Multiple sequence alignment - TraesCS5D01G247200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G247200 chr5D 100.000 2522 0 0 1 2522 354833301 354835822 0.000000e+00 4658.0
1 TraesCS5D01G247200 chr5D 100.000 107 0 0 2173 2279 354835368 354835474 5.500000e-47 198.0
2 TraesCS5D01G247200 chr5D 100.000 107 0 0 2068 2174 354835473 354835579 5.500000e-47 198.0
3 TraesCS5D01G247200 chr5D 83.333 114 10 7 790 897 125803501 125803611 2.070000e-16 97.1
4 TraesCS5D01G247200 chr5B 89.387 1093 75 15 844 1899 419617423 419618511 0.000000e+00 1338.0
5 TraesCS5D01G247200 chr5B 86.328 629 39 8 2 596 419616168 419616783 2.120000e-180 641.0
6 TraesCS5D01G247200 chr5B 90.079 252 12 3 537 775 419617171 419617422 5.240000e-82 315.0
7 TraesCS5D01G247200 chr5B 93.878 49 3 0 488 536 419616785 419616833 9.680000e-10 75.0
8 TraesCS5D01G247200 chr5A 88.043 1104 57 30 881 1942 456972507 456973577 0.000000e+00 1238.0
9 TraesCS5D01G247200 chr5A 93.082 159 11 0 2006 2164 456973583 456973741 1.510000e-57 233.0
10 TraesCS5D01G247200 chr5A 94.262 122 3 3 2175 2292 456973647 456973768 1.540000e-42 183.0
11 TraesCS5D01G247200 chr2A 80.476 210 20 10 35 238 528899291 528899485 9.410000e-30 141.0
12 TraesCS5D01G247200 chr3B 82.963 135 19 3 515 647 813945412 813945280 4.410000e-23 119.0
13 TraesCS5D01G247200 chr6B 81.208 149 19 9 2380 2520 694180080 694180227 7.370000e-21 111.0
14 TraesCS5D01G247200 chr6B 86.517 89 6 6 771 857 652640755 652640839 2.670000e-15 93.5
15 TraesCS5D01G247200 chrUn 96.875 64 2 0 791 854 83375496 83375433 9.540000e-20 108.0
16 TraesCS5D01G247200 chr6A 96.875 64 2 0 791 854 127607920 127607983 9.540000e-20 108.0
17 TraesCS5D01G247200 chr7D 86.598 97 8 5 774 866 135026248 135026343 4.440000e-18 102.0
18 TraesCS5D01G247200 chr1A 88.889 81 7 2 791 870 49276294 49276373 5.740000e-17 99.0
19 TraesCS5D01G247200 chr1A 86.517 89 9 3 767 854 225509489 225509575 7.430000e-16 95.3
20 TraesCS5D01G247200 chr2D 88.095 84 7 3 774 855 642198791 642198709 2.070000e-16 97.1
21 TraesCS5D01G247200 chr2D 87.209 86 8 3 770 853 451974407 451974323 7.430000e-16 95.3
22 TraesCS5D01G247200 chr3A 100.000 28 0 0 766 793 535847097 535847070 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G247200 chr5D 354833301 354835822 2521 False 1684.666667 4658 100.000000 1 2522 3 chr5D.!!$F2 2521
1 TraesCS5D01G247200 chr5B 419616168 419618511 2343 False 592.250000 1338 89.918000 2 1899 4 chr5B.!!$F1 1897
2 TraesCS5D01G247200 chr5A 456972507 456973768 1261 False 551.333333 1238 91.795667 881 2292 3 chr5A.!!$F1 1411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 503 0.032416 TACCAGTCTAGGCTCCCACC 60.032 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 2992 0.033504 ACGGACGTTGATGTCAAGCT 59.966 50.0 5.77 0.0 40.72 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 0.385751 GCAGTGAGGCGCTAGATACA 59.614 55.000 7.64 0.00 0.00 2.29
100 101 3.289911 CGCTAGATACAGACGTTACAGC 58.710 50.000 0.00 0.00 0.00 4.40
107 108 3.769228 AGACGTTACAGCGACTGAC 57.231 52.632 12.77 2.31 35.79 3.51
108 109 0.240411 AGACGTTACAGCGACTGACC 59.760 55.000 12.77 1.24 35.79 4.02
109 110 1.063951 GACGTTACAGCGACTGACCG 61.064 60.000 12.77 12.28 35.18 4.79
217 218 2.912295 TGACATCCAATCCAACCTCTCA 59.088 45.455 0.00 0.00 0.00 3.27
252 253 2.683933 CCCACGCCTCCTACACCT 60.684 66.667 0.00 0.00 0.00 4.00
253 254 2.722201 CCCACGCCTCCTACACCTC 61.722 68.421 0.00 0.00 0.00 3.85
261 262 2.076622 CTCCTACACCTCGCATCCCG 62.077 65.000 0.00 0.00 38.61 5.14
262 263 2.125326 CCTACACCTCGCATCCCGA 61.125 63.158 0.00 0.00 45.15 5.14
287 288 1.132500 ATTACCTAGGCCACTCCTGC 58.868 55.000 9.30 0.00 46.98 4.85
354 355 0.979665 CCTTTCAGGACTGCTGGAGA 59.020 55.000 2.24 0.00 37.67 3.71
357 358 0.539669 TTCAGGACTGCTGGAGACGA 60.540 55.000 2.24 0.00 0.00 4.20
398 411 2.666862 CAACGGCTGGCGTGGTAA 60.667 61.111 29.80 0.00 0.00 2.85
411 446 0.458025 GTGGTAAGCTTCGACGAGGG 60.458 60.000 0.00 2.56 0.00 4.30
413 448 1.141234 GTAAGCTTCGACGAGGGGG 59.859 63.158 0.00 0.00 0.00 5.40
422 457 3.175710 ACGAGGGGGCTGTGGTTT 61.176 61.111 0.00 0.00 0.00 3.27
426 461 4.233558 GGGGGCTGTGGTTTGGGT 62.234 66.667 0.00 0.00 0.00 4.51
427 462 2.600470 GGGGCTGTGGTTTGGGTC 60.600 66.667 0.00 0.00 0.00 4.46
428 463 2.197324 GGGCTGTGGTTTGGGTCA 59.803 61.111 0.00 0.00 0.00 4.02
436 471 3.056328 GTTTGGGTCAGCGGCTCC 61.056 66.667 0.00 0.00 0.00 4.70
463 498 1.069358 GCCATGTACCAGTCTAGGCTC 59.931 57.143 0.00 0.00 37.67 4.70
464 499 1.689273 CCATGTACCAGTCTAGGCTCC 59.311 57.143 0.00 0.00 0.00 4.70
465 500 1.689273 CATGTACCAGTCTAGGCTCCC 59.311 57.143 0.00 0.00 0.00 4.30
466 501 0.708209 TGTACCAGTCTAGGCTCCCA 59.292 55.000 0.00 0.00 0.00 4.37
467 502 1.112950 GTACCAGTCTAGGCTCCCAC 58.887 60.000 0.00 0.00 0.00 4.61
468 503 0.032416 TACCAGTCTAGGCTCCCACC 60.032 60.000 0.00 0.00 0.00 4.61
469 504 1.002274 CCAGTCTAGGCTCCCACCT 59.998 63.158 0.00 0.00 44.31 4.00
470 505 1.045911 CCAGTCTAGGCTCCCACCTC 61.046 65.000 0.00 0.00 41.50 3.85
560 1041 2.154462 CGGAGCAGACCATGAAAAAGT 58.846 47.619 0.00 0.00 0.00 2.66
562 1043 2.160417 GGAGCAGACCATGAAAAAGTCG 59.840 50.000 0.00 0.00 35.65 4.18
586 1067 2.035442 GTGGGAAGAGGCTTCGTGC 61.035 63.158 0.00 0.00 41.94 5.34
595 1076 2.391389 GGCTTCGTGCGGGAAAGAG 61.391 63.158 0.00 0.00 44.05 2.85
596 1077 1.668151 GCTTCGTGCGGGAAAGAGT 60.668 57.895 0.00 0.00 0.00 3.24
613 1094 2.166664 AGAGTCAGTTTCCGATACAGGC 59.833 50.000 0.00 0.00 0.00 4.85
621 1102 1.948104 TCCGATACAGGCGATTTTGG 58.052 50.000 0.00 0.00 0.00 3.28
623 1104 1.474320 CCGATACAGGCGATTTTGGGA 60.474 52.381 0.00 0.00 0.00 4.37
643 1124 7.973048 TGGGAGTAATCAGATTTGTACTAGT 57.027 36.000 0.00 0.00 0.00 2.57
644 1125 8.375493 TGGGAGTAATCAGATTTGTACTAGTT 57.625 34.615 0.00 0.00 0.00 2.24
680 1161 0.373716 GTTAACAGATTGCGGCTCGG 59.626 55.000 0.00 0.00 0.00 4.63
681 1162 1.366111 TTAACAGATTGCGGCTCGGC 61.366 55.000 0.00 0.00 0.00 5.54
775 1269 7.999679 TGTGTTACATGGTAGGTATGTACTAC 58.000 38.462 0.00 0.00 39.86 2.73
776 1270 7.835682 TGTGTTACATGGTAGGTATGTACTACT 59.164 37.037 0.00 0.00 39.86 2.57
777 1271 8.348507 GTGTTACATGGTAGGTATGTACTACTC 58.651 40.741 0.00 0.00 39.86 2.59
778 1272 7.503566 TGTTACATGGTAGGTATGTACTACTCC 59.496 40.741 0.00 1.29 39.86 3.85
779 1273 5.392125 ACATGGTAGGTATGTACTACTCCC 58.608 45.833 0.00 0.00 40.43 4.30
780 1274 5.135705 ACATGGTAGGTATGTACTACTCCCT 59.864 44.000 0.00 0.00 40.43 4.20
781 1275 5.316158 TGGTAGGTATGTACTACTCCCTC 57.684 47.826 0.00 0.00 40.43 4.30
782 1276 4.980342 TGGTAGGTATGTACTACTCCCTCT 59.020 45.833 0.00 0.00 40.43 3.69
783 1277 5.163120 TGGTAGGTATGTACTACTCCCTCTG 60.163 48.000 0.00 0.00 40.43 3.35
784 1278 5.163109 GGTAGGTATGTACTACTCCCTCTGT 60.163 48.000 0.00 0.00 40.43 3.41
785 1279 5.051409 AGGTATGTACTACTCCCTCTGTC 57.949 47.826 0.00 0.00 0.00 3.51
786 1280 4.141205 AGGTATGTACTACTCCCTCTGTCC 60.141 50.000 0.00 0.00 0.00 4.02
