Multiple sequence alignment - TraesCS5D01G245800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G245800 chr5D 100.000 3065 0 0 1 3065 354032572 354029508 0.000000e+00 5661.0
1 TraesCS5D01G245800 chr5D 85.629 1169 102 30 744 1908 354890810 354891916 0.000000e+00 1168.0
2 TraesCS5D01G245800 chr5D 93.624 298 15 3 291 584 339652123 339652420 2.800000e-120 442.0
3 TraesCS5D01G245800 chr5D 93.333 300 15 5 291 587 347680062 347680359 3.630000e-119 438.0
4 TraesCS5D01G245800 chr5D 95.283 212 10 0 1602 1813 354837331 354837542 1.360000e-88 337.0
5 TraesCS5D01G245800 chr5D 86.885 61 5 3 86 143 55583538 55583598 7.090000e-07 65.8
6 TraesCS5D01G245800 chr5A 89.829 1927 122 40 700 2582 454817514 454815618 0.000000e+00 2405.0
7 TraesCS5D01G245800 chr5A 84.465 1178 116 32 749 1908 457003405 457004533 0.000000e+00 1099.0
8 TraesCS5D01G245800 chr5A 79.819 664 85 28 1098 1751 456974799 456975423 3.630000e-119 438.0
9 TraesCS5D01G245800 chr5A 87.640 267 21 6 2580 2834 454815556 454815290 1.790000e-77 300.0
10 TraesCS5D01G245800 chr5A 88.034 117 4 6 2833 2948 454814968 454814861 2.480000e-26 130.0
11 TraesCS5D01G245800 chr5A 91.011 89 8 0 585 673 454819823 454819735 1.490000e-23 121.0
12 TraesCS5D01G245800 chr5B 93.255 1364 62 13 705 2061 418375015 418373675 0.000000e+00 1982.0
13 TraesCS5D01G245800 chr5B 85.860 1174 125 23 744 1908 419643983 419645124 0.000000e+00 1210.0
14 TraesCS5D01G245800 chr5B 91.727 278 15 4 2585 2854 418371748 418371471 2.230000e-101 379.0
15 TraesCS5D01G245800 chr5B 86.235 247 23 5 1602 1837 419620473 419620719 1.090000e-64 257.0
16 TraesCS5D01G245800 chr5B 94.643 112 2 1 2949 3060 418371368 418371261 1.460000e-38 171.0
17 TraesCS5D01G245800 chr5B 88.636 88 10 0 585 672 418376759 418376672 1.160000e-19 108.0
18 TraesCS5D01G245800 chr1D 93.443 305 16 4 291 592 411905191 411904888 1.680000e-122 449.0
19 TraesCS5D01G245800 chr6B 93.333 300 16 4 291 587 460488479 460488777 1.010000e-119 440.0
20 TraesCS5D01G245800 chr6B 95.349 43 1 1 2334 2376 50125904 50125863 1.970000e-07 67.6
21 TraesCS5D01G245800 chr3D 93.333 300 16 4 291 587 65174059 65174357 1.010000e-119 440.0
22 TraesCS5D01G245800 chr3D 92.208 308 20 4 291 595 481230411 481230105 1.690000e-117 433.0
23 TraesCS5D01G245800 chr3A 93.333 300 16 4 291 587 340266217 340265919 1.010000e-119 440.0
24 TraesCS5D01G245800 chr7A 93.023 301 18 3 291 588 505499038 505498738 1.300000e-118 436.0
25 TraesCS5D01G245800 chr7A 91.489 47 3 1 2333 2379 435870189 435870234 2.550000e-06 63.9
26 TraesCS5D01G245800 chr1A 93.311 299 15 5 292 587 285590322 285590026 1.300000e-118 436.0
