.00 0.00 3.02
207 208 2.094182 GGTGTAGCAAATCTCCGTCTCA 60.094 50.000 0.00 0.00 0.00 3.27
208 209 2.166664 AGGTGTAGCAAATCTCCGTCTC 59.833 50.000 0.00 0.00 0.00 3.36
209 210 2.180276 AGGTGTAGCAAATCTCCGTCT 58.820 47.619 0.00 0.00 0.00 4.18
210 211 2.674796 AGGTGTAGCAAATCTCCGTC 57.325 50.000 0.00 0.00 0.00 4.79
211 212 2.159282 CGTAGGTGTAGCAAATCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
212 213 2.098607 TCGTAGGTGTAGCAAATCTCCG 59.901 50.000 0.00 0.00 0.00 4.63
213 214 3.795623 TCGTAGGTGTAGCAAATCTCC 57.204 47.619 0.00 0.00 0.00 3.71
214 215 4.491676 TGTTCGTAGGTGTAGCAAATCTC 58.508 43.478 0.00 0.00 0.00 2.75
215 216 4.530710 TGTTCGTAGGTGTAGCAAATCT 57.469 40.909 0.00 0.00 0.00 2.40
216 217 5.600908 TTTGTTCGTAGGTGTAGCAAATC 57.399 39.130 0.00 0.00 0.00 2.17
217 218 5.703592 TGATTTGTTCGTAGGTGTAGCAAAT 59.296 36.000 0.00 0.00 37.65 2.32
218 219 5.057819 TGATTTGTTCGTAGGTGTAGCAAA 58.942 37.500 0.00 0.00 0.00 3.68
219 220 4.633175 TGATTTGTTCGTAGGTGTAGCAA 58.367 39.130 0.00 0.00 0.00 3.91
220 221 4.260139 TGATTTGTTCGTAGGTGTAGCA 57.740 40.909 0.00 0.00 0.00 3.49
221 222 5.808540 TGTATGATTTGTTCGTAGGTGTAGC 59.191 40.000 0.00 0.00 0.00 3.58
222 223 6.475727 CCTGTATGATTTGTTCGTAGGTGTAG 59.524 42.308 0.00 0.00 0.00 2.74
223 224 6.153170 TCCTGTATGATTTGTTCGTAGGTGTA 59.847 38.462 0.00 0.00 0.00 2.90
224 225 5.046878 TCCTGTATGATTTGTTCGTAGGTGT 60.047 40.000 0.00 0.00 0.00 4.16
225 226 5.416083 TCCTGTATGATTTGTTCGTAGGTG 58.584 41.667 0.00 0.00 0.00 4.00
226 227 5.670792 TCCTGTATGATTTGTTCGTAGGT 57.329 39.130 0.00 0.00 0.00 3.08
227 228 6.280643 TGATCCTGTATGATTTGTTCGTAGG 58.719 40.000 0.00 0.00 0.00 3.18
228 229 7.095481 CCATGATCCTGTATGATTTGTTCGTAG 60.095 40.741 0.00 0.00 0.00 3.51
229 230 6.705825 CCATGATCCTGTATGATTTGTTCGTA 59.294 38.462 0.00 0.00 0.00 3.43
230 231 5.528690 CCATGATCCTGTATGATTTGTTCGT 59.471 40.000 0.00 0.00 0.00 3.85
231 232 5.528690 ACCATGATCCTGTATGATTTGTTCG 59.471 40.000 0.00 0.00 0.00 3.95
232 233 6.949352 ACCATGATCCTGTATGATTTGTTC 57.051 37.500 0.00 0.00 0.00 3.18
233 234 8.853126 CATAACCATGATCCTGTATGATTTGTT 58.147 33.333 0.00 0.00 33.67 2.83
234 235 7.449395 CCATAACCATGATCCTGTATGATTTGT 59.551 37.037 0.00 0.00 33.67 2.83
235 236 7.666804 TCCATAACCATGATCCTGTATGATTTG 59.333 37.037 0.00 0.00 33.67 2.32
236 237 7.758609 TCCATAACCATGATCCTGTATGATTT 58.241 34.615 0.00 0.00 33.67 2.17
237 238 7.333779 TCCATAACCATGATCCTGTATGATT 57.666 36.000 0.00 0.00 33.67 2.57
238 239 6.957853 TCCATAACCATGATCCTGTATGAT 57.042 37.500 0.00 0.00 33.67 2.45
239 240 6.762077 TTCCATAACCATGATCCTGTATGA 57.238 37.500 0.00 0.00 33.67 2.15
240 241 7.170277 TCATTCCATAACCATGATCCTGTATG 58.830 38.462 0.00 0.69 33.67 2.39
241 242 7.238305 TCTCATTCCATAACCATGATCCTGTAT 59.762 37.037 0.00 0.00 33.67 2.29
242 243 6.558394 TCTCATTCCATAACCATGATCCTGTA 59.442 38.462 0.00 0.00 33.67 2.74
