Multiple sequence alignment - TraesCS5D01G247100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G247100 chr5D 100.000 3265 0 0 1 3265 354743620 354740356 0.000000e+00 6030.0
1 TraesCS5D01G247100 chr5D 97.656 128 3 0 2371 2498 364050414 364050541 1.530000e-53 220.0
2 TraesCS5D01G247100 chr5D 81.448 221 28 9 1 211 292726243 292726026 5.600000e-38 169.0
3 TraesCS5D01G247100 chr5D 78.832 274 38 12 2652 2914 532078468 532078204 2.020000e-37 167.0
4 TraesCS5D01G247100 chr5B 86.704 1805 98 69 605 2366 419519294 419517589 0.000000e+00 1873.0
5 TraesCS5D01G247100 chr5B 85.623 779 80 13 2497 3265 419517593 419516837 0.000000e+00 789.0
6 TraesCS5D01G247100 chr5B 92.118 203 13 3 215 415 419519612 419519411 1.920000e-72 283.0
7 TraesCS5D01G247100 chr5B 95.420 131 6 0 2371 2501 327750365 327750235 3.300000e-50 209.0
8 TraesCS5D01G247100 chr5B 85.897 78 1 1 472 549 419519420 419519353 1.260000e-09 75.0
9 TraesCS5D01G247100 chr5A 88.472 1067 61 36 783 1826 456745624 456744597 0.000000e+00 1232.0
10 TraesCS5D01G247100 chr5A 85.275 781 78 18 2498 3265 456744113 456743357 0.000000e+00 771.0
11 TraesCS5D01G247100 chr5A 89.315 496 27 10 1892 2366 456744600 456744110 1.680000e-167 599.0
12 TraesCS5D01G247100 chr5A 91.518 224 5 4 1 213 476063215 476062995 2.460000e-76 296.0
13 TraesCS5D01G247100 chr5A 75.540 556 92 30 2727 3265 485390677 485390149 1.960000e-57 233.0
14 TraesCS5D01G247100 chr5A 81.404 285 41 10 2981 3262 490846633 490846908 4.240000e-54 222.0
15 TraesCS5D01G247100 chr5A 86.538 104 7 3 212 308 456745726 456745623 1.240000e-19 108.0
16 TraesCS5D01G247100 chr3B 88.710 806 54 18 1265 2051 34532273 34531486 0.000000e+00 950.0
17 TraesCS5D01G247100 chr3B 88.433 804 61 17 1265 2051 34478161 34477373 0.000000e+00 941.0
18 TraesCS5D01G247100 chr3B 87.262 840 67 21 1235 2051 764673610 764672788 0.000000e+00 922.0
19 TraesCS5D01G247100 chr3B 87.687 804 67 16 1265 2051 468136650 468135862 0.000000e+00 907.0
20 TraesCS5D01G247100 chr3B 84.283 579 57 19 1225 1784 35629556 35630119 4.800000e-148 534.0
21 TraesCS5D01G247100 chr3B 84.314 561 54 20 1225 1766 35562892 35563437 4.830000e-143 518.0
22 TraesCS5D01G247100 chr3B 93.249 237 14 2 1816 2051 35630398 35630633 6.700000e-92 348.0
23 TraesCS5D01G247100 chr3B 94.853 136 6 1 2371 2505 630367784 630367919 9.180000e-51 211.0
24 TraesCS5D01G247100 chr3B 82.906 234 15 4 1 211 485533407 485533176 1.550000e-43 187.0
25 TraesCS5D01G247100 chr2A 88.184 804 61 18 1265 2051 306424575 306423789 0.000000e+00 928.0
26 TraesCS5D01G247100 chr2A 77.651 613 92 28 2675 3264 48798737 48798147 6.750000e-87 331.0
27 TraesCS5D01G247100 chr2A 97.436 117 2 1 96 211 23468885 23469001 7.150000e-47 198.0
28 TraesCS5D01G247100 chr2A 94.792 96 3 1 1 96 23468752 23468845 7.300000e-32 148.0
29 TraesCS5D01G247100 chr1B 86.152 881 73 25 1192 2051 566256774 566257626 0.000000e+00 905.0
30 TraesCS5D01G247100 chr2B 86.098 856 68 26 1222 2051 277274012 277274842 0.000000e+00 874.0
31 TraesCS5D01G247100 chr2B 96.875 96 1 1 1 96 232834914 232834821 3.370000e-35 159.0
32 TraesCS5D01G247100 chr7D 95.872 218 2 2 1 211 449768425 449768208 2.410000e-91 346.0
33 TraesCS5D01G247100 chr7D 77.273 462 67 22 2697 3128 311862585 311863038 1.510000e-58 237.0
34 TraesCS5D01G247100 chr3A 80.916 393 67 7 2871 3263 363029816 363030200 1.470000e-78 303.0
35 TraesCS5D01G247100 chr7A 79.891 368 61 12 2871 3233 489358083 489357724 1.160000e-64 257.0
36 TraesCS5D01G247100 chrUn 76.820 522 78 30 2714 3210 45886245 45885742 1.500000e-63 254.0
37 TraesCS5D01G247100 chrUn 97.656 128 3 0 2371 2498 98153915 98153788 1.530000e-53 220.0
38 TraesCS5D01G247100 chrUn 77.654 179 19 10 2688 2855 353428139 353428307 4.490000e-14 89.8
39 TraesCS5D01G247100 chr4B 83.214 280 39 7 2953 3231 506132351 506132079 1.950000e-62 250.0
40 TraesCS5D01G247100 chr4D 97.778 135 2 1 2371 2505 301533914 301534047 7.050000e-57 231.0
41 TraesCS5D01G247100 chr4D 96.875 128 4 0 2371 2498 310709891 310709764 7.100000e-52 215.0
42 TraesCS5D01G247100 chr4D 96.875 128 4 0 2371 2498 391290424 391290297 7.100000e-52 215.0
43 TraesCS5D01G247100 chr3D 86.512 215 24 5 1 211 134640743 134640956 7.050000e-57 231.0
44 TraesCS5D01G247100 chr3D 94.915 118 3 3 96 211 14355541 14355425 7.200000e-42 182.0
45 TraesCS5D01G247100 chr3D 94.792 96 3 1 1 96 14355686 14355593 7.300000e-32 148.0
46 TraesCS5D01G247100 chr1D 82.772 267 38 5 2998 3264 153718834 153718576 7.050000e-57 231.0
47 TraesCS5D01G247100 chr1D 85.124 242 5 11 1 211 417746481 417746240 5.480000e-53 219.0
48 TraesCS5D01G247100 chr1D 77.576 165 22 10 2697 2857 493815344 493815497 5.800000e-13 86.1
49 TraesCS5D01G247100 chr2D 96.923 130 4 0 2371 2500 242564004 242564133 5.480000e-53 219.0
50 TraesCS5D01G247100 chr2D 85.088 228 17 6 1 211 573650613 573650840 1.970000e-52 217.0
51 TraesCS5D01G247100 chr4A 92.958 142 8 2 2364 2504 327753307 327753447 4.270000e-49 206.0
52 TraesCS5D01G247100 chr4A 94.872 117 5 1 96 211 491455866 491455750 7.200000e-42 182.0
53 TraesCS5D01G247100 chr4A 86.471 170 10 4 1474 1643 632369779 632369935 1.200000e-39 174.0
54 TraesCS5D01G247100 chr4A 94.792 96 3 1 1 96 491455993 491455900 7.300000e-32 148.0
55 TraesCS5D01G247100 chr6B 73.387 372 52 23 2653 2996 485115051 485115403 9.640000e-16 95.3
56 TraesCS5D01G247100 chr6B 77.654 179 19 10 2688 2855 707422100 707422268 4.490000e-14 89.8
57 TraesCS5D01G247100 chr6B 77.654 179 19 10 2688 2855 707761791 707761959 4.490000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G247100 chr5D 354740356 354743620 3264 True 6030.0 6030 100.0000 1 3265 1 chr5D.!!$R2 3264
1 TraesCS5D01G247100 chr5B 419516837 419519612 2775 True 755.0 1873 87.5855 215 3265 4 chr5B.!!$R2 3050
2 TraesCS5D01G247100 chr5A 456743357 456745726 2369 True 677.5 1232 87.4000 212 3265 4 chr5A.!!$R3 3053
3 TraesCS5D01G247100 chr5A 485390149 485390677 528 True 233.0 233 75.5400 2727 3265 1 chr5A.!!$R2 538
4 TraesCS5D01G247100 chr3B 34531486 34532273 787 True 950.0 950 88.7100 1265 2051 1 chr3B.!!$R2 786
5 TraesCS5D01G247100 chr3B 34477373 34478161 788 True 941.0 941 88.4330 1265 2051 1 chr3B.!!$R1 786
6 TraesCS5D01G247100 chr3B 764672788 764673610 822 True 922.0 922 87.2620 1235 2051 1 chr3B.!!$R5 816
7 TraesCS5D01G247100 chr3B 468135862 468136650 788 True 907.0 907 87.6870 1265 2051 1 chr3B.!!$R3 786
8 TraesCS5D01G247100 chr3B 35562892 35563437 545 False 518.0 518 84.3140 1225 1766 1 chr3B.!!$F1 541
9 TraesCS5D01G247100 chr3B 35629556 35630633 1077 False 441.0 534 88.7660 1225 2051 2 chr3B.!!$F3 826
10 TraesCS5D01G247100 chr2A 306423789 306424575 786 True 928.0 928 88.1840 1265 2051 1 chr2A.!!$R2 786
11 TraesCS5D01G247100 chr2A 48798147 48798737 590 True 331.0 331 77.6510 2675 3264 1 chr2A.!!$R1 589
12 TraesCS5D01G247100 chr1B 566256774 566257626 852 False 905.0 905 86.1520 1192 2051 1 chr1B.!!$F1 859
13 TraesCS5D01G247100 chr2B 277274012 277274842 830 False 874.0 874 86.0980 1222 2051 1 chr2B.!!$F1 829
14 TraesCS5D01G247100 chrUn 45885742 45886245 503 True 254.0 254 76.8200 2714 3210 1 chrUn.!!$R1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 780 0.030705 CCCTTCCCCCTCTCATCTCA 60.031 60.0 0.0 0.0 0.0 3.27 F
1223 1653 0.033208 CAGTCTCCAGCTCTCCCTCT 60.033 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 2084 0.301687 CTGTGAGTGTGCGTGTGTTC 59.698 55.0 0.0 0.00 0.00 3.18 R
2264 3011 0.462759 GGCAAGCTAGCTACAGGTGG 60.463 60.0 19.7 3.19 34.17 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.832248 ACTTTGCATCGAGGAATGTTAGA 58.168 39.130 0.00 0.00 33.17 2.10
23 24 5.245531 ACTTTGCATCGAGGAATGTTAGAA 58.754 37.500 0.00 0.00 33.17 2.10
24 25 5.352569 ACTTTGCATCGAGGAATGTTAGAAG 59.647 40.000 0.00 0.00 33.17 2.85
25 26 4.736126 TGCATCGAGGAATGTTAGAAGA 57.264 40.909 0.00 0.00 0.00 2.87
26 27 4.433615 TGCATCGAGGAATGTTAGAAGAC 58.566 43.478 0.00 0.00 0.00 3.01
27 28 4.081697 TGCATCGAGGAATGTTAGAAGACA 60.082 41.667 0.00 0.00 0.00 3.41
28 29 5.053145 GCATCGAGGAATGTTAGAAGACAT 58.947 41.667 0.00 0.00 41.83 3.06
81 82 7.391148 ACGCATACAGATTTTGGATTTAAGT 57.609 32.000 0.00 0.00 0.00 2.24
82 83 7.250569 ACGCATACAGATTTTGGATTTAAGTG 58.749 34.615 0.00 0.00 0.00 3.16
83 84 7.094377 ACGCATACAGATTTTGGATTTAAGTGT 60.094 33.333 0.00 0.00 0.00 3.55
84 85 7.754924 CGCATACAGATTTTGGATTTAAGTGTT 59.245 33.333 0.00 0.00 0.00 3.32
89 90 9.349713 ACAGATTTTGGATTTAAGTGTTACTGA 57.650 29.630 0.00 0.00 0.00 3.41
104 105 8.479313 AGTGTTACTGATTATATGTGTGTGTG 57.521 34.615 0.00 0.00 0.00 3.82
105 106 8.094548 AGTGTTACTGATTATATGTGTGTGTGT 58.905 33.333 0.00 0.00 0.00 3.72
106 107 8.717821 GTGTTACTGATTATATGTGTGTGTGTT 58.282 33.333 0.00 0.00 0.00 3.32
107 108 9.278978 TGTTACTGATTATATGTGTGTGTGTTT 57.721 29.630 0.00 0.00 0.00 2.83
116 117 9.938670 TTATATGTGTGTGTGTTTTTAGACAAC 57.061 29.630 0.00 0.00 0.00 3.32
117 118 5.950758 TGTGTGTGTGTTTTTAGACAACT 57.049 34.783 0.00 0.00 0.00 3.16
