Multiple sequence alignment - TraesCS5D01G246300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G246300 chr5D 100.000 2859 0 0 1 2859 354276522 354273664 0.000000e+00 5280.0
1 TraesCS5D01G246300 chr5D 80.645 124 22 2 65 188 504513778 504513899 8.430000e-16 95.3
2 TraesCS5D01G246300 chr5B 91.838 2242 79 42 656 2859 418559680 418557505 0.000000e+00 3031.0
3 TraesCS5D01G246300 chr5B 95.897 195 8 0 243 437 418559888 418559694 1.650000e-82 316.0
4 TraesCS5D01G246300 chr5B 85.714 189 25 2 1 188 709232057 709232244 6.250000e-47 198.0
5 TraesCS5D01G246300 chr5A 87.588 1426 90 40 699 2091 455282175 455280804 0.000000e+00 1572.0
6 TraesCS5D01G246300 chr5A 88.276 435 30 11 242 662 455292021 455291594 4.250000e-138 501.0
7 TraesCS5D01G246300 chr5A 77.193 798 65 52 2131 2859 455280800 455280051 9.740000e-95 357.0
8 TraesCS5D01G246300 chr5A 78.065 155 27 4 33 187 79164156 79164303 1.090000e-14 91.6
9 TraesCS5D01G246300 chr6D 79.389 131 23 4 64 190 463667882 463668012 3.920000e-14 89.8
10 TraesCS5D01G246300 chr3A 88.462 52 4 2 136 186 514050487 514050437 8.550000e-06 62.1
11 TraesCS5D01G246300 chrUn 92.857 42 2 1 142 183 12045045 12045085 3.080000e-05 60.2
12 TraesCS5D01G246300 chr7B 94.872 39 1 1 145 183 437369443 437369480 3.080000e-05 60.2
13 TraesCS5D01G246300 chr2A 94.595 37 2 0 142 178 8772529 8772493 1.110000e-04 58.4
14 TraesCS5D01G246300 chr2D 89.362 47 2 3 138 183 538915060 538915016 3.980000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G246300 chr5D 354273664 354276522 2858 True 5280.0 5280 100.0000 1 2859 1 chr5D.!!$R1 2858
1 TraesCS5D01G246300 chr5B 418557505 418559888 2383 True 1673.5 3031 93.8675 243 2859 2 chr5B.!!$R1 2616
2 TraesCS5D01G246300 chr5A 455280051 455282175 2124 True 964.5 1572 82.3905 699 2859 2 chr5A.!!$R2 2160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 473 0.031449 GCCTCTCTCACGTAGCCATC 59.969 60.0 0.00 0.0 0.0 3.51 F
1426 1452 0.035247 GGCCCACACGGTAATTACCA 60.035 55.0 29.56 0.0 46.8 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 1489 0.172803 GTGTCCTACTGCCACTACGG 59.827 60.0 0.0 0.0 38.11 4.02 R
2696 2834 0.758734 CAGAACCACTCCACACTCCA 59.241 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.618690 AGTGTGGAGGTTGCTTAGATC 57.381 47.619 0.00 0.00 0.00 2.75
22 23 3.177228 AGTGTGGAGGTTGCTTAGATCT 58.823 45.455 0.00 0.00 0.00 2.75
23 24 3.584848 AGTGTGGAGGTTGCTTAGATCTT 59.415 43.478 0.00 0.00 0.00 2.40
24 25 4.042187 AGTGTGGAGGTTGCTTAGATCTTT 59.958 41.667 0.00 0.00 0.00 2.52
25 26 4.762251 GTGTGGAGGTTGCTTAGATCTTTT 59.238 41.667 0.00 0.00 0.00 2.27
26 27 5.241728 GTGTGGAGGTTGCTTAGATCTTTTT 59.758 40.000 0.00 0.00 0.00 1.94
27 28 5.241506 TGTGGAGGTTGCTTAGATCTTTTTG 59.758 40.000 0.00 0.00 0.00 2.44
28 29 5.241728 GTGGAGGTTGCTTAGATCTTTTTGT 59.758 40.000 0.00 0.00 0.00 2.83
29 30 6.430000 GTGGAGGTTGCTTAGATCTTTTTGTA 59.570 38.462 0.00 0.00 0.00 2.41
30 31 7.121315 GTGGAGGTTGCTTAGATCTTTTTGTAT 59.879 37.037 0.00 0.00 0.00 2.29
31 32 7.669722 TGGAGGTTGCTTAGATCTTTTTGTATT 59.330 33.333 0.00 0.00 0.00 1.89
32 33 8.184848 GGAGGTTGCTTAGATCTTTTTGTATTC 58.815 37.037 0.00 0.00 0.00 1.75
33 34 8.870075 AGGTTGCTTAGATCTTTTTGTATTCT 57.130 30.769 0.00 0.00 0.00 2.40
34 35 9.301897 AGGTTGCTTAGATCTTTTTGTATTCTT 57.698 29.630 0.00 0.00 0.00 2.52
35 36 9.914131 GGTTGCTTAGATCTTTTTGTATTCTTT 57.086 29.630 0.00 0.00 0.00 2.52
39 40 9.267096 GCTTAGATCTTTTTGTATTCTTTGTCG 57.733 33.333 0.00 0.00 0.00 4.35
40 41 9.760660 CTTAGATCTTTTTGTATTCTTTGTCGG 57.239 33.333 0.00 0.00 0.00 4.79
41 42 7.745620 AGATCTTTTTGTATTCTTTGTCGGT 57.254 32.000 0.00 0.00 0.00 4.69
42 43 8.842358 AGATCTTTTTGTATTCTTTGTCGGTA 57.158 30.769 0.00 0.00 0.00 4.02
43 44 8.936864 AGATCTTTTTGTATTCTTTGTCGGTAG 58.063 33.333 0.00 0.00 0.00 3.18
44 45 6.894828 TCTTTTTGTATTCTTTGTCGGTAGC 58.105 36.000 0.00 0.00 0.00 3.58
45 46 6.483974 TCTTTTTGTATTCTTTGTCGGTAGCA 59.516 34.615 0.00 0.00 0.00 3.49
46 47 6.811253 TTTTGTATTCTTTGTCGGTAGCAT 57.189 33.333 0.00 0.00 0.00 3.79
47 48 7.908827 TTTTGTATTCTTTGTCGGTAGCATA 57.091 32.000 0.00 0.00 0.00 3.14
48 49 7.534085 TTTGTATTCTTTGTCGGTAGCATAG 57.466 36.000 0.00 0.00 0.00 2.23
49 50 6.216801 TGTATTCTTTGTCGGTAGCATAGT 57.783 37.500 0.00 0.00 0.00 2.12
50 51 6.270815 TGTATTCTTTGTCGGTAGCATAGTC 58.729 40.000 0.00 0.00 0.00 2.59
51 52 3.416119 TCTTTGTCGGTAGCATAGTCG 57.584 47.619 0.00 0.00 0.00 4.18
52 53 2.751259 TCTTTGTCGGTAGCATAGTCGT 59.249 45.455 0.00 0.00 0.00 4.34
53 54 2.554806 TTGTCGGTAGCATAGTCGTG 57.445 50.000 0.00 0.00 0.00 4.35
54 55 1.456296 TGTCGGTAGCATAGTCGTGT 58.544 50.000 0.00 0.00 0.00 4.49
55 56 1.131693 TGTCGGTAGCATAGTCGTGTG 59.868 52.381 0.00 0.00 0.00 3.82
56 57 0.099968 TCGGTAGCATAGTCGTGTGC 59.900 55.000 0.00 0.00 40.99 4.57
57 58 1.200474 CGGTAGCATAGTCGTGTGCG 61.200 60.000 0.00 0.00 45.12 5.34
58 59 0.179145 GGTAGCATAGTCGTGTGCGT 60.179 55.000 0.00 0.00 45.12 5.24
59 60 1.625616 GTAGCATAGTCGTGTGCGTT 58.374 50.000 0.00 0.00 45.12 4.84
60 61 1.582502 GTAGCATAGTCGTGTGCGTTC 59.417 52.381 0.00 0.00 45.12 3.95
61 62 0.243907 AGCATAGTCGTGTGCGTTCT 59.756 50.000 0.00 0.00 45.12 3.01
62 63 1.471287 AGCATAGTCGTGTGCGTTCTA 59.529 47.619 0.00 0.00 45.12 2.10
63 64 1.582502 GCATAGTCGTGTGCGTTCTAC 59.417 52.381 0.00 0.00 39.49 2.59
64 65 1.838345 CATAGTCGTGTGCGTTCTACG 59.162 52.381 0.00 0.00 45.88 3.51
65 66 0.867746 TAGTCGTGTGCGTTCTACGT 59.132 50.000 0.00 0.00 44.73 3.57
66 67 0.659417 AGTCGTGTGCGTTCTACGTG 60.659 55.000 0.00 0.00 44.73 4.49
67 68 0.658244 GTCGTGTGCGTTCTACGTGA 60.658 55.000 0.00 0.00 44.73 4.35
68 69 0.239082 TCGTGTGCGTTCTACGTGAT 59.761 50.000 0.00 0.00 44.73 3.06
69 70 0.633733 CGTGTGCGTTCTACGTGATC 59.366 55.000 0.00 0.00 44.73 2.92
70 71 0.989890 GTGTGCGTTCTACGTGATCC 59.010 55.000 0.00 0.00 44.73 3.36
71 72 0.455464 TGTGCGTTCTACGTGATCCG 60.455 55.000 0.00 0.00 44.73 4.18
72 73 0.179181 GTGCGTTCTACGTGATCCGA 60.179 55.000 0.00 0.00 44.73 4.55
73 74 0.736636 TGCGTTCTACGTGATCCGAT 59.263 50.000 0.00 0.00 44.73 4.18
74 75 1.133598 TGCGTTCTACGTGATCCGATT 59.866 47.619 0.00 0.00 44.73 3.34
75 76 2.355444 TGCGTTCTACGTGATCCGATTA 59.645 45.455 0.00 0.00 44.73 1.75
76 77 3.004002 TGCGTTCTACGTGATCCGATTAT 59.996 43.478 0.00 0.00 44.73 1.28
77 78 3.602915 GCGTTCTACGTGATCCGATTATC 59.397 47.826 0.00 0.00 44.73 1.75
78 79 4.613167 GCGTTCTACGTGATCCGATTATCT 60.613 45.833 0.00 0.00 44.73 1.98
79 80 5.080731 CGTTCTACGTGATCCGATTATCTC 58.919 45.833 0.00 0.00 40.70 2.75
80 81 6.164716 CGTTCTACGTGATCCGATTATCTCG 61.165 48.000 0.00 12.21 44.34 4.04
81 82 8.240639 CGTTCTACGTGATCCGATTATCTCGA 62.241 46.154 17.49 0.00 42.53 4.04
82 83 9.891528 CGTTCTACGTGATCCGATTATCTCGAG 62.892 48.148 5.93 5.93 42.53 4.04
93 94 4.551388 GATTATCTCGAGATCGGCTTTGT 58.449 43.478 30.49 7.91 40.29 2.83
94 95 5.700846 GATTATCTCGAGATCGGCTTTGTA 58.299 41.667 30.49 7.91 40.29 2.41
95 96 5.509716 TTATCTCGAGATCGGCTTTGTAA 57.490 39.130 30.49 13.56 40.29 2.41
96 97 3.422417 TCTCGAGATCGGCTTTGTAAG 57.578 47.619 12.08 0.00 40.29 2.34
97 98 3.014623 TCTCGAGATCGGCTTTGTAAGA 58.985 45.455 12.08 0.00 40.29 2.10
98 99 3.065510 TCTCGAGATCGGCTTTGTAAGAG 59.934 47.826 12.08 0.00 40.29 2.85
99 100 1.855360 CGAGATCGGCTTTGTAAGAGC 59.145 52.381 0.00 0.00 39.41 4.09
100 101 1.855360 GAGATCGGCTTTGTAAGAGCG 59.145 52.381 0.00 0.00 41.03 5.03
101 102 0.301987 GATCGGCTTTGTAAGAGCGC 59.698 55.000 0.00 0.00 41.03 5.92
102 103 1.090052 ATCGGCTTTGTAAGAGCGCC 61.090 55.000 2.29 0.00 41.03 6.53
103 104 2.032634 CGGCTTTGTAAGAGCGCCA 61.033 57.895 2.29 0.00 41.03 5.69
104 105 1.502190 GGCTTTGTAAGAGCGCCAC 59.498 57.895 2.29 0.00 41.03 5.01
105 106 1.502190 GCTTTGTAAGAGCGCCACC 59.498 57.895 2.29 0.00 0.00 4.61
106 107 0.955919 GCTTTGTAAGAGCGCCACCT 60.956 55.000 2.29 0.00 0.00 4.00
107 108 1.079503 CTTTGTAAGAGCGCCACCTC 58.920 55.000 2.29 0.00 0.00 3.85
108 109 0.394938 TTTGTAAGAGCGCCACCTCA 59.605 50.000 2.29 0.00 34.26 3.86