27 TraesCS5D01G245800 chr2A 95.556 45 2 0 2238 2282 203725343 203725299 4.240000e-09 73.1
28 TraesCS5D01G245800 chr2D 95.556 45 1 1 2334 2378 194453204 194453247 1.520000e-08 71.3
29 TraesCS5D01G245800 chr7D 76.974 152 12 10 2238 2375 34373460 34373318 7.090000e-07 65.8
30 TraesCS5D01G245800 chr4D 92.857 42 2 1 2334 2375 230472956 230472996 3.300000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G245800 chr5D 354029508 354032572 3064 True 5661 5661 100.00000 1 3065 1 chr5D.!!$R1 3064
1 TraesCS5D01G245800 chr5D 354890810 354891916 1106 False 1168 1168 85.62900 744 1908 1 chr5D.!!$F5 1164
2 TraesCS5D01G245800 chr5A 457003405 457004533 1128 False 1099 1099 84.46500 749 1908 1 chr5A.!!$F2 1159
3 TraesCS5D01G245800 chr5A 454814861 454819823 4962 True 739 2405 89.12850 585 2948 4 chr5A.!!$R1 2363
4 TraesCS5D01G245800 chr5A 456974799 456975423 624 False 438 438 79.81900 1098 1751 1 chr5A.!!$F1 653
5 TraesCS5D01G245800 chr5B 419643983 419645124 1141 False 1210 1210 85.86000 744 1908 1 chr5B.!!$F2 1164
6 TraesCS5D01G245800 chr5B 418371261 418376759 5498 True 660 1982 92.06525 585 3060 4 chr5B.!!$R1 2475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.033504 TTATGGGCGGCGATCTCTTC 59.966 55.0 12.98 0.0 0.00 2.87 F
268 269 0.034337 TGAGGGCAGTGGTTTACGTC 59.966 55.0 0.00 0.0 0.00 4.34 F
582 583 0.034380 ACTCTTCATCGGACGGAGGA 60.034 55.0 0.00 0.0 32.76 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 3300 0.179020 TCTGGTGGAGTTGCTTGTGG 60.179 55.0 0.0 0.0 0.0 4.17 R
1275 3545 0.939419 GCCGTTACCTGTTTCGTGTT 59.061 50.0 0.0 0.0 0.0 3.32 R
2101 4412 0.976641 ACAACAGCCCTCTCGAATCA 59.023 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.432444 ACATGTGTGTTTGGGGTATCG 58.568 47.619 0.00 0.00 34.01 2.92
24 25 2.224670 ACATGTGTGTTTGGGGTATCGT 60.225 45.455 0.00 0.00 34.01 3.73
25 26 1.885560 TGTGTGTTTGGGGTATCGTG 58.114 50.000 0.00 0.00 0.00 4.35
26 27 1.141254 TGTGTGTTTGGGGTATCGTGT 59.859 47.619 0.00 0.00 0.00 4.49
27 28 1.533731 GTGTGTTTGGGGTATCGTGTG 59.466 52.381 0.00 0.00 0.00 3.82
28 29 1.141254 TGTGTTTGGGGTATCGTGTGT 59.859 47.619 0.00 0.00 0.00 3.72
29 30 1.533731 GTGTTTGGGGTATCGTGTGTG 59.466 52.381 0.00 0.00 0.00 3.82
30 31 0.519961 GTTTGGGGTATCGTGTGTGC 59.480 55.000 0.00 0.00 0.00 4.57
31 32 0.951525 TTTGGGGTATCGTGTGTGCG 60.952 55.000 0.00 0.00 0.00 5.34
32 33 3.192922 GGGGTATCGTGTGTGCGC 61.193 66.667 0.00 0.00 0.00 6.09
33 34 3.192922 GGGTATCGTGTGTGCGCC 61.193 66.667 4.18 0.00 0.00 6.53
34 35 2.433491 GGTATCGTGTGTGCGCCA 60.433 61.111 4.18 0.00 0.00 5.69
35 36 2.736682 GGTATCGTGTGTGCGCCAC 61.737 63.158 18.49 18.49 44.78 5.01
36 37 1.736645 GTATCGTGTGTGCGCCACT 60.737 57.895 23.38 10.63 44.81 4.00