118 119 7.618502 ATGTGTGTGTGTTTTTAGACAACTA 57.381 32.000 0.00 0.00 0.00 2.24
119 120 7.618502 TGTGTGTGTGTTTTTAGACAACTAT 57.381 32.000 0.00 0.00 0.00 2.12
120 121 8.719560 TGTGTGTGTGTTTTTAGACAACTATA 57.280 30.769 0.00 0.00 0.00 1.31
121 122 9.332502 TGTGTGTGTGTTTTTAGACAACTATAT 57.667 29.630 0.00 0.00 0.00 0.86
146 147 4.804608 TGCACACGTATATTACAATGGC 57.195 40.909 0.00 0.00 0.00 4.40
147 148 4.447290 TGCACACGTATATTACAATGGCT 58.553 39.130 0.00 0.00 0.00 4.75
148 149 4.509970 TGCACACGTATATTACAATGGCTC 59.490 41.667 0.00 0.00 0.00 4.70
149 150 4.376008 GCACACGTATATTACAATGGCTCG 60.376 45.833 0.00 0.00 0.00 5.03
150 151 4.743151 CACACGTATATTACAATGGCTCGT 59.257 41.667 0.00 0.00 0.00 4.18
151 152 5.916320 CACACGTATATTACAATGGCTCGTA 59.084 40.000 0.00 0.00 0.00 3.43
152 153 6.584942 CACACGTATATTACAATGGCTCGTAT 59.415 38.462 0.00 0.00 0.00 3.06
153 154 7.751793 CACACGTATATTACAATGGCTCGTATA 59.248 37.037 0.00 0.00 0.00 1.47
154 155 8.464404 ACACGTATATTACAATGGCTCGTATAT 58.536 33.333 0.00 0.00 0.00 0.86
155 156 9.297586 CACGTATATTACAATGGCTCGTATATT 57.702 33.333 0.00 0.00 0.00 1.28
160 161 3.939066 ACAATGGCTCGTATATTAGGGC 58.061 45.455 0.00 0.00 0.00 5.19
161 162 3.270877 CAATGGCTCGTATATTAGGGCC 58.729 50.000 12.58 12.58 39.93 5.80
162 163 1.272807 TGGCTCGTATATTAGGGCCC 58.727 55.000 16.46 16.46 38.89 5.80
163 164 0.540454 GGCTCGTATATTAGGGCCCC 59.460 60.000 21.43 0.00 34.19 5.80
164 165 0.540454 GCTCGTATATTAGGGCCCCC 59.460 60.000 21.43 0.00 0.00 5.40
165 166 1.946984 CTCGTATATTAGGGCCCCCA 58.053 55.000 21.43 5.29 38.92 4.96
166 167 2.262637 CTCGTATATTAGGGCCCCCAA 58.737 52.381 21.43 14.23 38.92 4.12
167 168 2.844348 CTCGTATATTAGGGCCCCCAAT 59.156 50.000 21.43 20.63 38.92 3.16
168 169 3.261962 TCGTATATTAGGGCCCCCAATT 58.738 45.455 21.43 11.43 38.92 2.32
169 170 3.658705 TCGTATATTAGGGCCCCCAATTT 59.341 43.478 21.43 15.60 38.92 1.82
170 171 4.106663 TCGTATATTAGGGCCCCCAATTTT 59.893 41.667 21.43 11.78 38.92 1.82
171 172 5.312708 TCGTATATTAGGGCCCCCAATTTTA 59.687 40.000 21.43 10.84 38.92 1.52
172 173 6.011481 CGTATATTAGGGCCCCCAATTTTAA 58.989 40.000 21.43 9.21 38.92 1.52
173 174 6.152154 CGTATATTAGGGCCCCCAATTTTAAG 59.848 42.308 21.43 11.67 38.92 1.85
174 175 3.856747 TTAGGGCCCCCAATTTTAAGT 57.143 42.857 21.43 0.00 38.92 2.24
175 176 2.733298 AGGGCCCCCAATTTTAAGTT 57.267 45.000 21.43 0.00 38.92 2.66
176 177 2.546899 AGGGCCCCCAATTTTAAGTTC 58.453 47.619 21.43 0.00 38.92 3.01
177 178 1.206132 GGGCCCCCAATTTTAAGTTCG 59.794 52.381 12.23 0.00 35.81 3.95
178 179 1.404986 GGCCCCCAATTTTAAGTTCGC 60.405 52.381 0.00 0.00 0.00 4.70
179 180 1.404986 GCCCCCAATTTTAAGTTCGCC 60.405 52.381 0.00 0.00 0.00 5.54
180 181 1.206132 CCCCCAATTTTAAGTTCGCCC 59.794 52.381 0.00 0.00 0.00 6.13
181 182 1.206132 CCCCAATTTTAAGTTCGCCCC 59.794 52.381 0.00 0.00 0.00 5.80
182 183 1.135228 CCCAATTTTAAGTTCGCCCCG 60.135 52.381 0.00 0.00 0.00 5.73
183 184 1.135228 CCAATTTTAAGTTCGCCCCGG 60.135 52.381 0.00 0.00 0.00 5.73
184 185 1.135228 CAATTTTAAGTTCGCCCCGGG 60.135 52.381 15.80 15.80 0.00 5.73
185 186 1.317431 ATTTTAAGTTCGCCCCGGGC 61.317 55.000 19.64 19.64 46.75 6.13
199 200 2.193248 GGGCCCCCGAAATCTCAG 59.807 66.667 12.23 0.00 0.00 3.35
200 201 2.193248 GGCCCCCGAAATCTCAGG 59.807 66.667 0.00 0.00 0.00 3.86
201 202 2.375345 GGCCCCCGAAATCTCAGGA 61.375 63.158 0.00 0.00 0.00 3.86
202 203 1.153147 GCCCCCGAAATCTCAGGAC 60.153 63.158 0.00 0.00 0.00 3.85
203 204 1.527370 CCCCCGAAATCTCAGGACC 59.473 63.158 0.00 0.00 0.00 4.46
204 205 1.144057 CCCCGAAATCTCAGGACCG 59.856 63.158 0.00 0.00 0.00 4.79
205 206 1.144057 CCCGAAATCTCAGGACCGG 59.856 63.158 0.00 0.00 34.41 5.28
206 207 1.521681 CCGAAATCTCAGGACCGGC 60.522 63.158 0.00 0.00 0.00 6.13
207 208 1.521681 CGAAATCTCAGGACCGGCC 60.522 63.158 0.00 3.58 0.00 6.13
208 209 1.153147 GAAATCTCAGGACCGGCCC 60.153 63.158 0.00 0.00 37.37 5.80
209 210 1.616628 AAATCTCAGGACCGGCCCT 60.617 57.895 2.07 2.07 37.37 5.19
247 253 3.313012 TGTAATGTCGTCCTGTCCTTG 57.687 47.619 0.00 0.00 0.00 3.61
266 272 1.409427 TGGCACGGGTAAAAACAAAGG 59.591 47.619 0.00 0.00 0.00 3.11
318 326 2.657237 CCAGGTCGGTCACAGGAC 59.343 66.667 0.00 0.00 43.55 3.85
319 327 1.908793 CCAGGTCGGTCACAGGACT 60.909 63.158 0.00 0.00 43.77 3.85
320 328 1.587054 CAGGTCGGTCACAGGACTC 59.413 63.158 0.00 0.00 43.77 3.36
321 329 1.972223 AGGTCGGTCACAGGACTCG 60.972 63.158 0.00 0.00 43.77 4.18
322 330 2.567049 GTCGGTCACAGGACTCGG 59.433 66.667 0.00 0.00 43.77 4.63
323 331 3.371063 TCGGTCACAGGACTCGGC 61.371 66.667 0.00 0.00 43.77 5.54
324 332 4.778415 CGGTCACAGGACTCGGCG 62.778 72.222 0.00 0.00 43.77 6.46
325 333 4.436998 GGTCACAGGACTCGGCGG 62.437 72.222 7.21 0.00 43.77 6.13
328 336 4.379243 CACAGGACTCGGCGGCTT 62.379 66.667 7.21 0.00 0.00 4.35
329 337 4.379243 ACAGGACTCGGCGGCTTG 62.379 66.667 7.21 6.48 0.00 4.01
330 338 4.379243 CAGGACTCGGCGGCTTGT 62.379 66.667 7.21 5.33 0.00 3.16
331 339 4.070552 AGGACTCGGCGGCTTGTC 62.071 66.667 18.19 18.19 0.00 3.18
341 349 3.574780 GGCTTGTCCGTAGCAACC 58.425 61.111 0.00 0.00 40.42 3.77
342 350 2.388232 GGCTTGTCCGTAGCAACCG 61.388 63.158 0.00 0.00 40.42 4.44
343 351 3.023591 GCTTGTCCGTAGCAACCGC 62.024 63.158 0.00 0.00 38.51 5.68
344 352 2.357760 TTGTCCGTAGCAACCGCC 60.358 61.111 0.00 0.00 39.83 6.13
345 353 3.166490 TTGTCCGTAGCAACCGCCA 62.166 57.895 0.00 0.00 39.83 5.69
346 354 2.357760 GTCCGTAGCAACCGCCAA 60.358 61.111 0.00 0.00 39.83 4.52
347 355 2.357760 TCCGTAGCAACCGCCAAC 60.358 61.111 0.00 0.00 39.83 3.77
348 356 3.428282 CCGTAGCAACCGCCAACC 61.428 66.667 0.00 0.00 39.83 3.77
349 357 3.784412 CGTAGCAACCGCCAACCG 61.784 66.667 0.00 0.00 39.83 4.44
367 375 4.626081 GTCACCCGTGCCACAGCT 62.626 66.667 0.00 0.00 40.80 4.24
368 376 2.920384 TCACCCGTGCCACAGCTA 60.920 61.111 0.00 0.00 40.80 3.32
369 377 2.742372 CACCCGTGCCACAGCTAC 60.742 66.667 0.00 0.00 40.80 3.58
370 378 3.238497 ACCCGTGCCACAGCTACA 61.238 61.111 0.00 0.00 40.80 2.74
371 379 2.742372 CCCGTGCCACAGCTACAC 60.742 66.667 0.00 0.00 40.80 2.90
372 380 2.742372 CCGTGCCACAGCTACACC 60.742 66.667 0.00 0.00 40.80 4.16
373 381 3.112075 CGTGCCACAGCTACACCG 61.112 66.667 0.00 0.00 40.80 4.94
374 382 2.742372 GTGCCACAGCTACACCGG 60.742 66.667 0.00 0.00 40.80 5.28
375 383 4.697756 TGCCACAGCTACACCGGC 62.698 66.667 0.00 0.00 43.28 6.13
376 384 4.697756 GCCACAGCTACACCGGCA 62.698 66.667 0.00 0.00 42.50 5.69
377 385 2.742372 CCACAGCTACACCGGCAC 60.742 66.667 0.00 0.00 0.00 5.01
392 400 2.004583 GGCACGTGACAATAGTAGCA 57.995 50.000 22.23 0.00 0.00 3.49
393 401 1.927174 GGCACGTGACAATAGTAGCAG 59.073 52.381 22.23 0.00 0.00 4.24
394 402 1.324736 GCACGTGACAATAGTAGCAGC 59.675 52.381 22.23 0.00 0.00 5.25
395 403 2.606108 CACGTGACAATAGTAGCAGCA 58.394 47.619 10.90 0.00 0.00 4.41
396 404 3.190079 CACGTGACAATAGTAGCAGCAT 58.810 45.455 10.90 0.00 0.00 3.79
397 405 4.359706 CACGTGACAATAGTAGCAGCATA 58.640 43.478 10.90 0.00 0.00 3.14
398 406 4.984785 CACGTGACAATAGTAGCAGCATAT 59.015 41.667 10.90 0.00 0.00 1.78
399 407 4.984785 ACGTGACAATAGTAGCAGCATATG 59.015 41.667 0.00 0.00 0.00 1.78
408 416 3.337619 CAGCATATGCCGCTCACC 58.662 61.111 23.96 0.00 43.38 4.02
409 417 2.111878 AGCATATGCCGCTCACCC 59.888 61.111 23.96 0.00 43.38 4.61
410 418 3.349006 GCATATGCCGCTCACCCG 61.349 66.667 17.26 0.00 34.31 5.28
431 439 3.246112 CCGAGACCCACCCACCAA 61.246 66.667 0.00 0.00 0.00 3.67
432 440 2.032071 CGAGACCCACCCACCAAC 59.968 66.667 0.00 0.00 0.00 3.77
433 441 2.434774 GAGACCCACCCACCAACC 59.565 66.667 0.00 0.00 0.00 3.77
434 442 3.546714 GAGACCCACCCACCAACCG 62.547 68.421 0.00 0.00 0.00 4.44
454 462 3.307906 CCACACGGGAAGACGGGA 61.308 66.667 0.00 0.00 40.35 5.14
455 463 2.048503 CACACGGGAAGACGGGAC 60.049 66.667 0.00 0.00 40.35 4.46
468 476 3.576356 GGGACGACGGCATGCATG 61.576 66.667 22.70 22.70 0.00 4.06
486 494 2.941013 CAGCTCGCGCGCAATTTC 60.941 61.111 32.61 14.39 42.32 2.17
487 495 4.166011 AGCTCGCGCGCAATTTCC 62.166 61.111 32.61 12.22 42.32 3.13
489 497 4.868900 CTCGCGCGCAATTTCCCG 62.869 66.667 32.61 12.21 0.00 5.14
497 505 3.015799 GCAATTTCCCGCGAAGAAC 57.984 52.632 8.23 0.00 0.00 3.01
498 506 0.456142 GCAATTTCCCGCGAAGAACC 60.456 55.000 8.23 0.00 0.00 3.62
499 507 0.170339 CAATTTCCCGCGAAGAACCC 59.830 55.000 8.23 0.00 0.00 4.11
500 508 0.963856 AATTTCCCGCGAAGAACCCC 60.964 55.000 8.23 0.00 0.00 4.95
501 509 3.887335 TTTCCCGCGAAGAACCCCG 62.887 63.158 8.23 0.00 0.00 5.73
551 559 3.589881 GACCCCAGCGCATGCATC 61.590 66.667 19.57 8.73 46.23 3.91
552 560 4.119363 ACCCCAGCGCATGCATCT 62.119 61.111 19.57 11.10 46.23 2.90
553 561 2.111669 CCCCAGCGCATGCATCTA 59.888 61.111 19.57 0.00 46.23 1.98
554 562 2.256591 CCCCAGCGCATGCATCTAC 61.257 63.158 19.57 0.88 46.23 2.59
555 563 2.256591 CCCAGCGCATGCATCTACC 61.257 63.158 19.57 0.00 46.23 3.18
556 564 1.524393 CCAGCGCATGCATCTACCA 60.524 57.895 19.57 0.00 46.23 3.25
557 565 1.645455 CAGCGCATGCATCTACCAC 59.355 57.895 19.57 0.00 46.23 4.16
558 566 1.884464 AGCGCATGCATCTACCACG 60.884 57.895 19.57 0.00 46.23 4.94