109 110 0.613260 TTGTAAGAGCGCCACCTCAT 59.387 50.000 2.29 0.00 34.26 2.90
110 111 0.175760 TGTAAGAGCGCCACCTCATC 59.824 55.000 2.29 0.00 34.26 2.92
111 112 0.175760 GTAAGAGCGCCACCTCATCA 59.824 55.000 2.29 0.00 34.26 3.07
112 113 1.123077 TAAGAGCGCCACCTCATCAT 58.877 50.000 2.29 0.00 34.26 2.45
113 114 0.179062 AAGAGCGCCACCTCATCATC 60.179 55.000 2.29 0.00 34.26 2.92
114 115 1.047596 AGAGCGCCACCTCATCATCT 61.048 55.000 2.29 0.00 34.26 2.90
115 116 0.179062 GAGCGCCACCTCATCATCTT 60.179 55.000 2.29 0.00 0.00 2.40
116 117 1.069204 GAGCGCCACCTCATCATCTTA 59.931 52.381 2.29 0.00 0.00 2.10
117 118 1.696336 AGCGCCACCTCATCATCTTAT 59.304 47.619 2.29 0.00 0.00 1.73
118 119 2.899900 AGCGCCACCTCATCATCTTATA 59.100 45.455 2.29 0.00 0.00 0.98
119 120 3.517100 AGCGCCACCTCATCATCTTATAT 59.483 43.478 2.29 0.00 0.00 0.86
120 121 3.868077 GCGCCACCTCATCATCTTATATC 59.132 47.826 0.00 0.00 0.00 1.63
121 122 4.108336 CGCCACCTCATCATCTTATATCG 58.892 47.826 0.00 0.00 0.00 2.92
122 123 4.380973 CGCCACCTCATCATCTTATATCGT 60.381 45.833 0.00 0.00 0.00 3.73
123 124 5.482908 GCCACCTCATCATCTTATATCGTT 58.517 41.667 0.00 0.00 0.00 3.85
124 125 5.578727 GCCACCTCATCATCTTATATCGTTC 59.421 44.000 0.00 0.00 0.00 3.95
125 126 5.802451 CCACCTCATCATCTTATATCGTTCG 59.198 44.000 0.00 0.00 0.00 3.95
126 127 5.802451 CACCTCATCATCTTATATCGTTCGG 59.198 44.000 0.00 0.00 0.00 4.30
127 128 4.800993 CCTCATCATCTTATATCGTTCGGC 59.199 45.833 0.00 0.00 0.00 5.54
128 129 4.744570 TCATCATCTTATATCGTTCGGCC 58.255 43.478 0.00 0.00 0.00 6.13
129 130 4.219725 TCATCATCTTATATCGTTCGGCCA 59.780 41.667 2.24 0.00 0.00 5.36
130 131 4.801330 TCATCTTATATCGTTCGGCCAT 57.199 40.909 2.24 0.00 0.00 4.40
131 132 4.494484 TCATCTTATATCGTTCGGCCATG 58.506 43.478 2.24 0.00 0.00 3.66
132 133 4.021456 TCATCTTATATCGTTCGGCCATGT 60.021 41.667 2.24 0.00 0.00 3.21
133 134 5.184287 TCATCTTATATCGTTCGGCCATGTA 59.816 40.000 2.24 0.00 0.00 2.29
134 135 4.801891 TCTTATATCGTTCGGCCATGTAC 58.198 43.478 2.24 0.00 0.00 2.90
135 136 4.521639 TCTTATATCGTTCGGCCATGTACT 59.478 41.667 2.24 0.00 0.00 2.73
136 137 3.746045 ATATCGTTCGGCCATGTACTT 57.254 42.857 2.24 0.00 0.00 2.24
137 138 2.396590 ATCGTTCGGCCATGTACTTT 57.603 45.000 2.24 0.00 0.00 2.66
138 139 1.717194 TCGTTCGGCCATGTACTTTC 58.283 50.000 2.24 0.00 0.00 2.62
139 140 1.274167 TCGTTCGGCCATGTACTTTCT 59.726 47.619 2.24 0.00 0.00 2.52
140 141 2.492881 TCGTTCGGCCATGTACTTTCTA 59.507 45.455 2.24 0.00 0.00 2.10
141 142 3.131577 TCGTTCGGCCATGTACTTTCTAT 59.868 43.478 2.24 0.00 0.00 1.98
142 143 3.245284 CGTTCGGCCATGTACTTTCTATG 59.755 47.826 2.24 0.00 0.00 2.23
143 144 3.469008 TCGGCCATGTACTTTCTATGG 57.531 47.619 2.24 5.06 43.31 2.74
144 145 2.769663 TCGGCCATGTACTTTCTATGGT 59.230 45.455 2.24 0.00 42.60 3.55
145 146 2.872245 CGGCCATGTACTTTCTATGGTG 59.128 50.000 2.24 1.69 42.60 4.17
146 147 3.214328 GGCCATGTACTTTCTATGGTGG 58.786 50.000 0.00 0.00 42.60 4.61
147 148 3.371595 GGCCATGTACTTTCTATGGTGGT 60.372 47.826 0.00 0.00 42.60 4.16
148 149 4.270008 GCCATGTACTTTCTATGGTGGTT 58.730 43.478 10.05 0.00 42.60 3.67
149 150 4.335594 GCCATGTACTTTCTATGGTGGTTC 59.664 45.833 10.05 0.00 42.60 3.62
150 151 4.881850 CCATGTACTTTCTATGGTGGTTCC 59.118 45.833 0.00 0.00 37.24 3.62
151 152 5.339200 CCATGTACTTTCTATGGTGGTTCCT 60.339 44.000 0.00 0.00 37.24 3.36
152 153 5.836024 TGTACTTTCTATGGTGGTTCCTT 57.164 39.130 0.00 0.00 37.07 3.36
153 154 6.195600 TGTACTTTCTATGGTGGTTCCTTT 57.804 37.500 0.00 0.00 37.07 3.11
154 155 7.319052 TGTACTTTCTATGGTGGTTCCTTTA 57.681 36.000 0.00 0.00 37.07 1.85
155 156 7.924541 TGTACTTTCTATGGTGGTTCCTTTAT 58.075 34.615 0.00 0.00 37.07 1.40
156 157 9.049050 TGTACTTTCTATGGTGGTTCCTTTATA 57.951 33.333 0.00 0.00 37.07 0.98
165 166 7.972832 TGGTGGTTCCTTTATATATAAAGCG 57.027 36.000 28.73 23.13 44.85 4.68
166 167 6.938030 TGGTGGTTCCTTTATATATAAAGCGG 59.062 38.462 28.73 21.19 44.85 5.52
167 168 6.373495 GGTGGTTCCTTTATATATAAAGCGGG 59.627 42.308 28.73 20.66 44.85 6.13
168 169 6.373495 GTGGTTCCTTTATATATAAAGCGGGG 59.627 42.308 28.73 20.39 44.85 5.73
169 170 5.356190 GGTTCCTTTATATATAAAGCGGGGC 59.644 44.000 28.73 18.96 44.85 5.80
170 171 4.761975 TCCTTTATATATAAAGCGGGGCG 58.238 43.478 28.73 18.65 44.85 6.13
171 172 4.467082 TCCTTTATATATAAAGCGGGGCGA 59.533 41.667 28.73 20.07 44.85 5.54
172 173 5.046448 TCCTTTATATATAAAGCGGGGCGAA 60.046 40.000 28.73 10.71 44.85 4.70
173 174 5.644636 CCTTTATATATAAAGCGGGGCGAAA 59.355 40.000 28.73 4.75 44.85 3.46
174 175 6.183360 CCTTTATATATAAAGCGGGGCGAAAG 60.183 42.308 28.73 14.22 44.85 2.62
190 191 3.872354 CGAAAGCATGTTTTGAGAACGA 58.128 40.909 12.62 0.00 0.00 3.85
191 192 3.659444 CGAAAGCATGTTTTGAGAACGAC 59.341 43.478 12.62 0.00 0.00 4.34
192 193 3.626028 AAGCATGTTTTGAGAACGACC 57.374 42.857 0.00 0.00 0.00 4.79
193 194 2.851195 AGCATGTTTTGAGAACGACCT 58.149 42.857 0.00 0.00 0.00 3.85
194 195 3.214328 AGCATGTTTTGAGAACGACCTT 58.786 40.909 0.00 0.00 0.00 3.50
195 196 3.251004 AGCATGTTTTGAGAACGACCTTC 59.749 43.478 0.00 0.00 0.00 3.46
196 197 3.609409 GCATGTTTTGAGAACGACCTTCC 60.609 47.826 0.00 0.00 0.00 3.46
197 198 2.206750 TGTTTTGAGAACGACCTTCCG 58.793 47.619 0.00 0.00 0.00 4.30
198 199 2.159071 TGTTTTGAGAACGACCTTCCGA 60.159 45.455 0.00 0.00 0.00 4.55
199 200 3.064931 GTTTTGAGAACGACCTTCCGAT 58.935 45.455 0.00 0.00 0.00 4.18
200 201 2.363788 TTGAGAACGACCTTCCGATG 57.636 50.000 0.00 0.00 0.00 3.84
201 202 0.108804 TGAGAACGACCTTCCGATGC 60.109 55.000 0.00 0.00 0.00 3.91
202 203 0.108804 GAGAACGACCTTCCGATGCA 60.109 55.000 0.00 0.00 0.00 3.96
203 204 0.537188 AGAACGACCTTCCGATGCAT 59.463 50.000 0.00 0.00 0.00 3.96
204 205 0.652592 GAACGACCTTCCGATGCATG 59.347 55.000 2.46 0.00 0.00 4.06
205 206 0.036388 AACGACCTTCCGATGCATGT 60.036 50.000 2.46 0.00 0.00 3.21
206 207 0.740868 ACGACCTTCCGATGCATGTG 60.741 55.000 2.46 0.00 0.00 3.21
207 208 1.723870 GACCTTCCGATGCATGTGC 59.276 57.895 2.46 0.00 42.50 4.57
220 221 1.652124 GCATGTGCATTTCTTTCAGCG 59.348 47.619 0.00 0.00 41.59 5.18
221 222 2.256174 CATGTGCATTTCTTTCAGCGG 58.744 47.619 0.00 0.00 0.00 5.52
222 223 0.597568 TGTGCATTTCTTTCAGCGGG 59.402 50.000 0.00 0.00 0.00 6.13
223 224 0.109132 GTGCATTTCTTTCAGCGGGG 60.109 55.000 0.00 0.00 0.00 5.73
224 225 0.539438 TGCATTTCTTTCAGCGGGGT 60.539 50.000 0.00 0.00 0.00 4.95
225 226 0.603065 GCATTTCTTTCAGCGGGGTT 59.397 50.000 0.00 0.00 0.00 4.11
226 227 1.000843 GCATTTCTTTCAGCGGGGTTT 59.999 47.619 0.00 0.00 0.00 3.27
227 228 2.676076 CATTTCTTTCAGCGGGGTTTG 58.324 47.619 0.00 0.00 0.00 2.93
228 229 0.387565 TTTCTTTCAGCGGGGTTTGC 59.612 50.000 0.00 0.00 0.00 3.68
229 230 1.460273 TTCTTTCAGCGGGGTTTGCC 61.460 55.000 0.00 0.00 0.00 4.52
230 231 3.267597 CTTTCAGCGGGGTTTGCCG 62.268 63.158 0.00 0.00 34.97 5.69
231 232 4.572571 TTCAGCGGGGTTTGCCGT 62.573 61.111 0.00 0.00 34.97 5.68
236 237 3.666253 CGGGGTTTGCCGTGGAAC 61.666 66.667 0.00 0.00 34.97 3.62
237 238 2.519780 GGGGTTTGCCGTGGAACA 60.520 61.111 0.00 0.00 35.74 3.18
238 239 2.128507 GGGGTTTGCCGTGGAACAA 61.129 57.895 0.00 0.00 44.16 2.83
239 240 1.362355 GGGTTTGCCGTGGAACAAG 59.638 57.895 0.00 0.00 44.16 3.16
255 256 5.176592 GGAACAAGGTAGTGAAGTCATACC 58.823 45.833 9.90 9.90 39.44 2.73
293 294 0.320683 CCGACACTGTTCCTGCATCA 60.321 55.000 0.00 0.00 0.00 3.07
306 307 2.699910 GCATCAAGCGACAAACGTG 58.300 52.632 0.00 0.00 44.60 4.49
308 309 1.662360 CATCAAGCGACAAACGTGTG 58.338 50.000 3.56 3.56 44.60 3.82
314 315 1.556484 CGACAAACGTGTGACGACC 59.444 57.895 23.22 1.54 46.05 4.79
419 420 1.746517 GTCACGTCCCTGGAACTGT 59.253 57.895 0.00 0.00 0.00 3.55
437 438 1.227031 TAGGCCGGAAACATACGCG 60.227 57.895 5.05 3.53 0.00 6.01
438 439 4.232248 GGCCGGAAACATACGCGC 62.232 66.667 5.05 0.00 0.00 6.86
439 440 4.232248 GCCGGAAACATACGCGCC 62.232 66.667 5.05 0.00 0.00 6.53
440 441 2.816083 CCGGAAACATACGCGCCA 60.816 61.111 5.73 0.00 0.00 5.69
441 442 2.398036 CGGAAACATACGCGCCAC 59.602 61.111 5.73 0.00 0.00 5.01