243 244 5.370584 TCTCATTCCATAACCATGATCCTGT 59.629 40.000 0.00 0.00 33.67 4.00
244 245 5.872963 TCTCATTCCATAACCATGATCCTG 58.127 41.667 0.00 0.00 33.67 3.86
245 246 6.482524 CATCTCATTCCATAACCATGATCCT 58.517 40.000 0.00 0.00 33.67 3.24
246 247 5.651139 CCATCTCATTCCATAACCATGATCC 59.349 44.000 0.00 0.00 33.67 3.36
247 248 5.125097 GCCATCTCATTCCATAACCATGATC 59.875 44.000 0.00 0.00 33.67 2.92
248 249 5.014858 GCCATCTCATTCCATAACCATGAT 58.985 41.667 0.00 0.00 33.67 2.45
249 250 4.141205 TGCCATCTCATTCCATAACCATGA 60.141 41.667 0.00 0.00 33.67 3.07
250 251 4.146564 TGCCATCTCATTCCATAACCATG 58.853 43.478 0.00 0.00 0.00 3.66
251 252 4.458256 TGCCATCTCATTCCATAACCAT 57.542 40.909 0.00 0.00 0.00 3.55
252 253 3.949586 TGCCATCTCATTCCATAACCA 57.050 42.857 0.00 0.00 0.00 3.67
253 254 3.953612 TGTTGCCATCTCATTCCATAACC 59.046 43.478 0.00 0.00 0.00 2.85
254 255 4.641989 AGTGTTGCCATCTCATTCCATAAC 59.358 41.667 0.00 0.00 0.00 1.89
255 256 4.858850 AGTGTTGCCATCTCATTCCATAA 58.141 39.130 0.00 0.00 0.00 1.90
256 257 4.508551 AGTGTTGCCATCTCATTCCATA 57.491 40.909 0.00 0.00 0.00 2.74
257 258 3.377253 AGTGTTGCCATCTCATTCCAT 57.623 42.857 0.00 0.00 0.00 3.41
258 259 2.821378 CAAGTGTTGCCATCTCATTCCA 59.179 45.455 0.00 0.00 0.00 3.53
259 260 2.165030 CCAAGTGTTGCCATCTCATTCC 59.835 50.000 0.00 0.00 0.00 3.01
260 261 2.165030 CCCAAGTGTTGCCATCTCATTC 59.835 50.000 0.00 0.00 0.00 2.67
261 262 2.173519 CCCAAGTGTTGCCATCTCATT 58.826 47.619 0.00 0.00 0.00 2.57
262 263 1.617804 CCCCAAGTGTTGCCATCTCAT 60.618 52.381 0.00 0.00 0.00 2.90
263 264 0.251297 CCCCAAGTGTTGCCATCTCA 60.251 55.000 0.00 0.00 0.00 3.27
264 265 0.038166 TCCCCAAGTGTTGCCATCTC 59.962 55.000 0.00 0.00 0.00 2.75
265 266 0.038744 CTCCCCAAGTGTTGCCATCT 59.961 55.000 0.00 0.00 0.00 2.90
266 267 0.251341 ACTCCCCAAGTGTTGCCATC 60.251 55.000 0.00 0.00 36.65 3.51
267 268 1.072266 TACTCCCCAAGTGTTGCCAT 58.928 50.000 0.00 0.00 39.11 4.40
268 269 0.847373 TTACTCCCCAAGTGTTGCCA 59.153 50.000 0.00 0.00 39.11 4.92
269 270 1.202891 ACTTACTCCCCAAGTGTTGCC 60.203 52.381 0.00 0.00 39.11 4.52
270 271 1.880027 CACTTACTCCCCAAGTGTTGC 59.120 52.381 6.99 0.00 45.06 4.17
275 276 1.498176 GGCCCACTTACTCCCCAAGT 61.498 60.000 0.00 0.00 42.33 3.16
276 277 1.303282 GGCCCACTTACTCCCCAAG 59.697 63.158 0.00 0.00 0.00 3.61
277 278 2.235761 GGGCCCACTTACTCCCCAA 61.236 63.158 19.95 0.00 35.75 4.12
278 279 2.612746 GGGCCCACTTACTCCCCA 60.613 66.667 19.95 0.00 35.75 4.96
279 280 1.996070 GATGGGCCCACTTACTCCCC 61.996 65.000 31.51 3.90 37.97 4.81
280 281 1.532238 GATGGGCCCACTTACTCCC 59.468 63.158 31.51 5.05 39.22 4.30
281 282 1.279025 TGGATGGGCCCACTTACTCC 61.279 60.000 31.51 29.40 34.97 3.85
282 283 0.846693 ATGGATGGGCCCACTTACTC 59.153 55.000 31.51 20.92 39.34 2.59
283 284 0.552848 CATGGATGGGCCCACTTACT 59.447 55.000 31.51 11.67 39.34 2.24
284 285 0.550914 TCATGGATGGGCCCACTTAC 59.449 55.000 31.51 14.92 39.34 2.34