787 1281 2.822707 TGTACTACTCCCTCTGTCCC 57.177 55.000 0.00 0.00 0.00 4.46
788 1282 1.997791 TGTACTACTCCCTCTGTCCCA 59.002 52.381 0.00 0.00 0.00 4.37
789 1283 2.380932 TGTACTACTCCCTCTGTCCCAA 59.619 50.000 0.00 0.00 0.00 4.12
790 1284 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
791 1285 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
792 1286 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
793 1287 3.916989 ACTACTCCCTCTGTCCCAAAATT 59.083 43.478 0.00 0.00 0.00 1.82
794 1288 3.903530 ACTCCCTCTGTCCCAAAATTT 57.096 42.857 0.00 0.00 0.00 1.82
795 1289 4.199002 ACTCCCTCTGTCCCAAAATTTT 57.801 40.909 0.00 0.00 0.00 1.82
796 1290 3.897505 ACTCCCTCTGTCCCAAAATTTTG 59.102 43.478 21.65 21.65 37.90 2.44
797 1291 3.897505 CTCCCTCTGTCCCAAAATTTTGT 59.102 43.478 25.25 0.00 36.45 2.83
798 1292 5.068215 TCCCTCTGTCCCAAAATTTTGTA 57.932 39.130 25.25 13.11 36.45 2.41
799 1293 4.830600 TCCCTCTGTCCCAAAATTTTGTAC 59.169 41.667 25.25 21.97 36.45 2.90
800 1294 4.832823 CCCTCTGTCCCAAAATTTTGTACT 59.167 41.667 25.25 0.00 36.45 2.73
801 1295 6.007703 CCCTCTGTCCCAAAATTTTGTACTA 58.992 40.000 25.25 15.08 36.45 1.82
802 1296 6.492087 CCCTCTGTCCCAAAATTTTGTACTAA 59.508 38.462 25.25 14.82 36.45 2.24
803 1297 7.014808 CCCTCTGTCCCAAAATTTTGTACTAAA 59.985 37.037 25.25 4.96 36.45 1.85
804 1298 8.082242 CCTCTGTCCCAAAATTTTGTACTAAAG 58.918 37.037 25.25 18.72 36.45 1.85
805 1299 8.528044 TCTGTCCCAAAATTTTGTACTAAAGT 57.472 30.769 25.25 2.98 36.45 2.66
806 1300 8.973182 TCTGTCCCAAAATTTTGTACTAAAGTT 58.027 29.630 25.25 9.18 36.45 2.66
834 1328 9.673454 GTACAAAGTTAAGACACTTATTTTGGG 57.327 33.333 19.96 8.06 35.87 4.12
835 1329 8.528044 ACAAAGTTAAGACACTTATTTTGGGA 57.472 30.769 19.96 0.00 35.87 4.37
836 1330 8.410912 ACAAAGTTAAGACACTTATTTTGGGAC 58.589 33.333 19.96 6.58 35.87 4.46
837 1331 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
838 1332 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
839 1333 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
840 1334 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
841 1335 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
842 1336 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
951 1445 5.951747 AGGGTTAATTGCATGCTTTTCTCTA 59.048 36.000 20.33 0.00 0.00 2.43
1157 1670 2.713895 ACTGTCGAGTCATCTGTGTG 57.286 50.000 0.00 0.00 0.00 3.82
1248 1761 5.046529 CGAGCAGAGTATGATAAACAGCTT 58.953 41.667 0.00 0.00 0.00 3.74
1267 1780 3.870274 CTTCAATCATCCAGACAGAGCA 58.130 45.455 0.00 0.00 0.00 4.26
1273 1786 5.820404 ATCATCCAGACAGAGCATTGATA 57.180 39.130 0.00 0.00 0.00 2.15
1275 1788 6.183810 TCATCCAGACAGAGCATTGATATT 57.816 37.500 0.00 0.00 0.00 1.28
1282 1795 6.313164 CAGACAGAGCATTGATATTATCGCAT 59.687 38.462 0.00 0.00 0.00 4.73
1284 1797 6.404708 ACAGAGCATTGATATTATCGCATCT 58.595 36.000 0.00 0.91 0.00 2.90
1317 1830 5.661056 TCGAGGATATGACTGTTGAAAGT 57.339 39.130 0.00 0.00 0.00 2.66
1350 1863 0.179084 TGGAGCTATTGTACGCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
1383 1896 6.250819 CGATTATTTTTCGATCACAGCTTGT 58.749 36.000 0.00 0.00 38.88 3.16
1430 1943 4.080299 GGTGAGTGAAGATGGGGAAATAGT 60.080 45.833 0.00 0.00 0.00 2.12
1500 2013 4.451096 GGCTCATGTTCTCTTAAAACACGA 59.549 41.667 0.00 0.00 39.29 4.35
1533 2046 3.806316 AAAGCTTGATTCGTTGTACCG 57.194 42.857 0.00 0.00 0.00 4.02
1538 2051 0.390603 TGATTCGTTGTACCGCTGGG 60.391 55.000 0.00 0.00 40.11 4.45
1552 2069 1.034838 GCTGGGTGTGTGTTGGTCAA 61.035 55.000 0.00 0.00 0.00 3.18
1585 2102 3.895232 TGAACACCTTCTATCCTGCTC 57.105 47.619 0.00 0.00 0.00 4.26
1590 2107 4.837972 ACACCTTCTATCCTGCTCTTTTC 58.162 43.478 0.00 0.00 0.00 2.29
1595 2112 3.525537 TCTATCCTGCTCTTTTCAAGCG 58.474 45.455 0.00 0.00 42.83 4.68
1607 2124 0.530650 TTCAAGCGCCTCCGATCATC 60.531 55.000 2.29 0.00 36.29 2.92
1627 2144 1.201998 CGTCGACATAGCGTGTACTGT 60.202 52.381 17.16 0.00 42.36 3.55
1636 2153 2.985896 AGCGTGTACTGTTGGCATATT 58.014 42.857 0.00 0.00 0.00 1.28
1644 2161 7.189512 GTGTACTGTTGGCATATTCATTCTTC 58.810 38.462 0.00 0.00 0.00 2.87
1647 2164 5.954150 ACTGTTGGCATATTCATTCTTCCTT 59.046 36.000 0.00 0.00 0.00 3.36
1665 2190 2.487265 CCTTGTGTACCTGAGCTGGTTT 60.487 50.000 0.33 0.00 41.22 3.27
1694 2219 7.541162 TGAGATGAATGATGTTTTTGACCATC 58.459 34.615 0.00 0.00 0.00 3.51
1717 2242 2.230660 GCTCAGCTAACCACCTTTGTT 58.769 47.619 0.00 0.00 0.00 2.83
1725 2250 4.982295 GCTAACCACCTTTGTTGATTCAAC 59.018 41.667 20.27 20.27 43.78 3.18
1785 2313 6.588719 AATTTTGCTTGTTGGCTATGACTA 57.411 33.333 0.00 0.00 0.00 2.59
1805 2333 2.303549 GATGCTCCCTCACCTGTCGG 62.304 65.000 0.00 0.00 0.00 4.79
1840 2376 2.675032 CGACAGCTGAGGTGAATGCTTA 60.675 50.000 23.35 0.00 34.87 3.09
1881 2417 7.405292 ACTTGGATGATTTCTCCTGTCAATTA 58.595 34.615 0.00 0.00 33.69 1.40
1899 2435 6.410914 GTCAATTACACTGACGAAACAACAAG 59.589 38.462 0.00 0.00 34.32 3.16
1942 2478 9.593134 TTTGTTGTGTCTTTTGCTGTAAATTAT 57.407 25.926 0.00 0.00 0.00 1.28
2031 2567 4.344237 GCATTACCCTTGCTGCCT 57.656 55.556 0.00 0.00 37.14 4.75
2052 2588 5.221541 GCCTTGTCTGGTCTATACTGCTAAT 60.222 44.000 0.00 0.00 0.00 1.73
2055 2591 7.417911 CCTTGTCTGGTCTATACTGCTAATCAA 60.418 40.741 0.00 0.00 0.00 2.57
2058 2594 6.041069 GTCTGGTCTATACTGCTAATCAAGGT 59.959 42.308 0.00 0.00 0.00 3.50
2060 2596 5.897250 TGGTCTATACTGCTAATCAAGGTCA 59.103 40.000 0.00 0.00 0.00 4.02
2066 2602 2.877168 CTGCTAATCAAGGTCAGCATCC 59.123 50.000 0.00 0.00 42.72 3.51
2068 2604 2.877168 GCTAATCAAGGTCAGCATCCTG 59.123 50.000 0.00 0.00 40.54 3.86
2127 2663 7.110810 AGGGATGATCTATCAGCATATGTTTG 58.889 38.462 10.13 3.96 44.53 2.93
2139 2675 7.822658 TCAGCATATGTTTGTTAGTAAAACCC 58.177 34.615 4.29 0.00 36.82 4.11
2165 2701 1.864176 CGTTAACGGCAAGTCACCC 59.136 57.895 20.24 0.00 35.37 4.61
2170 2706 3.557824 CGGCAAGTCACCCGTAAC 58.442 61.111 0.00 0.00 39.67 2.50
2171 2707 1.301087 CGGCAAGTCACCCGTAACA 60.301 57.895 0.00 0.00 39.67 2.41
2172 2708 0.672401 CGGCAAGTCACCCGTAACAT 60.672 55.000 0.00 0.00 39.67 2.71
2173 2709 0.802494 GGCAAGTCACCCGTAACATG 59.198 55.000 0.00 0.00 0.00 3.21
2174 2710 0.168128 GCAAGTCACCCGTAACATGC 59.832 55.000 0.00 0.00 33.63 4.06
2175 2711 1.518325 CAAGTCACCCGTAACATGCA 58.482 50.000 0.00 0.00 0.00 3.96
2176 2712 1.196808 CAAGTCACCCGTAACATGCAC 59.803 52.381 0.00 0.00 0.00 4.57
2177 2713 0.394938 AGTCACCCGTAACATGCACA 59.605 50.000 0.00 0.00 0.00 4.57
2178 2714 0.796312 GTCACCCGTAACATGCACAG 59.204 55.000 0.00 0.00 0.00 3.66
2179 2715 0.682292 TCACCCGTAACATGCACAGA 59.318 50.000 0.00 0.00 0.00 3.41
2180 2716 1.070914 TCACCCGTAACATGCACAGAA 59.929 47.619 0.00 0.00 0.00 3.02
2181 2717 1.196808 CACCCGTAACATGCACAGAAC 59.803 52.381 0.00 0.00 0.00 3.01
2182 2718 0.442310 CCCGTAACATGCACAGAACG 59.558 55.000 0.00 0.00 0.00 3.95
2183 2719 0.442310 CCGTAACATGCACAGAACGG 59.558 55.000 15.41 15.41 43.20 4.44
2184 2720 1.144969 CGTAACATGCACAGAACGGT 58.855 50.000 0.00 0.00 0.00 4.83
2185 2721 1.126113 CGTAACATGCACAGAACGGTC 59.874 52.381 0.00 0.00 0.00 4.79