442 443 2.384309 CGGAAACATACGCGCCACA 61.384 57.895 5.73 0.00 0.00 4.17
445 446 1.135517 GGAAACATACGCGCCACATTT 60.136 47.619 5.73 0.08 0.00 2.32
446 447 2.096174 GGAAACATACGCGCCACATTTA 59.904 45.455 5.73 0.00 0.00 1.40
447 448 3.242936 GGAAACATACGCGCCACATTTAT 60.243 43.478 5.73 0.00 0.00 1.40
448 449 3.332761 AACATACGCGCCACATTTATG 57.667 42.857 5.73 7.58 0.00 1.90
450 451 2.543848 ACATACGCGCCACATTTATGAG 59.456 45.455 5.73 0.00 0.00 2.90
451 452 1.577468 TACGCGCCACATTTATGAGG 58.423 50.000 5.73 2.26 40.86 3.86
452 453 0.107897 ACGCGCCACATTTATGAGGA 60.108 50.000 5.73 0.00 40.43 3.71
453 454 0.583438 CGCGCCACATTTATGAGGAG 59.417 55.000 0.00 7.77 40.43 3.69
455 456 0.947244 CGCCACATTTATGAGGAGCC 59.053 55.000 9.94 0.00 40.43 4.70
456 457 1.475751 CGCCACATTTATGAGGAGCCT 60.476 52.381 9.94 0.00 40.43 4.58
457 458 2.225467 GCCACATTTATGAGGAGCCTC 58.775 52.381 9.61 9.61 40.43 4.70
458 459 2.158696 GCCACATTTATGAGGAGCCTCT 60.159 50.000 16.87 6.02 40.43 3.69
459 460 3.737850 CCACATTTATGAGGAGCCTCTC 58.262 50.000 16.87 0.00 40.43 3.20
460 461 3.390639 CCACATTTATGAGGAGCCTCTCT 59.609 47.826 16.87 7.56 40.43 3.10
461 462 4.502950 CCACATTTATGAGGAGCCTCTCTC 60.503 50.000 16.87 5.56 40.43 3.20
462 463 4.100653 CACATTTATGAGGAGCCTCTCTCA 59.899 45.833 16.87 13.11 43.70 3.27
463 464 4.100808 ACATTTATGAGGAGCCTCTCTCAC 59.899 45.833 16.87 0.00 43.70 3.51
464 465 1.974265 TATGAGGAGCCTCTCTCACG 58.026 55.000 16.87 0.00 43.70 4.35
465 466 0.033601 ATGAGGAGCCTCTCTCACGT 60.034 55.000 16.87 0.00 43.70 4.49
466 467 0.618981 TGAGGAGCCTCTCTCACGTA 59.381 55.000 16.87 0.00 43.70 3.57
467 468 1.305201 GAGGAGCCTCTCTCACGTAG 58.695 60.000 9.28 0.00 43.70 3.51
468 469 0.750182 AGGAGCCTCTCTCACGTAGC 60.750 60.000 0.00 0.00 43.70 3.58
469 470 1.730451 GGAGCCTCTCTCACGTAGCC 61.730 65.000 0.00 0.00 43.70 3.93
470 471 1.000771 AGCCTCTCTCACGTAGCCA 60.001 57.895 0.00 0.00 0.00 4.75
471 472 0.396417 AGCCTCTCTCACGTAGCCAT 60.396 55.000 0.00 0.00 0.00 4.40
472 473 0.031449 GCCTCTCTCACGTAGCCATC 59.969 60.000 0.00 0.00 0.00 3.51
473 474 0.671251 CCTCTCTCACGTAGCCATCC 59.329 60.000 0.00 0.00 0.00 3.51
474 475 1.393603 CTCTCTCACGTAGCCATCCA 58.606 55.000 0.00 0.00 0.00 3.41
475 476 1.066303 CTCTCTCACGTAGCCATCCAC 59.934 57.143 0.00 0.00 0.00 4.02
476 477 0.248661 CTCTCACGTAGCCATCCACG 60.249 60.000 0.00 0.00 43.63 4.94
477 478 1.226974 CTCACGTAGCCATCCACGG 60.227 63.158 0.00 0.00 42.35 4.94
478 479 1.663379 CTCACGTAGCCATCCACGGA 61.663 60.000 0.00 0.00 42.35 4.69
479 480 1.040893 TCACGTAGCCATCCACGGAT 61.041 55.000 0.00 0.00 42.35 4.18
480 481 0.597637 CACGTAGCCATCCACGGATC 60.598 60.000 0.00 0.00 42.35 3.36
481 482 1.040893 ACGTAGCCATCCACGGATCA 61.041 55.000 0.00 0.00 42.35 2.92
482 483 0.318441 CGTAGCCATCCACGGATCAT 59.682 55.000 0.00 0.00 34.57 2.45
483 484 1.800805 GTAGCCATCCACGGATCATG 58.199 55.000 0.00 0.00 31.62 3.07
484 485 0.686789 TAGCCATCCACGGATCATGG 59.313 55.000 8.63 8.63 38.71 3.66
488 489 4.470764 TCCACGGATCATGGACCA 57.529 55.556 12.73 0.00 41.47 4.02
489 490 2.929467 TCCACGGATCATGGACCAT 58.071 52.632 12.73 0.00 41.47 3.55
490 491 0.758734 TCCACGGATCATGGACCATC 59.241 55.000 12.73 0.00 41.47 3.51
491 492 0.250467 CCACGGATCATGGACCATCC 60.250 60.000 3.21 2.99 39.87 3.51
492 493 0.761187 CACGGATCATGGACCATCCT 59.239 55.000 3.21 0.00 37.08 3.24
493 494 1.051812 ACGGATCATGGACCATCCTC 58.948 55.000 3.21 4.17 37.08 3.71
494 495 0.322975 CGGATCATGGACCATCCTCC 59.677 60.000 17.06 17.06 37.08 4.30
495 496 1.739750 GGATCATGGACCATCCTCCT 58.260 55.000 18.78 0.00 37.46 3.69
496 497 1.627834 GGATCATGGACCATCCTCCTC 59.372 57.143 18.78 7.00 37.46 3.71
497 498 1.627834 GATCATGGACCATCCTCCTCC 59.372 57.143 3.21 0.00 37.46 4.30
498 499 0.343018 TCATGGACCATCCTCCTCCA 59.657 55.000 3.21 0.00 37.46 3.86
499 500 0.763652 CATGGACCATCCTCCTCCAG 59.236 60.000 3.21 0.00 37.51 3.86
500 501 1.059006 ATGGACCATCCTCCTCCAGC 61.059 60.000 0.00 0.00 37.51 4.85
501 502 2.801631 GGACCATCCTCCTCCAGCG 61.802 68.421 0.00 0.00 32.53 5.18
502 503 3.453070 GACCATCCTCCTCCAGCGC 62.453 68.421 0.00 0.00 0.00 5.92
503 504 4.247380 CCATCCTCCTCCAGCGCC 62.247 72.222 2.29 0.00 0.00 6.53
504 505 4.247380 CATCCTCCTCCAGCGCCC 62.247 72.222 2.29 0.00 0.00 6.13
511 512 3.801997 CTCCAGCGCCCCTCCAAT 61.802 66.667 2.29 0.00 0.00 3.16
512 513 4.113815 TCCAGCGCCCCTCCAATG 62.114 66.667 2.29 0.00 0.00 2.82
514 515 4.113815 CAGCGCCCCTCCAATGGA 62.114 66.667 2.29 0.48 0.00 3.41
523 524 2.983433 CTCCAATGGAGCTAGCACG 58.017 57.895 17.25 0.00 43.29 5.34
524 525 1.153369 TCCAATGGAGCTAGCACGC 60.153 57.895 18.83 5.58 0.00 5.34
525 526 1.153289 CCAATGGAGCTAGCACGCT 60.153 57.895 18.83 0.00 44.33 5.07
539 540 4.111016 CGCTCCACGTACGGCAGA 62.111 66.667 21.06 11.69 36.87 4.26
540 541 2.494918 GCTCCACGTACGGCAGAT 59.505 61.111 21.06 0.00 0.00 2.90
541 542 1.589196 GCTCCACGTACGGCAGATC 60.589 63.158 21.06 4.98 0.00 2.75
542 543 2.005960 GCTCCACGTACGGCAGATCT 62.006 60.000 21.06 0.00 0.00 2.75
543 544 1.306148 CTCCACGTACGGCAGATCTA 58.694 55.000 21.06 0.00 0.00 1.98
544 545 1.264557 CTCCACGTACGGCAGATCTAG 59.735 57.143 21.06 1.62 0.00 2.43
545 546 1.134310 TCCACGTACGGCAGATCTAGA 60.134 52.381 21.06 0.00 0.00 2.43
546 547 1.880675 CCACGTACGGCAGATCTAGAT 59.119 52.381 21.06 4.47 0.00 1.98
547 548 2.350868 CCACGTACGGCAGATCTAGATG 60.351 54.545 21.06 0.00 0.00 2.90
548 549 1.267261 ACGTACGGCAGATCTAGATGC 59.733 52.381 21.06 9.99 41.80 3.91
549 550 1.537638 CGTACGGCAGATCTAGATGCT 59.462 52.381 10.74 4.49 42.19 3.79
550 551 2.742589 CGTACGGCAGATCTAGATGCTA 59.257 50.000 10.74 0.00 42.19 3.49
551 552 3.425094 CGTACGGCAGATCTAGATGCTAC 60.425 52.174 10.74 8.49 42.19 3.58
552 553 1.537638 ACGGCAGATCTAGATGCTACG 59.462 52.381 10.74 11.90 42.19 3.51
553 554 1.730772 CGGCAGATCTAGATGCTACGC 60.731 57.143 10.74 7.71 42.19 4.42
554 555 1.403514 GGCAGATCTAGATGCTACGCC 60.404 57.143 10.74 12.34 42.19 5.68
555 556 1.730772 GCAGATCTAGATGCTACGCCG 60.731 57.143 10.74 0.00 39.38 6.46
556 557 1.135546 CAGATCTAGATGCTACGCCGG 60.136 57.143 10.74 0.00 0.00 6.13
557 558 0.456995 GATCTAGATGCTACGCCGGC 60.457 60.000 19.07 19.07 0.00 6.13
558 559 1.878656 ATCTAGATGCTACGCCGGCC 61.879 60.000 23.46 7.25 0.00 6.13
559 560 2.520982 TAGATGCTACGCCGGCCT 60.521 61.111 23.46 12.81 0.00 5.19
560 561 2.088674 CTAGATGCTACGCCGGCCTT 62.089 60.000 23.46 11.11 0.00 4.35
561 562 2.363711 TAGATGCTACGCCGGCCTTG 62.364 60.000 23.46 11.94 0.00 3.61
562 563 3.733344 GATGCTACGCCGGCCTTGA 62.733 63.158 23.46 2.01 0.00 3.02
563 564 4.752879 TGCTACGCCGGCCTTGAC 62.753 66.667 23.46 7.57 0.00 3.18
570 571 3.055719 CCGGCCTTGACGCACATT 61.056 61.111 0.00 0.00 29.68 2.71
571 572 2.480555 CGGCCTTGACGCACATTC 59.519 61.111 0.00 0.00 0.00 2.67
572 573 2.877691 GGCCTTGACGCACATTCC 59.122 61.111 0.00 0.00 0.00 3.01
573 574 2.480555 GCCTTGACGCACATTCCG 59.519 61.111 0.00 0.00 0.00 4.30
574 575 2.480555 CCTTGACGCACATTCCGC 59.519 61.111 0.00 0.00 0.00 5.54
581 582 2.709475 GCACATTCCGCGTCCATC 59.291 61.111 4.92 0.00 0.00 3.51
582 583 2.823829 GCACATTCCGCGTCCATCC 61.824 63.158 4.92 0.00 0.00 3.51
583 584 2.202878 ACATTCCGCGTCCATCCG 60.203 61.111 4.92 0.00 0.00 4.18
584 585 2.202878 CATTCCGCGTCCATCCGT 60.203 61.111 4.92 0.00 0.00 4.69
585 586 2.106332 ATTCCGCGTCCATCCGTC 59.894 61.111 4.92 0.00 0.00 4.79
586 587 3.441011 ATTCCGCGTCCATCCGTCC 62.441 63.158 4.92 0.00 0.00 4.79
590 591 4.867599 GCGTCCATCCGTCCGTCC 62.868 72.222 0.00 0.00 0.00 4.79
591 592 4.547905 CGTCCATCCGTCCGTCCG 62.548 72.222 0.00 0.00 0.00 4.79
592 593 3.446570 GTCCATCCGTCCGTCCGT 61.447 66.667 0.00 0.00 0.00 4.69
593 594 3.136123 TCCATCCGTCCGTCCGTC 61.136 66.667 0.00 0.00 0.00 4.79
594 595 4.203076 CCATCCGTCCGTCCGTCC 62.203 72.222 0.00 0.00 0.00 4.79
595 596 4.547905 CATCCGTCCGTCCGTCCG 62.548 72.222 0.00 0.00 0.00 4.79
601 602 4.746309 TCCGTCCGTCCGTCCCAT 62.746 66.667 0.00 0.00 0.00 4.00
602 603 4.508128 CCGTCCGTCCGTCCCATG 62.508 72.222 0.00 0.00 0.00 3.66