37 38 1.005512 TATCGTGTGTGCGCCACTT 60.006 52.632 23.38 10.28 44.81 3.16
38 39 0.244178 TATCGTGTGTGCGCCACTTA 59.756 50.000 23.38 12.85 44.81 2.24
39 40 1.014044 ATCGTGTGTGCGCCACTTAG 61.014 55.000 23.38 16.27 44.81 2.18
40 41 2.556287 GTGTGTGCGCCACTTAGC 59.444 61.111 23.38 11.57 44.81 3.09
51 52 1.792949 GCCACTTAGCGGATTATGACG 59.207 52.381 0.00 0.00 0.00 4.35
52 53 2.404215 CCACTTAGCGGATTATGACGG 58.596 52.381 0.00 0.00 0.00 4.79
53 54 2.223971 CCACTTAGCGGATTATGACGGT 60.224 50.000 0.00 0.00 43.70 4.83
54 55 3.454375 CACTTAGCGGATTATGACGGTT 58.546 45.455 0.00 0.00 41.41 4.44
55 56 3.869246 CACTTAGCGGATTATGACGGTTT 59.131 43.478 0.00 0.00 41.41 3.27
56 57 4.331717 CACTTAGCGGATTATGACGGTTTT 59.668 41.667 0.00 0.00 41.41 2.43
57 58 4.569564 ACTTAGCGGATTATGACGGTTTTC 59.430 41.667 0.00 0.00 41.41 2.29
58 59 2.980568 AGCGGATTATGACGGTTTTCA 58.019 42.857 0.00 0.00 37.57 2.69
59 60 3.541632 AGCGGATTATGACGGTTTTCAT 58.458 40.909 0.00 0.00 37.57 2.57
60 61 3.312421 AGCGGATTATGACGGTTTTCATG 59.688 43.478 0.00 0.00 37.57 3.07
61 62 3.617669 CGGATTATGACGGTTTTCATGC 58.382 45.455 0.00 0.00 36.84 4.06
62 63 3.617669 GGATTATGACGGTTTTCATGCG 58.382 45.455 0.00 0.00 36.84 4.73
63 64 3.548014 GGATTATGACGGTTTTCATGCGG 60.548 47.826 0.00 0.00 36.84 5.69
64 65 0.730265 TATGACGGTTTTCATGCGGC 59.270 50.000 0.00 0.00 36.84 6.53
65 66 0.960364 ATGACGGTTTTCATGCGGCT 60.960 50.000 0.00 0.00 34.79 5.52
66 67 1.169661 TGACGGTTTTCATGCGGCTT 61.170 50.000 0.00 0.00 0.00 4.35
67 68 0.039527 GACGGTTTTCATGCGGCTTT 60.040 50.000 0.00 0.00 0.00 3.51
68 69 0.387565 ACGGTTTTCATGCGGCTTTT 59.612 45.000 0.00 0.00 0.00 2.27
69 70 1.202475 ACGGTTTTCATGCGGCTTTTT 60.202 42.857 0.00 0.00 0.00 1.94
70 71 2.034812 ACGGTTTTCATGCGGCTTTTTA 59.965 40.909 0.00 0.00 0.00 1.52
71 72 2.661195 CGGTTTTCATGCGGCTTTTTAG 59.339 45.455 0.00 0.00 0.00 1.85
72 73 3.649073 GGTTTTCATGCGGCTTTTTAGT 58.351 40.909 0.00 0.00 0.00 2.24
73 74 4.614078 CGGTTTTCATGCGGCTTTTTAGTA 60.614 41.667 0.00 0.00 0.00 1.82
74 75 5.224135 GGTTTTCATGCGGCTTTTTAGTAA 58.776 37.500 0.00 0.00 0.00 2.24
75 76 5.867174 GGTTTTCATGCGGCTTTTTAGTAAT 59.133 36.000 0.00 0.00 0.00 1.89
76 77 6.367695 GGTTTTCATGCGGCTTTTTAGTAATT 59.632 34.615 0.00 0.00 0.00 1.40
77 78 7.542824 GGTTTTCATGCGGCTTTTTAGTAATTA 59.457 33.333 0.00 0.00 0.00 1.40
78 79 8.917655 GTTTTCATGCGGCTTTTTAGTAATTAA 58.082 29.630 0.00 0.00 0.00 1.40
79 80 8.455598 TTTCATGCGGCTTTTTAGTAATTAAC 57.544 30.769 0.00 0.00 0.00 2.01
80 81 7.147143 TCATGCGGCTTTTTAGTAATTAACA 57.853 32.000 0.00 0.00 0.00 2.41
81 82 7.594714 TCATGCGGCTTTTTAGTAATTAACAA 58.405 30.769 0.00 0.00 0.00 2.83