285 286 0.846015 CTCATGGATGGGCCCACTTA 59.154 55.000 31.51 16.97 39.34 2.24
286 287 0.920763 TCTCATGGATGGGCCCACTT 60.921 55.000 31.51 13.67 39.34 3.16
287 288 0.700269 ATCTCATGGATGGGCCCACT 60.700 55.000 31.51 17.17 39.34 4.00
288 289 0.186873 AATCTCATGGATGGGCCCAC 59.813 55.000 31.51 21.00 39.34 4.61
289 290 0.479815 GAATCTCATGGATGGGCCCA 59.520 55.000 30.92 30.92 41.05 5.36
290 291 0.479815 TGAATCTCATGGATGGGCCC 59.520 55.000 17.59 17.59 34.45 5.80
291 292 2.236766 CTTGAATCTCATGGATGGGCC 58.763 52.381 0.00 0.00 34.45 5.80
292 293 2.236766 CCTTGAATCTCATGGATGGGC 58.763 52.381 3.10 0.00 42.46 5.36
293 294 2.490351 CCCCTTGAATCTCATGGATGGG 60.490 54.545 9.53 2.18 42.46 4.00
294 295 2.872732 CCCCTTGAATCTCATGGATGG 58.127 52.381 9.53 1.26 42.46 3.51
295 296 2.236766 GCCCCTTGAATCTCATGGATG 58.763 52.381 9.53 3.12 42.46 3.51
296 297 1.202855 CGCCCCTTGAATCTCATGGAT 60.203 52.381 9.53 0.00 42.46 3.41
297 298 0.181114 CGCCCCTTGAATCTCATGGA 59.819 55.000 9.53 0.00 42.46 3.41
298 299 0.820891 CCGCCCCTTGAATCTCATGG 60.821 60.000 0.00 2.36 40.32 3.66
299 300 0.181114 TCCGCCCCTTGAATCTCATG 59.819 55.000 0.00 0.00 0.00 3.07
300 301 1.143813 ATCCGCCCCTTGAATCTCAT 58.856 50.000 0.00 0.00 0.00 2.90
301 302 0.918983 AATCCGCCCCTTGAATCTCA 59.081 50.000 0.00 0.00 0.00 3.27
302 303 2.104963 ACTAATCCGCCCCTTGAATCTC 59.895 50.000 0.00 0.00 0.00 2.75
303 304 2.127708 ACTAATCCGCCCCTTGAATCT 58.872 47.619 0.00 0.00 0.00 2.40
304 305 2.222027 CACTAATCCGCCCCTTGAATC 58.778 52.381 0.00 0.00 0.00 2.52
305 306 1.133792 CCACTAATCCGCCCCTTGAAT 60.134 52.381 0.00 0.00 0.00 2.57
306 307 0.254747 CCACTAATCCGCCCCTTGAA 59.745 55.000 0.00 0.00 0.00 2.69
307 308 1.632018 CCCACTAATCCGCCCCTTGA 61.632 60.000 0.00 0.00 0.00 3.02
308 309 1.152963 CCCACTAATCCGCCCCTTG 60.153 63.158 0.00 0.00 0.00 3.61
309 310 1.307517 TCCCACTAATCCGCCCCTT 60.308 57.895 0.00 0.00 0.00 3.95
310 311 1.766461 CTCCCACTAATCCGCCCCT 60.766 63.158 0.00 0.00 0.00 4.79
311 312 1.632965 AACTCCCACTAATCCGCCCC 61.633 60.000 0.00 0.00 0.00 5.80
312 313 0.179054 GAACTCCCACTAATCCGCCC 60.179 60.000 0.00 0.00 0.00 6.13
313 314 0.529992 CGAACTCCCACTAATCCGCC 60.530 60.000 0.00 0.00 0.00 6.13
314 315 0.529992 CCGAACTCCCACTAATCCGC 60.530 60.000 0.00 0.00 0.00 5.54
315 316 0.529992 GCCGAACTCCCACTAATCCG 60.530 60.000 0.00 0.00 0.00 4.18
316 317 0.179054 GGCCGAACTCCCACTAATCC 60.179 60.000 0.00 0.00 0.00 3.01
317 318 0.529992 CGGCCGAACTCCCACTAATC 60.530 60.000 24.07 0.00 0.00 1.75
318 319 1.520666 CGGCCGAACTCCCACTAAT 59.479 57.895 24.07 0.00 0.00 1.73
319 320 2.652095 CCGGCCGAACTCCCACTAA 61.652 63.158 30.73 0.00 0.00 2.24
320 321 3.072468 CCGGCCGAACTCCCACTA 61.072 66.667 30.73 0.00 0.00 2.74
338 339 3.288484 GGCTTTGTTAGGCCCAGC 58.712 61.111 0.00 0.00 43.40 4.85
344 345 2.500229 TCTGTTTCGGGCTTTGTTAGG 58.500 47.619 0.00 0.00 0.00 2.69