559 567 2.885676 GCGCATGCATCTACCACGG 61.886 63.158 19.57 0.00 42.15 4.94
560 568 1.521457 CGCATGCATCTACCACGGT 60.521 57.895 19.57 0.00 0.00 4.83
561 569 0.249280 CGCATGCATCTACCACGGTA 60.249 55.000 19.57 0.00 0.00 4.02
562 570 1.502231 GCATGCATCTACCACGGTAG 58.498 55.000 14.21 15.88 46.82 3.18
574 582 4.684484 ACCACGGTAGAAGAAAGAAAGT 57.316 40.909 0.00 0.00 0.00 2.66
575 583 4.377897 ACCACGGTAGAAGAAAGAAAGTG 58.622 43.478 0.00 0.00 0.00 3.16
576 584 3.186613 CCACGGTAGAAGAAAGAAAGTGC 59.813 47.826 0.00 0.00 0.00 4.40
577 585 3.186613 CACGGTAGAAGAAAGAAAGTGCC 59.813 47.826 0.00 0.00 0.00 5.01
578 586 2.742589 CGGTAGAAGAAAGAAAGTGCCC 59.257 50.000 0.00 0.00 0.00 5.36
579 587 3.557264 CGGTAGAAGAAAGAAAGTGCCCT 60.557 47.826 0.00 0.00 0.00 5.19
580 588 4.399219 GGTAGAAGAAAGAAAGTGCCCTT 58.601 43.478 0.00 0.00 0.00 3.95
581 589 4.456222 GGTAGAAGAAAGAAAGTGCCCTTC 59.544 45.833 0.00 0.00 0.00 3.46
582 590 3.491342 AGAAGAAAGAAAGTGCCCTTCC 58.509 45.455 0.00 0.00 32.70 3.46
583 591 2.294449 AGAAAGAAAGTGCCCTTCCC 57.706 50.000 0.00 0.00 0.00 3.97
584 592 1.499007 AGAAAGAAAGTGCCCTTCCCA 59.501 47.619 0.00 0.00 0.00 4.37
585 593 1.613925 GAAAGAAAGTGCCCTTCCCAC 59.386 52.381 0.00 0.00 0.00 4.61
586 594 0.853530 AAGAAAGTGCCCTTCCCACT 59.146 50.000 0.00 0.00 44.92 4.00
589 597 3.171348 AGTGCCCTTCCCACTTCC 58.829 61.111 0.00 0.00 40.45 3.46
590 598 1.774217 AGTGCCCTTCCCACTTCCA 60.774 57.895 0.00 0.00 40.45 3.53
591 599 1.603739 GTGCCCTTCCCACTTCCAC 60.604 63.158 0.00 0.00 0.00 4.02
592 600 2.081787 TGCCCTTCCCACTTCCACA 61.082 57.895 0.00 0.00 0.00 4.17
593 601 1.303643 GCCCTTCCCACTTCCACAG 60.304 63.158 0.00 0.00 0.00 3.66
594 602 2.069165 GCCCTTCCCACTTCCACAGT 62.069 60.000 0.00 0.00 35.35 3.55
595 603 0.478507 CCCTTCCCACTTCCACAGTT 59.521 55.000 0.00 0.00 30.92 3.16
596 604 1.545651 CCCTTCCCACTTCCACAGTTC 60.546 57.143 0.00 0.00 30.92 3.01
597 605 1.545651 CCTTCCCACTTCCACAGTTCC 60.546 57.143 0.00 0.00 30.92 3.62
598 606 0.476771 TTCCCACTTCCACAGTTCCC 59.523 55.000 0.00 0.00 30.92 3.97
599 607 1.074951 CCCACTTCCACAGTTCCCC 59.925 63.158 0.00 0.00 30.92 4.81
600 608 1.302511 CCACTTCCACAGTTCCCCG 60.303 63.158 0.00 0.00 30.92 5.73
601 609 1.450211 CACTTCCACAGTTCCCCGT 59.550 57.895 0.00 0.00 30.92 5.28
602 610 0.602905 CACTTCCACAGTTCCCCGTC 60.603 60.000 0.00 0.00 30.92 4.79
603 611 1.003718 CTTCCACAGTTCCCCGTCC 60.004 63.158 0.00 0.00 0.00 4.79
604 612 2.465055 CTTCCACAGTTCCCCGTCCC 62.465 65.000 0.00 0.00 0.00 4.46
605 613 4.388499 CCACAGTTCCCCGTCCCG 62.388 72.222 0.00 0.00 0.00 5.14
608 616 4.452733 CAGTTCCCCGTCCCGCTC 62.453 72.222 0.00 0.00 0.00 5.03
758 766 4.525949 GTACGCCCCGCTCCCTTC 62.526 72.222 0.00 0.00 0.00 3.46
765 773 4.806339 CCGCTCCCTTCCCCCTCT 62.806 72.222 0.00 0.00 0.00 3.69
766 774 3.157949 CGCTCCCTTCCCCCTCTC 61.158 72.222 0.00 0.00 0.00 3.20
767 775 2.041265 GCTCCCTTCCCCCTCTCA 59.959 66.667 0.00 0.00 0.00 3.27
768 776 1.385206 GCTCCCTTCCCCCTCTCAT 60.385 63.158 0.00 0.00 0.00 2.90
769 777 1.414866 GCTCCCTTCCCCCTCTCATC 61.415 65.000 0.00 0.00 0.00 2.92
770 778 0.267356 CTCCCTTCCCCCTCTCATCT 59.733 60.000 0.00 0.00 0.00 2.90
771 779 0.266152 TCCCTTCCCCCTCTCATCTC 59.734 60.000 0.00 0.00 0.00 2.75
772 780 0.030705 CCCTTCCCCCTCTCATCTCA 60.031 60.000 0.00 0.00 0.00 3.27
773 781 1.415716 CCCTTCCCCCTCTCATCTCAT 60.416 57.143 0.00 0.00 0.00 2.90
774 782 1.977129 CCTTCCCCCTCTCATCTCATC 59.023 57.143 0.00 0.00 0.00 2.92
775 783 2.427593 CCTTCCCCCTCTCATCTCATCT 60.428 54.545 0.00 0.00 0.00 2.90
776 784 2.692709 TCCCCCTCTCATCTCATCTC 57.307 55.000 0.00 0.00 0.00 2.75
777 785 1.148867 TCCCCCTCTCATCTCATCTCC 59.851 57.143 0.00 0.00 0.00 3.71
778 786 1.132913 CCCCCTCTCATCTCATCTCCA 60.133 57.143 0.00 0.00 0.00 3.86
779 787 2.250031 CCCCTCTCATCTCATCTCCAG 58.750 57.143 0.00 0.00 0.00 3.86
780 788 1.619827 CCCTCTCATCTCATCTCCAGC 59.380 57.143 0.00 0.00 0.00 4.85
781 789 2.600790 CCTCTCATCTCATCTCCAGCT 58.399 52.381 0.00 0.00 0.00 4.24
782 790 2.967201 CCTCTCATCTCATCTCCAGCTT 59.033 50.000 0.00 0.00 0.00 3.74
783 791 3.006110 CCTCTCATCTCATCTCCAGCTTC 59.994 52.174 0.00 0.00 0.00 3.86
784 792 2.964464 TCTCATCTCATCTCCAGCTTCC 59.036 50.000 0.00 0.00 0.00 3.46
785 793 2.967201 CTCATCTCATCTCCAGCTTCCT 59.033 50.000 0.00 0.00 0.00 3.36
786 794 2.964464 TCATCTCATCTCCAGCTTCCTC 59.036 50.000 0.00 0.00 0.00 3.71
791 799 2.117865 CATCTCCAGCTTCCTCTCCTT 58.882 52.381 0.00 0.00 0.00 3.36
792 1207 1.859302 TCTCCAGCTTCCTCTCCTTC 58.141 55.000 0.00 0.00 0.00 3.46
801 1216 2.642154 TCCTCTCCTTCCTAGCTACG 57.358 55.000 0.00 0.00 0.00 3.51
823 1240 4.504461 CGGTGAGTAGCTGCTGTTAATTAG 59.496 45.833 9.82 0.00 0.00 1.73
824 1241 4.811557 GGTGAGTAGCTGCTGTTAATTAGG 59.188 45.833 9.82 0.00 0.00 2.69
832 1249 6.807789 AGCTGCTGTTAATTAGGAGTAGTAC 58.192 40.000 0.00 0.00 36.18 2.73
833 1250 6.380274 AGCTGCTGTTAATTAGGAGTAGTACA 59.620 38.462 0.00 0.00 36.18 2.90
834 1251 6.697892 GCTGCTGTTAATTAGGAGTAGTACAG 59.302 42.308 2.52 8.28 36.18 2.74
835 1252 7.630944 GCTGCTGTTAATTAGGAGTAGTACAGT 60.631 40.741 2.52 0.00 36.18 3.55
836 1253 8.812513 TGCTGTTAATTAGGAGTAGTACAGTA 57.187 34.615 2.52 4.66 35.42 2.74
837 1254 8.900781 TGCTGTTAATTAGGAGTAGTACAGTAG 58.099 37.037 2.52 0.00 35.42 2.57
838 1255 8.901793 GCTGTTAATTAGGAGTAGTACAGTAGT 58.098 37.037 2.52 0.00 35.42 2.73
840 1257 9.964354 TGTTAATTAGGAGTAGTACAGTAGTCA 57.036 33.333 2.52 0.00 0.00 3.41
843 1260 8.508883 AATTAGGAGTAGTACAGTAGTCAGTG 57.491 38.462 2.52 0.00 0.00 3.66
844 1261 4.846040 AGGAGTAGTACAGTAGTCAGTGG 58.154 47.826 2.52 0.00 0.00 4.00
845 1262 4.289148 AGGAGTAGTACAGTAGTCAGTGGT 59.711 45.833 2.52 0.00 0.00 4.16
846 1263 5.486775 AGGAGTAGTACAGTAGTCAGTGGTA 59.513 44.000 2.52 0.00 0.00 3.25
850 1267 4.011023 AGTACAGTAGTCAGTGGTAGCTG 58.989 47.826 0.00 0.00 37.81 4.24
851 1268 2.171840 ACAGTAGTCAGTGGTAGCTGG 58.828 52.381 0.00 0.00 37.12 4.85
852 1269 2.171840 CAGTAGTCAGTGGTAGCTGGT 58.828 52.381 0.00 0.00 37.12 4.00
853 1270 3.245158 ACAGTAGTCAGTGGTAGCTGGTA 60.245 47.826 0.00 0.00 37.12 3.25
854 1271 3.128938 CAGTAGTCAGTGGTAGCTGGTAC 59.871 52.174 8.46 8.46 37.12 3.34
855 1272 2.606751 AGTCAGTGGTAGCTGGTACT 57.393 50.000 15.74 0.00 37.12 2.73
856 1273 2.448453 AGTCAGTGGTAGCTGGTACTC 58.552 52.381 15.74 9.87 37.12 2.59
857 1274 2.168496 GTCAGTGGTAGCTGGTACTCA 58.832 52.381 15.74 9.78 37.12 3.41
858 1275 2.761208 GTCAGTGGTAGCTGGTACTCAT 59.239 50.000 15.74 0.74 37.12 2.90
859 1276 3.952323 GTCAGTGGTAGCTGGTACTCATA 59.048 47.826 15.74 0.00 37.12 2.15
860 1277 3.952323 TCAGTGGTAGCTGGTACTCATAC 59.048 47.826 15.74 10.25 37.12 2.39
861 1278 3.954904 CAGTGGTAGCTGGTACTCATACT 59.045 47.826 15.74 11.94 33.11 2.12
862 1279 4.036971 CAGTGGTAGCTGGTACTCATACTC 59.963 50.000 15.74 1.67 33.11 2.59
863 1280 3.003482 GTGGTAGCTGGTACTCATACTCG 59.997 52.174 15.74 0.00 0.00 4.18
864 1281 2.553172 GGTAGCTGGTACTCATACTCGG 59.447 54.545 15.74 0.00 0.00 4.63
865 1282 2.730934 AGCTGGTACTCATACTCGGA 57.269 50.000 0.00 0.00 0.00 4.55
866 1283 3.014304 AGCTGGTACTCATACTCGGAA 57.986 47.619 0.00 0.00 0.00 4.30
867 1284 3.567397 AGCTGGTACTCATACTCGGAAT 58.433 45.455 0.00 0.00 0.00 3.01
917 1334 0.999228 CACCTATAAGCTCGCTCGCG 60.999 60.000 0.00 0.00 41.35 5.87
918 1335 1.442857 CCTATAAGCTCGCTCGCGG 60.443 63.158 6.13 0.00 40.25 6.46
919 1336 1.442857 CTATAAGCTCGCTCGCGGG 60.443 63.158 6.13 2.60 43.79 6.13
1020 1437 1.406065 ATACCCAGCGAGCAGAGCAT 61.406 55.000 0.00 0.00 37.01 3.79
1167 1597 3.485431 CGTCGAGCTGCAGCAAGG 61.485 66.667 38.24 25.87 45.16 3.61
1218 1648 1.892474 ACTTGTCAGTCTCCAGCTCTC 59.108 52.381 0.00 0.00 0.00 3.20
1219 1649 1.204467 CTTGTCAGTCTCCAGCTCTCC 59.796 57.143 0.00 0.00 0.00 3.71
1220 1650 0.613292 TGTCAGTCTCCAGCTCTCCC 60.613 60.000 0.00 0.00 0.00 4.30
1221 1651 0.324275 GTCAGTCTCCAGCTCTCCCT 60.324 60.000 0.00 0.00 0.00 4.20
1222 1652 0.033601 TCAGTCTCCAGCTCTCCCTC 60.034 60.000 0.00 0.00 0.00 4.30
1223 1653 0.033208 CAGTCTCCAGCTCTCCCTCT 60.033 60.000 0.00 0.00 0.00 3.69
1224 1654 0.258774 AGTCTCCAGCTCTCCCTCTC 59.741 60.000 0.00 0.00 0.00 3.20
1225 1655 0.755327 GTCTCCAGCTCTCCCTCTCC 60.755 65.000 0.00 0.00 0.00 3.71
1226 1656 1.457455 CTCCAGCTCTCCCTCTCCC 60.457 68.421 0.00 0.00 0.00 4.30
1227 1657 1.938596 TCCAGCTCTCCCTCTCCCT 60.939 63.158 0.00 0.00 0.00 4.20
1228 1658 1.761667 CCAGCTCTCCCTCTCCCTG 60.762 68.421 0.00 0.00 0.00 4.45
1229 1659 2.042025 AGCTCTCCCTCTCCCTGC 60.042 66.667 0.00 0.00 0.00 4.85
1230 1660 3.160748 GCTCTCCCTCTCCCTGCC 61.161 72.222 0.00 0.00 0.00 4.85
1231 1661 2.695597 CTCTCCCTCTCCCTGCCT 59.304 66.667 0.00 0.00 0.00 4.75
1232 1662 1.002792 CTCTCCCTCTCCCTGCCTT 59.997 63.158 0.00 0.00 0.00 4.35
1248 1678 1.912731 GCCTTCCTTCCTTCCTTCTCT 59.087 52.381 0.00 0.00 0.00 3.10
1251 1681 3.449918 CTTCCTTCCTTCCTTCTCTCCT 58.550 50.000 0.00 0.00 0.00 3.69
1253 1683 2.383683 TCCTTCCTTCCTTCTCTCCTCA 59.616 50.000 0.00 0.00 0.00 3.86
1254 1684 2.499693 CCTTCCTTCCTTCTCTCCTCAC 59.500 54.545 0.00 0.00 0.00 3.51