604 605 4.077184 GTCCGTCCGTCCCATGCA 62.077 66.667 0.00 0.00 0.00 3.96
605 606 4.077184 TCCGTCCGTCCCATGCAC 62.077 66.667 0.00 0.00 0.00 4.57
606 607 4.386951 CCGTCCGTCCCATGCACA 62.387 66.667 0.00 0.00 0.00 4.57
607 608 3.118454 CGTCCGTCCCATGCACAC 61.118 66.667 0.00 0.00 0.00 3.82
608 609 3.118454 GTCCGTCCCATGCACACG 61.118 66.667 0.00 0.00 0.00 4.49
615 616 4.029186 CCATGCACACGCGCAGTT 62.029 61.111 5.73 0.00 46.99 3.16
616 617 2.051076 CATGCACACGCGCAGTTT 60.051 55.556 5.73 0.00 46.99 2.66
617 618 2.076628 CATGCACACGCGCAGTTTC 61.077 57.895 5.73 0.11 46.99 2.78
618 619 3.254014 ATGCACACGCGCAGTTTCC 62.254 57.895 5.73 0.00 46.99 3.13
619 620 3.947841 GCACACGCGCAGTTTCCA 61.948 61.111 5.73 0.00 0.00 3.53
620 621 2.052237 CACACGCGCAGTTTCCAC 60.052 61.111 5.73 0.00 0.00 4.02
621 622 2.203015 ACACGCGCAGTTTCCACT 60.203 55.556 5.73 0.00 0.00 4.00
622 623 1.817941 ACACGCGCAGTTTCCACTT 60.818 52.632 5.73 0.00 0.00 3.16
623 624 1.369209 CACGCGCAGTTTCCACTTG 60.369 57.895 5.73 0.00 0.00 3.16
624 625 2.427410 CGCGCAGTTTCCACTTGC 60.427 61.111 8.75 0.00 0.00 4.01
625 626 2.427410 GCGCAGTTTCCACTTGCG 60.427 61.111 13.09 13.09 45.51 4.85
626 627 2.427410 CGCAGTTTCCACTTGCGC 60.427 61.111 0.00 0.00 40.85 6.09
627 628 2.721231 GCAGTTTCCACTTGCGCA 59.279 55.556 5.66 5.66 0.00 6.09
628 629 1.286880 GCAGTTTCCACTTGCGCAT 59.713 52.632 12.75 0.00 0.00 4.73
629 630 0.521291 GCAGTTTCCACTTGCGCATA 59.479 50.000 12.75 0.83 0.00 3.14
630 631 1.729149 GCAGTTTCCACTTGCGCATAC 60.729 52.381 12.75 1.16 0.00 2.39
631 632 1.535028 CAGTTTCCACTTGCGCATACA 59.465 47.619 12.75 0.00 0.00 2.29
632 633 2.162208 CAGTTTCCACTTGCGCATACAT 59.838 45.455 12.75 0.00 0.00 2.29
633 634 3.373748 CAGTTTCCACTTGCGCATACATA 59.626 43.478 12.75 0.00 0.00 2.29
634 635 3.374058 AGTTTCCACTTGCGCATACATAC 59.626 43.478 12.75 4.18 0.00 2.39
635 636 2.682155 TCCACTTGCGCATACATACA 57.318 45.000 12.75 0.00 0.00 2.29
636 637 3.192541 TCCACTTGCGCATACATACAT 57.807 42.857 12.75 0.00 0.00 2.29
637 638 4.329462 TCCACTTGCGCATACATACATA 57.671 40.909 12.75 0.00 0.00 2.29
638 639 4.055360 TCCACTTGCGCATACATACATAC 58.945 43.478 12.75 0.00 0.00 2.39
639 640 3.121025 CCACTTGCGCATACATACATACG 60.121 47.826 12.75 0.00 0.00 3.06
640 641 3.489416 CACTTGCGCATACATACATACGT 59.511 43.478 12.75 0.00 0.00 3.57
641 642 4.677832 CACTTGCGCATACATACATACGTA 59.322 41.667 12.75 0.00 0.00 3.57
642 643 4.678287 ACTTGCGCATACATACATACGTAC 59.322 41.667 12.75 0.00 0.00 3.67
643 644 4.226113 TGCGCATACATACATACGTACA 57.774 40.909 5.66 0.00 0.00 2.90
644 645 3.976306 TGCGCATACATACATACGTACAC 59.024 43.478 5.66 0.00 0.00 2.90
645 646 3.362831 GCGCATACATACATACGTACACC 59.637 47.826 0.30 0.00 0.00 4.16
646 647 4.538917 CGCATACATACATACGTACACCA 58.461 43.478 0.00 0.00 0.00 4.17
647 648 5.158494 CGCATACATACATACGTACACCAT 58.842 41.667 0.00 0.00 0.00 3.55
648 649 5.285370 CGCATACATACATACGTACACCATC 59.715 44.000 0.00 0.00 0.00 3.51
649 650 5.285370 GCATACATACATACGTACACCATCG 59.715 44.000 0.00 0.00 0.00 3.84
650 651 3.635331 ACATACATACGTACACCATCGC 58.365 45.455 0.00 0.00 0.00 4.58
651 652 2.388106 TACATACGTACACCATCGCG 57.612 50.000 0.00 0.00 0.00 5.87
652 653 0.868602 ACATACGTACACCATCGCGC 60.869 55.000 0.00 0.00 0.00 6.86
653 654 1.656263 ATACGTACACCATCGCGCG 60.656 57.895 26.76 26.76 0.00 6.86
666 667 4.873129 GCGCGCTTCCGATCCTCA 62.873 66.667 26.67 0.00 36.29 3.86
805 807 2.590575 CACCCACCCACACACGAC 60.591 66.667 0.00 0.00 0.00 4.34
832 834 1.536418 CCCACTCCACTCCACTCCA 60.536 63.158 0.00 0.00 0.00 3.86
833 835 1.127567 CCCACTCCACTCCACTCCAA 61.128 60.000 0.00 0.00 0.00 3.53
867 880 0.102120 CTAGCAAGAGAGTCCCAGCG 59.898 60.000 0.00 0.00 0.00 5.18
868 881 1.323271 TAGCAAGAGAGTCCCAGCGG 61.323 60.000 0.00 0.00 0.00 5.52
869 882 2.581354 CAAGAGAGTCCCAGCGGG 59.419 66.667 7.24 7.24 46.11 6.13
870 883 2.120718 AAGAGAGTCCCAGCGGGT 59.879 61.111 12.46 0.00 44.74 5.28
871 884 2.286523 AAGAGAGTCCCAGCGGGTG 61.287 63.158 12.46 0.00 44.74 4.61
872 885 2.680352 GAGAGTCCCAGCGGGTGA 60.680 66.667 9.09 2.17 44.74 4.02
873 886 2.997897 AGAGTCCCAGCGGGTGAC 60.998 66.667 9.09 13.85 44.74 3.67
897 910 1.194121 TGCCACTGCTGCTCTCCTAA 61.194 55.000 0.00 0.00 38.71 2.69
917 930 2.716017 GGCACTCAGGCGAGCTAGT 61.716 63.158 6.32 0.00 43.66 2.57
918 931 1.226831 GCACTCAGGCGAGCTAGTC 60.227 63.158 6.32 0.00 43.66 2.59
928 941 2.420138 GAGCTAGTCGATCTGCCCA 58.580 57.895 0.00 0.00 0.00 5.36
1044 1057 2.430921 GAGCACCACCAGTCGTCG 60.431 66.667 0.00 0.00 0.00 5.12
1045 1058 3.208884 GAGCACCACCAGTCGTCGT 62.209 63.158 0.00 0.00 0.00 4.34
1046 1059 2.733593 GCACCACCAGTCGTCGTC 60.734 66.667 0.00 0.00 0.00 4.20
1424 1450 1.660167 GAGGCCCACACGGTAATTAC 58.340 55.000 7.09 7.09 0.00 1.89
1425 1451 0.253894 AGGCCCACACGGTAATTACC 59.746 55.000 22.69 22.69 42.98 2.85
1426 1452 0.035247 GGCCCACACGGTAATTACCA 60.035 55.000 29.56 0.00 46.80 3.25
1427 1453 1.613785 GGCCCACACGGTAATTACCAA 60.614 52.381 29.56 0.00 46.80 3.67
1428 1454 2.371306 GCCCACACGGTAATTACCAAT 58.629 47.619 29.56 16.96 46.80 3.16
1429 1455 2.756207 GCCCACACGGTAATTACCAATT 59.244 45.455 29.56 13.62 46.80 2.32
1430 1456 3.946558 GCCCACACGGTAATTACCAATTA 59.053 43.478 29.56 0.00 46.80 1.40
1478 1507 0.108329 CAACCCGTAGTGGCAGTAGG 60.108 60.000 13.73 13.73 35.87 3.18
1661 1695 0.320771 TTCTCAAAGTCTGGAGCCGC 60.321 55.000 0.00 0.00 0.00 6.53
1938 1986 1.478105 GATTGGGTGGTGATTTGCCTC 59.522 52.381 0.00 0.00 0.00 4.70
1945 1993 1.908619 TGGTGATTTGCCTCTCAGCTA 59.091 47.619 9.23 0.00 39.87 3.32
1946 1994 2.093288 TGGTGATTTGCCTCTCAGCTAG 60.093 50.000 9.23 0.00 39.87 3.42
1947 1995 1.939255 GTGATTTGCCTCTCAGCTAGC 59.061 52.381 6.62 6.62 0.00 3.42
1976 2026 2.224066 CCATCATCTACCCGGTGAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
1985 2035 1.874019 CGGTGAAGACGGATCTGCG 60.874 63.158 0.00 0.00 32.21 5.18
1988 2038 0.171455 GTGAAGACGGATCTGCGAGT 59.829 55.000 0.00 0.00 32.21 4.18
2070 2120 1.806461 CTGGAGGCCATGCATGCATC 61.806 60.000 30.07 19.38 40.15 3.91
2177 2234 2.016096 GCTCCTGCTTTAGCTCTTGGG 61.016 57.143 3.10 0.00 42.66 4.12
2221 2278 3.747529 CCATTGCATCGCATGTAGATGTA 59.252 43.478 24.10 20.13 45.25 2.29
2230 2287 6.541111 TCGCATGTAGATGTAGTAGTAGTG 57.459 41.667 1.37 0.00 31.50 2.74
2253 2310 4.322123 GGTGGTCAAAGTAACTCCTCTCTC 60.322 50.000 0.00 0.00 0.00 3.20
2254 2311 4.525100 GTGGTCAAAGTAACTCCTCTCTCT 59.475 45.833 0.00 0.00 0.00 3.10
2269 2340 5.773680 TCCTCTCTCTAGTCTCTAGTCTAGC 59.226 48.000 1.60 0.00 35.00 3.42
2271 2342 6.294787 CCTCTCTCTAGTCTCTAGTCTAGCTG 60.295 50.000 0.00 0.00 35.00 4.24
2272 2343 6.134055 TCTCTCTAGTCTCTAGTCTAGCTGT 58.866 44.000 0.00 0.00 35.00 4.40
2273 2344 7.292319 TCTCTCTAGTCTCTAGTCTAGCTGTA 58.708 42.308 0.00 0.00 35.00 2.74
2357 2448 2.336945 TCTCACATGGTGATGGATGC 57.663 50.000 0.00 0.00 41.94 3.91
2371 2471 0.962356 GGATGCTGTGGTCCTTGTGG 60.962 60.000 0.00 0.00 0.00 4.17
2372 2472 0.250901 GATGCTGTGGTCCTTGTGGT 60.251 55.000 0.00 0.00 34.23 4.16
2373 2473 1.003118 GATGCTGTGGTCCTTGTGGTA 59.997 52.381 0.00 0.00 34.23 3.25
2374 2474 0.396435 TGCTGTGGTCCTTGTGGTAG 59.604 55.000 0.00 0.00 34.23 3.18
2375 2475 0.396811 GCTGTGGTCCTTGTGGTAGT 59.603 55.000 0.00 0.00 34.23 2.73
2376 2476 1.608283 GCTGTGGTCCTTGTGGTAGTC 60.608 57.143 0.00 0.00 34.23 2.59
2408 2508 1.961277 GTGCTGGTTGTGCGCTAGT 60.961 57.895 9.73 0.00 37.87 2.57
2409 2509 0.669318 GTGCTGGTTGTGCGCTAGTA 60.669 55.000 9.73 0.00 37.87 1.82
2410 2510 0.389817 TGCTGGTTGTGCGCTAGTAG 60.390 55.000 9.73 0.63 0.00 2.57
2510 2632 1.101331 CTCTTCAATGAAGCCAGGCC 58.899 55.000 17.58 0.00 39.29 5.19
2540 2662 2.867333 TTCGATCGACACTCTGCCGC 62.867 60.000 19.26 0.00 0.00 6.53
2605 2730 1.726533 TTTTTGAACGGGGCGGTGAC 61.727 55.000 0.00 0.00 0.00 3.67
2606 2731 4.629523 TTGAACGGGGCGGTGACC 62.630 66.667 0.00 0.00 0.00 4.02
2654 2779 2.509336 CTGAGCTGGCCCGTTACG 60.509 66.667 0.00 0.00 0.00 3.18