82 83 7.753132 TCATGCGGCTTTTTAGTAATTAACAAG 59.247 33.333 0.00 0.00 33.90 3.16
83 84 7.204496 TGCGGCTTTTTAGTAATTAACAAGA 57.796 32.000 0.00 0.00 32.99 3.02
84 85 7.822658 TGCGGCTTTTTAGTAATTAACAAGAT 58.177 30.769 0.00 0.00 32.99 2.40
85 86 8.948145 TGCGGCTTTTTAGTAATTAACAAGATA 58.052 29.630 0.00 0.00 32.99 1.98
86 87 9.777575 GCGGCTTTTTAGTAATTAACAAGATAA 57.222 29.630 0.00 0.00 32.99 1.75
126 127 7.878477 TTGATGAATGAGACAAATCTTTTGC 57.122 32.000 0.06 0.00 34.34 3.68
127 128 6.392354 TGATGAATGAGACAAATCTTTTGCC 58.608 36.000 0.06 0.00 34.34 4.52
128 129 6.209986 TGATGAATGAGACAAATCTTTTGCCT 59.790 34.615 0.06 0.00 34.34 4.75
129 130 6.409524 TGAATGAGACAAATCTTTTGCCTT 57.590 33.333 0.06 0.00 34.34 4.35
130 131 6.449698 TGAATGAGACAAATCTTTTGCCTTC 58.550 36.000 0.06 0.00 34.34 3.46
131 132 4.488126 TGAGACAAATCTTTTGCCTTCG 57.512 40.909 0.06 0.00 34.34 3.79
132 133 3.882888 TGAGACAAATCTTTTGCCTTCGT 59.117 39.130 0.06 0.00 34.34 3.85
133 134 4.338118 TGAGACAAATCTTTTGCCTTCGTT 59.662 37.500 0.06 0.00 34.34 3.85
134 135 5.163561 TGAGACAAATCTTTTGCCTTCGTTT 60.164 36.000 0.06 0.00 34.34 3.60
135 136 6.038825 TGAGACAAATCTTTTGCCTTCGTTTA 59.961 34.615 0.06 0.00 34.34 2.01
136 137 6.801575 AGACAAATCTTTTGCCTTCGTTTAA 58.198 32.000 0.06 0.00 0.00 1.52
137 138 7.262048 AGACAAATCTTTTGCCTTCGTTTAAA 58.738 30.769 0.06 0.00 0.00 1.52
138 139 7.762159 AGACAAATCTTTTGCCTTCGTTTAAAA 59.238 29.630 0.06 0.00 0.00 1.52
139 140 8.257830 ACAAATCTTTTGCCTTCGTTTAAAAA 57.742 26.923 0.06 0.00 0.00 1.94
173 174 6.894339 ACCACTACCTTGTTTCTTAATTGG 57.106 37.500 0.00 0.00 0.00 3.16
174 175 6.370453 ACCACTACCTTGTTTCTTAATTGGT 58.630 36.000 0.00 0.00 0.00 3.67
175 176 6.489022 ACCACTACCTTGTTTCTTAATTGGTC 59.511 38.462 0.00 0.00 0.00 4.02
176 177 6.488683 CCACTACCTTGTTTCTTAATTGGTCA 59.511 38.462 0.00 0.00 0.00 4.02
177 178 7.013846 CCACTACCTTGTTTCTTAATTGGTCAA 59.986 37.037 0.00 0.00 0.00 3.18
178 179 8.410141 CACTACCTTGTTTCTTAATTGGTCAAA 58.590 33.333 0.00 0.00 0.00 2.69
179 180 8.630037 ACTACCTTGTTTCTTAATTGGTCAAAG 58.370 33.333 0.00 0.00 0.00 2.77
180 181 6.816136 ACCTTGTTTCTTAATTGGTCAAAGG 58.184 36.000 0.00 0.00 0.00 3.11
181 182 5.696270 CCTTGTTTCTTAATTGGTCAAAGGC 59.304 40.000 0.00 0.00 0.00 4.35
182 183 5.860941 TGTTTCTTAATTGGTCAAAGGCA 57.139 34.783 0.00 0.00 0.00 4.75
183 184 6.227298 TGTTTCTTAATTGGTCAAAGGCAA 57.773 33.333 0.00 0.00 0.00 4.52
184 185 6.279882 TGTTTCTTAATTGGTCAAAGGCAAG 58.720 36.000 0.00 0.00 0.00 4.01
185 186 6.127196 TGTTTCTTAATTGGTCAAAGGCAAGT 60.127 34.615 0.00 0.00 0.00 3.16
186 187 6.478512 TTCTTAATTGGTCAAAGGCAAGTT 57.521 33.333 0.00 0.00 0.00 2.66