345 346 5.391629 GGTTATCTGTTTCGGGCTTTGTTAG 60.392 44.000 0.00 0.00 0.00 2.34
346 347 4.456566 GGTTATCTGTTTCGGGCTTTGTTA 59.543 41.667 0.00 0.00 0.00 2.41
347 348 3.254903 GGTTATCTGTTTCGGGCTTTGTT 59.745 43.478 0.00 0.00 0.00 2.83
348 349 2.817844 GGTTATCTGTTTCGGGCTTTGT 59.182 45.455 0.00 0.00 0.00 2.83
349 350 3.081804 AGGTTATCTGTTTCGGGCTTTG 58.918 45.455 0.00 0.00 0.00 2.77
350 351 3.434940 AGGTTATCTGTTTCGGGCTTT 57.565 42.857 0.00 0.00 0.00 3.51
351 352 3.118371 CCTAGGTTATCTGTTTCGGGCTT 60.118 47.826 0.00 0.00 0.00 4.35
352 353 2.434702 CCTAGGTTATCTGTTTCGGGCT 59.565 50.000 0.00 0.00 0.00 5.19
353 354 2.835027 CCTAGGTTATCTGTTTCGGGC 58.165 52.381 0.00 0.00 0.00 6.13
354 355 2.484947 GGCCTAGGTTATCTGTTTCGGG 60.485 54.545 11.31 0.00 0.00 5.14
355 356 2.434702 AGGCCTAGGTTATCTGTTTCGG 59.565 50.000 1.29 0.00 0.00 4.30
356 357 3.458189 CAGGCCTAGGTTATCTGTTTCG 58.542 50.000 3.98 0.00 0.00 3.46
357 358 3.433740 CCCAGGCCTAGGTTATCTGTTTC 60.434 52.174 9.43 0.00 0.00 2.78
358 359 2.509964 CCCAGGCCTAGGTTATCTGTTT 59.490 50.000 9.43 0.00 0.00 2.83
359 360 2.127708 CCCAGGCCTAGGTTATCTGTT 58.872 52.381 9.43 0.00 0.00 3.16
360 361 1.807814 CCCAGGCCTAGGTTATCTGT 58.192 55.000 9.43 0.00 0.00 3.41
361 362 0.398318 GCCCAGGCCTAGGTTATCTG 59.602 60.000 19.24 12.48 34.56 2.90
362 363 0.030092 TGCCCAGGCCTAGGTTATCT 60.030 55.000 19.24 0.51 41.09 1.98
363 364 0.108774 GTGCCCAGGCCTAGGTTATC 59.891 60.000 19.24 2.26 41.09 1.75
364 365 1.696097 CGTGCCCAGGCCTAGGTTAT 61.696 60.000 19.24 0.00 41.09 1.89
365 366 2.363975 CGTGCCCAGGCCTAGGTTA 61.364 63.158 19.24 5.66 41.09 2.85
366 367 3.717294 CGTGCCCAGGCCTAGGTT 61.717 66.667 19.24 0.00 41.09 3.50
390 391 1.676014 CCTGAAAACTAGGCCTGACGG 60.676 57.143 17.99 5.39 0.00 4.79
391 392 1.726853 CCTGAAAACTAGGCCTGACG 58.273 55.000 17.99 6.23 0.00 4.35
398 399 1.205893 AGCTCGAGCCTGAAAACTAGG 59.794 52.381 32.94 0.00 43.38 3.02
399 400 2.535331 GAGCTCGAGCCTGAAAACTAG 58.465 52.381 32.94 0.00 43.38 2.57
400 401 1.135373 CGAGCTCGAGCCTGAAAACTA 60.135 52.381 32.94 0.00 43.38 2.24
401 402 0.389166 CGAGCTCGAGCCTGAAAACT 60.389 55.000 32.94 12.74 43.38 2.66
402 403 1.355066 CCGAGCTCGAGCCTGAAAAC 61.355 60.000 36.59 14.38 43.38 2.43
403 404 1.079819 CCGAGCTCGAGCCTGAAAA 60.080 57.895 36.59 0.00 43.38 2.29
404 405 2.573869 CCGAGCTCGAGCCTGAAA 59.426 61.111 36.59 0.00 43.38 2.69
405 406 4.135153 GCCGAGCTCGAGCCTGAA 62.135 66.667 36.59 0.00 43.38 3.02
410 411 4.992294 GATCGGCCGAGCTCGAGC 62.992 72.222 36.59 32.59 43.02 5.03
411 412 3.534970 CTGATCGGCCGAGCTCGAG 62.535 68.421 39.52 26.84 43.02 4.04
412 413 3.586961 CTGATCGGCCGAGCTCGA 61.587 66.667 39.52 22.04 43.02 4.04
413 414 3.815569 GACTGATCGGCCGAGCTCG 62.816 68.421 39.52 31.35 39.44 5.03
414 415 2.026879 GACTGATCGGCCGAGCTC 59.973 66.667 39.52 29.57 0.00 4.09
415 416 1.888436 TTTGACTGATCGGCCGAGCT 61.888 55.000 39.52 24.31 0.00 4.09