2186 2722 2.413837 GTAACATGCACAGAACGGTCT 58.586 47.619 0.00 0.00 32.85 3.85
2187 2723 1.512926 AACATGCACAGAACGGTCTC 58.487 50.000 0.00 0.00 28.78 3.36
2188 2724 0.667487 ACATGCACAGAACGGTCTCG 60.667 55.000 0.00 0.00 43.02 4.04
2202 2738 4.921470 CGGTCTCGTTTTGTATGATGTT 57.079 40.909 0.00 0.00 0.00 2.71
2203 2739 4.637968 CGGTCTCGTTTTGTATGATGTTG 58.362 43.478 0.00 0.00 0.00 3.33
2204 2740 4.403453 GGTCTCGTTTTGTATGATGTTGC 58.597 43.478 0.00 0.00 0.00 4.17
2205 2741 4.403453 GTCTCGTTTTGTATGATGTTGCC 58.597 43.478 0.00 0.00 0.00 4.52
2206 2742 4.068599 TCTCGTTTTGTATGATGTTGCCA 58.931 39.130 0.00 0.00 0.00 4.92
2207 2743 4.517075 TCTCGTTTTGTATGATGTTGCCAA 59.483 37.500 0.00 0.00 0.00 4.52
2208 2744 4.793071 TCGTTTTGTATGATGTTGCCAAG 58.207 39.130 0.00 0.00 0.00 3.61
2209 2745 3.919804 CGTTTTGTATGATGTTGCCAAGG 59.080 43.478 0.00 0.00 0.00 3.61
2210 2746 4.244862 GTTTTGTATGATGTTGCCAAGGG 58.755 43.478 0.00 0.00 0.00 3.95
2211 2747 3.448093 TTGTATGATGTTGCCAAGGGA 57.552 42.857 0.00 0.00 0.00 4.20
2212 2748 3.668141 TGTATGATGTTGCCAAGGGAT 57.332 42.857 0.00 0.00 0.00 3.85
2213 2749 3.289836 TGTATGATGTTGCCAAGGGATG 58.710 45.455 0.00 0.00 0.00 3.51
2214 2750 2.832643 ATGATGTTGCCAAGGGATGA 57.167 45.000 0.00 0.00 0.00 2.92
2215 2751 2.832643 TGATGTTGCCAAGGGATGAT 57.167 45.000 0.00 0.00 0.00 2.45
2216 2752 2.658285 TGATGTTGCCAAGGGATGATC 58.342 47.619 0.00 0.00 0.00 2.92
2217 2753 2.242965 TGATGTTGCCAAGGGATGATCT 59.757 45.455 0.00 0.00 0.00 2.75
2218 2754 3.459227 TGATGTTGCCAAGGGATGATCTA 59.541 43.478 0.00 0.00 0.00 1.98
2219 2755 4.105217 TGATGTTGCCAAGGGATGATCTAT 59.895 41.667 0.00 0.00 0.00 1.98
2220 2756 4.090761 TGTTGCCAAGGGATGATCTATC 57.909 45.455 0.00 0.00 34.93 2.08
2221 2757 3.459227 TGTTGCCAAGGGATGATCTATCA 59.541 43.478 0.00 0.00 41.70 2.15
2222 2758 4.070716 GTTGCCAAGGGATGATCTATCAG 58.929 47.826 0.00 0.00 40.64 2.90
2223 2759 2.039480 TGCCAAGGGATGATCTATCAGC 59.961 50.000 0.00 0.00 42.17 4.26
2224 2760 2.039480 GCCAAGGGATGATCTATCAGCA 59.961 50.000 10.13 0.00 44.53 4.41
2225 2761 3.308259 GCCAAGGGATGATCTATCAGCAT 60.308 47.826 10.13 0.00 44.53 3.79
2226 2762 4.080695 GCCAAGGGATGATCTATCAGCATA 60.081 45.833 10.13 0.00 44.53 3.14
2227 2763 5.397672 GCCAAGGGATGATCTATCAGCATAT 60.398 44.000 10.13 0.00 44.53 1.78
2228 2764 6.056236 CCAAGGGATGATCTATCAGCATATG 58.944 44.000 10.13 0.00 44.53 1.78
2229 2765 6.352823 CCAAGGGATGATCTATCAGCATATGT 60.353 42.308 10.13 0.00 44.53 2.29
2230 2766 6.887886 AGGGATGATCTATCAGCATATGTT 57.112 37.500 10.13 0.00 44.53 2.71
2231 2767 7.268212 AGGGATGATCTATCAGCATATGTTT 57.732 36.000 10.13 0.00 44.53 2.83
2232 2768 7.110810 AGGGATGATCTATCAGCATATGTTTG 58.889 38.462 10.13 3.96 44.53 2.93
2233 2769 6.883217 GGGATGATCTATCAGCATATGTTTGT 59.117 38.462 10.13 0.00 44.53 2.83
2234 2770 7.392673 GGGATGATCTATCAGCATATGTTTGTT 59.607 37.037 10.13 2.08 44.53 2.83
2235 2771 9.440773 GGATGATCTATCAGCATATGTTTGTTA 57.559 33.333 10.13 3.05 44.53 2.41
2244 2780 7.822658 TCAGCATATGTTTGTTAGTAAAACCC 58.177 34.615 4.29 0.00 36.82 4.11
2245 2781 7.448777 TCAGCATATGTTTGTTAGTAAAACCCA 59.551 33.333 4.29 0.00 36.82 4.51
2246 2782 8.085296 CAGCATATGTTTGTTAGTAAAACCCAA 58.915 33.333 4.29 0.00 36.82 4.12
2247 2783 8.811994 AGCATATGTTTGTTAGTAAAACCCAAT 58.188 29.630 4.29 0.00 36.82 3.16
2248 2784 9.083080 GCATATGTTTGTTAGTAAAACCCAATC 57.917 33.333 4.29 0.00 36.82 2.67
2249 2785 9.581099 CATATGTTTGTTAGTAAAACCCAATCC 57.419 33.333 0.00 0.00 36.82 3.01
2250 2786 6.074544 TGTTTGTTAGTAAAACCCAATCCG 57.925 37.500 0.00 0.00 36.82 4.18
2251 2787 4.769859 TTGTTAGTAAAACCCAATCCGC 57.230 40.909 0.00 0.00 0.00 5.54
2252 2788 3.083293 TGTTAGTAAAACCCAATCCGCC 58.917 45.455 0.00 0.00 0.00 6.13
2253 2789 2.027003 TAGTAAAACCCAATCCGCCG 57.973 50.000 0.00 0.00 0.00 6.46
2254 2790 0.037160 AGTAAAACCCAATCCGCCGT 59.963 50.000 0.00 0.00 0.00 5.68
2255 2791 0.883153 GTAAAACCCAATCCGCCGTT 59.117 50.000 0.00 0.00 0.00 4.44
2256 2792 2.083002 GTAAAACCCAATCCGCCGTTA 58.917 47.619 0.00 0.00 0.00 3.18
2257 2793 1.618487 AAAACCCAATCCGCCGTTAA 58.382 45.000 0.00 0.00 0.00 2.01
2258 2794 0.883153 AAACCCAATCCGCCGTTAAC 59.117 50.000 0.00 0.00 0.00 2.01
2259 2795 1.300266 AACCCAATCCGCCGTTAACG 61.300 55.000 20.99 20.99 39.44 3.18
2270 2806 1.864176 CGTTAACGGCAAGTCACCC 59.136 57.895 20.24 0.00 35.37 4.61
2288 2824 2.235155 ACCCGTAACATGACTATGTGCA 59.765 45.455 0.00 0.00 46.54 4.57
2350 2886 6.223852 AGTAAGGATCATATTACAAGCCACG 58.776 40.000 13.80 0.00 34.91 4.94
2351 2887 4.689612 AGGATCATATTACAAGCCACGT 57.310 40.909 0.00 0.00 0.00 4.49
2352 2888 5.801531 AGGATCATATTACAAGCCACGTA 57.198 39.130 0.00 0.00 0.00 3.57
2353 2889 5.539048 AGGATCATATTACAAGCCACGTAC 58.461 41.667 0.00 0.00 0.00 3.67
2354 2890 5.069914 AGGATCATATTACAAGCCACGTACA 59.930 40.000 0.00 0.00 0.00 2.90
2355 2891 5.176958 GGATCATATTACAAGCCACGTACAC 59.823 44.000 0.00 0.00 0.00 2.90
2356 2892 5.074584 TCATATTACAAGCCACGTACACA 57.925 39.130 0.00 0.00 0.00 3.72
2357 2893 4.865925 TCATATTACAAGCCACGTACACAC 59.134 41.667 0.00 0.00 0.00 3.82
2358 2894 2.598686 TTACAAGCCACGTACACACA 57.401 45.000 0.00 0.00 0.00 3.72
2359 2895 2.143008 TACAAGCCACGTACACACAG 57.857 50.000 0.00 0.00 0.00 3.66
2360 2896 0.462375 ACAAGCCACGTACACACAGA 59.538 50.000 0.00 0.00 0.00 3.41
2361 2897 0.859232 CAAGCCACGTACACACAGAC 59.141 55.000 0.00 0.00 0.00 3.51
2362 2898 0.249741 AAGCCACGTACACACAGACC 60.250 55.000 0.00 0.00 0.00 3.85
2363 2899 1.113517 AGCCACGTACACACAGACCT 61.114 55.000 0.00 0.00 0.00 3.85
2364 2900 0.944311 GCCACGTACACACAGACCTG 60.944 60.000 0.00 0.00 0.00 4.00
2365 2901 0.387929 CCACGTACACACAGACCTGT 59.612 55.000 0.00 0.00 46.17 4.00
2366 2902 1.602165 CCACGTACACACAGACCTGTC 60.602 57.143 0.00 0.00 42.83 3.51
2367 2903 1.066454 CACGTACACACAGACCTGTCA 59.934 52.381 0.00 0.00 42.83 3.58
2368 2904 1.752498 ACGTACACACAGACCTGTCAA 59.248 47.619 0.00 0.00 42.83 3.18
2369 2905 2.166870 ACGTACACACAGACCTGTCAAA 59.833 45.455 0.00 0.00 42.83 2.69
2370 2906 3.191669 CGTACACACAGACCTGTCAAAA 58.808 45.455 0.00 0.00 42.83 2.44
2371 2907 3.000925 CGTACACACAGACCTGTCAAAAC 59.999 47.826 0.00 0.00 42.83 2.43
2372 2908 3.350219 ACACACAGACCTGTCAAAACT 57.650 42.857 0.00 0.00 42.83 2.66
2373 2909 3.009723 ACACACAGACCTGTCAAAACTG 58.990 45.455 0.00 0.00 42.83 3.16
2374 2910 3.270027 CACACAGACCTGTCAAAACTGA 58.730 45.455 0.00 0.00 42.83 3.41
2375 2911 3.689161 CACACAGACCTGTCAAAACTGAA 59.311 43.478 0.00 0.00 42.83 3.02
2376 2912 4.155826 CACACAGACCTGTCAAAACTGAAA 59.844 41.667 0.00 0.00 42.83 2.69
2377 2913 4.764823 ACACAGACCTGTCAAAACTGAAAA 59.235 37.500 0.00 0.00 42.83 2.29
2378 2914 5.106157 ACACAGACCTGTCAAAACTGAAAAG 60.106 40.000 0.00 0.00 42.83 2.27
2379 2915 5.123820 CACAGACCTGTCAAAACTGAAAAGA 59.876 40.000 0.00 0.00 42.83 2.52
2380 2916 5.123979 ACAGACCTGTCAAAACTGAAAAGAC 59.876 40.000 0.00 0.00 40.24 3.01
2381 2917 4.640647 AGACCTGTCAAAACTGAAAAGACC 59.359 41.667 0.00 0.00 0.00 3.85