2682 2820 7.787725 GGAGATTCAAAATACTCCAACGTAT 57.212 36.000 0.00 0.00 45.53 3.06
2683 2821 8.882415 GGAGATTCAAAATACTCCAACGTATA 57.118 34.615 0.00 0.00 45.53 1.47
2686 2824 9.886132 AGATTCAAAATACTCCAACGTATAAGT 57.114 29.630 0.00 0.00 30.27 2.24
2696 2834 8.572855 ACTCCAACGTATAAGTAAAGTAGAGT 57.427 34.615 0.00 0.00 0.00 3.24
2697 2835 8.457261 ACTCCAACGTATAAGTAAAGTAGAGTG 58.543 37.037 0.00 0.00 31.63 3.51
2701 2840 8.457261 CAACGTATAAGTAAAGTAGAGTGGAGT 58.543 37.037 0.00 0.00 0.00 3.85
2712 2851 0.759346 GAGTGGAGTGTGGAGTGGTT 59.241 55.000 0.00 0.00 0.00 3.67
2720 2859 1.412710 GTGTGGAGTGGTTCTGAGACA 59.587 52.381 0.00 0.00 0.00 3.41
2757 2896 3.819188 CTCCAAAGCTGGCGGATC 58.181 61.111 0.00 0.00 43.17 3.36
2778 2917 3.006110 TCTGTTAACAACCCGTCCACTAG 59.994 47.826 10.03 0.00 0.00 2.57
2779 2918 2.071540 GTTAACAACCCGTCCACTAGC 58.928 52.381 0.00 0.00 0.00 3.42
2780 2919 0.244450 TAACAACCCGTCCACTAGCG 59.756 55.000 0.00 0.00 0.00 4.26
2781 2920 2.813908 CAACCCGTCCACTAGCGC 60.814 66.667 0.00 0.00 0.00 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.353777 AGATCTAAGCAACCTCCACACTA 58.646 43.478 0.00 0.00 0.00 2.74
1 2 3.177228 AGATCTAAGCAACCTCCACACT 58.823 45.455 0.00 0.00 0.00 3.55
2 3 3.618690 AGATCTAAGCAACCTCCACAC 57.381 47.619 0.00 0.00 0.00 3.82
3 4 4.640771 AAAGATCTAAGCAACCTCCACA 57.359 40.909 0.00 0.00 0.00 4.17
4 5 5.241728 ACAAAAAGATCTAAGCAACCTCCAC 59.758 40.000 0.00 0.00 0.00 4.02
5 6 5.385198 ACAAAAAGATCTAAGCAACCTCCA 58.615 37.500 0.00 0.00 0.00 3.86
6 7 5.966742 ACAAAAAGATCTAAGCAACCTCC 57.033 39.130 0.00 0.00 0.00 4.30
7 8 8.951243 AGAATACAAAAAGATCTAAGCAACCTC 58.049 33.333 0.00 0.00 0.00 3.85
8 9 8.870075 AGAATACAAAAAGATCTAAGCAACCT 57.130 30.769 0.00 0.00 0.00 3.50
9 10 9.914131 AAAGAATACAAAAAGATCTAAGCAACC 57.086 29.630 0.00 0.00 0.00 3.77
13 14 9.267096 CGACAAAGAATACAAAAAGATCTAAGC 57.733 33.333 0.00 0.00 0.00 3.09
14 15 9.760660 CCGACAAAGAATACAAAAAGATCTAAG 57.239 33.333 0.00 0.00 0.00 2.18
15 16 9.280174 ACCGACAAAGAATACAAAAAGATCTAA 57.720 29.630 0.00 0.00 0.00 2.10
16 17 8.842358 ACCGACAAAGAATACAAAAAGATCTA 57.158 30.769 0.00 0.00 0.00 1.98
17 18 7.745620 ACCGACAAAGAATACAAAAAGATCT 57.254 32.000 0.00 0.00 0.00 2.75
18 19 7.692705 GCTACCGACAAAGAATACAAAAAGATC 59.307 37.037 0.00 0.00 0.00 2.75
19 20 7.174253 TGCTACCGACAAAGAATACAAAAAGAT 59.826 33.333 0.00 0.00 0.00 2.40
20 21 6.483974 TGCTACCGACAAAGAATACAAAAAGA 59.516 34.615 0.00 0.00 0.00 2.52
21 22 6.664515 TGCTACCGACAAAGAATACAAAAAG 58.335 36.000 0.00 0.00 0.00 2.27
22 23 6.621316 TGCTACCGACAAAGAATACAAAAA 57.379 33.333 0.00 0.00 0.00 1.94
23 24 6.811253 ATGCTACCGACAAAGAATACAAAA 57.189 33.333 0.00 0.00 0.00 2.44
24 25 7.101054 ACTATGCTACCGACAAAGAATACAAA 58.899 34.615 0.00 0.00 0.00 2.83
25 26 6.636705 ACTATGCTACCGACAAAGAATACAA 58.363 36.000 0.00 0.00 0.00 2.41
26 27 6.216801 ACTATGCTACCGACAAAGAATACA 57.783 37.500 0.00 0.00 0.00 2.29
27 28 5.398711 CGACTATGCTACCGACAAAGAATAC 59.601 44.000 0.00 0.00 0.00 1.89
28 29 5.066893 ACGACTATGCTACCGACAAAGAATA 59.933 40.000 0.00 0.00 0.00 1.75
29 30 4.142227 ACGACTATGCTACCGACAAAGAAT 60.142 41.667 0.00 0.00 0.00 2.40
30 31 3.192001 ACGACTATGCTACCGACAAAGAA 59.808 43.478 0.00 0.00 0.00 2.52
31 32 2.751259 ACGACTATGCTACCGACAAAGA 59.249 45.455 0.00 0.00 0.00 2.52
32 33 2.852413 CACGACTATGCTACCGACAAAG 59.148 50.000 0.00 0.00 0.00 2.77
33 34 2.229543 ACACGACTATGCTACCGACAAA 59.770 45.455 0.00 0.00 0.00 2.83
34 35 1.814394 ACACGACTATGCTACCGACAA 59.186 47.619 0.00 0.00 0.00 3.18
35 36 1.131693 CACACGACTATGCTACCGACA 59.868 52.381 0.00 0.00 0.00 4.35
36 37 1.823828 CACACGACTATGCTACCGAC 58.176 55.000 0.00 0.00 0.00 4.79
37 38 0.099968 GCACACGACTATGCTACCGA 59.900 55.000 0.00 0.00 38.84 4.69
38 39 1.200474 CGCACACGACTATGCTACCG 61.200 60.000 0.00 0.00 43.93 4.02
39 40 0.179145 ACGCACACGACTATGCTACC 60.179 55.000 0.00 0.00 43.93 3.18
40 41 1.582502 GAACGCACACGACTATGCTAC 59.417 52.381 0.00 0.00 43.93 3.58
41 42 1.471287 AGAACGCACACGACTATGCTA 59.529 47.619 0.00 0.00 43.93 3.49
42 43 0.243907 AGAACGCACACGACTATGCT 59.756 50.000 0.00 0.00 43.93 3.79
43 44 1.582502 GTAGAACGCACACGACTATGC 59.417 52.381 0.00 0.00 43.93 3.14
44 45 1.838345 CGTAGAACGCACACGACTATG 59.162 52.381 0.00 0.00 43.93 2.23
45 46 2.169663 CGTAGAACGCACACGACTAT 57.830 50.000 0.00 0.00 43.93 2.12
46 47 3.663078 CGTAGAACGCACACGACTA 57.337 52.632 0.00 0.00 43.93 2.59
47 48 4.528002 CGTAGAACGCACACGACT 57.472 55.556 0.00 0.00 43.93 4.18
71 72 4.551388 ACAAAGCCGATCTCGAGATAATC 58.449 43.478 27.36 15.47 43.02 1.75
72 73 4.592485 ACAAAGCCGATCTCGAGATAAT 57.408 40.909 27.36 7.39 43.02 1.28
73 74 5.298527 TCTTACAAAGCCGATCTCGAGATAA 59.701 40.000 27.36 13.51 43.02 1.75
74 75 4.820173 TCTTACAAAGCCGATCTCGAGATA 59.180 41.667 27.36 6.28 43.02 1.98
75 76 3.632604 TCTTACAAAGCCGATCTCGAGAT 59.367 43.478 27.63 27.63 43.02 2.75
76 77 3.014623 TCTTACAAAGCCGATCTCGAGA 58.985 45.455 19.19 19.19 43.02 4.04
77 78 3.367607 CTCTTACAAAGCCGATCTCGAG 58.632 50.000 5.93 5.93 43.02 4.04
78 79 2.479730 GCTCTTACAAAGCCGATCTCGA 60.480 50.000 0.22 0.00 43.02 4.04
79 80 1.855360 GCTCTTACAAAGCCGATCTCG 59.145 52.381 0.00 0.00 39.44 4.04
80 81 1.855360 CGCTCTTACAAAGCCGATCTC 59.145 52.381 0.00 0.00 36.36 2.75
81 82 1.927895 CGCTCTTACAAAGCCGATCT 58.072 50.000 0.00 0.00 36.36 2.75
82 83 0.301987 GCGCTCTTACAAAGCCGATC 59.698 55.000 0.00 0.00 36.36 3.69
83 84 1.090052 GGCGCTCTTACAAAGCCGAT 61.090 55.000 7.64 0.00 38.28 4.18
84 85 1.740296 GGCGCTCTTACAAAGCCGA 60.740 57.895 7.64 0.00 38.28 5.54
85 86 2.785258 GGCGCTCTTACAAAGCCG 59.215 61.111 7.64 0.00 38.28 5.52
87 88 0.955919 AGGTGGCGCTCTTACAAAGC 60.956 55.000 7.64 0.00 36.38 3.51
88 89 1.079503 GAGGTGGCGCTCTTACAAAG 58.920 55.000 7.64 0.00 0.00 2.77
89 90 0.394938 TGAGGTGGCGCTCTTACAAA 59.605 50.000 7.64 0.00 0.00 2.83
90 91 0.613260 ATGAGGTGGCGCTCTTACAA 59.387 50.000 7.64 0.00 0.00 2.41
91 92 0.175760 GATGAGGTGGCGCTCTTACA 59.824 55.000 7.64 3.36 0.00 2.41
92 93 0.175760 TGATGAGGTGGCGCTCTTAC 59.824 55.000 7.64 1.49 0.00 2.34
93 94 1.069204 GATGATGAGGTGGCGCTCTTA 59.931 52.381 7.64 0.00 0.00 2.10
94 95 0.179062 GATGATGAGGTGGCGCTCTT 60.179 55.000 7.64 0.00 0.00 2.85
95 96 1.047596 AGATGATGAGGTGGCGCTCT 61.048 55.000 7.64 2.30 0.00 4.09
96 97 0.179062 AAGATGATGAGGTGGCGCTC 60.179 55.000 7.64 0.00 0.00 5.03
97 98 1.123077 TAAGATGATGAGGTGGCGCT 58.877 50.000 7.64 0.00 0.00 5.92
98 99 2.175878 ATAAGATGATGAGGTGGCGC 57.824 50.000 0.00 0.00 0.00 6.53
99 100 4.108336 CGATATAAGATGATGAGGTGGCG 58.892 47.826 0.00 0.00 0.00 5.69
100 101 5.078411 ACGATATAAGATGATGAGGTGGC 57.922 43.478 0.00 0.00 0.00 5.01
101 102 5.802451 CGAACGATATAAGATGATGAGGTGG 59.198 44.000 0.00 0.00 0.00 4.61
102 103 5.802451 CCGAACGATATAAGATGATGAGGTG 59.198 44.000 0.00 0.00 0.00 4.00
103 104 5.622460 GCCGAACGATATAAGATGATGAGGT 60.622 44.000 0.00 0.00 0.00 3.85
104 105 4.800993 GCCGAACGATATAAGATGATGAGG 59.199 45.833 0.00 0.00 0.00 3.86
105 106 4.800993 GGCCGAACGATATAAGATGATGAG 59.199 45.833 0.00 0.00 0.00 2.90
106 107 4.219725 TGGCCGAACGATATAAGATGATGA 59.780 41.667 0.00 0.00 0.00 2.92
107 108 4.494484 TGGCCGAACGATATAAGATGATG 58.506 43.478 0.00 0.00 0.00 3.07
108 109 4.801330 TGGCCGAACGATATAAGATGAT 57.199 40.909 0.00 0.00 0.00 2.45
109 110 4.021456 ACATGGCCGAACGATATAAGATGA 60.021 41.667 0.00 0.00 0.00 2.92
110 111 4.245660 ACATGGCCGAACGATATAAGATG 58.754 43.478 0.00 0.00 0.00 2.90
111 112 4.537135 ACATGGCCGAACGATATAAGAT 57.463 40.909 0.00 0.00 0.00 2.40
112 113 4.521639 AGTACATGGCCGAACGATATAAGA 59.478 41.667 0.00 0.00 0.00 2.10
113 114 4.806330 AGTACATGGCCGAACGATATAAG 58.194 43.478 0.00 0.00 0.00 1.73
114 115 4.859304 AGTACATGGCCGAACGATATAA 57.141 40.909 0.00 0.00 0.00 0.98
115 116 4.859304 AAGTACATGGCCGAACGATATA 57.141 40.909 0.00 0.00 0.00 0.86
116 117 3.746045 AAGTACATGGCCGAACGATAT 57.254 42.857 0.00 0.00 0.00 1.63
117 118 3.131577 AGAAAGTACATGGCCGAACGATA 59.868 43.478 0.00 0.00 0.00 2.92