1255 1685 1.840737 TCCTTCCTTCTCTCCTCACG 58.159 55.000 0.00 0.00 0.00 4.35
1306 1744 1.016653 GGAGTTCTTCTGCTCACGCC 61.017 60.000 0.00 0.00 33.66 5.68
1355 1793 1.362406 CGAAGAAGGCGAAGAAGGGC 61.362 60.000 0.00 0.00 0.00 5.19
1394 1832 0.980231 AGATGGAGGCCTTCTTCGCT 60.980 55.000 18.83 5.65 34.92 4.93
1447 1888 2.380410 CCAAGTGAGTACCGCGCAC 61.380 63.158 8.75 2.58 46.25 5.34
1479 1925 1.488393 AGGCAACAGCTTCCTCCTATC 59.512 52.381 0.00 0.00 41.41 2.08
1585 2045 1.209019 AGTAACATGAGGCCTCTGCTG 59.791 52.381 32.28 26.07 37.74 4.41
1586 2046 0.107508 TAACATGAGGCCTCTGCTGC 60.108 55.000 32.28 7.15 37.74 5.25
1624 2084 1.745087 AGTCAGTTTGGTGTTGCACAG 59.255 47.619 1.61 0.00 35.86 3.66
1719 2181 7.168135 CCGGTTTTCTTTTTCTCTTGATTGAAG 59.832 37.037 0.00 0.00 0.00 3.02
1772 2234 7.138736 AGGAATTTGAACAAAATCACTACACG 58.861 34.615 14.47 0.00 37.51 4.49
1826 2535 5.333566 AGTTTTGGGGATCTTGGTCTTTA 57.666 39.130 0.00 0.00 0.00 1.85
1827 2536 5.711698 AGTTTTGGGGATCTTGGTCTTTAA 58.288 37.500 0.00 0.00 0.00 1.52
1850 2570 0.180878 AAAAACTGGAACGGACCGGA 59.819 50.000 20.00 0.00 39.41 5.14
1936 2662 8.921205 AGCTCAAGCAATTATATTTCCAGAAAT 58.079 29.630 10.30 10.30 45.16 2.17
2119 2846 1.793258 CAGCCAGTCAAGTGTCAGAG 58.207 55.000 0.00 0.00 0.00 3.35
2208 2947 9.884465 CTTTATTAGCTGTAATTATTGCTCACC 57.116 33.333 15.35 0.00 37.02 4.02
2224 2963 2.812591 CTCACCAGATGCCTAATCATGC 59.187 50.000 0.00 0.00 37.81 4.06
2226 2965 2.292569 CACCAGATGCCTAATCATGCAC 59.707 50.000 0.00 0.00 40.88 4.57
2227 2966 2.174210 ACCAGATGCCTAATCATGCACT 59.826 45.455 0.00 0.00 40.88 4.40
2228 2967 2.552743 CCAGATGCCTAATCATGCACTG 59.447 50.000 0.00 0.00 40.88 3.66
2229 2968 3.211865 CAGATGCCTAATCATGCACTGT 58.788 45.455 0.00 0.00 40.88 3.55
2230 2969 4.383173 CAGATGCCTAATCATGCACTGTA 58.617 43.478 0.00 0.00 40.88 2.74
2231 2970 5.001874 CAGATGCCTAATCATGCACTGTAT 58.998 41.667 0.00 0.00 40.88 2.29
2232 2971 5.472478 CAGATGCCTAATCATGCACTGTATT 59.528 40.000 0.00 0.00 40.88 1.89
2257 3000 0.685097 ACCATGTAAGTCGCCAGTGT 59.315 50.000 0.00 0.00 0.00 3.55
2264 3011 3.991773 TGTAAGTCGCCAGTGTATTGTTC 59.008 43.478 0.00 0.00 0.00 3.18
2283 3031 0.462759 CCACCTGTAGCTAGCTTGCC 60.463 60.000 24.88 11.91 0.00 4.52
2311 3061 8.996988 TTAACTTGTCGTGATATGTTTTGTTC 57.003 30.769 3.84 0.00 0.00 3.18
2325 3075 7.790823 ATGTTTTGTTCCATCAAGAAAAAGG 57.209 32.000 0.00 0.00 38.57 3.11
2329 3079 6.790232 TTGTTCCATCAAGAAAAAGGAAGT 57.210 33.333 0.00 0.00 38.90 3.01
2366 3116 8.538856 GTGTACATTGTCTCGTAGTAGTAGTAG 58.461 40.741 0.00 0.00 0.00 2.57
2367 3117 8.253810 TGTACATTGTCTCGTAGTAGTAGTAGT 58.746 37.037 0.00 0.00 0.00 2.73
2368 3118 9.737427 GTACATTGTCTCGTAGTAGTAGTAGTA 57.263 37.037 0.00 0.00 0.00 1.82
2369 3119 8.870160 ACATTGTCTCGTAGTAGTAGTAGTAG 57.130 38.462 0.00 0.00 0.00 2.57
2370 3120 7.925483 ACATTGTCTCGTAGTAGTAGTAGTAGG 59.075 40.741 5.98 5.98 0.00 3.18
2371 3121 7.411486 TTGTCTCGTAGTAGTAGTAGTAGGT 57.589 40.000 10.50 0.00 0.00 3.08
2372 3122 8.521170 TTGTCTCGTAGTAGTAGTAGTAGGTA 57.479 38.462 10.50 1.25 0.00 3.08
2373 3123 7.932335 TGTCTCGTAGTAGTAGTAGTAGGTAC 58.068 42.308 10.50 10.40 0.00 3.34
2374 3124 7.776030 TGTCTCGTAGTAGTAGTAGTAGGTACT 59.224 40.741 10.50 0.00 44.69 2.73
2375 3125 8.287503 GTCTCGTAGTAGTAGTAGTAGGTACTC 58.712 44.444 10.50 0.00 41.42 2.59
2376 3126 7.446013 TCTCGTAGTAGTAGTAGTAGGTACTCC 59.554 44.444 10.50 0.00 41.42 3.85
2377 3127 6.490721 TCGTAGTAGTAGTAGTAGGTACTCCC 59.509 46.154 10.50 0.00 41.42 4.30
2379 3129 6.994421 AGTAGTAGTAGTAGGTACTCCCTC 57.006 45.833 0.00 0.00 44.81 4.30
2380 3130 5.843969 AGTAGTAGTAGTAGGTACTCCCTCC 59.156 48.000 0.00 0.00 44.81 4.30
2381 3131 3.645687 AGTAGTAGTAGGTACTCCCTCCG 59.354 52.174 0.00 0.00 44.81 4.63
2382 3132 2.486716 AGTAGTAGGTACTCCCTCCGT 58.513 52.381 0.00 0.00 44.81 4.69
2383 3133 2.437651 AGTAGTAGGTACTCCCTCCGTC 59.562 54.545 0.00 0.00 44.81 4.79
2384 3134 0.550432 AGTAGGTACTCCCTCCGTCC 59.450 60.000 0.00 0.00 44.81 4.79
2385 3135 0.467106 GTAGGTACTCCCTCCGTCCC 60.467 65.000 0.00 0.00 44.81 4.46
2386 3136 0.920763 TAGGTACTCCCTCCGTCCCA 60.921 60.000 0.00 0.00 44.81 4.37
2387 3137 1.305549 GGTACTCCCTCCGTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
2388 3138 0.906282 GGTACTCCCTCCGTCCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
2389 3139 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2390 3140 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2391 3141 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2392 3142 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2393 3143 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2394 3144 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2395 3145 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2396 3146 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2397 3147 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2398 3148 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2399 3149 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2400 3150 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2401 3151 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2402 3152 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2403 3153 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2404 3154 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2405 3155 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2406 3156 8.726988 CGTCCCAAAATTCTTGTCTTAGATTTA 58.273 33.333 0.00 0.00 0.00 1.40
2439 3189 8.462143 ACAGATGTATCTAACACTAAAACGTG 57.538 34.615 0.00 0.00 42.09 4.49
2440 3190 8.301720 ACAGATGTATCTAACACTAAAACGTGA 58.698 33.333 0.00 0.00 42.09 4.35
2441 3191 9.135843 CAGATGTATCTAACACTAAAACGTGAA 57.864 33.333 0.00 0.00 42.09 3.18
2442 3192 9.871238 AGATGTATCTAACACTAAAACGTGAAT 57.129 29.630 0.00 0.00 42.09 2.57
2449 3199 9.494479 TCTAACACTAAAACGTGAATAGATACG 57.506 33.333 8.90 0.00 45.19 3.06
2458 3208 5.027206 CGTGAATAGATACGTCCGTATGT 57.973 43.478 16.33 14.57 40.93 2.29
2459 3209 6.156932 CGTGAATAGATACGTCCGTATGTA 57.843 41.667 16.33 16.14 40.93 2.29
2460 3210 6.239226 CGTGAATAGATACGTCCGTATGTAG 58.761 44.000 16.33 2.39 40.93 2.74
2461 3211 6.089954 CGTGAATAGATACGTCCGTATGTAGA 59.910 42.308 16.33 0.14 40.93 2.59
2462 3212 7.232994 GTGAATAGATACGTCCGTATGTAGAC 58.767 42.308 16.33 13.62 40.93 2.59
2463 3213 6.930722 TGAATAGATACGTCCGTATGTAGACA 59.069 38.462 16.33 15.48 40.93 3.41
2464 3214 7.442062 TGAATAGATACGTCCGTATGTAGACAA 59.558 37.037 16.33 0.00 40.93 3.18
2465 3215 7.734924 ATAGATACGTCCGTATGTAGACAAA 57.265 36.000 16.33 0.00 40.93 2.83
2466 3216 6.630444 AGATACGTCCGTATGTAGACAAAT 57.370 37.500 16.33 0.00 40.93 2.32
2467 3217 6.666417 AGATACGTCCGTATGTAGACAAATC 58.334 40.000 16.33 1.16 40.93 2.17
2468 3218 4.978083 ACGTCCGTATGTAGACAAATCT 57.022 40.909 0.00 0.00 39.15 2.40
2469 3219 7.658982 AGATACGTCCGTATGTAGACAAATCTA 59.341 37.037 16.33 0.00 40.93 1.98
2470 3220 6.441093 ACGTCCGTATGTAGACAAATCTAA 57.559 37.500 0.00 0.00 39.20 2.10
2471 3221 6.493116 ACGTCCGTATGTAGACAAATCTAAG 58.507 40.000 0.00 0.00 39.20 2.18
2472 3222 6.317140 ACGTCCGTATGTAGACAAATCTAAGA 59.683 38.462 0.00 0.00 39.20 2.10
2473 3223 6.632035 CGTCCGTATGTAGACAAATCTAAGAC 59.368 42.308 0.00 0.00 39.20 3.01
2474 3224 7.478322 GTCCGTATGTAGACAAATCTAAGACA 58.522 38.462 0.00 0.00 39.20 3.41
2475 3225 7.972277 GTCCGTATGTAGACAAATCTAAGACAA 59.028 37.037 0.00 0.00 39.20 3.18
2476 3226 8.188799 TCCGTATGTAGACAAATCTAAGACAAG 58.811 37.037 0.00 0.00 39.20 3.16
2477 3227 8.188799 CCGTATGTAGACAAATCTAAGACAAGA 58.811 37.037 0.00 0.00 39.20 3.02
2478 3228 9.569167 CGTATGTAGACAAATCTAAGACAAGAA 57.431 33.333 0.00 0.00 39.20 2.52
2488 3238 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
2489 3239 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
2490 3240 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
2491 3241 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
2492 3242 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
2493 3243 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
2494 3244 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
2495 3245 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
2496 3246 2.907042 AGAATTTTGAGACGGAGGGAGT 59.093 45.455 0.00 0.00 0.00 3.85
2497 3247 4.094476 AGAATTTTGAGACGGAGGGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
2498 3248 4.160626 AGAATTTTGAGACGGAGGGAGTAG 59.839 45.833 0.00 0.00 0.00 2.57
2499 3249 2.599408 TTTGAGACGGAGGGAGTAGT 57.401 50.000 0.00 0.00 0.00 2.73
2500 3250 3.726557 TTTGAGACGGAGGGAGTAGTA 57.273 47.619 0.00 0.00 0.00 1.82
2512 3262 5.480205 GAGGGAGTAGTACTTTTGTTCTGG 58.520 45.833 0.00 0.00 32.31 3.86
2531 3282 1.672881 GGCACTGCATATCTCAACACC 59.327 52.381 2.82 0.00 0.00 4.16
2547 3298 4.469586 TCAACACCTCATAGCATGGTAAGA 59.530 41.667 8.98 9.16 32.13 2.10
2548 3299 4.679373 ACACCTCATAGCATGGTAAGAG 57.321 45.455 23.68 23.68 32.13 2.85
2551 3302 3.455910 ACCTCATAGCATGGTAAGAGCAA 59.544 43.478 24.72 0.00 31.50 3.91