416 417 1.019278 TTTTGACTGATCGGCCGAGC 61.019 55.000 35.35 35.35 0.00 5.03
417 418 1.394917 CTTTTTGACTGATCGGCCGAG 59.605 52.381 33.87 22.13 0.00 4.63
418 419 1.438651 CTTTTTGACTGATCGGCCGA 58.561 50.000 33.12 33.12 0.00 5.54
419 420 0.179189 GCTTTTTGACTGATCGGCCG 60.179 55.000 22.12 22.12 0.00 6.13
420 421 0.171231 GGCTTTTTGACTGATCGGCC 59.829 55.000 0.00 0.00 0.00 6.13
421 422 0.171231 GGGCTTTTTGACTGATCGGC 59.829 55.000 0.00 0.00 0.00 5.54
422 423 1.533625 TGGGCTTTTTGACTGATCGG 58.466 50.000 0.00 0.00 0.00 4.18
423 424 2.223112 CGATGGGCTTTTTGACTGATCG 60.223 50.000 0.00 0.00 32.64 3.69
424 425 2.098117 CCGATGGGCTTTTTGACTGATC 59.902 50.000 0.00 0.00 0.00 2.92
425 426 2.094675 CCGATGGGCTTTTTGACTGAT 58.905 47.619 0.00 0.00 0.00 2.90
426 427 1.533625 CCGATGGGCTTTTTGACTGA 58.466 50.000 0.00 0.00 0.00 3.41
427 428 0.527565 CCCGATGGGCTTTTTGACTG 59.472 55.000 0.00 0.00 35.35 3.51
428 429 2.961424 CCCGATGGGCTTTTTGACT 58.039 52.632 0.00 0.00 35.35 3.41
439 440 0.254747 TTGGAAACTAGGCCCGATGG 59.745 55.000 0.00 0.00 0.00 3.51
440 441 1.209504 TCTTGGAAACTAGGCCCGATG 59.790 52.381 0.00 0.00 33.71 3.84
441 442 1.209747 GTCTTGGAAACTAGGCCCGAT 59.790 52.381 0.00 0.00 31.23 4.18
442 443 0.611714 GTCTTGGAAACTAGGCCCGA 59.388 55.000 0.00 0.00 31.23 5.14
443 444 3.154589 GTCTTGGAAACTAGGCCCG 57.845 57.895 0.00 0.00 31.23 6.13
446 447 1.813178 GCTTGGTCTTGGAAACTAGGC 59.187 52.381 0.00 0.00 37.06 3.93
447 448 2.437413 GGCTTGGTCTTGGAAACTAGG 58.563 52.381 0.00 0.00 33.71 3.02
448 449 2.224769 TGGGCTTGGTCTTGGAAACTAG 60.225 50.000 0.00 0.00 34.24 2.57
449 450 1.777878 TGGGCTTGGTCTTGGAAACTA 59.222 47.619 0.00 0.00 0.00 2.24
450 451 0.555769 TGGGCTTGGTCTTGGAAACT 59.444 50.000 0.00 0.00 0.00 2.66
451 452 1.068588 GTTGGGCTTGGTCTTGGAAAC 59.931 52.381 0.00 0.00 0.00 2.78
452 453 1.408969 GTTGGGCTTGGTCTTGGAAA 58.591 50.000 0.00 0.00 0.00 3.13
453 454 0.469144 GGTTGGGCTTGGTCTTGGAA 60.469 55.000 0.00 0.00 0.00 3.53
454 455 1.152830 GGTTGGGCTTGGTCTTGGA 59.847 57.895 0.00 0.00 0.00 3.53
455 456 1.908299 GGGTTGGGCTTGGTCTTGG 60.908 63.158 0.00 0.00 0.00 3.61
456 457 2.268076 CGGGTTGGGCTTGGTCTTG 61.268 63.158 0.00 0.00 0.00 3.02
457 458 2.115266 CGGGTTGGGCTTGGTCTT 59.885 61.111 0.00 0.00 0.00 3.01
458 459 3.175710 ACGGGTTGGGCTTGGTCT 61.176 61.111 0.00 0.00 0.00 3.85
459 460 2.671963 GACGGGTTGGGCTTGGTC 60.672 66.667 0.00 0.00 0.00 4.02
460 461 3.491598 CTGACGGGTTGGGCTTGGT 62.492 63.158 0.00 0.00 0.00 3.67
461 462 2.672996 CTGACGGGTTGGGCTTGG 60.673 66.667 0.00 0.00 0.00 3.61
462 463 1.966451 GACTGACGGGTTGGGCTTG 60.966 63.158 0.00 0.00 0.00 4.01
463 464 1.990160 TTGACTGACGGGTTGGGCTT 61.990 55.000 0.00 0.00 0.00 4.35
464 465 1.990160 TTTGACTGACGGGTTGGGCT 61.990 55.000 0.00 0.00 0.00 5.19
465 466 1.104577 TTTTGACTGACGGGTTGGGC 61.105 55.000 0.00 0.00 0.00 5.36
466 467 1.394618 TTTTTGACTGACGGGTTGGG 58.605 50.000 0.00 0.00 0.00 4.12