118 119 2.093658 AGAAAGTACATGGCCGAACGAT 60.094 45.455 0.00 0.00 0.00 3.73
119 120 1.274167 AGAAAGTACATGGCCGAACGA 59.726 47.619 0.00 0.00 0.00 3.85
120 121 1.722011 AGAAAGTACATGGCCGAACG 58.278 50.000 0.00 0.00 0.00 3.95
121 122 3.560068 CCATAGAAAGTACATGGCCGAAC 59.440 47.826 0.00 0.00 33.29 3.95
122 123 3.199071 ACCATAGAAAGTACATGGCCGAA 59.801 43.478 8.67 0.00 42.54 4.30
123 124 2.769663 ACCATAGAAAGTACATGGCCGA 59.230 45.455 8.67 0.00 42.54 5.54
124 125 2.872245 CACCATAGAAAGTACATGGCCG 59.128 50.000 8.67 0.00 42.54 6.13
125 126 3.214328 CCACCATAGAAAGTACATGGCC 58.786 50.000 8.67 0.00 42.54 5.36
126 127 3.886123 ACCACCATAGAAAGTACATGGC 58.114 45.455 8.67 0.00 42.54 4.40
127 128 4.881850 GGAACCACCATAGAAAGTACATGG 59.118 45.833 7.45 7.45 44.04 3.66
128 129 5.745227 AGGAACCACCATAGAAAGTACATG 58.255 41.667 0.00 0.00 42.04 3.21
129 130 6.388619 AAGGAACCACCATAGAAAGTACAT 57.611 37.500 0.00 0.00 42.04 2.29
130 131 5.836024 AAGGAACCACCATAGAAAGTACA 57.164 39.130 0.00 0.00 42.04 2.90
139 140 9.661563 CGCTTTATATATAAAGGAACCACCATA 57.338 33.333 32.05 6.10 45.78 2.74
140 141 7.610305 CCGCTTTATATATAAAGGAACCACCAT 59.390 37.037 32.05 0.00 45.78 3.55
141 142 6.938030 CCGCTTTATATATAAAGGAACCACCA 59.062 38.462 32.05 6.66 45.78 4.17
142 143 6.373495 CCCGCTTTATATATAAAGGAACCACC 59.627 42.308 32.05 19.38 45.78 4.61
143 144 6.373495 CCCCGCTTTATATATAAAGGAACCAC 59.627 42.308 32.05 19.87 45.78 4.16
144 145 6.478129 CCCCGCTTTATATATAAAGGAACCA 58.522 40.000 32.05 8.40 45.78 3.67
145 146 5.356190 GCCCCGCTTTATATATAAAGGAACC 59.644 44.000 32.05 20.63 45.78 3.62
146 147 5.064325 CGCCCCGCTTTATATATAAAGGAAC 59.936 44.000 32.05 20.88 45.78 3.62
147 148 5.046448 TCGCCCCGCTTTATATATAAAGGAA 60.046 40.000 32.05 14.95 45.78 3.36
148 149 4.467082 TCGCCCCGCTTTATATATAAAGGA 59.533 41.667 32.05 22.00 45.78 3.36
149 150 4.761975 TCGCCCCGCTTTATATATAAAGG 58.238 43.478 32.05 24.62 45.78 3.11
150 151 8.956100 TGCTTTCGCCCCGCTTTATATATAAAG 61.956 40.741 29.34 29.34 42.37 1.85
151 152 5.122711 GCTTTCGCCCCGCTTTATATATAAA 59.877 40.000 15.47 15.47 0.00 1.40
152 153 4.632688 GCTTTCGCCCCGCTTTATATATAA 59.367 41.667 0.81 0.81 0.00 0.98
153 154 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
154 155 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
155 156 2.224329 TGCTTTCGCCCCGCTTTATATA 60.224 45.455 0.00 0.00 34.43 0.86
156 157 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
157 158 0.107606 TGCTTTCGCCCCGCTTTATA 60.108 50.000 0.00 0.00 34.43 0.98
158 159 0.751643 ATGCTTTCGCCCCGCTTTAT 60.752 50.000 0.00 0.00 34.43 1.40
159 160 1.377987 ATGCTTTCGCCCCGCTTTA 60.378 52.632 0.00 0.00 34.43 1.85
160 161 2.676471 ATGCTTTCGCCCCGCTTT 60.676 55.556 0.00 0.00 34.43 3.51
161 162 3.443045 CATGCTTTCGCCCCGCTT 61.443 61.111 0.00 0.00 34.43 4.68
162 163 4.722700 ACATGCTTTCGCCCCGCT 62.723 61.111 0.00 0.00 34.43 5.52
163 164 2.763627 AAAACATGCTTTCGCCCCGC 62.764 55.000 0.00 0.00 34.43 6.13
164 165 1.008361 CAAAACATGCTTTCGCCCCG 61.008 55.000 0.00 0.00 34.43 5.73
165 166 0.316841 TCAAAACATGCTTTCGCCCC 59.683 50.000 0.00 0.00 34.43 5.80
166 167 1.269448 TCTCAAAACATGCTTTCGCCC 59.731 47.619 0.00 0.00 34.43 6.13
167 168 2.704725 TCTCAAAACATGCTTTCGCC 57.295 45.000 0.00 0.00 34.43 5.54
168 169 2.401720 CGTTCTCAAAACATGCTTTCGC 59.598 45.455 0.00 0.00 0.00 4.70
169 170 3.659444 GTCGTTCTCAAAACATGCTTTCG 59.341 43.478 0.00 0.00 0.00 3.46
170 171 3.975035 GGTCGTTCTCAAAACATGCTTTC 59.025 43.478 0.00 0.00 0.00 2.62
171 172 3.632145 AGGTCGTTCTCAAAACATGCTTT 59.368 39.130 0.00 0.00 0.00 3.51
172 173 3.214328 AGGTCGTTCTCAAAACATGCTT 58.786 40.909 0.00 0.00 0.00 3.91
173 174 2.851195 AGGTCGTTCTCAAAACATGCT 58.149 42.857 0.00 0.00 0.00 3.79
174 175 3.555518 GAAGGTCGTTCTCAAAACATGC 58.444 45.455 0.00 0.00 31.73 4.06
175 176 3.363970 CGGAAGGTCGTTCTCAAAACATG 60.364 47.826 5.33 0.00 35.25 3.21
176 177 2.806244 CGGAAGGTCGTTCTCAAAACAT 59.194 45.455 5.33 0.00 35.25 2.71
177 178 2.159071 TCGGAAGGTCGTTCTCAAAACA 60.159 45.455 5.33 0.00 35.25 2.83
178 179 2.476821 TCGGAAGGTCGTTCTCAAAAC 58.523 47.619 5.33 0.00 35.25 2.43
179 180 2.894763 TCGGAAGGTCGTTCTCAAAA 57.105 45.000 5.33 0.00 35.25 2.44
180 181 2.683968 CATCGGAAGGTCGTTCTCAAA 58.316 47.619 5.33 0.00 35.25 2.69
181 182 1.671850 GCATCGGAAGGTCGTTCTCAA 60.672 52.381 5.33 0.00 35.25 3.02
182 183 0.108804 GCATCGGAAGGTCGTTCTCA 60.109 55.000 5.33 0.00 35.25 3.27
183 184 0.108804 TGCATCGGAAGGTCGTTCTC 60.109 55.000 5.33 0.00 35.25 2.87
184 185 0.537188 ATGCATCGGAAGGTCGTTCT 59.463 50.000 0.00 0.00 35.25 3.01
185 186 0.652592 CATGCATCGGAAGGTCGTTC 59.347 55.000 0.00 0.00 0.00 3.95
186 187 0.036388 ACATGCATCGGAAGGTCGTT 60.036 50.000 0.00 0.00 0.00 3.85
187 188 0.740868 CACATGCATCGGAAGGTCGT 60.741 55.000 0.00 0.00 0.00 4.34
188 189 2.009108 CACATGCATCGGAAGGTCG 58.991 57.895 0.00 0.00 0.00 4.79
189 190 1.723870 GCACATGCATCGGAAGGTC 59.276 57.895 0.00 0.00 41.59 3.85
190 191 3.909662 GCACATGCATCGGAAGGT 58.090 55.556 0.00 0.00 41.59 3.50
200 201 1.652124 CGCTGAAAGAAATGCACATGC 59.348 47.619 0.00 0.00 37.69 4.06
201 202 2.256174 CCGCTGAAAGAAATGCACATG 58.744 47.619 0.00 0.00 34.07 3.21
202 203 1.203052 CCCGCTGAAAGAAATGCACAT 59.797 47.619 0.00 0.00 34.07 3.21
203 204 0.597568 CCCGCTGAAAGAAATGCACA 59.402 50.000 0.00 0.00 34.07 4.57
204 205 0.109132 CCCCGCTGAAAGAAATGCAC 60.109 55.000 0.00 0.00 34.07 4.57
205 206 0.539438 ACCCCGCTGAAAGAAATGCA 60.539 50.000 0.00 0.00 34.07 3.96
206 207 0.603065 AACCCCGCTGAAAGAAATGC 59.397 50.000 0.00 0.00 34.07 3.56
207 208 2.676076 CAAACCCCGCTGAAAGAAATG 58.324 47.619 0.00 0.00 34.07 2.32
208 209 1.000843 GCAAACCCCGCTGAAAGAAAT 59.999 47.619 0.00 0.00 34.07 2.17
209 210 0.387565 GCAAACCCCGCTGAAAGAAA 59.612 50.000 0.00 0.00 34.07 2.52
210 211 1.460273 GGCAAACCCCGCTGAAAGAA 61.460 55.000 0.00 0.00 34.07 2.52
211 212 1.901464 GGCAAACCCCGCTGAAAGA 60.901 57.895 0.00 0.00 34.07 2.52
212 213 2.650778 GGCAAACCCCGCTGAAAG 59.349 61.111 0.00 0.00 0.00 2.62
213 214 3.291383 CGGCAAACCCCGCTGAAA 61.291 61.111 0.00 0.00 42.03 2.69
220 221 2.082629 CTTGTTCCACGGCAAACCCC 62.083 60.000 0.00 0.00 0.00 4.95
221 222 1.362355 CTTGTTCCACGGCAAACCC 59.638 57.895 0.00 0.00 0.00 4.11
222 223 1.362355 CCTTGTTCCACGGCAAACC 59.638 57.895 0.00 0.00 0.00 3.27
223 224 1.265905 CTACCTTGTTCCACGGCAAAC 59.734 52.381 0.00 0.00 0.00 2.93
224 225 1.134037 ACTACCTTGTTCCACGGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
225 226 0.470766 ACTACCTTGTTCCACGGCAA 59.529 50.000 0.00 0.00 0.00 4.52
226 227 0.250124 CACTACCTTGTTCCACGGCA 60.250 55.000 0.00 0.00 0.00 5.69
227 228 0.034337 TCACTACCTTGTTCCACGGC 59.966 55.000 0.00 0.00 0.00 5.68
228 229 2.224209 ACTTCACTACCTTGTTCCACGG 60.224 50.000 0.00 0.00 0.00 4.94
229 230 3.057734 GACTTCACTACCTTGTTCCACG 58.942 50.000 0.00 0.00 0.00 4.94
230 231 4.067972 TGACTTCACTACCTTGTTCCAC 57.932 45.455 0.00 0.00 0.00 4.02
231 232 4.974645 ATGACTTCACTACCTTGTTCCA 57.025 40.909 0.00 0.00 0.00 3.53
232 233 5.176592 GGTATGACTTCACTACCTTGTTCC 58.823 45.833 9.10 0.00 33.57 3.62
233 234 4.863131 CGGTATGACTTCACTACCTTGTTC 59.137 45.833 12.28 0.00 34.08 3.18
234 235 4.817517 CGGTATGACTTCACTACCTTGTT 58.182 43.478 12.28 0.00 34.08 2.83
235 236 3.368116 GCGGTATGACTTCACTACCTTGT 60.368 47.826 12.28 0.00 34.08 3.16
236 237 3.187700 GCGGTATGACTTCACTACCTTG 58.812 50.000 12.28 4.09 34.08 3.61
237 238 2.829720 TGCGGTATGACTTCACTACCTT 59.170 45.455 12.28 0.00 34.08 3.50
238 239 2.427453 CTGCGGTATGACTTCACTACCT 59.573 50.000 12.28 0.00 34.08 3.08
239 240 2.426024 TCTGCGGTATGACTTCACTACC 59.574 50.000 0.00 7.36 33.10 3.18
240 241 3.777465 TCTGCGGTATGACTTCACTAC 57.223 47.619 0.00 0.00 0.00 2.73
241 242 4.794278 TTTCTGCGGTATGACTTCACTA 57.206 40.909 0.00 0.00 0.00 2.74
245 246 5.297547 TGGATATTTCTGCGGTATGACTTC 58.702 41.667 0.00 0.00 0.00 3.01
255 256 5.408299 TGTCGGATAAATGGATATTTCTGCG 59.592 40.000 0.00 0.00 41.86 5.18