2382 2918 3.377172 ACCTGTCAAAACTGAAAAGACCG 59.623 43.478 0.00 0.00 0.00 4.79
2383 2919 3.363178 CTGTCAAAACTGAAAAGACCGC 58.637 45.455 0.00 0.00 0.00 5.68
2384 2920 2.750166 TGTCAAAACTGAAAAGACCGCA 59.250 40.909 0.00 0.00 0.00 5.69
2385 2921 3.191581 TGTCAAAACTGAAAAGACCGCAA 59.808 39.130 0.00 0.00 0.00 4.85
2386 2922 4.170256 GTCAAAACTGAAAAGACCGCAAA 58.830 39.130 0.00 0.00 0.00 3.68
2387 2923 4.623595 GTCAAAACTGAAAAGACCGCAAAA 59.376 37.500 0.00 0.00 0.00 2.44
2388 2924 4.623595 TCAAAACTGAAAAGACCGCAAAAC 59.376 37.500 0.00 0.00 0.00 2.43
2389 2925 2.468532 ACTGAAAAGACCGCAAAACG 57.531 45.000 0.00 0.00 43.15 3.60
2390 2926 1.120437 CTGAAAAGACCGCAAAACGC 58.880 50.000 0.00 0.00 41.76 4.84
2391 2927 0.736053 TGAAAAGACCGCAAAACGCT 59.264 45.000 0.00 0.00 41.76 5.07
2392 2928 1.941294 TGAAAAGACCGCAAAACGCTA 59.059 42.857 0.00 0.00 41.76 4.26
2393 2929 2.355132 TGAAAAGACCGCAAAACGCTAA 59.645 40.909 0.00 0.00 41.76 3.09
2394 2930 2.394545 AAAGACCGCAAAACGCTAAC 57.605 45.000 0.00 0.00 41.76 2.34
2395 2931 0.589708 AAGACCGCAAAACGCTAACC 59.410 50.000 0.00 0.00 41.76 2.85
2396 2932 0.250166 AGACCGCAAAACGCTAACCT 60.250 50.000 0.00 0.00 41.76 3.50
2397 2933 0.589708 GACCGCAAAACGCTAACCTT 59.410 50.000 0.00 0.00 41.76 3.50
2398 2934 1.002142 GACCGCAAAACGCTAACCTTT 60.002 47.619 0.00 0.00 41.76 3.11
2399 2935 1.268845 ACCGCAAAACGCTAACCTTTG 60.269 47.619 0.00 0.00 41.76 2.77
2403 2939 2.803451 CAAAACGCTAACCTTTGCACA 58.197 42.857 0.00 0.00 0.00 4.57
2404 2940 2.774439 AAACGCTAACCTTTGCACAG 57.226 45.000 0.00 0.00 0.00 3.66
2405 2941 1.961793 AACGCTAACCTTTGCACAGA 58.038 45.000 0.17 0.00 0.00 3.41
2406 2942 1.961793 ACGCTAACCTTTGCACAGAA 58.038 45.000 0.17 0.00 0.00 3.02
2407 2943 1.873591 ACGCTAACCTTTGCACAGAAG 59.126 47.619 0.17 0.00 0.00 2.85
2408 2944 2.143122 CGCTAACCTTTGCACAGAAGA 58.857 47.619 0.17 0.00 0.00 2.87
2409 2945 2.548057 CGCTAACCTTTGCACAGAAGAA 59.452 45.455 0.17 0.00 0.00 2.52
2410 2946 3.607078 CGCTAACCTTTGCACAGAAGAAC 60.607 47.826 0.17 0.00 0.00 3.01
2411 2947 3.315191 GCTAACCTTTGCACAGAAGAACA 59.685 43.478 0.17 0.00 0.00 3.18
2412 2948 4.555511 GCTAACCTTTGCACAGAAGAACAG 60.556 45.833 0.17 0.00 0.00 3.16
2413 2949 3.004752 ACCTTTGCACAGAAGAACAGT 57.995 42.857 0.17 0.00 0.00 3.55
2414 2950 4.150897 ACCTTTGCACAGAAGAACAGTA 57.849 40.909 0.17 0.00 0.00 2.74
2415 2951 4.130118 ACCTTTGCACAGAAGAACAGTAG 58.870 43.478 0.17 0.00 0.00 2.57
2416 2952 3.058639 CCTTTGCACAGAAGAACAGTAGC 60.059 47.826 0.17 0.00 0.00 3.58
2417 2953 2.169832 TGCACAGAAGAACAGTAGCC 57.830 50.000 0.00 0.00 0.00 3.93
2418 2954 1.416030 TGCACAGAAGAACAGTAGCCA 59.584 47.619 0.00 0.00 0.00 4.75
2419 2955 2.158827 TGCACAGAAGAACAGTAGCCAA 60.159 45.455 0.00 0.00 0.00 4.52
2420 2956 2.481952 GCACAGAAGAACAGTAGCCAAG 59.518 50.000 0.00 0.00 0.00 3.61
2421 2957 3.803715 GCACAGAAGAACAGTAGCCAAGA 60.804 47.826 0.00 0.00 0.00 3.02
2422 2958 4.380531 CACAGAAGAACAGTAGCCAAGAA 58.619 43.478 0.00 0.00 0.00 2.52
2423 2959 4.816385 CACAGAAGAACAGTAGCCAAGAAA 59.184 41.667 0.00 0.00 0.00 2.52
2424 2960 5.049818 CACAGAAGAACAGTAGCCAAGAAAG 60.050 44.000 0.00 0.00 0.00 2.62
2425 2961 5.163301 ACAGAAGAACAGTAGCCAAGAAAGA 60.163 40.000 0.00 0.00 0.00 2.52
2426 2962 5.760253 CAGAAGAACAGTAGCCAAGAAAGAA 59.240 40.000 0.00 0.00 0.00 2.52
2427 2963 6.260936 CAGAAGAACAGTAGCCAAGAAAGAAA 59.739 38.462 0.00 0.00 0.00 2.52
2428 2964 6.828785 AGAAGAACAGTAGCCAAGAAAGAAAA 59.171 34.615 0.00 0.00 0.00 2.29
2429 2965 7.503902 AGAAGAACAGTAGCCAAGAAAGAAAAT 59.496 33.333 0.00 0.00 0.00 1.82
2430 2966 7.588497 AGAACAGTAGCCAAGAAAGAAAATT 57.412 32.000 0.00 0.00 0.00 1.82
2431 2967 8.691661 AGAACAGTAGCCAAGAAAGAAAATTA 57.308 30.769 0.00 0.00 0.00 1.40
2432 2968 8.568794 AGAACAGTAGCCAAGAAAGAAAATTAC 58.431 33.333 0.00 0.00 0.00 1.89
2433 2969 7.817418 ACAGTAGCCAAGAAAGAAAATTACA 57.183 32.000 0.00 0.00 0.00 2.41
2434 2970 8.232913 ACAGTAGCCAAGAAAGAAAATTACAA 57.767 30.769 0.00 0.00 0.00 2.41
2435 2971 8.860088 ACAGTAGCCAAGAAAGAAAATTACAAT 58.140 29.630 0.00 0.00 0.00 2.71
2436 2972 9.346725 CAGTAGCCAAGAAAGAAAATTACAATC 57.653 33.333 0.00 0.00 0.00 2.67
2437 2973 8.237267 AGTAGCCAAGAAAGAAAATTACAATCG 58.763 33.333 0.00 0.00 0.00 3.34
2438 2974 7.214467 AGCCAAGAAAGAAAATTACAATCGA 57.786 32.000 0.00 0.00 0.00 3.59
2439 2975 7.308435 AGCCAAGAAAGAAAATTACAATCGAG 58.692 34.615 0.00 0.00 0.00 4.04
2440 2976 7.174946 AGCCAAGAAAGAAAATTACAATCGAGA 59.825 33.333 0.00 0.00 0.00 4.04
2441 2977 7.271438 GCCAAGAAAGAAAATTACAATCGAGAC 59.729 37.037 0.00 0.00 0.00 3.36
2442 2978 7.750903 CCAAGAAAGAAAATTACAATCGAGACC 59.249 37.037 0.00 0.00 0.00 3.85
2443 2979 7.061752 AGAAAGAAAATTACAATCGAGACCG 57.938 36.000 0.00 0.00 37.07 4.79
2454 2990 2.421751 TCGAGACCGAAGAATCCTCT 57.578 50.000 0.00 0.00 42.51 3.69
2455 2991 2.290464 TCGAGACCGAAGAATCCTCTC 58.710 52.381 0.00 0.00 42.51 3.20
2456 2992 2.017782 CGAGACCGAAGAATCCTCTCA 58.982 52.381 0.00 0.00 38.22 3.27
2457 2993 2.032799 CGAGACCGAAGAATCCTCTCAG 59.967 54.545 0.00 0.00 38.22 3.35
2458 2994 1.754226 AGACCGAAGAATCCTCTCAGC 59.246 52.381 0.00 0.00 0.00 4.26
2459 2995 1.754226 GACCGAAGAATCCTCTCAGCT 59.246 52.381 0.00 0.00 0.00 4.24
2460 2996 2.167487 GACCGAAGAATCCTCTCAGCTT 59.833 50.000 0.00 0.00 0.00 3.74
2461 2997 2.093764 ACCGAAGAATCCTCTCAGCTTG 60.094 50.000 0.00 0.00 0.00 4.01
2462 2998 2.167281 CCGAAGAATCCTCTCAGCTTGA 59.833 50.000 0.00 0.00 0.00 3.02
2463 2999 3.186119 CGAAGAATCCTCTCAGCTTGAC 58.814 50.000 0.00 0.00 0.00 3.18
2464 3000 3.367806 CGAAGAATCCTCTCAGCTTGACA 60.368 47.826 0.00 0.00 0.00 3.58
2465 3001 4.680172 CGAAGAATCCTCTCAGCTTGACAT 60.680 45.833 0.00 0.00 0.00 3.06
2466 3002 4.405116 AGAATCCTCTCAGCTTGACATC 57.595 45.455 0.00 0.00 0.00 3.06
2467 3003 3.773667 AGAATCCTCTCAGCTTGACATCA 59.226 43.478 0.00 0.00 0.00 3.07
2468 3004 4.224594 AGAATCCTCTCAGCTTGACATCAA 59.775 41.667 0.00 0.00 0.00 2.57
2469 3005 3.325293 TCCTCTCAGCTTGACATCAAC 57.675 47.619 0.00 0.00 0.00 3.18
2470 3006 1.998315 CCTCTCAGCTTGACATCAACG 59.002 52.381 0.00 0.00 0.00 4.10
2471 3007 2.611473 CCTCTCAGCTTGACATCAACGT 60.611 50.000 0.00 0.00 0.00 3.99
2472 3008 2.665537 CTCTCAGCTTGACATCAACGTC 59.334 50.000 0.00 0.00 36.40 4.34
2473 3009 1.728971 CTCAGCTTGACATCAACGTCC 59.271 52.381 0.00 0.00 34.88 4.79
2474 3010 0.439985 CAGCTTGACATCAACGTCCG 59.560 55.000 0.00 0.00 34.88 4.79
2475 3011 0.033504 AGCTTGACATCAACGTCCGT 59.966 50.000 0.00 0.00 34.88 4.69
2476 3012 0.438830 GCTTGACATCAACGTCCGTC 59.561 55.000 0.00 0.00 34.88 4.79
2477 3013 1.778334 CTTGACATCAACGTCCGTCA 58.222 50.000 0.00 0.00 36.63 4.35
2478 3014 1.455786 CTTGACATCAACGTCCGTCAC 59.544 52.381 8.31 0.00 38.07 3.67
2479 3015 0.671796 TGACATCAACGTCCGTCACT 59.328 50.000 0.00 0.00 33.61 3.41
2480 3016 1.067974 TGACATCAACGTCCGTCACTT 59.932 47.619 0.00 0.00 33.61 3.16
2481 3017 1.455786 GACATCAACGTCCGTCACTTG 59.544 52.381 0.00 0.00 0.00 3.16