2552 3303 4.080356 ACCTCATAGCATGGTAAGAGCAAA 60.080 41.667 24.72 0.00 31.50 3.68
2553 3304 5.068636 CCTCATAGCATGGTAAGAGCAAAT 58.931 41.667 24.72 0.00 0.00 2.32
2554 3305 5.180868 CCTCATAGCATGGTAAGAGCAAATC 59.819 44.000 24.72 0.00 0.00 2.17
2555 3306 5.933617 TCATAGCATGGTAAGAGCAAATCT 58.066 37.500 8.98 0.00 41.27 2.40
2556 3307 7.066307 TCATAGCATGGTAAGAGCAAATCTA 57.934 36.000 8.98 0.00 37.23 1.98
2557 3308 6.931281 TCATAGCATGGTAAGAGCAAATCTAC 59.069 38.462 8.98 0.00 37.23 2.59
2558 3309 4.122776 AGCATGGTAAGAGCAAATCTACG 58.877 43.478 0.00 0.00 37.23 3.51
2573 3324 5.416271 AATCTACGGCCTACTTTCAAAGA 57.584 39.130 3.49 0.00 0.00 2.52
2577 3328 4.830826 ACGGCCTACTTTCAAAGAAAAG 57.169 40.909 3.49 0.00 41.15 2.27
2589 3340 5.695851 TCAAAGAAAAGTCATTCAGAGCC 57.304 39.130 0.00 0.00 0.00 4.70
2592 3343 2.303022 AGAAAAGTCATTCAGAGCCGGA 59.697 45.455 5.05 0.00 0.00 5.14
2593 3344 2.100605 AAAGTCATTCAGAGCCGGAC 57.899 50.000 5.05 0.00 0.00 4.79
2594 3345 1.270907 AAGTCATTCAGAGCCGGACT 58.729 50.000 5.05 0.50 40.33 3.85
2595 3346 2.145397 AGTCATTCAGAGCCGGACTA 57.855 50.000 5.05 0.00 37.08 2.59
2603 3354 3.628008 TCAGAGCCGGACTAGACAAATA 58.372 45.455 5.05 0.00 0.00 1.40
2610 3361 2.686915 CGGACTAGACAAATACGACCCT 59.313 50.000 0.00 0.00 0.00 4.34
2611 3362 3.879295 CGGACTAGACAAATACGACCCTA 59.121 47.826 0.00 0.00 0.00 3.53
2613 3364 4.277921 GGACTAGACAAATACGACCCTAGG 59.722 50.000 0.06 0.06 0.00 3.02
2650 3404 0.670546 GACATGTCCGGGACAGTGTG 60.671 60.000 31.56 27.23 46.04 3.82
2655 3415 4.394712 CCGGGACAGTGTGCCCTC 62.395 72.222 26.25 3.91 41.08 4.30
2661 3421 1.609208 GACAGTGTGCCCTCAAATGT 58.391 50.000 0.00 0.00 0.00 2.71
2662 3422 1.956477 GACAGTGTGCCCTCAAATGTT 59.044 47.619 0.00 0.00 0.00 2.71
2679 3439 2.766313 TGTTCTACTGCACATCACACC 58.234 47.619 0.00 0.00 0.00 4.16
2681 3441 1.644509 TCTACTGCACATCACACCCT 58.355 50.000 0.00 0.00 0.00 4.34
2711 3471 4.895668 AAACCTCAAATCCATGCACATT 57.104 36.364 0.00 0.00 0.00 2.71
2721 3481 6.911250 AATCCATGCACATTGATCATACAT 57.089 33.333 0.00 0.00 0.00 2.29
2838 3605 9.612620 CATTAAACTCCTTGTTTCTATTGTGTC 57.387 33.333 0.00 0.00 44.81 3.67
2867 3634 0.443869 GCTCCACAAGCGTGTACATG 59.556 55.000 10.89 10.89 42.21 3.21
2889 3675 2.879026 TCGATCTCGAAGATTCCGATGT 59.121 45.455 0.00 0.00 46.30 3.06
2932 3721 0.863119 GCTTCGCATCATGTTTCGGC 60.863 55.000 0.00 0.00 0.00 5.54
2938 3727 1.078497 ATCATGTTTCGGCAGGCGA 60.078 52.632 16.33 16.33 0.00 5.54
2951 3740 1.156736 CAGGCGAACTTGTACCCTTG 58.843 55.000 0.00 0.00 0.00 3.61
2975 3765 5.337009 GGGCTTCTCAAAATCATGTGTTCAT 60.337 40.000 0.00 0.00 34.21 2.57
2989 3779 0.610232 GTTCATGCTGCCCCTTCACT 60.610 55.000 0.00 0.00 0.00 3.41
3001 3791 2.776536 CCCCTTCACTCTCATCATCCTT 59.223 50.000 0.00 0.00 0.00 3.36
3245 4040 8.049117 AGGATATATACCATTGGCAATGTAGTG 58.951 37.037 31.88 21.45 37.18 2.74
3250 4045 2.621407 CCATTGGCAATGTAGTGTCCCT 60.621 50.000 31.88 0.00 37.18 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.870426 GTCTTCTAACATTCCTCGATGCAA 59.130 41.667 0.00 0.00 0.00 4.08
4 5 4.081697 TGTCTTCTAACATTCCTCGATGCA 60.082 41.667 0.00 0.00 0.00 3.96
5 6 4.433615 TGTCTTCTAACATTCCTCGATGC 58.566 43.478 0.00 0.00 0.00 3.91
6 7 7.545362 AAATGTCTTCTAACATTCCTCGATG 57.455 36.000 3.00 0.00 46.49 3.84
7 8 8.567285 AAAAATGTCTTCTAACATTCCTCGAT 57.433 30.769 3.00 0.00 46.49 3.59
8 9 7.979444 AAAAATGTCTTCTAACATTCCTCGA 57.021 32.000 3.00 0.00 46.49 4.04
9 10 9.760660 CTTAAAAATGTCTTCTAACATTCCTCG 57.239 33.333 3.00 0.00 46.49 4.63
11 12 9.588096 ACCTTAAAAATGTCTTCTAACATTCCT 57.412 29.630 3.00 0.00 46.49 3.36
55 56 9.120538 ACTTAAATCCAAAATCTGTATGCGTAT 57.879 29.630 0.00 0.00 0.00 3.06
56 57 8.394877 CACTTAAATCCAAAATCTGTATGCGTA 58.605 33.333 0.00 0.00 0.00 4.42
57 58 7.094377 ACACTTAAATCCAAAATCTGTATGCGT 60.094 33.333 0.00 0.00 0.00 5.24
58 59 7.250569 ACACTTAAATCCAAAATCTGTATGCG 58.749 34.615 0.00 0.00 0.00 4.73
59 60 8.986477 AACACTTAAATCCAAAATCTGTATGC 57.014 30.769 0.00 0.00 0.00 3.14
63 64 9.349713 TCAGTAACACTTAAATCCAAAATCTGT 57.650 29.630 0.00 0.00 0.00 3.41
78 79 8.935844 CACACACACATATAATCAGTAACACTT 58.064 33.333 0.00 0.00 0.00 3.16
79 80 8.094548 ACACACACACATATAATCAGTAACACT 58.905 33.333 0.00 0.00 0.00 3.55
80 81 8.251750 ACACACACACATATAATCAGTAACAC 57.748 34.615 0.00 0.00 0.00 3.32
81 82 8.840833 AACACACACACATATAATCAGTAACA 57.159 30.769 0.00 0.00 0.00 2.41
90 91 9.938670 GTTGTCTAAAAACACACACACATATAA 57.061 29.630 0.00 0.00 0.00 0.98
91 92 9.332502 AGTTGTCTAAAAACACACACACATATA 57.667 29.630 0.00 0.00 0.00 0.86
92 93 8.220755 AGTTGTCTAAAAACACACACACATAT 57.779 30.769 0.00 0.00 0.00 1.78
93 94 7.618502 AGTTGTCTAAAAACACACACACATA 57.381 32.000 0.00 0.00 0.00 2.29
94 95 6.509418 AGTTGTCTAAAAACACACACACAT 57.491 33.333 0.00 0.00 0.00 3.21
95 96 5.950758 AGTTGTCTAAAAACACACACACA 57.049 34.783 0.00 0.00 0.00 3.72
120 121 8.826710 GCCATTGTAATATACGTGTGCATATAT 58.173 33.333 0.00 0.00 0.00 0.86
121 122 8.038351 AGCCATTGTAATATACGTGTGCATATA 58.962 33.333 0.00 0.00 0.00 0.86
122 123 6.878923 AGCCATTGTAATATACGTGTGCATAT 59.121 34.615 0.00 0.00 0.00 1.78
123 124 6.227522 AGCCATTGTAATATACGTGTGCATA 58.772 36.000 0.00 0.00 0.00 3.14
124 125 5.063204 AGCCATTGTAATATACGTGTGCAT 58.937 37.500 0.00 0.00 0.00 3.96
125 126 4.447290 AGCCATTGTAATATACGTGTGCA 58.553 39.130 0.00 0.00 0.00 4.57
126 127 4.376008 CGAGCCATTGTAATATACGTGTGC 60.376 45.833 0.00 0.00 0.00 4.57
127 128 4.743151 ACGAGCCATTGTAATATACGTGTG 59.257 41.667 0.00 0.00 0.00 3.82
128 129 4.940463 ACGAGCCATTGTAATATACGTGT 58.060 39.130 0.00 0.00 0.00 4.49
129 130 8.851960 ATATACGAGCCATTGTAATATACGTG 57.148 34.615 0.00 0.00 33.72 4.49
134 135 7.931948 GCCCTAATATACGAGCCATTGTAATAT 59.068 37.037 0.00 0.00 0.00 1.28
135 136 7.270047 GCCCTAATATACGAGCCATTGTAATA 58.730 38.462 0.00 0.00 0.00 0.98
136 137 6.113411 GCCCTAATATACGAGCCATTGTAAT 58.887 40.000 0.00 0.00 0.00 1.89
137 138 5.484715 GCCCTAATATACGAGCCATTGTAA 58.515 41.667 0.00 0.00 0.00 2.41
138 139 4.081309 GGCCCTAATATACGAGCCATTGTA 60.081 45.833 0.00 0.00 40.20 2.41
139 140 3.307480 GGCCCTAATATACGAGCCATTGT 60.307 47.826 0.00 0.00 40.20 2.71
140 141 3.270877 GGCCCTAATATACGAGCCATTG 58.729 50.000 0.00 0.00 40.20 2.82
141 142 2.238898 GGGCCCTAATATACGAGCCATT 59.761 50.000 17.04 0.00 42.29 3.16
142 143 1.838077 GGGCCCTAATATACGAGCCAT 59.162 52.381 17.04 0.00 42.29 4.40
143 144 1.272807 GGGCCCTAATATACGAGCCA 58.727 55.000 17.04 0.00 42.29 4.75
144 145 0.540454 GGGGCCCTAATATACGAGCC 59.460 60.000 24.38 0.00 39.73 4.70
145 146 0.540454 GGGGGCCCTAATATACGAGC 59.460 60.000 24.38 0.00 0.00 5.03
146 147 1.946984 TGGGGGCCCTAATATACGAG 58.053 55.000 24.38 0.00 36.94 4.18
147 148 2.419457 TTGGGGGCCCTAATATACGA 57.581 50.000 24.38 0.00 36.94 3.43
148 149 3.732048 AATTGGGGGCCCTAATATACG 57.268 47.619 31.64 0.00 36.94 3.06
149 150 7.014449 ACTTAAAATTGGGGGCCCTAATATAC 58.986 38.462 31.64 10.18 36.94 1.47
150 151 7.182017 ACTTAAAATTGGGGGCCCTAATATA 57.818 36.000 31.64 23.75 36.94 0.86
151 152 6.050686 ACTTAAAATTGGGGGCCCTAATAT 57.949 37.500 31.64 24.68 36.94 1.28
152 153 5.490995 ACTTAAAATTGGGGGCCCTAATA 57.509 39.130 31.64 15.83 36.94 0.98
153 154 4.361984 ACTTAAAATTGGGGGCCCTAAT 57.638 40.909 27.03 27.03 36.94 1.73
154 155 3.856747 ACTTAAAATTGGGGGCCCTAA 57.143 42.857 24.73 24.73 36.94 2.69
155 156 3.715287 GAACTTAAAATTGGGGGCCCTA 58.285 45.455 24.38 15.40 36.94 3.53
156 157 2.546899 GAACTTAAAATTGGGGGCCCT 58.453 47.619 24.38 3.25 36.94 5.19
157 158 1.206132 CGAACTTAAAATTGGGGGCCC 59.794 52.381 15.76 15.76 0.00 5.80
158 159 1.404986 GCGAACTTAAAATTGGGGGCC 60.405 52.381 0.00 0.00 0.00 5.80
159 160 1.404986 GGCGAACTTAAAATTGGGGGC 60.405 52.381 0.00 0.00 0.00 5.80
160 161 1.206132 GGGCGAACTTAAAATTGGGGG 59.794 52.381 0.00 0.00 0.00 5.40
161 162 1.206132 GGGGCGAACTTAAAATTGGGG 59.794 52.381 0.00 0.00 0.00 4.96
162 163 1.135228 CGGGGCGAACTTAAAATTGGG 60.135 52.381 0.00 0.00 0.00 4.12
163 164 1.135228 CCGGGGCGAACTTAAAATTGG 60.135 52.381 0.00 0.00 0.00 3.16
164 165 1.135228 CCCGGGGCGAACTTAAAATTG 60.135 52.381 14.71 0.00 0.00 2.32
165 166 1.179152 CCCGGGGCGAACTTAAAATT 58.821 50.000 14.71 0.00 0.00 1.82
166 167 1.317431 GCCCGGGGCGAACTTAAAAT 61.317 55.000 24.63 0.00 39.62 1.82
167 168 1.972752 GCCCGGGGCGAACTTAAAA 60.973 57.895 24.63 0.00 39.62 1.52
168 169 2.360225 GCCCGGGGCGAACTTAAA 60.360 61.111 24.63 0.00 39.62 1.52
182 183 2.193248 CTGAGATTTCGGGGGCCC 59.807 66.667 15.76 15.76 0.00 5.80
183 184 2.193248 CCTGAGATTTCGGGGGCC 59.807 66.667 3.02 0.00 44.82 5.80
188 189 1.521681 GCCGGTCCTGAGATTTCGG 60.522 63.158 1.90 0.00 36.58 4.30
189 190 1.521681 GGCCGGTCCTGAGATTTCG 60.522 63.158 1.90 0.00 0.00 3.46
190 191 1.153147 GGGCCGGTCCTGAGATTTC 60.153 63.158 20.78 0.00 34.39 2.17
191 192 1.616628 AGGGCCGGTCCTGAGATTT 60.617 57.895 31.20 0.00 35.47 2.17
192 193 2.041265 AGGGCCGGTCCTGAGATT 59.959 61.111 31.20 0.00 35.47 2.40
200 201 3.787001 CTCCTTCCAGGGCCGGTC 61.787 72.222 1.90 0.00 35.59 4.79
204 205 4.120755 CTGCCTCCTTCCAGGGCC 62.121 72.222 0.00 0.00 44.71 5.80