293 294 0.802994 TCGTCACACGTTTGTCGCTT 60.803 50.000 14.93 0.00 43.14 4.68
306 307 1.808343 GGGTGTTTTATGGGTCGTCAC 59.192 52.381 0.00 0.00 0.00 3.67
308 309 1.456296 GGGGTGTTTTATGGGTCGTC 58.544 55.000 0.00 0.00 0.00 4.20
314 315 2.418060 GCGAAATGGGGGTGTTTTATGG 60.418 50.000 0.00 0.00 0.00 2.74
356 357 1.095807 GTACGCTTCATTGGAGGGGC 61.096 60.000 13.15 2.70 36.66 5.80
419 420 1.227031 CGCGTATGTTTCCGGCCTA 60.227 57.895 0.00 0.00 0.00 3.93
437 438 2.158696 AGAGGCTCCTCATAAATGTGGC 60.159 50.000 17.40 1.47 44.99 5.01
438 439 3.390639 AGAGAGGCTCCTCATAAATGTGG 59.609 47.826 17.40 4.95 44.99 4.17
439 440 4.100653 TGAGAGAGGCTCCTCATAAATGTG 59.899 45.833 23.36 0.00 44.99 3.21
440 441 4.100808 GTGAGAGAGGCTCCTCATAAATGT 59.899 45.833 27.20 2.84 44.99 2.71
441 442 4.630111 GTGAGAGAGGCTCCTCATAAATG 58.370 47.826 27.20 0.00 44.99 2.32
442 443 3.320541 CGTGAGAGAGGCTCCTCATAAAT 59.679 47.826 27.20 4.01 44.99 1.40
445 446 1.213182 ACGTGAGAGAGGCTCCTCATA 59.787 52.381 27.20 11.69 44.99 2.15
446 447 0.033601 ACGTGAGAGAGGCTCCTCAT 60.034 55.000 27.20 16.19 44.99 2.90
447 448 0.618981 TACGTGAGAGAGGCTCCTCA 59.381 55.000 23.36 23.36 44.99 3.86
448 449 1.305201 CTACGTGAGAGAGGCTCCTC 58.695 60.000 19.84 19.84 43.26 3.71
450 451 1.730451 GGCTACGTGAGAGAGGCTCC 61.730 65.000 11.71 2.69 43.26 4.70
451 452 1.032657 TGGCTACGTGAGAGAGGCTC 61.033 60.000 6.34 6.34 44.21 4.70
452 453 0.396417 ATGGCTACGTGAGAGAGGCT 60.396 55.000 9.84 0.00 41.28 4.58
453 454 0.031449 GATGGCTACGTGAGAGAGGC 59.969 60.000 0.00 0.00 41.16 4.70
454 455 0.671251 GGATGGCTACGTGAGAGAGG 59.329 60.000 0.00 0.00 0.00 3.69
455 456 1.066303 GTGGATGGCTACGTGAGAGAG 59.934 57.143 0.00 0.00 0.00 3.20
456 457 1.103803 GTGGATGGCTACGTGAGAGA 58.896 55.000 0.00 0.00 0.00 3.10
457 458 0.248661 CGTGGATGGCTACGTGAGAG 60.249 60.000 0.00 0.00 43.04 3.20
458 459 1.663379 CCGTGGATGGCTACGTGAGA 61.663 60.000 0.00 0.00 46.06 3.27
459 460 1.226974 CCGTGGATGGCTACGTGAG 60.227 63.158 0.00 0.00 46.06 3.51
460 461 1.040893 ATCCGTGGATGGCTACGTGA 61.041 55.000 0.00 0.00 46.06 4.35
461 462 0.597637 GATCCGTGGATGGCTACGTG 60.598 60.000 6.03 0.00 46.06 4.49
462 463 1.040893 TGATCCGTGGATGGCTACGT 61.041 55.000 6.03 0.00 46.06 3.57
463 464 0.318441 ATGATCCGTGGATGGCTACG 59.682 55.000 6.03 0.00 46.90 3.51
464 465 1.609061 CCATGATCCGTGGATGGCTAC 60.609 57.143 6.03 0.00 42.73 3.58
465 466 0.686789 CCATGATCCGTGGATGGCTA 59.313 55.000 6.03 0.00 42.73 3.93
466 467 1.056125 TCCATGATCCGTGGATGGCT 61.056 55.000 6.03 0.00 43.70 4.75
467 468 1.451504 TCCATGATCCGTGGATGGC 59.548 57.895 6.03 0.00 43.70 4.40
471 472 0.758734 GATGGTCCATGATCCGTGGA 59.241 55.000 9.76 11.73 46.01 4.02
472 473 0.250467 GGATGGTCCATGATCCGTGG 60.250 60.000 9.76 7.71 41.56 4.94
473 474 0.761187 AGGATGGTCCATGATCCGTG 59.239 55.000 9.76 0.00 42.73 4.94
474 475 1.051812 GAGGATGGTCCATGATCCGT 58.948 55.000 9.76 0.00 42.73 4.69
475 476 0.322975 GGAGGATGGTCCATGATCCG 59.677 60.000 9.76 0.00 42.73 4.18
476 477 1.627834 GAGGAGGATGGTCCATGATCC 59.372 57.143 18.64 18.64 39.61 3.36
477 478 1.627834 GGAGGAGGATGGTCCATGATC 59.372 57.143 9.76 6.72 39.61 2.92
478 479 1.061111 TGGAGGAGGATGGTCCATGAT 60.061 52.381 9.76 0.00 39.61 2.45
479 480 0.343018 TGGAGGAGGATGGTCCATGA 59.657 55.000 9.76 0.00 39.61 3.07
480 481 0.763652 CTGGAGGAGGATGGTCCATG 59.236 60.000 9.76 0.00 39.66 3.66
481 482 1.059006 GCTGGAGGAGGATGGTCCAT 61.059 60.000 3.26 3.26 39.66 3.41
482 483 1.690633 GCTGGAGGAGGATGGTCCA 60.691 63.158 0.00 0.00 39.61 4.02
483 484 2.801631 CGCTGGAGGAGGATGGTCC 61.802 68.421 0.00 0.00 36.58 4.46
484 485 2.818132 CGCTGGAGGAGGATGGTC 59.182 66.667 0.00 0.00 0.00 4.02
485 486 3.474570 GCGCTGGAGGAGGATGGT 61.475 66.667 0.00 0.00 0.00 3.55
486 487 4.247380 GGCGCTGGAGGAGGATGG 62.247 72.222 7.64 0.00 0.00 3.51
487 488 4.247380 GGGCGCTGGAGGAGGATG 62.247 72.222 7.64 0.00 0.00 3.51
494 495 3.801997 ATTGGAGGGGCGCTGGAG 61.802 66.667 9.52 0.00 0.00 3.86
495 496 4.113815 CATTGGAGGGGCGCTGGA 62.114 66.667 9.52 0.00 0.00 3.86
497 498 4.113815 TCCATTGGAGGGGCGCTG 62.114 66.667 9.52 0.00 0.00 5.18
498 499 3.801997 CTCCATTGGAGGGGCGCT 61.802 66.667 22.92 2.69 45.43 5.92
506 507 1.153369 GCGTGCTAGCTCCATTGGA 60.153 57.895 17.23 5.05 0.00 3.53
507 508 1.153289 AGCGTGCTAGCTCCATTGG 60.153 57.895 17.23 0.00 45.67 3.16
508 509 4.528674 AGCGTGCTAGCTCCATTG 57.471 55.556 17.23 0.66 45.67 2.82
523 524 1.589196 GATCTGCCGTACGTGGAGC 60.589 63.158 15.21 10.81 0.00 4.70
524 525 1.264557 CTAGATCTGCCGTACGTGGAG 59.735 57.143 15.21 15.44 0.00 3.86
525 526 1.134310 TCTAGATCTGCCGTACGTGGA 60.134 52.381 15.21 9.30 0.00 4.02
526 527 1.306148 TCTAGATCTGCCGTACGTGG 58.694 55.000 15.21 0.29 0.00 4.94
527 528 2.918549 GCATCTAGATCTGCCGTACGTG 60.919 54.545 15.21 6.95 32.15 4.49
528 529 1.267261 GCATCTAGATCTGCCGTACGT 59.733 52.381 15.21 0.00 32.15 3.57
529 530 1.537638 AGCATCTAGATCTGCCGTACG 59.462 52.381 13.51 8.69 39.22 3.67
530 531 3.425094 CGTAGCATCTAGATCTGCCGTAC 60.425 52.174 13.51 9.99 39.22 3.67
531 532 2.742589 CGTAGCATCTAGATCTGCCGTA 59.257 50.000 13.51 0.10 39.22 4.02
532 533 1.537638 CGTAGCATCTAGATCTGCCGT 59.462 52.381 13.51 0.96 39.22 5.68
533 534 2.254918 CGTAGCATCTAGATCTGCCG 57.745 55.000 13.51 8.23 39.22 5.69
553 554 3.039202 GAATGTGCGTCAAGGCCGG 62.039 63.158 0.00 0.00 0.00 6.13
554 555 2.480555 GAATGTGCGTCAAGGCCG 59.519 61.111 0.00 0.00 0.00 6.13
555 556 2.877691 GGAATGTGCGTCAAGGCC 59.122 61.111 0.00 0.00 0.00 5.19
556 557 2.480555 CGGAATGTGCGTCAAGGC 59.519 61.111 0.00 0.00 0.00 4.35
557 558 2.480555 GCGGAATGTGCGTCAAGG 59.519 61.111 0.00 0.00 32.35 3.61
564 565 2.709475 GATGGACGCGGAATGTGC 59.291 61.111 12.47 0.00 0.00 4.57
565 566 2.525248 CGGATGGACGCGGAATGTG 61.525 63.158 12.47 0.00 0.00 3.21
566 567 2.202878 CGGATGGACGCGGAATGT 60.203 61.111 12.47 0.00 0.00 2.71
567 568 2.202878 ACGGATGGACGCGGAATG 60.203 61.111 12.47 0.00 37.37 2.67
568 569 2.106332 GACGGATGGACGCGGAAT 59.894 61.111 12.47 0.00 37.37 3.01
569 570 4.137872 GGACGGATGGACGCGGAA 62.138 66.667 12.47 0.00 37.37 4.30
573 574 4.867599 GGACGGACGGATGGACGC 62.868 72.222 0.00 0.00 37.37 5.19
574 575 4.547905 CGGACGGACGGATGGACG 62.548 72.222 0.00 0.00 40.31 4.79
575 576 3.407046 GACGGACGGACGGATGGAC 62.407 68.421 6.00 0.00 38.39 4.02
576 577 3.136123 GACGGACGGACGGATGGA 61.136 66.667 6.00 0.00 38.39 3.41
577 578 4.203076 GGACGGACGGACGGATGG 62.203 72.222 6.00 0.00 38.39 3.51
578 579 4.547905 CGGACGGACGGACGGATG 62.548 72.222 6.00 0.00 38.39 3.51
584 585 4.746309 ATGGGACGGACGGACGGA 62.746 66.667 6.00 0.00 38.39 4.69
585 586 4.508128 CATGGGACGGACGGACGG 62.508 72.222 6.00 0.00 38.39 4.79
587 588 4.077184 TGCATGGGACGGACGGAC 62.077 66.667 0.00 0.00 0.00 4.79
588 589 4.077184 GTGCATGGGACGGACGGA 62.077 66.667 0.00 0.00 0.00 4.69
589 590 4.386951 TGTGCATGGGACGGACGG 62.387 66.667 0.00 0.00 0.00 4.79
590 591 3.118454 GTGTGCATGGGACGGACG 61.118 66.667 0.00 0.00 0.00 4.79
591 592 3.118454 CGTGTGCATGGGACGGAC 61.118 66.667 0.00 0.00 0.00 4.79
598 599 3.541093 AAACTGCGCGTGTGCATGG 62.541 57.895 8.43 0.87 45.26 3.66
599 600 2.051076 AAACTGCGCGTGTGCATG 60.051 55.556 8.43 6.01 45.26 4.06
600 601 2.252260 GAAACTGCGCGTGTGCAT 59.748 55.556 8.43 0.00 45.26 3.96
601 602 3.947841 GGAAACTGCGCGTGTGCA 61.948 61.111 8.43 7.95 43.95 4.57
602 603 3.947841 TGGAAACTGCGCGTGTGC 61.948 61.111 8.43 4.98 37.91 4.57
603 604 2.047151 AAGTGGAAACTGCGCGTGTG 62.047 55.000 8.43 0.19 0.00 3.82
604 605 1.817941 AAGTGGAAACTGCGCGTGT 60.818 52.632 8.43 4.28 0.00 4.49
605 606 1.369209 CAAGTGGAAACTGCGCGTG 60.369 57.895 8.43 3.52 0.00 5.34
606 607 3.022287 CAAGTGGAAACTGCGCGT 58.978 55.556 8.43 0.01 0.00 6.01
607 608 2.427410 GCAAGTGGAAACTGCGCG 60.427 61.111 0.00 0.00 0.00 6.86
608 609 2.427410 CGCAAGTGGAAACTGCGC 60.427 61.111 0.00 0.00 41.94 6.09
610 611 0.521291 TATGCGCAAGTGGAAACTGC 59.479 50.000 17.11 0.00 41.68 4.40
611 612 1.535028 TGTATGCGCAAGTGGAAACTG 59.465 47.619 17.11 0.00 41.68 3.16