2482 3018 1.202486 ACATCAACGTCCGTCACTTGT 60.202 47.619 0.00 0.00 0.00 3.16
2483 3019 1.455786 CATCAACGTCCGTCACTTGTC 59.544 52.381 0.00 0.00 0.00 3.18
2484 3020 0.742505 TCAACGTCCGTCACTTGTCT 59.257 50.000 0.00 0.00 0.00 3.41
2485 3021 1.948834 TCAACGTCCGTCACTTGTCTA 59.051 47.619 0.00 0.00 0.00 2.59
2486 3022 2.555325 TCAACGTCCGTCACTTGTCTAT 59.445 45.455 0.00 0.00 0.00 1.98
2487 3023 2.631418 ACGTCCGTCACTTGTCTATG 57.369 50.000 0.00 0.00 0.00 2.23
2488 3024 1.201647 ACGTCCGTCACTTGTCTATGG 59.798 52.381 0.00 0.00 0.00 2.74
2489 3025 1.641577 GTCCGTCACTTGTCTATGGC 58.358 55.000 0.00 0.00 0.00 4.40
2490 3026 0.172578 TCCGTCACTTGTCTATGGCG 59.827 55.000 0.00 0.00 43.43 5.69
2491 3027 1.421410 CCGTCACTTGTCTATGGCGC 61.421 60.000 0.00 0.00 42.48 6.53
2492 3028 1.421410 CGTCACTTGTCTATGGCGCC 61.421 60.000 22.73 22.73 37.09 6.53
2493 3029 0.391130 GTCACTTGTCTATGGCGCCA 60.391 55.000 34.80 34.80 0.00 5.69
2494 3030 0.391130 TCACTTGTCTATGGCGCCAC 60.391 55.000 35.50 20.34 0.00 5.01
2495 3031 0.391661 CACTTGTCTATGGCGCCACT 60.392 55.000 35.50 22.86 0.00 4.00
2496 3032 1.134818 CACTTGTCTATGGCGCCACTA 60.135 52.381 35.50 22.75 0.00 2.74
2497 3033 1.137086 ACTTGTCTATGGCGCCACTAG 59.863 52.381 35.50 29.81 0.00 2.57
2498 3034 1.409064 CTTGTCTATGGCGCCACTAGA 59.591 52.381 35.50 31.37 0.00 2.43
2499 3035 1.032794 TGTCTATGGCGCCACTAGAG 58.967 55.000 35.50 25.16 0.00 2.43
2500 3036 0.319125 GTCTATGGCGCCACTAGAGC 60.319 60.000 35.50 24.18 0.00 4.09
2501 3037 0.755327 TCTATGGCGCCACTAGAGCA 60.755 55.000 35.50 14.96 0.00 4.26
2502 3038 0.104855 CTATGGCGCCACTAGAGCAA 59.895 55.000 35.50 5.26 0.00 3.91
2503 3039 0.179084 TATGGCGCCACTAGAGCAAC 60.179 55.000 35.50 0.00 0.00 4.17
2504 3040 2.820037 GGCGCCACTAGAGCAACC 60.820 66.667 24.80 0.00 0.00 3.77
2505 3041 2.047274 GCGCCACTAGAGCAACCA 60.047 61.111 0.00 0.00 0.00 3.67
2506 3042 2.391389 GCGCCACTAGAGCAACCAC 61.391 63.158 0.00 0.00 0.00 4.16
2507 3043 1.741770 CGCCACTAGAGCAACCACC 60.742 63.158 0.00 0.00 0.00 4.61
2508 3044 1.374947 GCCACTAGAGCAACCACCA 59.625 57.895 0.00 0.00 0.00 4.17
2509 3045 0.250727 GCCACTAGAGCAACCACCAA 60.251 55.000 0.00 0.00 0.00 3.67
2510 3046 1.817740 GCCACTAGAGCAACCACCAAA 60.818 52.381 0.00 0.00 0.00 3.28
2511 3047 2.582052 CCACTAGAGCAACCACCAAAA 58.418 47.619 0.00 0.00 0.00 2.44
2512 3048 2.955660 CCACTAGAGCAACCACCAAAAA 59.044 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.719705 AGTCCTAGCCCTGTATCTAGCT 59.280 50.000 0.00 0.00 39.37 3.32
74 75 0.945099 CGTCTGTATCTAGCGCCTCA 59.055 55.000 2.29 0.00 0.00 3.86
89 90 0.240411 GGTCAGTCGCTGTAACGTCT 59.760 55.000 6.72 0.00 32.61 4.18
151 152 0.595095 GAAGCACAACAGGAGCCAAG 59.405 55.000 0.00 0.00 33.04 3.61
235 236 2.683933 AGGTGTAGGAGGCGTGGG 60.684 66.667 0.00 0.00 0.00 4.61
261 262 2.158755 AGTGGCCTAGGTAATGCATGTC 60.159 50.000 11.31 0.00 0.00 3.06
262 263 1.846439 AGTGGCCTAGGTAATGCATGT 59.154 47.619 11.31 0.00 0.00 3.21
297 298 4.148825 GTGCAGGAGTCGGCCGAT 62.149 66.667 33.58 20.19 33.09 4.18
349 350 3.059982 CCAGCAAGGTCGTCTCCA 58.940 61.111 0.00 0.00 0.00 3.86
411 446 1.903404 CTGACCCAAACCACAGCCC 60.903 63.158 0.00 0.00 0.00 5.19
413 448 3.042560 GCTGACCCAAACCACAGC 58.957 61.111 0.00 0.00 46.25 4.40
415 450 2.203280 CCGCTGACCCAAACCACA 60.203 61.111 0.00 0.00 0.00 4.17
436 471 1.809619 CTGGTACATGGCGTCACCG 60.810 63.158 0.00 0.00 43.94 4.94
442 477 0.249489 GCCTAGACTGGTACATGGCG 60.249 60.000 0.00 0.00 38.20 5.69
451 486 1.002274 AGGTGGGAGCCTAGACTGG 59.998 63.158 0.00 0.00 37.04 4.00
560 1041 1.299648 CCTCTTCCCACAATGCCGA 59.700 57.895 0.00 0.00 0.00 5.54
562 1043 0.613012 AAGCCTCTTCCCACAATGCC 60.613 55.000 0.00 0.00 0.00 4.40
586 1067 1.000506 TCGGAAACTGACTCTTTCCCG 59.999 52.381 4.68 0.00 42.63 5.14
595 1076 1.135199 TCGCCTGTATCGGAAACTGAC 60.135 52.381 0.00 0.00 0.00 3.51
596 1077 1.179152 TCGCCTGTATCGGAAACTGA 58.821 50.000 0.00 0.00 0.00 3.41
613 1094 7.088589 ACAAATCTGATTACTCCCAAAATCG 57.911 36.000 2.85 0.00 35.32 3.34
621 1102 7.648510 CCGAACTAGTACAAATCTGATTACTCC 59.351 40.741 2.85 0.00 0.00 3.85
623 1104 8.289939 TCCGAACTAGTACAAATCTGATTACT 57.710 34.615 2.85 6.44 0.00 2.24
643 1124 6.231951 TGTTAACACAGGTATCAAATCCGAA 58.768 36.000 3.59 0.00 0.00 4.30
644 1125 5.795972 TGTTAACACAGGTATCAAATCCGA 58.204 37.500 3.59 0.00 0.00 4.55
680 1161 7.646446 ACCTTTAAAATATGTTTGGTTTCGC 57.354 32.000 0.00 0.00 0.00 4.70
775 1269 3.897505 ACAAAATTTTGGGACAGAGGGAG 59.102 43.478 29.37 5.40 42.39 4.30
776 1270 3.922375 ACAAAATTTTGGGACAGAGGGA 58.078 40.909 29.37 0.00 42.39 4.20
777 1271 4.832823 AGTACAAAATTTTGGGACAGAGGG 59.167 41.667 29.37 6.04 42.39 4.30
778 1272 7.519032 TTAGTACAAAATTTTGGGACAGAGG 57.481 36.000 29.37 6.70 42.39 3.69
779 1273 8.630037 ACTTTAGTACAAAATTTTGGGACAGAG 58.370 33.333 29.37 23.31 42.39 3.35
780 1274 8.528044 ACTTTAGTACAAAATTTTGGGACAGA 57.472 30.769 29.37 17.30 42.39 3.41
808 1302 9.673454 CCCAAAATAAGTGTCTTAACTTTGTAC 57.327 33.333 16.72 0.00 40.77 2.90
809 1303 9.629878 TCCCAAAATAAGTGTCTTAACTTTGTA 57.370 29.630 16.72 8.94 40.77 2.41
810 1304 8.410912 GTCCCAAAATAAGTGTCTTAACTTTGT 58.589 33.333 16.72 0.00 40.77 2.83
811 1305 7.589954 CGTCCCAAAATAAGTGTCTTAACTTTG 59.410 37.037 14.00 14.00 40.77 2.77
812 1306 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
813 1307 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
814 1308 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
815 1309 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
816 1310 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
817 1311 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
818 1312 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
819 1313 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
820 1314 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
821 1315 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
822 1316 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
823 1317 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
824 1318 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
825 1319 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
826 1320 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
827 1321 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
828 1322 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
829 1323 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
830 1324 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
831 1325 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
832 1326 3.735720 ATATAGTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
833 1327 4.198530 GCTATATAGTACTCCCTCCGTCC 58.801 52.174 11.38 0.00 0.00 4.79
834 1328 4.841422 TGCTATATAGTACTCCCTCCGTC 58.159 47.826 11.38 0.00 0.00 4.79
835 1329 4.923516 TGCTATATAGTACTCCCTCCGT 57.076 45.455 11.38 0.00 0.00 4.69
836 1330 5.254901 ACTTGCTATATAGTACTCCCTCCG 58.745 45.833 11.38 0.00 0.00 4.63
837 1331 8.826293 AATACTTGCTATATAGTACTCCCTCC 57.174 38.462 11.38 0.00 30.24 4.30