205 206 1.348775 ATACTGCCTCCTTCCAGGGC 61.349 60.000 0.00 0.00 45.45 5.19
206 207 2.103153 TATACTGCCTCCTTCCAGGG 57.897 55.000 0.00 0.00 35.59 4.45
207 208 3.392616 ACAATATACTGCCTCCTTCCAGG 59.607 47.826 0.00 0.00 36.46 4.45
208 209 4.696479 ACAATATACTGCCTCCTTCCAG 57.304 45.455 0.00 0.00 35.26 3.86
209 210 6.101150 ACATTACAATATACTGCCTCCTTCCA 59.899 38.462 0.00 0.00 0.00 3.53
210 211 6.534634 ACATTACAATATACTGCCTCCTTCC 58.465 40.000 0.00 0.00 0.00 3.46
247 253 1.409790 ACCTTTGTTTTTACCCGTGCC 59.590 47.619 0.00 0.00 0.00 5.01
266 272 0.954452 CAGTGCCCAAACTGGAAGAC 59.046 55.000 0.00 0.00 43.22 3.01
308 316 4.436998 CCGCCGAGTCCTGTGACC 62.437 72.222 0.00 0.00 42.81 4.02
311 319 4.379243 AAGCCGCCGAGTCCTGTG 62.379 66.667 0.00 0.00 0.00 3.66
312 320 4.379243 CAAGCCGCCGAGTCCTGT 62.379 66.667 0.00 0.00 0.00 4.00
313 321 4.379243 ACAAGCCGCCGAGTCCTG 62.379 66.667 0.00 0.00 0.00 3.86
314 322 4.070552 GACAAGCCGCCGAGTCCT 62.071 66.667 0.00 0.00 0.00 3.85
324 332 2.388232 CGGTTGCTACGGACAAGCC 61.388 63.158 0.00 4.40 41.34 4.35
325 333 3.023591 GCGGTTGCTACGGACAAGC 62.024 63.158 9.88 6.49 41.06 4.01
326 334 2.388232 GGCGGTTGCTACGGACAAG 61.388 63.158 9.88 0.00 42.25 3.16
327 335 2.357760 GGCGGTTGCTACGGACAA 60.358 61.111 9.88 0.00 42.25 3.18
328 336 3.166490 TTGGCGGTTGCTACGGACA 62.166 57.895 10.22 10.22 40.48 4.02
329 337 2.357760 TTGGCGGTTGCTACGGAC 60.358 61.111 9.88 7.38 42.25 4.79
330 338 2.357760 GTTGGCGGTTGCTACGGA 60.358 61.111 9.88 0.00 42.25 4.69
331 339 3.428282 GGTTGGCGGTTGCTACGG 61.428 66.667 1.56 1.56 42.25 4.02
332 340 3.784412 CGGTTGGCGGTTGCTACG 61.784 66.667 0.00 0.00 42.25 3.51
333 341 3.428282 CCGGTTGGCGGTTGCTAC 61.428 66.667 0.00 0.00 42.25 3.58
334 342 3.887335 GACCGGTTGGCGGTTGCTA 62.887 63.158 9.42 0.00 40.18 3.49
337 345 3.656045 GTGACCGGTTGGCGGTTG 61.656 66.667 9.42 0.00 40.18 3.77
338 346 4.941309 GGTGACCGGTTGGCGGTT 62.941 66.667 9.42 0.00 40.18 4.44
350 358 3.234630 TAGCTGTGGCACGGGTGAC 62.235 63.158 34.64 16.13 41.70 3.67
351 359 2.920384 TAGCTGTGGCACGGGTGA 60.920 61.111 34.64 18.99 41.70 4.02
352 360 2.742372 GTAGCTGTGGCACGGGTG 60.742 66.667 34.64 16.33 41.70 4.61
353 361 3.238497 TGTAGCTGTGGCACGGGT 61.238 61.111 31.20 31.20 41.70 5.28
354 362 2.742372 GTGTAGCTGTGGCACGGG 60.742 66.667 26.71 16.11 41.70 5.28
355 363 2.742372 GGTGTAGCTGTGGCACGG 60.742 66.667 22.11 22.11 41.70 4.94
356 364 3.112075 CGGTGTAGCTGTGGCACG 61.112 66.667 13.77 9.03 41.70 5.34
357 365 2.742372 CCGGTGTAGCTGTGGCAC 60.742 66.667 11.55 11.55 41.70 5.01
358 366 4.697756 GCCGGTGTAGCTGTGGCA 62.698 66.667 1.90 0.00 45.06 4.92
359 367 4.697756 TGCCGGTGTAGCTGTGGC 62.698 66.667 1.90 2.83 45.91 5.01
360 368 2.742372 GTGCCGGTGTAGCTGTGG 60.742 66.667 1.90 0.00 0.00 4.17
361 369 3.112075 CGTGCCGGTGTAGCTGTG 61.112 66.667 1.90 0.00 0.00 3.66
362 370 3.612681 ACGTGCCGGTGTAGCTGT 61.613 61.111 1.90 0.00 0.00 4.40
363 371 3.112075 CACGTGCCGGTGTAGCTG 61.112 66.667 0.82 0.00 33.24 4.24
364 372 3.299977 TCACGTGCCGGTGTAGCT 61.300 61.111 11.67 0.00 39.00 3.32
365 373 3.110178 GTCACGTGCCGGTGTAGC 61.110 66.667 11.67 0.00 39.00 3.58
366 374 0.669318 ATTGTCACGTGCCGGTGTAG 60.669 55.000 11.67 0.00 39.00 2.74
367 375 0.602060 TATTGTCACGTGCCGGTGTA 59.398 50.000 11.67 0.00 39.00 2.90
368 376 0.669318 CTATTGTCACGTGCCGGTGT 60.669 55.000 11.67 0.00 39.00 4.16
369 377 0.669318 ACTATTGTCACGTGCCGGTG 60.669 55.000 11.67 1.82 39.29 4.94
370 378 0.889994 TACTATTGTCACGTGCCGGT 59.110 50.000 11.67 6.21 0.00 5.28
371 379 1.556564 CTACTATTGTCACGTGCCGG 58.443 55.000 11.67 0.00 0.00 6.13
372 380 0.921347 GCTACTATTGTCACGTGCCG 59.079 55.000 11.67 0.00 0.00 5.69
373 381 1.927174 CTGCTACTATTGTCACGTGCC 59.073 52.381 11.67 0.00 0.00 5.01
374 382 1.324736 GCTGCTACTATTGTCACGTGC 59.675 52.381 11.67 6.86 0.00 5.34
375 383 2.606108 TGCTGCTACTATTGTCACGTG 58.394 47.619 9.94 9.94 0.00 4.49
376 384 3.526931 ATGCTGCTACTATTGTCACGT 57.473 42.857 0.00 0.00 0.00 4.49
377 385 5.506644 CATATGCTGCTACTATTGTCACG 57.493 43.478 0.00 0.00 0.00 4.35
393 401 3.349006 CGGGTGAGCGGCATATGC 61.349 66.667 19.79 19.79 41.14 3.14
394 402 2.666190 CCGGGTGAGCGGCATATG 60.666 66.667 1.45 0.00 0.00 1.78
414 422 3.246112 TTGGTGGGTGGGTCTCGG 61.246 66.667 0.00 0.00 0.00 4.63
415 423 2.032071 GTTGGTGGGTGGGTCTCG 59.968 66.667 0.00 0.00 0.00 4.04
416 424 2.434774 GGTTGGTGGGTGGGTCTC 59.565 66.667 0.00 0.00 0.00 3.36
417 425 3.566210 CGGTTGGTGGGTGGGTCT 61.566 66.667 0.00 0.00 0.00 3.85
437 445 3.307906 TCCCGTCTTCCCGTGTGG 61.308 66.667 0.00 0.00 0.00 4.17
438 446 2.048503 GTCCCGTCTTCCCGTGTG 60.049 66.667 0.00 0.00 0.00 3.82
439 447 3.677648 CGTCCCGTCTTCCCGTGT 61.678 66.667 0.00 0.00 0.00 4.49
440 448 3.367743 TCGTCCCGTCTTCCCGTG 61.368 66.667 0.00 0.00 0.00 4.94
441 449 3.368571 GTCGTCCCGTCTTCCCGT 61.369 66.667 0.00 0.00 0.00 5.28
442 450 4.471726 CGTCGTCCCGTCTTCCCG 62.472 72.222 0.00 0.00 0.00 5.14
443 451 4.125695 CCGTCGTCCCGTCTTCCC 62.126 72.222 0.00 0.00 0.00 3.97
444 452 4.790861 GCCGTCGTCCCGTCTTCC 62.791 72.222 0.00 0.00 0.00 3.46
445 453 3.352338 ATGCCGTCGTCCCGTCTTC 62.352 63.158 0.00 0.00 0.00 2.87
446 454 3.379445 ATGCCGTCGTCCCGTCTT 61.379 61.111 0.00 0.00 0.00 3.01
447 455 4.129737 CATGCCGTCGTCCCGTCT 62.130 66.667 0.00 0.00 0.00 4.18
451 459 3.576356 CATGCATGCCGTCGTCCC 61.576 66.667 14.93 0.00 0.00 4.46
472 480 4.868900 CGGGAAATTGCGCGCGAG 62.869 66.667 37.18 8.39 42.14 5.03
479 487 0.456142 GGTTCTTCGCGGGAAATTGC 60.456 55.000 16.24 6.75 0.00 3.56
480 488 0.170339 GGGTTCTTCGCGGGAAATTG 59.830 55.000 16.24 5.06 0.00 2.32
481 489 0.963856 GGGGTTCTTCGCGGGAAATT 60.964 55.000 16.24 0.00 0.00 1.82
482 490 1.378119 GGGGTTCTTCGCGGGAAAT 60.378 57.895 16.24 0.00 0.00 2.17
483 491 2.032987 GGGGTTCTTCGCGGGAAA 59.967 61.111 16.24 4.86 0.00 3.13
484 492 4.382320 CGGGGTTCTTCGCGGGAA 62.382 66.667 14.71 14.71 39.03 3.97
534 542 2.665008 TAGATGCATGCGCTGGGGTC 62.665 60.000 19.59 1.51 39.64 4.46
535 543 2.745308 TAGATGCATGCGCTGGGGT 61.745 57.895 19.59 1.31 39.64 4.95
536 544 2.111669 TAGATGCATGCGCTGGGG 59.888 61.111 19.59 0.00 39.64 4.96
537 545 2.256591 GGTAGATGCATGCGCTGGG 61.257 63.158 19.59 0.00 39.64 4.45
538 546 1.524393 TGGTAGATGCATGCGCTGG 60.524 57.895 19.59 0.90 39.64 4.85
539 547 1.645455 GTGGTAGATGCATGCGCTG 59.355 57.895 19.59 5.66 39.64 5.18
540 548 1.884464 CGTGGTAGATGCATGCGCT 60.884 57.895 14.09 15.13 39.64 5.92
541 549 2.628106 CGTGGTAGATGCATGCGC 59.372 61.111 14.09 0.00 39.24 6.09
542 550 0.249280 TACCGTGGTAGATGCATGCG 60.249 55.000 14.09 0.00 0.00 4.73
543 551 3.678921 TACCGTGGTAGATGCATGC 57.321 52.632 11.82 11.82 0.00 4.06
551 559 5.634020 CACTTTCTTTCTTCTACCGTGGTAG 59.366 44.000 18.15 18.15 46.82 3.18
552 560 5.535333 CACTTTCTTTCTTCTACCGTGGTA 58.465 41.667 0.00 0.00 0.00 3.25
553 561 4.377897 CACTTTCTTTCTTCTACCGTGGT 58.622 43.478 0.00 0.00 0.00 4.16
554 562 3.186613 GCACTTTCTTTCTTCTACCGTGG 59.813 47.826 0.00 0.00 0.00 4.94
555 563 3.186613 GGCACTTTCTTTCTTCTACCGTG 59.813 47.826 0.00 0.00 0.00 4.94
556 564 3.400255 GGCACTTTCTTTCTTCTACCGT 58.600 45.455 0.00 0.00 0.00 4.83
557 565 2.742589 GGGCACTTTCTTTCTTCTACCG 59.257 50.000 0.00 0.00 0.00 4.02
558 566 4.022413 AGGGCACTTTCTTTCTTCTACC 57.978 45.455 0.00 0.00 0.00 3.18
559 567 4.456222 GGAAGGGCACTTTCTTTCTTCTAC 59.544 45.833 0.84 0.00 36.97 2.59
560 568 4.506802 GGGAAGGGCACTTTCTTTCTTCTA 60.507 45.833 7.02 0.00 36.97 2.10
561 569 3.491342 GGAAGGGCACTTTCTTTCTTCT 58.509 45.455 0.84 0.00 36.97 2.85
562 570 2.558795 GGGAAGGGCACTTTCTTTCTTC 59.441 50.000 7.02 0.00 36.97 2.87
563 571 2.091333 TGGGAAGGGCACTTTCTTTCTT 60.091 45.455 7.02 0.00 36.97 2.52
564 572 1.499007 TGGGAAGGGCACTTTCTTTCT 59.501 47.619 7.02 0.00 36.97 2.52
565 573 1.613925 GTGGGAAGGGCACTTTCTTTC 59.386 52.381 7.02 0.00 36.97 2.62
566 574 1.217942 AGTGGGAAGGGCACTTTCTTT 59.782 47.619 7.02 0.00 36.97 2.52
567 575 0.853530 AGTGGGAAGGGCACTTTCTT 59.146 50.000 7.02 0.00 36.97 2.52
568 576 0.853530 AAGTGGGAAGGGCACTTTCT 59.146 50.000 7.02 0.00 36.97 2.52
569 577 1.248486 GAAGTGGGAAGGGCACTTTC 58.752 55.000 0.84 0.00 39.02 2.62
570 578 0.178961 GGAAGTGGGAAGGGCACTTT 60.179 55.000 0.84 0.00 39.02 2.66
571 579 1.360393 TGGAAGTGGGAAGGGCACTT 61.360 55.000 0.00 0.00 41.28 3.16
572 580 1.774217 TGGAAGTGGGAAGGGCACT 60.774 57.895 0.00 0.00 0.00 4.40
573 581 1.603739 GTGGAAGTGGGAAGGGCAC 60.604 63.158 0.00 0.00 0.00 5.01
574 582 2.067932 CTGTGGAAGTGGGAAGGGCA 62.068 60.000 0.00 0.00 0.00 5.36
575 583 1.303643 CTGTGGAAGTGGGAAGGGC 60.304 63.158 0.00 0.00 0.00 5.19
576 584 0.478507 AACTGTGGAAGTGGGAAGGG 59.521 55.000 0.00 0.00 39.81 3.95
577 585 1.545651 GGAACTGTGGAAGTGGGAAGG 60.546 57.143 0.00 0.00 39.81 3.46
578 586 1.545651 GGGAACTGTGGAAGTGGGAAG 60.546 57.143 0.00 0.00 39.81 3.46
579 587 0.476771 GGGAACTGTGGAAGTGGGAA 59.523 55.000 0.00 0.00 39.81 3.97
580 588 1.423794 GGGGAACTGTGGAAGTGGGA 61.424 60.000 0.00 0.00 39.81 4.37
581 589 1.074951 GGGGAACTGTGGAAGTGGG 59.925 63.158 0.00 0.00 39.81 4.61