612 613 1.890876 TGTATGCGCAAGTGGAAACT 58.109 45.000 17.11 0.00 41.68 2.66
613 614 2.919666 ATGTATGCGCAAGTGGAAAC 57.080 45.000 17.11 4.93 41.68 2.78
614 615 3.339141 TGTATGTATGCGCAAGTGGAAA 58.661 40.909 17.11 0.00 41.68 3.13
615 616 2.979240 TGTATGTATGCGCAAGTGGAA 58.021 42.857 17.11 0.00 41.68 3.53
616 617 2.682155 TGTATGTATGCGCAAGTGGA 57.318 45.000 17.11 0.00 41.68 4.02
617 618 3.121025 CGTATGTATGTATGCGCAAGTGG 60.121 47.826 17.11 0.00 41.68 4.00
618 619 3.489416 ACGTATGTATGTATGCGCAAGTG 59.511 43.478 17.11 0.00 39.33 3.16
619 620 3.713288 ACGTATGTATGTATGCGCAAGT 58.287 40.909 17.11 0.00 39.33 3.16
620 621 4.677832 TGTACGTATGTATGTATGCGCAAG 59.322 41.667 17.11 0.00 39.33 4.01
621 622 4.441744 GTGTACGTATGTATGTATGCGCAA 59.558 41.667 17.11 0.00 39.33 4.85
622 623 3.976306 GTGTACGTATGTATGTATGCGCA 59.024 43.478 14.96 14.96 39.33 6.09
623 624 3.362831 GGTGTACGTATGTATGTATGCGC 59.637 47.826 0.00 0.00 39.33 6.09
624 625 4.538917 TGGTGTACGTATGTATGTATGCG 58.461 43.478 0.00 0.00 41.10 4.73
625 626 5.285370 CGATGGTGTACGTATGTATGTATGC 59.715 44.000 0.00 0.00 32.11 3.14
626 627 5.285370 GCGATGGTGTACGTATGTATGTATG 59.715 44.000 0.00 0.00 32.11 2.39
627 628 5.396484 GCGATGGTGTACGTATGTATGTAT 58.604 41.667 0.00 0.00 32.11 2.29
628 629 4.611130 CGCGATGGTGTACGTATGTATGTA 60.611 45.833 0.00 0.00 32.11 2.29
629 630 3.635331 GCGATGGTGTACGTATGTATGT 58.365 45.455 0.00 0.00 32.11 2.29
630 631 2.655001 CGCGATGGTGTACGTATGTATG 59.345 50.000 0.00 0.00 32.11 2.39
631 632 2.919387 GCGCGATGGTGTACGTATGTAT 60.919 50.000 12.10 0.00 32.11 2.29
632 633 1.597690 GCGCGATGGTGTACGTATGTA 60.598 52.381 12.10 0.00 0.00 2.29
633 634 0.868602 GCGCGATGGTGTACGTATGT 60.869 55.000 12.10 0.00 0.00 2.29
634 635 1.844003 GCGCGATGGTGTACGTATG 59.156 57.895 12.10 0.00 0.00 2.39
635 636 1.656263 CGCGCGATGGTGTACGTAT 60.656 57.895 28.94 0.00 0.00 3.06
636 637 2.277437 CGCGCGATGGTGTACGTA 60.277 61.111 28.94 0.00 0.00 3.57
639 640 3.139118 GAAGCGCGCGATGGTGTAC 62.139 63.158 37.18 13.39 0.00 2.90
640 641 2.883730 GAAGCGCGCGATGGTGTA 60.884 61.111 37.18 0.00 0.00 2.90
645 646 4.051963 GATCGGAAGCGCGCGATG 62.052 66.667 37.18 16.79 32.54 3.84
649 650 4.873129 TGAGGATCGGAAGCGCGC 62.873 66.667 26.66 26.66 38.61 6.86
650 651 2.956964 GTGAGGATCGGAAGCGCG 60.957 66.667 0.00 0.00 38.61 6.86
651 652 1.590259 GAGTGAGGATCGGAAGCGC 60.590 63.158 0.00 0.00 38.61 5.92
652 653 1.298713 CGAGTGAGGATCGGAAGCG 60.299 63.158 0.00 0.00 38.61 4.68
653 654 1.590259 GCGAGTGAGGATCGGAAGC 60.590 63.158 0.00 0.00 40.50 3.86
654 655 0.030101 GAGCGAGTGAGGATCGGAAG 59.970 60.000 0.00 0.00 40.50 3.46
666 667 1.380403 CGGGAGACTGATGAGCGAGT 61.380 60.000 0.00 0.00 39.98 4.18
805 807 4.675303 TGGAGTGGGGGTGGAGGG 62.675 72.222 0.00 0.00 0.00 4.30
870 883 3.563224 AGCAGTGGCAGCTGGTCA 61.563 61.111 17.12 0.54 42.76 4.02
877 890 1.611474 TAGGAGAGCAGCAGTGGCAG 61.611 60.000 0.00 0.00 44.61 4.85
888 901 1.134551 CCTGAGTGCCTTTAGGAGAGC 60.135 57.143 0.00 0.00 37.39 4.09
897 910 1.954362 CTAGCTCGCCTGAGTGCCTT 61.954 60.000 0.00 0.00 44.48 4.35
1188 1201 3.017581 AGGCGGCCCTTGGAGAAT 61.018 61.111 17.02 0.00 38.74 2.40
1305 1318 1.378514 CTTCCACCGGATGTTGGGG 60.379 63.158 9.46 0.00 0.00 4.96
1441 1467 5.591067 CGGGTTGGGTGCTTAAGATAATTAA 59.409 40.000 6.67 0.00 0.00 1.40
1442 1468 5.127491 CGGGTTGGGTGCTTAAGATAATTA 58.873 41.667 6.67 0.00 0.00 1.40
1443 1469 3.951680 CGGGTTGGGTGCTTAAGATAATT 59.048 43.478 6.67 0.00 0.00 1.40
1444 1470 3.053917 ACGGGTTGGGTGCTTAAGATAAT 60.054 43.478 6.67 0.00 0.00 1.28
1461 1487 0.969409 GTCCTACTGCCACTACGGGT 60.969 60.000 0.00 0.00 34.06 5.28
1463 1489 0.172803 GTGTCCTACTGCCACTACGG 59.827 60.000 0.00 0.00 38.11 4.02
1478 1507 0.179161 AGAGCGTACGATGCAGTGTC 60.179 55.000 21.65 0.00 31.07 3.67
1536 1565 4.493220 GCTCTGAAGATTCGGAAAATGTCG 60.493 45.833 5.65 0.00 41.71 4.35
1670 1704 2.094026 TGCCTAGAATATGCGATGCGAT 60.094 45.455 0.00 0.00 34.75 4.58
1671 1705 1.272212 TGCCTAGAATATGCGATGCGA 59.728 47.619 0.00 0.00 34.75 5.10
1672 1706 1.713597 TGCCTAGAATATGCGATGCG 58.286 50.000 0.00 0.00 34.75 4.73
1673 1707 3.005554 ACATGCCTAGAATATGCGATGC 58.994 45.455 0.00 0.00 34.75 3.91
1674 1708 3.999001 ACACATGCCTAGAATATGCGATG 59.001 43.478 0.00 0.00 34.75 3.84
1759 1799 1.779025 GCAGGTGATATGTGCCGCTG 61.779 60.000 0.00 0.00 0.00 5.18
1873 1921 2.027625 CCCGTCTCGCTTGGTGAAC 61.028 63.158 0.00 0.00 0.00 3.18
1917 1965 0.173255 GGCAAATCACCACCCAATCG 59.827 55.000 0.00 0.00 0.00 3.34
1938 1986 0.528017 TGGACGTCAAGCTAGCTGAG 59.472 55.000 20.16 14.46 0.00 3.35
1945 1993 2.101582 GGTAGATGATGGACGTCAAGCT 59.898 50.000 18.91 10.00 37.02 3.74
1946 1994 2.474816 GGTAGATGATGGACGTCAAGC 58.525 52.381 18.91 10.06 37.02 4.01
1947 1995 2.543861 CGGGTAGATGATGGACGTCAAG 60.544 54.545 18.91 0.00 37.02 3.02
1976 2026 0.174845 TTGGGTTACTCGCAGATCCG 59.825 55.000 0.00 0.00 40.01 4.18
1985 2035 2.945668 GCTGATGGATGTTGGGTTACTC 59.054 50.000 0.00 0.00 0.00 2.59
1988 2038 2.016604 GCGCTGATGGATGTTGGGTTA 61.017 52.381 0.00 0.00 0.00 2.85
2070 2120 5.640357 AGGCAGTAAAATGAAATGCACATTG 59.360 36.000 2.13 0.00 37.89 2.82
2221 2278 5.837438 AGTTACTTTGACCACCACTACTACT 59.163 40.000 0.00 0.00 0.00 2.57
2230 2287 3.579151 AGAGAGGAGTTACTTTGACCACC 59.421 47.826 0.00 0.00 0.00 4.61
2253 2310 6.220930 CCACTACAGCTAGACTAGAGACTAG 58.779 48.000 13.91 10.52 41.24 2.57
2254 2311 5.453621 GCCACTACAGCTAGACTAGAGACTA 60.454 48.000 13.91 0.00 0.00 2.59
2269 2340 4.516698 ACAAAACATTCAGAGCCACTACAG 59.483 41.667 0.00 0.00 0.00 2.74
2271 2342 6.455646 CGATACAAAACATTCAGAGCCACTAC 60.456 42.308 0.00 0.00 0.00 2.73
2272 2343 5.580691 CGATACAAAACATTCAGAGCCACTA 59.419 40.000 0.00 0.00 0.00 2.74
2273 2344 4.393062 CGATACAAAACATTCAGAGCCACT 59.607 41.667 0.00 0.00 0.00 4.00
2357 2448 1.336887 CGACTACCACAAGGACCACAG 60.337 57.143 0.00 0.00 38.69 3.66
2371 2471 5.038033 AGCACGTACTACTACTACGACTAC 58.962 45.833 5.06 0.00 39.50 2.73
2372 2472 5.037385 CAGCACGTACTACTACTACGACTA 58.963 45.833 5.06 0.00 39.50 2.59
2373 2473 3.862267 CAGCACGTACTACTACTACGACT 59.138 47.826 5.06 0.05 39.50 4.18
2374 2474 3.000724 CCAGCACGTACTACTACTACGAC 59.999 52.174 5.06 0.00 39.50 4.34
2375 2475 3.190079 CCAGCACGTACTACTACTACGA 58.810 50.000 5.06 0.00 39.50 3.43
2376 2476 2.932614 ACCAGCACGTACTACTACTACG 59.067 50.000 0.00 0.00 42.22 3.51
2510 2632 1.060937 CGATCGAAAGCAAAGGCCG 59.939 57.895 10.26 0.00 42.56 6.13
2563 2685 1.339055 GGCATGCACTTCTGTACCAGA 60.339 52.381 21.36 0.00 38.87 3.86
2606 2731 3.634072 GCTAGCTCCGTGCATGCG 61.634 66.667 14.09 0.00 45.94 4.73
2625 2750 3.435186 GCTCAGCTTTGACCGGCC 61.435 66.667 0.00 0.00 0.00 6.13
2654 2779 6.183360 CGTTGGAGTATTTTGAATCTCCTTCC 60.183 42.308 10.66 0.00 44.57 3.46
2682 2820 6.309357 TCCACACTCCACTCTACTTTACTTA 58.691 40.000 0.00 0.00 0.00 2.24
2683 2821 5.145564 TCCACACTCCACTCTACTTTACTT 58.854 41.667 0.00 0.00 0.00 2.24
2685 2823 4.523558 ACTCCACACTCCACTCTACTTTAC 59.476 45.833 0.00 0.00 0.00 2.01
2686 2824 4.523173 CACTCCACACTCCACTCTACTTTA 59.477 45.833 0.00 0.00 0.00 1.85
2687 2825 3.322254 CACTCCACACTCCACTCTACTTT 59.678 47.826 0.00 0.00 0.00 2.66
2688 2826 2.894126 CACTCCACACTCCACTCTACTT 59.106 50.000 0.00 0.00 0.00 2.24
2689 2827 2.520069 CACTCCACACTCCACTCTACT 58.480 52.381 0.00 0.00 0.00 2.57
2690 2828 1.546476 CCACTCCACACTCCACTCTAC 59.454 57.143 0.00 0.00 0.00 2.59
2691 2829 1.147191 ACCACTCCACACTCCACTCTA 59.853 52.381 0.00 0.00 0.00 2.43
2694 2832 0.759346 GAACCACTCCACACTCCACT 59.241 55.000 0.00 0.00 0.00 4.00
2696 2834 0.758734 CAGAACCACTCCACACTCCA 59.241 55.000 0.00 0.00 0.00 3.86
2697 2835 1.001406 CTCAGAACCACTCCACACTCC 59.999 57.143 0.00 0.00 0.00 3.85
2701 2840 1.688735 CTGTCTCAGAACCACTCCACA 59.311 52.381 0.00 0.00 32.44 4.17
2712 2851 1.880675 GTTCGGTCTCACTGTCTCAGA 59.119 52.381 3.70 0.00 35.18 3.27
2757 2896 2.249844 AGTGGACGGGTTGTTAACAG 57.750 50.000 8.56 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.