482 483 2.368548 GTTCAAGGCCTGATGGGTTTTT 59.631 45.455 5.69 0.00 37.43 1.94
483 484 1.970640 GTTCAAGGCCTGATGGGTTTT 59.029 47.619 5.69 0.00 37.43 2.43
484 485 1.632589 GTTCAAGGCCTGATGGGTTT 58.367 50.000 5.69 0.00 37.43 3.27
485 486 0.251787 GGTTCAAGGCCTGATGGGTT 60.252 55.000 5.69 0.00 37.43 4.11
486 487 1.384191 GGTTCAAGGCCTGATGGGT 59.616 57.895 5.69 0.00 37.43 4.51
487 488 1.750399 CGGTTCAAGGCCTGATGGG 60.750 63.158 5.69 0.00 32.78 4.00
488 489 1.750399 CCGGTTCAAGGCCTGATGG 60.750 63.158 5.69 5.27 32.78 3.51
489 490 1.750399 CCCGGTTCAAGGCCTGATG 60.750 63.158 5.69 0.68 32.78 3.07
490 491 2.677228 CCCGGTTCAAGGCCTGAT 59.323 61.111 5.69 0.00 32.78 2.90
491 492 4.344865 GCCCGGTTCAAGGCCTGA 62.345 66.667 5.69 2.88 43.76 3.86
496 497 1.377333 GAAGAGGCCCGGTTCAAGG 60.377 63.158 0.00 0.00 0.00 3.61
497 498 1.377333 GGAAGAGGCCCGGTTCAAG 60.377 63.158 0.00 0.00 0.00 3.02
498 499 1.423794 AAGGAAGAGGCCCGGTTCAA 61.424 55.000 0.00 0.00 0.00 2.69
499 500 0.545787 TAAGGAAGAGGCCCGGTTCA 60.546 55.000 0.00 0.00 0.00 3.18
500 501 0.616891 TTAAGGAAGAGGCCCGGTTC 59.383 55.000 0.00 0.00 0.00 3.62
501 502 1.069775 TTTAAGGAAGAGGCCCGGTT 58.930 50.000 0.00 0.00 0.00 4.44
502 503 1.296002 ATTTAAGGAAGAGGCCCGGT 58.704 50.000 0.00 0.00 0.00 5.28
503 504 2.437085 AATTTAAGGAAGAGGCCCGG 57.563 50.000 0.00 0.00 0.00 5.73
504 505 3.881220 TGTAATTTAAGGAAGAGGCCCG 58.119 45.455 0.00 0.00 0.00 6.13
505 506 6.791867 ATTTGTAATTTAAGGAAGAGGCCC 57.208 37.500 0.00 0.00 0.00 5.80
506 507 9.131791 TCATATTTGTAATTTAAGGAAGAGGCC 57.868 33.333 0.00 0.00 0.00 5.19
507 508 9.952188 GTCATATTTGTAATTTAAGGAAGAGGC 57.048 33.333 0.00 0.00 0.00 4.70
511 512 9.651718 GCTCGTCATATTTGTAATTTAAGGAAG 57.348 33.333 0.00 0.00 0.00 3.46
512 513 8.617809 GGCTCGTCATATTTGTAATTTAAGGAA 58.382 33.333 0.00 0.00 0.00 3.36
513 514 7.227910 GGGCTCGTCATATTTGTAATTTAAGGA 59.772 37.037 0.00 0.00 0.00 3.36
514 515 7.012894 TGGGCTCGTCATATTTGTAATTTAAGG 59.987 37.037 0.00 0.00 0.00 2.69
515 516 7.925993 TGGGCTCGTCATATTTGTAATTTAAG 58.074 34.615 0.00 0.00 0.00 1.85
516 517 7.867305 TGGGCTCGTCATATTTGTAATTTAA 57.133 32.000 0.00 0.00 0.00 1.52
517 518 7.867305 TTGGGCTCGTCATATTTGTAATTTA 57.133 32.000 0.00 0.00 0.00 1.40
518 519 6.767524 TTGGGCTCGTCATATTTGTAATTT 57.232 33.333 0.00 0.00 0.00 1.82
519 520 6.016276 GGATTGGGCTCGTCATATTTGTAATT 60.016 38.462 0.00 0.00 0.00 1.40
520 521 5.473504 GGATTGGGCTCGTCATATTTGTAAT 59.526 40.000 0.00 0.00 0.00 1.89
521 522 4.819630 GGATTGGGCTCGTCATATTTGTAA 59.180 41.667 0.00 0.00 0.00 2.41
522 523 4.102524 AGGATTGGGCTCGTCATATTTGTA 59.897 41.667 0.00 0.00 0.00 2.41
523 524 3.117888 AGGATTGGGCTCGTCATATTTGT 60.118 43.478 0.00 0.00 0.00 2.83
524 525 3.251729 CAGGATTGGGCTCGTCATATTTG 59.748 47.826 0.00 0.00 0.00 2.32
525 526 3.480470 CAGGATTGGGCTCGTCATATTT 58.520 45.455 0.00 0.00 0.00 1.40