582 590 1.302511 CGGGGAACTGTGGAAGTGG 60.303 63.158 0.00 0.00 39.81 4.00
583 591 4.379174 CGGGGAACTGTGGAAGTG 57.621 61.111 0.00 0.00 39.81 3.16
741 749 4.525949 GAAGGGAGCGGGGCGTAC 62.526 72.222 0.00 0.00 0.00 3.67
748 756 4.806339 AGAGGGGGAAGGGAGCGG 62.806 72.222 0.00 0.00 0.00 5.52
749 757 3.157949 GAGAGGGGGAAGGGAGCG 61.158 72.222 0.00 0.00 0.00 5.03
750 758 1.385206 ATGAGAGGGGGAAGGGAGC 60.385 63.158 0.00 0.00 0.00 4.70
751 759 0.267356 AGATGAGAGGGGGAAGGGAG 59.733 60.000 0.00 0.00 0.00 4.30
752 760 0.266152 GAGATGAGAGGGGGAAGGGA 59.734 60.000 0.00 0.00 0.00 4.20
753 761 0.030705 TGAGATGAGAGGGGGAAGGG 60.031 60.000 0.00 0.00 0.00 3.95
754 762 1.977129 GATGAGATGAGAGGGGGAAGG 59.023 57.143 0.00 0.00 0.00 3.46
755 763 2.899256 GAGATGAGATGAGAGGGGGAAG 59.101 54.545 0.00 0.00 0.00 3.46
756 764 2.427002 GGAGATGAGATGAGAGGGGGAA 60.427 54.545 0.00 0.00 0.00 3.97
757 765 1.148867 GGAGATGAGATGAGAGGGGGA 59.851 57.143 0.00 0.00 0.00 4.81
758 766 1.132913 TGGAGATGAGATGAGAGGGGG 60.133 57.143 0.00 0.00 0.00 5.40
759 767 2.250031 CTGGAGATGAGATGAGAGGGG 58.750 57.143 0.00 0.00 0.00 4.79
760 768 1.619827 GCTGGAGATGAGATGAGAGGG 59.380 57.143 0.00 0.00 0.00 4.30
761 769 2.600790 AGCTGGAGATGAGATGAGAGG 58.399 52.381 0.00 0.00 0.00 3.69
762 770 3.006110 GGAAGCTGGAGATGAGATGAGAG 59.994 52.174 0.00 0.00 0.00 3.20
763 771 2.964464 GGAAGCTGGAGATGAGATGAGA 59.036 50.000 0.00 0.00 0.00 3.27
764 772 2.967201 AGGAAGCTGGAGATGAGATGAG 59.033 50.000 0.00 0.00 0.00 2.90
765 773 2.964464 GAGGAAGCTGGAGATGAGATGA 59.036 50.000 0.00 0.00 0.00 2.92
766 774 2.967201 AGAGGAAGCTGGAGATGAGATG 59.033 50.000 0.00 0.00 0.00 2.90
767 775 3.233507 GAGAGGAAGCTGGAGATGAGAT 58.766 50.000 0.00 0.00 0.00 2.75
768 776 2.665165 GAGAGGAAGCTGGAGATGAGA 58.335 52.381 0.00 0.00 0.00 3.27
769 777 1.688197 GGAGAGGAAGCTGGAGATGAG 59.312 57.143 0.00 0.00 0.00 2.90
770 778 1.290431 AGGAGAGGAAGCTGGAGATGA 59.710 52.381 0.00 0.00 0.00 2.92
771 779 1.792115 AGGAGAGGAAGCTGGAGATG 58.208 55.000 0.00 0.00 0.00 2.90
772 780 2.397597 GAAGGAGAGGAAGCTGGAGAT 58.602 52.381 0.00 0.00 0.00 2.75
773 781 1.621072 GGAAGGAGAGGAAGCTGGAGA 60.621 57.143 0.00 0.00 0.00 3.71
774 782 0.829990 GGAAGGAGAGGAAGCTGGAG 59.170 60.000 0.00 0.00 0.00 3.86
775 783 0.415429 AGGAAGGAGAGGAAGCTGGA 59.585 55.000 0.00 0.00 0.00 3.86
776 784 2.038659 CTAGGAAGGAGAGGAAGCTGG 58.961 57.143 0.00 0.00 0.00 4.85
777 785 1.412343 GCTAGGAAGGAGAGGAAGCTG 59.588 57.143 0.00 0.00 0.00 4.24
778 786 1.290732 AGCTAGGAAGGAGAGGAAGCT 59.709 52.381 0.00 0.00 34.15 3.74
779 787 1.788229 AGCTAGGAAGGAGAGGAAGC 58.212 55.000 0.00 0.00 0.00 3.86
780 788 2.882137 CGTAGCTAGGAAGGAGAGGAAG 59.118 54.545 7.70 0.00 0.00 3.46
781 789 2.423088 CCGTAGCTAGGAAGGAGAGGAA 60.423 54.545 14.94 0.00 0.00 3.36
782 790 1.143277 CCGTAGCTAGGAAGGAGAGGA 59.857 57.143 14.94 0.00 0.00 3.71
783 791 1.133730 ACCGTAGCTAGGAAGGAGAGG 60.134 57.143 14.94 0.00 0.00 3.69
784 792 1.950909 CACCGTAGCTAGGAAGGAGAG 59.049 57.143 14.94 0.00 0.00 3.20
785 793 1.562942 TCACCGTAGCTAGGAAGGAGA 59.437 52.381 14.94 7.58 0.00 3.71
786 794 1.950909 CTCACCGTAGCTAGGAAGGAG 59.049 57.143 14.94 12.96 0.00 3.69
801 1216 4.811557 CCTAATTAACAGCAGCTACTCACC 59.188 45.833 0.00 0.00 0.00 4.02
823 1240 4.587891 ACCACTGACTACTGTACTACTCC 58.412 47.826 0.00 0.00 0.00 3.85
824 1241 5.294060 GCTACCACTGACTACTGTACTACTC 59.706 48.000 0.00 0.00 0.00 2.59
832 1249 2.171840 ACCAGCTACCACTGACTACTG 58.828 52.381 0.00 0.00 40.25 2.74
833 1250 2.606751 ACCAGCTACCACTGACTACT 57.393 50.000 0.00 0.00 40.25 2.57
834 1251 3.354467 AGTACCAGCTACCACTGACTAC 58.646 50.000 0.00 0.00 40.25 2.73
835 1252 3.009805 TGAGTACCAGCTACCACTGACTA 59.990 47.826 0.00 0.00 40.25 2.59
836 1253 2.225041 TGAGTACCAGCTACCACTGACT 60.225 50.000 0.00 0.00 40.25 3.41
837 1254 2.168496 TGAGTACCAGCTACCACTGAC 58.832 52.381 0.00 0.00 40.25 3.51
838 1255 2.597578 TGAGTACCAGCTACCACTGA 57.402 50.000 0.00 0.00 40.25 3.41
840 1257 4.208746 GAGTATGAGTACCAGCTACCACT 58.791 47.826 0.00 0.00 0.00 4.00
841 1258 3.003482 CGAGTATGAGTACCAGCTACCAC 59.997 52.174 0.00 0.00 0.00 4.16
842 1259 3.211865 CGAGTATGAGTACCAGCTACCA 58.788 50.000 0.00 0.00 0.00 3.25
843 1260 2.553172 CCGAGTATGAGTACCAGCTACC 59.447 54.545 0.00 0.00 0.00 3.18
844 1261 3.474600 TCCGAGTATGAGTACCAGCTAC 58.525 50.000 0.00 0.00 0.00 3.58
845 1262 3.851458 TCCGAGTATGAGTACCAGCTA 57.149 47.619 0.00 0.00 0.00 3.32
846 1263 2.730934 TCCGAGTATGAGTACCAGCT 57.269 50.000 0.00 0.00 0.00 4.24
850 1267 3.144506 TCCGATTCCGAGTATGAGTACC 58.855 50.000 0.00 0.00 38.22 3.34
851 1268 4.825546 TTCCGATTCCGAGTATGAGTAC 57.174 45.455 0.00 0.00 38.22 2.73
852 1269 5.314529 AGATTCCGATTCCGAGTATGAGTA 58.685 41.667 0.00 0.00 38.22 2.59
853 1270 4.145807 AGATTCCGATTCCGAGTATGAGT 58.854 43.478 0.00 0.00 38.22 3.41
854 1271 4.457603 AGAGATTCCGATTCCGAGTATGAG 59.542 45.833 0.00 0.00 38.22 2.90
855 1272 4.399219 AGAGATTCCGATTCCGAGTATGA 58.601 43.478 0.00 0.00 38.22 2.15
856 1273 4.670478 CGAGAGATTCCGATTCCGAGTATG 60.670 50.000 0.00 0.00 38.22 2.39
857 1274 3.437395 CGAGAGATTCCGATTCCGAGTAT 59.563 47.826 0.00 0.00 38.22 2.12
858 1275 2.806818 CGAGAGATTCCGATTCCGAGTA 59.193 50.000 0.00 0.00 38.22 2.59
859 1276 1.604755 CGAGAGATTCCGATTCCGAGT 59.395 52.381 0.00 0.00 38.22 4.18
860 1277 1.068885 CCGAGAGATTCCGATTCCGAG 60.069 57.143 0.00 0.00 38.22 4.63
861 1278 0.952280 CCGAGAGATTCCGATTCCGA 59.048 55.000 0.00 0.00 38.22 4.55
862 1279 0.664767 GCCGAGAGATTCCGATTCCG 60.665 60.000 0.00 0.00 0.00 4.30
863 1280 0.676736 AGCCGAGAGATTCCGATTCC 59.323 55.000 0.00 0.00 0.00 3.01
864 1281 1.664588 CGAGCCGAGAGATTCCGATTC 60.665 57.143 0.00 0.00 0.00 2.52
865 1282 0.312416 CGAGCCGAGAGATTCCGATT 59.688 55.000 0.00 0.00 0.00 3.34
866 1283 1.519751 CCGAGCCGAGAGATTCCGAT 61.520 60.000 0.00 0.00 0.00 4.18
867 1284 2.187493 CCGAGCCGAGAGATTCCGA 61.187 63.158 0.00 0.00 0.00 4.55
1070 1491 4.340617 TCTTCCTTCTCTCCTGTTCTCTC 58.659 47.826 0.00 0.00 0.00 3.20
1071 1492 4.396357 TCTTCCTTCTCTCCTGTTCTCT 57.604 45.455 0.00 0.00 0.00 3.10
1218 1648 1.617839 AAGGAAGGCAGGGAGAGGG 60.618 63.158 0.00 0.00 0.00 4.30
1219 1649 1.631071 GGAAGGAAGGCAGGGAGAGG 61.631 65.000 0.00 0.00 0.00 3.69
1220 1650 0.620121 AGGAAGGAAGGCAGGGAGAG 60.620 60.000 0.00 0.00 0.00 3.20
1221 1651 0.178861 AAGGAAGGAAGGCAGGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
1222 1652 0.254462 GAAGGAAGGAAGGCAGGGAG 59.746 60.000 0.00 0.00 0.00 4.30
1223 1653 1.208165 GGAAGGAAGGAAGGCAGGGA 61.208 60.000 0.00 0.00 0.00 4.20
1224 1654 1.210885 AGGAAGGAAGGAAGGCAGGG 61.211 60.000 0.00 0.00 0.00 4.45
1225 1655 0.701147 AAGGAAGGAAGGAAGGCAGG 59.299 55.000 0.00 0.00 0.00 4.85
1226 1656 1.632920 AGAAGGAAGGAAGGAAGGCAG 59.367 52.381 0.00 0.00 0.00 4.85
1227 1657 1.630878 GAGAAGGAAGGAAGGAAGGCA 59.369 52.381 0.00 0.00 0.00 4.75
1228 1658 1.912731 AGAGAAGGAAGGAAGGAAGGC 59.087 52.381 0.00 0.00 0.00 4.35
1229 1659 2.503765 GGAGAGAAGGAAGGAAGGAAGG 59.496 54.545 0.00 0.00 0.00 3.46
1230 1660 3.449918 AGGAGAGAAGGAAGGAAGGAAG 58.550 50.000 0.00 0.00 0.00 3.46
1231 1661 3.181406 TGAGGAGAGAAGGAAGGAAGGAA 60.181 47.826 0.00 0.00 0.00 3.36
1232 1662 2.383683 TGAGGAGAGAAGGAAGGAAGGA 59.616 50.000 0.00 0.00 0.00 3.36
1248 1678 1.341852 TCGAATGGTTTGTCGTGAGGA 59.658 47.619 0.00 0.00 38.41 3.71
1251 1681 1.529438 GCTTCGAATGGTTTGTCGTGA 59.471 47.619 0.00 0.00 38.41 4.35
1253 1683 0.872388 GGCTTCGAATGGTTTGTCGT 59.128 50.000 0.00 0.00 38.41 4.34
1254 1684 0.179225 CGGCTTCGAATGGTTTGTCG 60.179 55.000 0.00 0.00 38.62 4.35
1255 1685 0.872388 ACGGCTTCGAATGGTTTGTC 59.128 50.000 0.00 0.00 37.63 3.18
1306 1744 0.040958 GACGACAAACAGCAGCCAAG 60.041 55.000 0.00 0.00 0.00 3.61
1447 1888 1.132453 CTGTTGCCTGACTCATGCATG 59.868 52.381 21.07 21.07 35.22 4.06
1448 1889 1.460504 CTGTTGCCTGACTCATGCAT 58.539 50.000 9.50 0.00 35.22 3.96
1479 1925 2.343426 GCGGCTTTTCCCCAAGAGG 61.343 63.158 0.00 0.00 0.00 3.69
1624 2084 0.301687 CTGTGAGTGTGCGTGTGTTC 59.698 55.000 0.00 0.00 0.00 3.18
1772 2234 3.939592 GGGGTGCTCAAAACAGTCTATAC 59.060 47.826 0.00 0.00 0.00 1.47
1805 2274 6.413783 TTTAAAGACCAAGATCCCCAAAAC 57.586 37.500 0.00 0.00 0.00 2.43
1847 2567 4.470462 CTTTGCTGTTGAGAAATCTTCCG 58.530 43.478 0.00 0.00 0.00 4.30
1850 2570 6.469782 TTTCCTTTGCTGTTGAGAAATCTT 57.530 33.333 0.00 0.00 0.00 2.40
1936 2662 3.445450 TGCACTGCCAACTTCACTTTTTA 59.555 39.130 0.00 0.00 0.00 1.52
2208 2947 3.211865 ACAGTGCATGATTAGGCATCTG 58.788 45.455 18.08 18.08 46.18 2.90
2224 2963 6.341316 ACTTACATGGTGAGCTAATACAGTG 58.659 40.000 0.00 0.00 0.00 3.66
2226 2965 5.687730 CGACTTACATGGTGAGCTAATACAG 59.312 44.000 0.00 0.00 0.00 2.74
2227 2966 5.588240 CGACTTACATGGTGAGCTAATACA 58.412 41.667 0.00 0.00 0.00 2.29
2228 2967 4.444720 GCGACTTACATGGTGAGCTAATAC 59.555 45.833 0.00 0.00 0.00 1.89
2229 2968 4.500887 GGCGACTTACATGGTGAGCTAATA 60.501 45.833 0.00 0.00 0.00 0.98
2230 2969 3.458189 GCGACTTACATGGTGAGCTAAT 58.542 45.455 0.00 0.00 0.00 1.73