951 1445 4.711846 GGGGCCTCAGAGAAACAAATAAAT 59.288 41.667 0.84 0.00 0.00 1.40
985 1479 1.174783 AGCATTTGCAGAAGCTGGAG 58.825 50.000 6.13 0.00 45.16 3.86
1141 1654 2.728225 CGGTACACACAGATGACTCGAC 60.728 54.545 0.00 0.00 0.00 4.20
1147 1660 1.214325 CGCCGGTACACACAGATGA 59.786 57.895 1.90 0.00 0.00 2.92
1157 1670 2.461110 CCATGTTGCTCGCCGGTAC 61.461 63.158 1.90 0.00 0.00 3.34
1248 1761 4.080751 TCAATGCTCTGTCTGGATGATTGA 60.081 41.667 0.00 0.00 0.00 2.57
1267 1780 9.971922 TTCGATATCAGATGCGATAATATCAAT 57.028 29.630 10.01 0.00 31.80 2.57
1273 1786 7.196331 TCGATTTCGATATCAGATGCGATAAT 58.804 34.615 14.91 11.38 44.22 1.28
1275 1788 6.119144 TCGATTTCGATATCAGATGCGATA 57.881 37.500 14.91 6.95 44.22 2.92
1307 1820 3.809832 ACCATCGTCAGAACTTTCAACAG 59.190 43.478 0.00 0.00 0.00 3.16
1317 1830 0.037326 GCTCCACACCATCGTCAGAA 60.037 55.000 0.00 0.00 0.00 3.02
1350 1863 2.966708 CGAAAAATAATCGCCGCATCTG 59.033 45.455 0.00 0.00 33.07 2.90
1383 1896 2.673775 TTCCCATTTCACCAAGCTCA 57.326 45.000 0.00 0.00 0.00 4.26
1430 1943 1.153369 GAATCAGGTGCCTGCGCTA 60.153 57.895 9.73 0.00 43.31 4.26
1500 2013 9.174166 ACGAATCAAGCTTTATTTATAACCAGT 57.826 29.630 7.29 0.00 0.00 4.00
1533 2046 1.034838 TTGACCAACACACACCCAGC 61.035 55.000 0.00 0.00 0.00 4.85
1590 2107 2.305853 CGATGATCGGAGGCGCTTG 61.306 63.158 7.64 0.00 36.00 4.01
1595 2112 1.370657 GTCGACGATGATCGGAGGC 60.371 63.158 19.82 10.04 45.59 4.70
1607 2124 1.201998 ACAGTACACGCTATGTCGACG 60.202 52.381 11.62 0.31 42.09 5.12
1627 2144 5.716228 ACACAAGGAAGAATGAATATGCCAA 59.284 36.000 0.00 0.00 0.00 4.52
1636 2153 4.563580 GCTCAGGTACACAAGGAAGAATGA 60.564 45.833 0.00 0.00 0.00 2.57
1644 2161 0.687354 ACCAGCTCAGGTACACAAGG 59.313 55.000 0.00 0.00 40.98 3.61
1647 2164 4.634012 ATAAAACCAGCTCAGGTACACA 57.366 40.909 0.00 0.00 42.25 3.72
1665 2190 9.859427 GGTCAAAAACATCATTCATCTCAATAA 57.141 29.630 0.00 0.00 0.00 1.40
1694 2219 0.320771 AAGGTGGTTAGCTGAGCACG 60.321 55.000 27.82 0.00 46.20 5.34
1717 2242 0.396435 ACCCACAGCGAGTTGAATCA 59.604 50.000 0.00 0.00 0.00 2.57
1725 2250 2.002586 CAGATAACAACCCACAGCGAG 58.997 52.381 0.00 0.00 0.00 5.03
1785 2313 1.326213 CGACAGGTGAGGGAGCATCT 61.326 60.000 0.00 0.00 33.73 2.90
1805 2333 1.993370 GCTGTCGTACATCAGAACCAC 59.007 52.381 15.51 0.00 34.02 4.16
1840 2376 4.464008 TCCAAGTCAAAGAAATGAGCAGT 58.536 39.130 0.00 0.00 0.00 4.40
1881 2417 4.693566 TCTTTCTTGTTGTTTCGTCAGTGT 59.306 37.500 0.00 0.00 0.00 3.55
1899 2435 5.241728 ACAACAAATTAGGACCTGCTCTTTC 59.758 40.000 3.53 0.00 0.00 2.62
2002 2538 9.407380 CAGCAAGGGTAATGCCAAATATATATA 57.593 33.333 0.00 0.00 44.91 0.86
2003 2539 7.147846 GCAGCAAGGGTAATGCCAAATATATAT 60.148 37.037 0.00 0.00 44.91 0.86
2004 2540 6.152661 GCAGCAAGGGTAATGCCAAATATATA 59.847 38.462 0.00 0.00 44.91 0.86
2021 2557 1.228367 ACCAGACAAGGCAGCAAGG 60.228 57.895 0.00 0.00 0.00 3.61
2025 2561 2.432510 AGTATAGACCAGACAAGGCAGC 59.567 50.000 0.00 0.00 0.00 5.25
2031 2567 7.417911 CCTTGATTAGCAGTATAGACCAGACAA 60.418 40.741 0.00 0.00 0.00 3.18
2066 2602 3.848142 CGAGACCGTTCTGTGCAG 58.152 61.111 0.00 0.00 29.47 4.41
2127 2663 2.096335 CGGCGGATTGGGTTTTACTAAC 59.904 50.000 0.00 0.00 0.00 2.34
2164 2700 0.442310 CCGTTCTGTGCATGTTACGG 59.558 55.000 15.61 15.61 41.92 4.02
2165 2701 1.126113 GACCGTTCTGTGCATGTTACG 59.874 52.381 0.00 0.00 0.00 3.18
2166 2702 2.412089 GAGACCGTTCTGTGCATGTTAC 59.588 50.000 0.00 0.00 29.47 2.50
2167 2703 2.683968 GAGACCGTTCTGTGCATGTTA 58.316 47.619 0.00 0.00 29.47 2.41
2168 2704 1.512926 GAGACCGTTCTGTGCATGTT 58.487 50.000 0.00 0.00 29.47 2.71
2169 2705 0.667487 CGAGACCGTTCTGTGCATGT 60.667 55.000 0.00 0.00 29.47 3.21
2170 2706 2.073307 CGAGACCGTTCTGTGCATG 58.927 57.895 0.00 0.00 29.47 4.06
2171 2707 4.578913 CGAGACCGTTCTGTGCAT 57.421 55.556 0.00 0.00 29.47 3.96
2181 2717 4.637968 CAACATCATACAAAACGAGACCG 58.362 43.478 0.00 0.00 42.50 4.79
2182 2718 4.403453 GCAACATCATACAAAACGAGACC 58.597 43.478 0.00 0.00 0.00 3.85
2183 2719 4.083537 TGGCAACATCATACAAAACGAGAC 60.084 41.667 0.00 0.00 46.17 3.36
2184 2720 4.068599 TGGCAACATCATACAAAACGAGA 58.931 39.130 0.00 0.00 46.17 4.04
2185 2721 4.418013 TGGCAACATCATACAAAACGAG 57.582 40.909 0.00 0.00 46.17 4.18
2195 2731 9.337987 TGATAGATCATCCCTTGGCAACATCAT 62.338 40.741 0.00 0.00 38.74 2.45
2196 2732 8.112111 TGATAGATCATCCCTTGGCAACATCA 62.112 42.308 0.00 0.00 38.74 3.07
2197 2733 5.746952 TGATAGATCATCCCTTGGCAACATC 60.747 44.000 0.00 0.00 38.74 3.06
2198 2734 4.105217 TGATAGATCATCCCTTGGCAACAT 59.895 41.667 0.00 0.00 38.74 2.71
2199 2735 3.459227 TGATAGATCATCCCTTGGCAACA 59.541 43.478 0.00 0.00 37.62 3.33
2200 2736 4.070716 CTGATAGATCATCCCTTGGCAAC 58.929 47.826 0.00 0.00 36.02 4.17
2201 2737 3.497405 GCTGATAGATCATCCCTTGGCAA 60.497 47.826 0.00 0.00 36.02 4.52
2202 2738 2.039480 GCTGATAGATCATCCCTTGGCA 59.961 50.000 0.00 0.00 36.02 4.92
2203 2739 2.039480 TGCTGATAGATCATCCCTTGGC 59.961 50.000 0.00 0.00 36.02 4.52
2204 2740 4.571369 ATGCTGATAGATCATCCCTTGG 57.429 45.455 0.00 0.00 36.02 3.61
2205 2741 6.651086 ACATATGCTGATAGATCATCCCTTG 58.349 40.000 1.58 0.00 36.02 3.61
2206 2742 6.887886 ACATATGCTGATAGATCATCCCTT 57.112 37.500 1.58 0.00 36.02 3.95
2207 2743 6.887886 AACATATGCTGATAGATCATCCCT 57.112 37.500 1.58 0.00 36.02 4.20
2208 2744 6.883217 ACAAACATATGCTGATAGATCATCCC 59.117 38.462 11.36 0.00 36.02 3.85
2209 2745 7.918536 ACAAACATATGCTGATAGATCATCC 57.081 36.000 11.36 0.00 36.02 3.51
2218 2754 8.466798 GGGTTTTACTAACAAACATATGCTGAT 58.533 33.333 11.36 3.57 36.07 2.90
2219 2755 7.448777 TGGGTTTTACTAACAAACATATGCTGA 59.551 33.333 11.36 0.00 36.07 4.26
2220 2756 7.598278 TGGGTTTTACTAACAAACATATGCTG 58.402 34.615 1.58 3.20 36.07 4.41
2221 2757 7.768807 TGGGTTTTACTAACAAACATATGCT 57.231 32.000 1.58 0.00 36.07 3.79
2222 2758 8.996024 ATTGGGTTTTACTAACAAACATATGC 57.004 30.769 1.58 0.00 36.07 3.14
2223 2759 9.581099 GGATTGGGTTTTACTAACAAACATATG 57.419 33.333 0.00 0.00 36.07 1.78
2224 2760 8.463607 CGGATTGGGTTTTACTAACAAACATAT 58.536 33.333 0.00 0.00 36.07 1.78
2225 2761 7.575343 GCGGATTGGGTTTTACTAACAAACATA 60.575 37.037 0.00 0.00 36.07 2.29
2226 2762 6.683715 CGGATTGGGTTTTACTAACAAACAT 58.316 36.000 0.00 0.00 36.07 2.71
2227 2763 5.507650 GCGGATTGGGTTTTACTAACAAACA 60.508 40.000 0.00 0.00 36.07 2.83
2228 2764 4.919168 GCGGATTGGGTTTTACTAACAAAC 59.081 41.667 0.00 0.00 33.98 2.93
2229 2765 4.022155 GGCGGATTGGGTTTTACTAACAAA 60.022 41.667 0.00 0.00 0.00 2.83
2230 2766 3.506844 GGCGGATTGGGTTTTACTAACAA 59.493 43.478 0.00 0.00 0.00 2.83
2231 2767 3.083293 GGCGGATTGGGTTTTACTAACA 58.917 45.455 0.00 0.00 0.00 2.41
2232 2768 2.096335 CGGCGGATTGGGTTTTACTAAC 59.904 50.000 0.00 0.00 0.00 2.34
2233 2769 2.290197 ACGGCGGATTGGGTTTTACTAA 60.290 45.455 13.24 0.00 0.00 2.24
2234 2770 1.278699 ACGGCGGATTGGGTTTTACTA 59.721 47.619 13.24 0.00 0.00 1.82
2235 2771 0.037160 ACGGCGGATTGGGTTTTACT 59.963 50.000 13.24 0.00 0.00 2.24