526 527 2.811873 GCAGGATTGGGCTCGTCATATT 60.812 50.000 0.00 0.00 0.00 1.28
527 528 1.271054 GCAGGATTGGGCTCGTCATAT 60.271 52.381 0.00 0.00 0.00 1.78
528 529 0.106708 GCAGGATTGGGCTCGTCATA 59.893 55.000 0.00 0.00 0.00 2.15
529 530 1.153086 GCAGGATTGGGCTCGTCAT 60.153 57.895 0.00 0.00 0.00 3.06
530 531 2.268920 GCAGGATTGGGCTCGTCA 59.731 61.111 0.00 0.00 0.00 4.35
531 532 2.514824 GGCAGGATTGGGCTCGTC 60.515 66.667 0.00 0.00 0.00 4.20
532 533 4.473520 CGGCAGGATTGGGCTCGT 62.474 66.667 0.00 0.00 0.00 4.18
533 534 3.976701 AACGGCAGGATTGGGCTCG 62.977 63.158 0.00 0.00 0.00 5.03
534 535 2.044946 AACGGCAGGATTGGGCTC 60.045 61.111 0.00 0.00 0.00 4.70
535 536 2.361610 CAACGGCAGGATTGGGCT 60.362 61.111 0.00 0.00 0.00 5.19
536 537 4.133796 GCAACGGCAGGATTGGGC 62.134 66.667 0.00 0.00 40.72 5.36
537 538 3.451894 GGCAACGGCAGGATTGGG 61.452 66.667 0.00 0.00 43.71 4.12
538 539 3.451894 GGGCAACGGCAGGATTGG 61.452 66.667 0.00 0.00 43.71 3.16
539 540 3.814268 CGGGCAACGGCAGGATTG 61.814 66.667 0.00 0.00 43.71 2.67
540 541 4.028490 TCGGGCAACGGCAGGATT 62.028 61.111 0.11 0.00 44.45 3.01
547 548 2.203015 CCATAGGTCGGGCAACGG 60.203 66.667 0.11 0.00 44.45 4.44
553 554 1.743394 GTTTTTCAGCCATAGGTCGGG 59.257 52.381 0.00 0.00 0.00 5.14
554 555 2.711542 AGTTTTTCAGCCATAGGTCGG 58.288 47.619 0.00 0.00 0.00 4.79
555 556 3.871594 CCTAGTTTTTCAGCCATAGGTCG 59.128 47.826 0.00 0.00 0.00 4.79
556 557 3.628032 GCCTAGTTTTTCAGCCATAGGTC 59.372 47.826 0.00 0.00 33.74 3.85
557 558 3.621558 GCCTAGTTTTTCAGCCATAGGT 58.378 45.455 0.00 0.00 33.74 3.08
558 559 2.952310 GGCCTAGTTTTTCAGCCATAGG 59.048 50.000 0.00 0.00 43.32 2.57
559 560 2.952310 GGGCCTAGTTTTTCAGCCATAG 59.048 50.000 0.84 0.00 45.72 2.23
560 561 2.310349 TGGGCCTAGTTTTTCAGCCATA 59.690 45.455 4.53 0.00 45.72 2.74
561 562 1.077005 TGGGCCTAGTTTTTCAGCCAT 59.923 47.619 4.53 0.00 45.72 4.40
562 563 0.480690 TGGGCCTAGTTTTTCAGCCA 59.519 50.000 4.53 0.00 45.72 4.75
563 564 1.177401 CTGGGCCTAGTTTTTCAGCC 58.823 55.000 8.21 0.00 43.09 4.85
564 565 1.177401 CCTGGGCCTAGTTTTTCAGC 58.823 55.000 15.86 0.00 0.00 4.26
565 566 1.177401 GCCTGGGCCTAGTTTTTCAG 58.823 55.000 15.86 4.89 34.56 3.02
566 567 3.356814 GCCTGGGCCTAGTTTTTCA 57.643 52.632 15.86 0.00 34.56 2.69
602 603 4.853142 ATCTACAGCCCGGCCCGA 62.853 66.667 3.71 0.00 0.00 5.14
603 604 4.609018 CATCTACAGCCCGGCCCG 62.609 72.222 5.55 0.00 0.00 6.13
604 605 4.256180 CCATCTACAGCCCGGCCC 62.256 72.222 5.55 0.00 0.00 5.80
605 606 4.937431 GCCATCTACAGCCCGGCC 62.937 72.222 5.55 0.00 36.73 6.13
606 607 4.937431 GGCCATCTACAGCCCGGC 62.937 72.222 0.00 0.00 43.76 6.13
611 612 4.142049 GGACTATATCTGGCCATCTACAGC 60.142 50.000 5.51 0.00 34.76 4.40
612 613 4.097135 CGGACTATATCTGGCCATCTACAG 59.903 50.000 5.51 1.81 36.07 2.74
613 614 4.017126 CGGACTATATCTGGCCATCTACA 58.983 47.826 5.51 0.00 0.00 2.74
614 615 4.096682 GTCGGACTATATCTGGCCATCTAC 59.903 50.000 5.51 0.00 31.42 2.59