2231 2970 2.418197 GGCGACTTACATGGTGAGCTAA 60.418 50.000 0.00 0.00 0.00 3.09
2232 2971 1.136305 GGCGACTTACATGGTGAGCTA 59.864 52.381 0.00 0.00 0.00 3.32
2257 3000 4.030913 AGCTAGCTACAGGTGGAACAATA 58.969 43.478 17.69 0.00 44.16 1.90
2264 3011 0.462759 GGCAAGCTAGCTACAGGTGG 60.463 60.000 19.70 3.19 34.17 4.61
2283 3031 9.445786 ACAAAACATATCACGACAAGTTAAAAG 57.554 29.630 0.00 0.00 0.00 2.27
2311 3061 4.275936 ACGACACTTCCTTTTTCTTGATGG 59.724 41.667 0.00 0.00 0.00 3.51
2324 3074 4.801891 TGTACACAGATAACGACACTTCC 58.198 43.478 0.00 0.00 0.00 3.46
2325 3075 6.365247 ACAATGTACACAGATAACGACACTTC 59.635 38.462 0.00 0.00 0.00 3.01
2329 3079 6.020971 AGACAATGTACACAGATAACGACA 57.979 37.500 0.00 0.00 0.00 4.35
2369 3119 0.906282 TTTGGGACGGAGGGAGTACC 60.906 60.000 0.00 0.00 42.94 3.34
2370 3120 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2371 3121 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2372 3122 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2373 3123 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2374 3124 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2375 3125 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2376 3126 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2377 3127 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2378 3128 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2379 3129 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2380 3130 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2413 3163 9.563898 CACGTTTTAGTGTTAGATACATCTGTA 57.436 33.333 1.88 0.00 39.39 2.74
2414 3164 8.301720 TCACGTTTTAGTGTTAGATACATCTGT 58.698 33.333 1.88 0.00 42.40 3.41
2415 3165 8.683550 TCACGTTTTAGTGTTAGATACATCTG 57.316 34.615 1.88 0.00 42.40 2.90
2416 3166 9.871238 ATTCACGTTTTAGTGTTAGATACATCT 57.129 29.630 0.00 0.00 42.40 2.90
2423 3173 9.494479 CGTATCTATTCACGTTTTAGTGTTAGA 57.506 33.333 11.61 11.61 42.40 2.10
2436 3186 5.027206 ACATACGGACGTATCTATTCACG 57.973 43.478 13.86 4.19 39.07 4.35
2437 3187 7.095481 TGTCTACATACGGACGTATCTATTCAC 60.095 40.741 13.86 7.51 39.07 3.18
2438 3188 6.930722 TGTCTACATACGGACGTATCTATTCA 59.069 38.462 13.86 8.73 39.07 2.57
2439 3189 7.356641 TGTCTACATACGGACGTATCTATTC 57.643 40.000 13.86 6.65 39.07 1.75
2440 3190 7.734924 TTGTCTACATACGGACGTATCTATT 57.265 36.000 13.86 3.06 39.07 1.73
2441 3191 7.734924 TTTGTCTACATACGGACGTATCTAT 57.265 36.000 13.86 6.29 39.07 1.98
2442 3192 7.658982 AGATTTGTCTACATACGGACGTATCTA 59.341 37.037 13.86 6.97 39.07 1.98
2443 3193 6.485984 AGATTTGTCTACATACGGACGTATCT 59.514 38.462 13.86 6.18 39.07 1.98
2444 3194 6.666417 AGATTTGTCTACATACGGACGTATC 58.334 40.000 13.86 4.37 39.07 2.24
2445 3195 6.630444 AGATTTGTCTACATACGGACGTAT 57.370 37.500 11.25 11.25 41.49 3.06
2446 3196 7.495606 TCTTAGATTTGTCTACATACGGACGTA 59.504 37.037 7.05 7.05 35.45 3.57
2447 3197 4.978083 AGATTTGTCTACATACGGACGT 57.022 40.909 1.98 1.98 35.45 4.34
2448 3198 6.632035 GTCTTAGATTTGTCTACATACGGACG 59.368 42.308 0.00 0.00 35.45 4.79
2449 3199 7.478322 TGTCTTAGATTTGTCTACATACGGAC 58.522 38.462 0.00 0.00 0.00 4.79
2450 3200 7.634671 TGTCTTAGATTTGTCTACATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
2451 3201 8.188799 TCTTGTCTTAGATTTGTCTACATACGG 58.811 37.037 0.00 0.00 0.00 4.02
2452 3202 9.569167 TTCTTGTCTTAGATTTGTCTACATACG 57.431 33.333 0.00 0.00 0.00 3.06
2462 3212 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
2463 3213 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
2464 3214 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
2465 3215 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
2466 3216 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
2467 3217 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
2468 3218 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
2469 3219 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
2470 3220 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
2471 3221 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
2472 3222 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
2473 3223 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
2474 3224 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
2475 3225 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
2476 3226 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
2477 3227 3.838903 ACTACTCCCTCCGTCTCAAAATT 59.161 43.478 0.00 0.00 0.00 1.82
2478 3228 3.442076 ACTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
2479 3229 2.885616 ACTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
2480 3230 2.599408 ACTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
2481 3231 2.575279 AGTACTACTCCCTCCGTCTCAA 59.425 50.000 0.00 0.00 0.00 3.02
2482 3232 2.194859 AGTACTACTCCCTCCGTCTCA 58.805 52.381 0.00 0.00 0.00 3.27
2483 3233 3.280197 AAGTACTACTCCCTCCGTCTC 57.720 52.381 0.00 0.00 0.00 3.36
2484 3234 3.735720 AAAGTACTACTCCCTCCGTCT 57.264 47.619 0.00 0.00 0.00 4.18
2485 3235 3.509184 ACAAAAGTACTACTCCCTCCGTC 59.491 47.826 0.00 0.00 0.00 4.79
2486 3236 3.504375 ACAAAAGTACTACTCCCTCCGT 58.496 45.455 0.00 0.00 0.00 4.69
2487 3237 4.220163 AGAACAAAAGTACTACTCCCTCCG 59.780 45.833 0.00 0.00 0.00 4.63
2488 3238 5.480205 CAGAACAAAAGTACTACTCCCTCC 58.520 45.833 0.00 0.00 0.00 4.30
2489 3239 5.480205 CCAGAACAAAAGTACTACTCCCTC 58.520 45.833 0.00 0.00 0.00 4.30
2490 3240 4.262938 GCCAGAACAAAAGTACTACTCCCT 60.263 45.833 0.00 0.00 0.00 4.20
2491 3241 4.001652 GCCAGAACAAAAGTACTACTCCC 58.998 47.826 0.00 0.00 0.00 4.30
2492 3242 4.451435 GTGCCAGAACAAAAGTACTACTCC 59.549 45.833 0.00 0.00 0.00 3.85
2493 3243 5.177696 CAGTGCCAGAACAAAAGTACTACTC 59.822 44.000 0.00 0.00 0.00 2.59
2494 3244 5.057149 CAGTGCCAGAACAAAAGTACTACT 58.943 41.667 0.00 0.00 0.00 2.57
2495 3245 4.319549 GCAGTGCCAGAACAAAAGTACTAC 60.320 45.833 2.85 0.00 0.00 2.73
2496 3246 3.813166 GCAGTGCCAGAACAAAAGTACTA 59.187 43.478 2.85 0.00 0.00 1.82
2497 3247 2.618709 GCAGTGCCAGAACAAAAGTACT 59.381 45.455 2.85 0.00 0.00 2.73
2498 3248 2.357637 TGCAGTGCCAGAACAAAAGTAC 59.642 45.455 13.72 0.00 0.00 2.73
2499 3249 2.649190 TGCAGTGCCAGAACAAAAGTA 58.351 42.857 13.72 0.00 0.00 2.24
2500 3250 1.473258 TGCAGTGCCAGAACAAAAGT 58.527 45.000 13.72 0.00 0.00 2.66
2512 3262 2.611292 GAGGTGTTGAGATATGCAGTGC 59.389 50.000 8.58 8.58 0.00 4.40
2531 3282 5.996513 AGATTTGCTCTTACCATGCTATGAG 59.003 40.000 6.58 6.58 0.00 2.90
2547 3298 3.055385 TGAAAGTAGGCCGTAGATTTGCT 60.055 43.478 0.00 0.00 0.00 3.91
2548 3299 3.267483 TGAAAGTAGGCCGTAGATTTGC 58.733 45.455 0.00 0.00 0.00 3.68
2551 3302 5.416271 TCTTTGAAAGTAGGCCGTAGATT 57.584 39.130 4.68 0.00 0.00 2.40
2552 3303 5.416271 TTCTTTGAAAGTAGGCCGTAGAT 57.584 39.130 4.68 0.00 0.00 1.98
2553 3304 4.877378 TTCTTTGAAAGTAGGCCGTAGA 57.123 40.909 4.68 0.00 0.00 2.59
2554 3305 5.469084 ACTTTTCTTTGAAAGTAGGCCGTAG 59.531 40.000 4.68 0.00 45.38 3.51
2555 3306 5.370679 ACTTTTCTTTGAAAGTAGGCCGTA 58.629 37.500 4.68 0.00 45.38 4.02
2556 3307 4.204799 ACTTTTCTTTGAAAGTAGGCCGT 58.795 39.130 4.68 0.00 45.38 5.68
2557 3308 4.274950 TGACTTTTCTTTGAAAGTAGGCCG 59.725 41.667 4.68 0.00 46.73 6.13
2558 3309 5.767816 TGACTTTTCTTTGAAAGTAGGCC 57.232 39.130 4.68 0.00 46.73 5.19
2573 3324 2.039084 AGTCCGGCTCTGAATGACTTTT 59.961 45.455 0.00 0.00 32.61 2.27
2577 3328 2.025155 TCTAGTCCGGCTCTGAATGAC 58.975 52.381 0.00 0.00 0.00 3.06
2578 3329 2.025155 GTCTAGTCCGGCTCTGAATGA 58.975 52.381 0.00 0.00 0.00 2.57
2589 3340 2.686915 AGGGTCGTATTTGTCTAGTCCG 59.313 50.000 0.00 0.00 0.00 4.79
2592 3343 3.635836 GCCTAGGGTCGTATTTGTCTAGT 59.364 47.826 11.72 0.00 0.00 2.57
2593 3344 3.304525 CGCCTAGGGTCGTATTTGTCTAG 60.305 52.174 11.72 0.00 0.00 2.43
2594 3345 2.620115 CGCCTAGGGTCGTATTTGTCTA 59.380 50.000 11.72 0.00 0.00 2.59
2595 3346 1.407979 CGCCTAGGGTCGTATTTGTCT 59.592 52.381 11.72 0.00 0.00 3.41
2641 3395 0.883833 CATTTGAGGGCACACTGTCC 59.116 55.000 0.00 0.00 44.07 4.02
2650 3404 2.162408 GTGCAGTAGAACATTTGAGGGC 59.838 50.000 0.00 0.00 0.00 5.19
2655 3415 5.149273 GTGTGATGTGCAGTAGAACATTTG 58.851 41.667 0.00 0.00 44.28 2.32
2661 3421 1.977854 AGGGTGTGATGTGCAGTAGAA 59.022 47.619 0.00 0.00 0.00 2.10
2662 3422 1.644509 AGGGTGTGATGTGCAGTAGA 58.355 50.000 0.00 0.00 0.00 2.59
2679 3439 5.414454 TGGATTTGAGGTTTTGATACGAAGG 59.586 40.000 0.00 0.00 0.00 3.46
2681 3441 6.624861 GCATGGATTTGAGGTTTTGATACGAA 60.625 38.462 0.00 0.00 0.00 3.85
2889 3675 9.842775 AGCATATTTGTGAATTCTCTGAAGATA 57.157 29.630 7.05 0.69 0.00 1.98
2932 3721 1.156736 CAAGGGTACAAGTTCGCCTG 58.843 55.000 0.00 0.00 0.00 4.85
2938 3727 1.780919 AGAAGCCCAAGGGTACAAGTT 59.219 47.619 7.05 0.00 37.65 2.66
2951 3740 4.022068 TGAACACATGATTTTGAGAAGCCC 60.022 41.667 0.00 0.00 0.00 5.19
2975 3765 1.203441 ATGAGAGTGAAGGGGCAGCA 61.203 55.000 0.00 0.00 0.00 4.41
2989 3779 8.215736 ACAATATGATTGTCAAGGATGATGAGA 58.784 33.333 0.00 0.00 38.01 3.27
3001 3791 7.328982 GTGTCAATTTGCACAATATGATTGTCA 59.671 33.333 14.83 2.19 35.81 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.