2236 2772 0.883153 AACGGCGGATTGGGTTTTAC 59.117 50.000 13.24 0.00 0.00 2.01
2237 2773 2.486472 TAACGGCGGATTGGGTTTTA 57.514 45.000 13.24 0.00 0.00 1.52
2238 2774 1.270274 GTTAACGGCGGATTGGGTTTT 59.730 47.619 13.24 0.00 0.00 2.43
2239 2775 0.883153 GTTAACGGCGGATTGGGTTT 59.117 50.000 13.24 0.00 0.00 3.27
2240 2776 1.300266 CGTTAACGGCGGATTGGGTT 61.300 55.000 20.24 0.00 35.37 4.11
2241 2777 1.742510 CGTTAACGGCGGATTGGGT 60.743 57.895 20.24 0.00 35.37 4.51
2242 2778 3.095032 CGTTAACGGCGGATTGGG 58.905 61.111 20.24 0.00 35.37 4.12
2252 2788 1.864176 GGGTGACTTGCCGTTAACG 59.136 57.895 20.99 20.99 39.44 3.18
2253 2789 0.881600 ACGGGTGACTTGCCGTTAAC 60.882 55.000 0.00 0.00 35.29 2.01
2254 2790 0.678395 TACGGGTGACTTGCCGTTAA 59.322 50.000 9.53 0.00 39.60 2.01
2255 2791 0.678395 TTACGGGTGACTTGCCGTTA 59.322 50.000 9.53 0.00 39.60 3.18
2256 2792 0.881600 GTTACGGGTGACTTGCCGTT 60.882 55.000 9.53 0.00 39.60 4.44
2257 2793 1.301165 GTTACGGGTGACTTGCCGT 60.301 57.895 9.24 9.24 41.74 5.68
2258 2794 0.672401 ATGTTACGGGTGACTTGCCG 60.672 55.000 0.00 0.00 0.00 5.69
2259 2795 0.802494 CATGTTACGGGTGACTTGCC 59.198 55.000 0.00 0.00 0.00 4.52
2260 2796 1.463444 GTCATGTTACGGGTGACTTGC 59.537 52.381 7.69 0.00 39.24 4.01
2264 2800 3.863424 CACATAGTCATGTTACGGGTGAC 59.137 47.826 7.08 7.08 42.98 3.67
2324 2860 8.035394 CGTGGCTTGTAATATGATCCTTACTAT 58.965 37.037 9.82 0.00 0.00 2.12
2325 2861 7.014905 ACGTGGCTTGTAATATGATCCTTACTA 59.985 37.037 0.00 4.00 0.00 1.82
2326 2862 6.183360 ACGTGGCTTGTAATATGATCCTTACT 60.183 38.462 0.00 0.00 0.00 2.24
2327 2863 5.989777 ACGTGGCTTGTAATATGATCCTTAC 59.010 40.000 0.00 0.00 0.00 2.34
2328 2864 6.169557 ACGTGGCTTGTAATATGATCCTTA 57.830 37.500 0.00 0.00 0.00 2.69
2329 2865 5.036117 ACGTGGCTTGTAATATGATCCTT 57.964 39.130 0.00 0.00 0.00 3.36
2330 2866 4.689612 ACGTGGCTTGTAATATGATCCT 57.310 40.909 0.00 0.00 0.00 3.24
2331 2867 5.176958 GTGTACGTGGCTTGTAATATGATCC 59.823 44.000 0.00 0.00 0.00 3.36
2332 2868 5.751509 TGTGTACGTGGCTTGTAATATGATC 59.248 40.000 0.00 0.00 0.00 2.92
2333 2869 5.522460 GTGTGTACGTGGCTTGTAATATGAT 59.478 40.000 0.00 0.00 0.00 2.45
2334 2870 4.865925 GTGTGTACGTGGCTTGTAATATGA 59.134 41.667 0.00 0.00 0.00 2.15
2335 2871 4.627900 TGTGTGTACGTGGCTTGTAATATG 59.372 41.667 0.00 0.00 0.00 1.78
2336 2872 4.823157 TGTGTGTACGTGGCTTGTAATAT 58.177 39.130 0.00 0.00 0.00 1.28
2337 2873 4.022155 TCTGTGTGTACGTGGCTTGTAATA 60.022 41.667 0.00 0.00 0.00 0.98
2338 2874 3.064207 CTGTGTGTACGTGGCTTGTAAT 58.936 45.455 0.00 0.00 0.00 1.89
2339 2875 2.101082 TCTGTGTGTACGTGGCTTGTAA 59.899 45.455 0.00 0.00 0.00 2.41
2340 2876 1.682323 TCTGTGTGTACGTGGCTTGTA 59.318 47.619 0.00 0.00 0.00 2.41
2341 2877 0.462375 TCTGTGTGTACGTGGCTTGT 59.538 50.000 0.00 0.00 0.00 3.16
2342 2878 0.859232 GTCTGTGTGTACGTGGCTTG 59.141 55.000 0.00 0.00 0.00 4.01
2343 2879 0.249741 GGTCTGTGTGTACGTGGCTT 60.250 55.000 0.00 0.00 0.00 4.35
2344 2880 1.113517 AGGTCTGTGTGTACGTGGCT 61.114 55.000 0.00 0.00 0.00 4.75
2345 2881 0.944311 CAGGTCTGTGTGTACGTGGC 60.944 60.000 0.00 0.00 0.00 5.01
2346 2882 0.387929 ACAGGTCTGTGTGTACGTGG 59.612 55.000 0.00 0.00 43.11 4.94
2347 2883 1.066454 TGACAGGTCTGTGTGTACGTG 59.934 52.381 8.49 0.00 45.05 4.49
2348 2884 1.395635 TGACAGGTCTGTGTGTACGT 58.604 50.000 8.49 0.00 45.05 3.57
2349 2885 2.502213 TTGACAGGTCTGTGTGTACG 57.498 50.000 8.49 0.00 45.05 3.67
2350 2886 4.034048 CAGTTTTGACAGGTCTGTGTGTAC 59.966 45.833 8.49 2.43 45.05 2.90
2351 2887 4.081365 TCAGTTTTGACAGGTCTGTGTGTA 60.081 41.667 8.49 0.00 45.05 2.90
2352 2888 3.009723 CAGTTTTGACAGGTCTGTGTGT 58.990 45.455 8.49 0.00 45.05 3.72
2353 2889 3.270027 TCAGTTTTGACAGGTCTGTGTG 58.730 45.455 8.49 0.00 45.05 3.82
2354 2890 3.627395 TCAGTTTTGACAGGTCTGTGT 57.373 42.857 8.49 0.00 45.05 3.72
2355 2891 4.963276 TTTCAGTTTTGACAGGTCTGTG 57.037 40.909 8.49 0.00 45.05 3.66
2357 2893 5.449177 GGTCTTTTCAGTTTTGACAGGTCTG 60.449 44.000 0.65 0.00 31.71 3.51
2358 2894 4.640647 GGTCTTTTCAGTTTTGACAGGTCT 59.359 41.667 0.65 0.00 31.71 3.85
2359 2895 4.495844 CGGTCTTTTCAGTTTTGACAGGTC 60.496 45.833 0.00 0.00 31.71 3.85
2360 2896 3.377172 CGGTCTTTTCAGTTTTGACAGGT 59.623 43.478 0.00 0.00 31.71 4.00
2361 2897 3.792124 GCGGTCTTTTCAGTTTTGACAGG 60.792 47.826 0.00 0.00 31.71 4.00
2362 2898 3.181501 TGCGGTCTTTTCAGTTTTGACAG 60.182 43.478 0.00 0.00 31.71 3.51
2363 2899 2.750166 TGCGGTCTTTTCAGTTTTGACA 59.250 40.909 0.00 0.00 31.71 3.58
2364 2900 3.414549 TGCGGTCTTTTCAGTTTTGAC 57.585 42.857 0.00 0.00 31.71 3.18
2365 2901 4.442375 TTTGCGGTCTTTTCAGTTTTGA 57.558 36.364 0.00 0.00 0.00 2.69
2366 2902 4.490160 CGTTTTGCGGTCTTTTCAGTTTTG 60.490 41.667 0.00 0.00 36.85 2.44
2367 2903 3.610677 CGTTTTGCGGTCTTTTCAGTTTT 59.389 39.130 0.00 0.00 36.85 2.43
2368 2904 3.175929 CGTTTTGCGGTCTTTTCAGTTT 58.824 40.909 0.00 0.00 36.85 2.66
2369 2905 2.792749 CGTTTTGCGGTCTTTTCAGTT 58.207 42.857 0.00 0.00 36.85 3.16
2370 2906 1.533129 GCGTTTTGCGGTCTTTTCAGT 60.533 47.619 0.00 0.00 41.69 3.41
2371 2907 1.120437 GCGTTTTGCGGTCTTTTCAG 58.880 50.000 0.00 0.00 41.69 3.02
2372 2908 3.243855 GCGTTTTGCGGTCTTTTCA 57.756 47.368 0.00 0.00 41.69 2.69
2382 2918 1.521006 GTGCAAAGGTTAGCGTTTTGC 59.479 47.619 17.37 17.37 46.98 3.68
2383 2919 2.788786 CTGTGCAAAGGTTAGCGTTTTG 59.211 45.455 0.00 0.00 31.23 2.44
2384 2920 2.685897 TCTGTGCAAAGGTTAGCGTTTT 59.314 40.909 3.47 0.00 31.23 2.43
2385 2921 2.294074 TCTGTGCAAAGGTTAGCGTTT 58.706 42.857 3.47 0.00 33.54 3.60
2386 2922 1.961793 TCTGTGCAAAGGTTAGCGTT 58.038 45.000 3.47 0.00 0.00 4.84
2387 2923 1.873591 CTTCTGTGCAAAGGTTAGCGT 59.126 47.619 3.47 0.00 0.00 5.07
2388 2924 2.143122 TCTTCTGTGCAAAGGTTAGCG 58.857 47.619 3.47 0.00 0.00 4.26
2389 2925 3.315191 TGTTCTTCTGTGCAAAGGTTAGC 59.685 43.478 3.47 0.00 0.00 3.09
2390 2926 4.576463 ACTGTTCTTCTGTGCAAAGGTTAG 59.424 41.667 3.47 0.00 0.00 2.34
2391 2927 4.523083 ACTGTTCTTCTGTGCAAAGGTTA 58.477 39.130 3.47 0.00 0.00 2.85
2392 2928 3.356290 ACTGTTCTTCTGTGCAAAGGTT 58.644 40.909 3.47 0.00 0.00 3.50
2393 2929 3.004752 ACTGTTCTTCTGTGCAAAGGT 57.995 42.857 3.47 0.00 0.00 3.50
2394 2930 3.058639 GCTACTGTTCTTCTGTGCAAAGG 60.059 47.826 3.47 0.00 0.00 3.11
2395 2931 3.058639 GGCTACTGTTCTTCTGTGCAAAG 60.059 47.826 0.00 0.00 0.00 2.77
2396 2932 2.878406 GGCTACTGTTCTTCTGTGCAAA 59.122 45.455 0.00 0.00 0.00 3.68
2397 2933 2.158827 TGGCTACTGTTCTTCTGTGCAA 60.159 45.455 0.00 0.00 0.00 4.08
2398 2934 1.416030 TGGCTACTGTTCTTCTGTGCA 59.584 47.619 0.00 0.00 0.00 4.57
2399 2935 2.169832 TGGCTACTGTTCTTCTGTGC 57.830 50.000 0.00 0.00 0.00 4.57
2400 2936 3.995199 TCTTGGCTACTGTTCTTCTGTG 58.005 45.455 0.00 0.00 0.00 3.66
2401 2937 4.689612 TTCTTGGCTACTGTTCTTCTGT 57.310 40.909 0.00 0.00 0.00 3.41
2402 2938 5.300752 TCTTTCTTGGCTACTGTTCTTCTG 58.699 41.667 0.00 0.00 0.00 3.02
2403 2939 5.552870 TCTTTCTTGGCTACTGTTCTTCT 57.447 39.130 0.00 0.00 0.00 2.85
2404 2940 6.619801 TTTCTTTCTTGGCTACTGTTCTTC 57.380 37.500 0.00 0.00 0.00 2.87