615 616 4.263771 TGTCGGACTATATCTGGCCATCTA 60.264 45.833 5.51 0.49 37.53 1.98
616 617 3.093057 GTCGGACTATATCTGGCCATCT 58.907 50.000 5.51 0.00 31.42 2.90
617 618 2.826128 TGTCGGACTATATCTGGCCATC 59.174 50.000 5.51 0.00 37.53 3.51
618 619 2.828520 CTGTCGGACTATATCTGGCCAT 59.171 50.000 5.51 0.00 37.53 4.40
619 620 2.239400 CTGTCGGACTATATCTGGCCA 58.761 52.381 4.71 4.71 37.53 5.36
620 621 1.546476 CCTGTCGGACTATATCTGGCC 59.454 57.143 9.88 0.00 37.53 5.36
621 622 1.067495 GCCTGTCGGACTATATCTGGC 60.067 57.143 9.88 3.20 38.96 4.85
622 623 1.546476 GGCCTGTCGGACTATATCTGG 59.454 57.143 9.88 0.00 34.48 3.86
623 624 2.239400 TGGCCTGTCGGACTATATCTG 58.761 52.381 3.32 0.00 39.94 2.90
624 625 2.677542 TGGCCTGTCGGACTATATCT 57.322 50.000 3.32 0.00 39.94 1.98
625 626 3.391049 GTTTGGCCTGTCGGACTATATC 58.609 50.000 3.32 0.00 39.94 1.63
626 627 2.223971 CGTTTGGCCTGTCGGACTATAT 60.224 50.000 3.32 0.00 39.94 0.86
627 628 1.135527 CGTTTGGCCTGTCGGACTATA 59.864 52.381 3.32 0.00 39.94 1.31
628 629 0.108329 CGTTTGGCCTGTCGGACTAT 60.108 55.000 3.32 0.00 39.94 2.12
629 630 1.290955 CGTTTGGCCTGTCGGACTA 59.709 57.895 3.32 0.00 39.94 2.59
630 631 2.030562 CGTTTGGCCTGTCGGACT 59.969 61.111 3.32 0.00 39.94 3.85
759 807 0.957888 GAGTGGAAAGTGCTGGGAGC 60.958 60.000 0.00 0.00 42.82 4.70
1308 1385 1.448540 GAGCACGGTGATCCAGGTG 60.449 63.158 15.18 0.00 0.00 4.00
1536 1619 0.602905 AAGGGCGTGAAAGGAACTCG 60.603 55.000 0.00 0.00 38.49 4.18
1537 1620 1.605753 AAAGGGCGTGAAAGGAACTC 58.394 50.000 0.00 0.00 38.49 3.01
1543 1627 5.983118 AGAAACAAATAAAAGGGCGTGAAAG 59.017 36.000 0.00 0.00 0.00 2.62
1655 1753 3.598019 ACCAGTTAAGTTAATCGGCGA 57.402 42.857 13.87 13.87 0.00 5.54
1712 1815 1.374252 GAGCAGAAACCTCGCCGAA 60.374 57.895 0.00 0.00 0.00 4.30
1978 2140 2.441750 AGCTCTATCGAGAAGGTCTCCT 59.558 50.000 0.00 0.00 40.34 3.69
2069 2231 1.227002 GATGAGGAAGCGGTCGTCC 60.227 63.158 9.66 0.00 39.89 4.79
2140 2302 1.740296 GCATCCGTGTAACCGTGCT 60.740 57.895 0.00 0.00 0.00 4.40
2141 2303 2.746803 GGCATCCGTGTAACCGTGC 61.747 63.158 0.00 0.00 0.00 5.34
2143 2305 2.125832 CGGCATCCGTGTAACCGT 60.126 61.111 0.00 0.00 42.73 4.83
2145 2307 2.319890 ATCCCGGCATCCGTGTAACC 62.320 60.000 0.00 0.00 46.80 2.85
2149 2311 4.856801 GCATCCCGGCATCCGTGT 62.857 66.667 0.00 0.00 46.80 4.49
2174 2400 2.557924 TGTTCTTGACCCATTCATGTGC 59.442 45.455 0.00 0.00 32.84 4.57
2292 2542 0.178903 TAACCACTGCAGGTCCCTCT 60.179 55.000 19.93 0.00 42.25 3.69
2295 2545 1.377333 GCTAACCACTGCAGGTCCC 60.377 63.158 19.93 0.00 42.25 4.46
2296 2546 1.741770 CGCTAACCACTGCAGGTCC 60.742 63.158 19.93 0.00 42.25 4.46
2297 2547 1.741770 CCGCTAACCACTGCAGGTC 60.742 63.158 19.93 0.00 42.25 3.85
2298 2548 2.347490 CCGCTAACCACTGCAGGT 59.653 61.111 19.93 5.02 45.91 4.00
2299 2549 3.127533 GCCGCTAACCACTGCAGG 61.128 66.667 19.93 4.24 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.