2405 2941 7.588497 ATTTTCTTTCTTGGCTACTGTTCTT 57.412 32.000 0.00 0.00 0.00 2.52
2406 2942 7.588497 AATTTTCTTTCTTGGCTACTGTTCT 57.412 32.000 0.00 0.00 0.00 3.01
2407 2943 8.349983 TGTAATTTTCTTTCTTGGCTACTGTTC 58.650 33.333 0.00 0.00 0.00 3.18
2408 2944 8.232913 TGTAATTTTCTTTCTTGGCTACTGTT 57.767 30.769 0.00 0.00 0.00 3.16
2409 2945 7.817418 TGTAATTTTCTTTCTTGGCTACTGT 57.183 32.000 0.00 0.00 0.00 3.55
2410 2946 9.346725 GATTGTAATTTTCTTTCTTGGCTACTG 57.653 33.333 0.00 0.00 0.00 2.74
2411 2947 8.237267 CGATTGTAATTTTCTTTCTTGGCTACT 58.763 33.333 0.00 0.00 0.00 2.57
2412 2948 8.234546 TCGATTGTAATTTTCTTTCTTGGCTAC 58.765 33.333 0.00 0.00 0.00 3.58
2413 2949 8.330466 TCGATTGTAATTTTCTTTCTTGGCTA 57.670 30.769 0.00 0.00 0.00 3.93
2414 2950 7.174946 TCTCGATTGTAATTTTCTTTCTTGGCT 59.825 33.333 0.00 0.00 0.00 4.75
2415 2951 7.271438 GTCTCGATTGTAATTTTCTTTCTTGGC 59.729 37.037 0.00 0.00 0.00 4.52
2416 2952 7.750903 GGTCTCGATTGTAATTTTCTTTCTTGG 59.249 37.037 0.00 0.00 0.00 3.61
2417 2953 7.478667 CGGTCTCGATTGTAATTTTCTTTCTTG 59.521 37.037 0.00 0.00 39.00 3.02
2418 2954 7.386848 TCGGTCTCGATTGTAATTTTCTTTCTT 59.613 33.333 0.00 0.00 40.88 2.52
2419 2955 6.872020 TCGGTCTCGATTGTAATTTTCTTTCT 59.128 34.615 0.00 0.00 40.88 2.52
2420 2956 7.057149 TCGGTCTCGATTGTAATTTTCTTTC 57.943 36.000 0.00 0.00 40.88 2.62
2421 2957 7.386848 TCTTCGGTCTCGATTGTAATTTTCTTT 59.613 33.333 0.00 0.00 45.51 2.52
2422 2958 6.872020 TCTTCGGTCTCGATTGTAATTTTCTT 59.128 34.615 0.00 0.00 45.51 2.52
2423 2959 6.395629 TCTTCGGTCTCGATTGTAATTTTCT 58.604 36.000 0.00 0.00 45.51 2.52
2424 2960 6.642683 TCTTCGGTCTCGATTGTAATTTTC 57.357 37.500 0.00 0.00 45.51 2.29
2425 2961 7.201617 GGATTCTTCGGTCTCGATTGTAATTTT 60.202 37.037 0.00 0.00 45.51 1.82
2426 2962 6.258068 GGATTCTTCGGTCTCGATTGTAATTT 59.742 38.462 0.00 0.00 45.51 1.82
2427 2963 5.753921 GGATTCTTCGGTCTCGATTGTAATT 59.246 40.000 0.00 0.00 45.51 1.40
2428 2964 5.069251 AGGATTCTTCGGTCTCGATTGTAAT 59.931 40.000 0.00 0.00 45.51 1.89
2429 2965 4.401519 AGGATTCTTCGGTCTCGATTGTAA 59.598 41.667 0.00 0.00 45.51 2.41
2430 2966 3.952323 AGGATTCTTCGGTCTCGATTGTA 59.048 43.478 0.00 0.00 45.51 2.41
2431 2967 2.761208 AGGATTCTTCGGTCTCGATTGT 59.239 45.455 0.00 0.00 45.51 2.71
2432 2968 3.067461 AGAGGATTCTTCGGTCTCGATTG 59.933 47.826 0.00 0.00 45.51 2.67
2433 2969 3.292460 AGAGGATTCTTCGGTCTCGATT 58.708 45.455 0.00 0.00 45.51 3.34
2434 2970 2.882137 GAGAGGATTCTTCGGTCTCGAT 59.118 50.000 0.00 0.00 45.51 3.59
2435 2971 2.290464 GAGAGGATTCTTCGGTCTCGA 58.710 52.381 0.00 0.00 44.44 4.04
2436 2972 2.017782 TGAGAGGATTCTTCGGTCTCG 58.982 52.381 0.00 0.00 36.27 4.04
2437 2973 2.223711 GCTGAGAGGATTCTTCGGTCTC 60.224 54.545 0.00 0.00 35.03 3.36
2438 2974 1.754226 GCTGAGAGGATTCTTCGGTCT 59.246 52.381 0.00 0.00 32.53 3.85
2439 2975 1.754226 AGCTGAGAGGATTCTTCGGTC 59.246 52.381 0.00 0.00 32.53 4.79
2440 2976 1.859302 AGCTGAGAGGATTCTTCGGT 58.141 50.000 0.00 0.00 32.53 4.69
2441 2977 2.167281 TCAAGCTGAGAGGATTCTTCGG 59.833 50.000 0.00 0.00 32.53 4.30
2442 2978 3.186119 GTCAAGCTGAGAGGATTCTTCG 58.814 50.000 0.00 0.00 32.53 3.79
2443 2979 4.199432 TGTCAAGCTGAGAGGATTCTTC 57.801 45.455 0.00 0.00 32.53 2.87
2444 2980 4.224594 TGATGTCAAGCTGAGAGGATTCTT 59.775 41.667 0.00 0.00 32.53 2.52
2445 2981 3.773667 TGATGTCAAGCTGAGAGGATTCT 59.226 43.478 0.00 0.00 36.01 2.40
2446 2982 4.134379 TGATGTCAAGCTGAGAGGATTC 57.866 45.455 0.00 0.00 0.00 2.52
2447 2983 4.260170 GTTGATGTCAAGCTGAGAGGATT 58.740 43.478 0.00 0.00 36.39 3.01
2448 2984 3.678252 CGTTGATGTCAAGCTGAGAGGAT 60.678 47.826 0.00 0.00 36.39 3.24
2449 2985 2.353109 CGTTGATGTCAAGCTGAGAGGA 60.353 50.000 0.00 0.00 36.39 3.71
2450 2986 1.998315 CGTTGATGTCAAGCTGAGAGG 59.002 52.381 0.00 0.00 36.39 3.69
2451 2987 2.665537 GACGTTGATGTCAAGCTGAGAG 59.334 50.000 0.00 0.00 38.75 3.20
2452 2988 2.610479 GGACGTTGATGTCAAGCTGAGA 60.610 50.000 5.77 0.00 40.72 3.27
2453 2989 1.728971 GGACGTTGATGTCAAGCTGAG 59.271 52.381 5.77 0.00 40.72 3.35
2454 2990 1.795768 GGACGTTGATGTCAAGCTGA 58.204 50.000 5.77 0.00 40.72 4.26
2455 2991 0.439985 CGGACGTTGATGTCAAGCTG 59.560 55.000 5.77 0.00 40.72 4.24
2456 2992 0.033504 ACGGACGTTGATGTCAAGCT 59.966 50.000 5.77 0.00 40.72 3.74
2457 2993 0.438830 GACGGACGTTGATGTCAAGC 59.561 55.000 0.00 0.00 40.72 4.01
2458 2994 1.455786 GTGACGGACGTTGATGTCAAG 59.544 52.381 12.55 2.10 42.43 3.02
2459 2995 1.067974 AGTGACGGACGTTGATGTCAA 59.932 47.619 12.55 0.00 42.43 3.18
2460 2996 0.671796 AGTGACGGACGTTGATGTCA 59.328 50.000 0.00 8.43 40.72 3.58
2461 2997 1.455786 CAAGTGACGGACGTTGATGTC 59.544 52.381 0.00 0.00 38.17 3.06
2462 2998 1.202486 ACAAGTGACGGACGTTGATGT 60.202 47.619 0.00 0.27 0.00 3.06
2463 2999 1.455786 GACAAGTGACGGACGTTGATG 59.544 52.381 0.00 0.00 0.00 3.07
2464 3000 1.340248 AGACAAGTGACGGACGTTGAT 59.660 47.619 0.00 0.00 0.00 2.57
2465 3001 0.742505 AGACAAGTGACGGACGTTGA 59.257 50.000 0.00 0.00 0.00 3.18
2466 3002 2.410785 TAGACAAGTGACGGACGTTG 57.589 50.000 0.00 0.00 0.00 4.10
2467 3003 2.352421 CCATAGACAAGTGACGGACGTT 60.352 50.000 0.00 0.00 0.00 3.99
2468 3004 1.201647 CCATAGACAAGTGACGGACGT 59.798 52.381 0.00 0.00 0.00 4.34
2469 3005 1.909376 CCATAGACAAGTGACGGACG 58.091 55.000 0.00 0.00 0.00 4.79
2470 3006 1.641577 GCCATAGACAAGTGACGGAC 58.358 55.000 0.00 0.00 0.00 4.79
2471 3007 0.172578 CGCCATAGACAAGTGACGGA 59.827 55.000 0.00 0.00 0.00 4.69
2472 3008 1.421410 GCGCCATAGACAAGTGACGG 61.421 60.000 0.00 0.00 0.00 4.79
2473 3009 1.421410 GGCGCCATAGACAAGTGACG 61.421 60.000 24.80 0.00 0.00 4.35
2474 3010 0.391130 TGGCGCCATAGACAAGTGAC 60.391 55.000 29.03 0.00 0.00 3.67
2475 3011 0.391130 GTGGCGCCATAGACAAGTGA 60.391 55.000 35.23 0.19 0.00 3.41
2476 3012 0.391661 AGTGGCGCCATAGACAAGTG 60.392 55.000 35.23 0.00 0.00 3.16
2477 3013 1.137086 CTAGTGGCGCCATAGACAAGT 59.863 52.381 35.23 13.13 0.00 3.16
2478 3014 1.409064 TCTAGTGGCGCCATAGACAAG 59.591 52.381 35.23 21.65 0.00 3.16
2479 3015 1.409064 CTCTAGTGGCGCCATAGACAA 59.591 52.381 35.23 15.17 0.00 3.18
2480 3016 1.032794 CTCTAGTGGCGCCATAGACA 58.967 55.000 35.23 17.06 0.00 3.41
2481 3017 0.319125 GCTCTAGTGGCGCCATAGAC 60.319 60.000 35.23 24.29 0.00 2.59
2482 3018 0.755327 TGCTCTAGTGGCGCCATAGA 60.755 55.000 35.23 31.80 0.00 1.98
2483 3019 0.104855 TTGCTCTAGTGGCGCCATAG 59.895 55.000 35.23 29.82 0.00 2.23
2484 3020 0.179084 GTTGCTCTAGTGGCGCCATA 60.179 55.000 35.23 22.91 0.00 2.74
2485 3021 1.450312 GTTGCTCTAGTGGCGCCAT 60.450 57.895 35.23 23.03 0.00 4.40
2486 3022 2.047274 GTTGCTCTAGTGGCGCCA 60.047 61.111 29.03 29.03 0.00 5.69
2487 3023 2.820037 GGTTGCTCTAGTGGCGCC 60.820 66.667 22.73 22.73 0.00 6.53
2488 3024 2.047274 TGGTTGCTCTAGTGGCGC 60.047 61.111 0.00 0.00 0.00 6.53
2489 3025 1.741770 GGTGGTTGCTCTAGTGGCG 60.742 63.158 0.00 0.00 0.00 5.69
2490 3026 0.250727 TTGGTGGTTGCTCTAGTGGC 60.251 55.000 4.07 4.07 0.00 5.01
2491 3027 2.270352 TTTGGTGGTTGCTCTAGTGG 57.730 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.