187 188 6.478512 TCTTAATTGGTCAAAGGCAAGTTT 57.521 33.333 0.00 0.00 0.00 2.66
188 189 6.512297 TCTTAATTGGTCAAAGGCAAGTTTC 58.488 36.000 0.00 0.00 0.00 2.78
189 190 6.323739 TCTTAATTGGTCAAAGGCAAGTTTCT 59.676 34.615 0.00 0.00 0.00 2.52
190 191 7.504238 TCTTAATTGGTCAAAGGCAAGTTTCTA 59.496 33.333 0.00 0.00 0.00 2.10
191 192 6.670695 AATTGGTCAAAGGCAAGTTTCTAT 57.329 33.333 0.00 0.00 0.00 1.98
192 193 5.452078 TTGGTCAAAGGCAAGTTTCTATG 57.548 39.130 0.00 0.00 0.00 2.23
193 194 4.469657 TGGTCAAAGGCAAGTTTCTATGT 58.530 39.130 0.00 0.00 0.00 2.29
194 195 5.626142 TGGTCAAAGGCAAGTTTCTATGTA 58.374 37.500 0.00 0.00 0.00 2.29
195 196 5.705441 TGGTCAAAGGCAAGTTTCTATGTAG 59.295 40.000 0.00 0.00 0.00 2.74
196 197 5.938125 GGTCAAAGGCAAGTTTCTATGTAGA 59.062 40.000 0.00 0.00 0.00 2.59
197 198 6.128254 GGTCAAAGGCAAGTTTCTATGTAGAC 60.128 42.308 0.00 0.00 30.81 2.59
198 199 6.426937 GTCAAAGGCAAGTTTCTATGTAGACA 59.573 38.462 0.00 0.00 30.81 3.41
199 200 6.426937 TCAAAGGCAAGTTTCTATGTAGACAC 59.573 38.462 0.00 0.00 34.16 3.67
200 201 4.495422 AGGCAAGTTTCTATGTAGACACG 58.505 43.478 1.83 0.00 37.90 4.49
201 202 4.021368 AGGCAAGTTTCTATGTAGACACGT 60.021 41.667 1.83 0.00 37.90 4.49
202 203 4.091509 GGCAAGTTTCTATGTAGACACGTG 59.908 45.833 15.48 15.48 41.86 4.49
203 204 4.921515 GCAAGTTTCTATGTAGACACGTGA 59.078 41.667 25.01 0.00 41.66 4.35
204 205 5.164080 GCAAGTTTCTATGTAGACACGTGAC 60.164 44.000 25.01 17.23 41.66 3.67
205 206 5.700722 AGTTTCTATGTAGACACGTGACA 57.299 39.130 25.01 16.86 37.90 3.58
206 207 5.700846 AGTTTCTATGTAGACACGTGACAG 58.299 41.667 25.01 9.21 37.90 3.51
207 208 3.759527 TCTATGTAGACACGTGACAGC 57.240 47.619 25.01 13.15 0.00 4.40
208 209 3.078837 TCTATGTAGACACGTGACAGCA 58.921 45.455 25.01 18.25 0.00 4.41
209 210 3.694566 TCTATGTAGACACGTGACAGCAT 59.305 43.478 25.01 23.07 0.00 3.79
210 211 2.347697 TGTAGACACGTGACAGCATC 57.652 50.000 25.01 8.11 0.00 3.91
211 212 1.260206 GTAGACACGTGACAGCATCG 58.740 55.000 25.01 0.00 0.00 3.84
212 213 0.170339 TAGACACGTGACAGCATCGG 59.830 55.000 25.01 0.00 0.00 4.18
213 214 2.730672 GACACGTGACAGCATCGGC 61.731 63.158 25.01 0.00 41.61 5.54
228 229 3.050275 GGCTTATGGGCGGCGATC 61.050 66.667 12.98 1.22 0.00 3.69
229 230 2.031163 GCTTATGGGCGGCGATCT 59.969 61.111 12.98 0.00 0.00 2.75
230 231 2.029844 GCTTATGGGCGGCGATCTC 61.030 63.158 12.98 0.00 0.00 2.75
231 232 1.668294 CTTATGGGCGGCGATCTCT 59.332 57.895 12.98 0.00 0.00 3.10
232 233 0.034059 CTTATGGGCGGCGATCTCTT 59.966 55.000 12.98 0.00 0.00 2.85
233 234 0.033504 TTATGGGCGGCGATCTCTTC 59.966 55.000 12.98 0.00 0.00 2.87
234 235 0.827925 TATGGGCGGCGATCTCTTCT 60.828 55.000 12.98 0.00 0.00 2.85
235 236 1.690219 ATGGGCGGCGATCTCTTCTT 61.690 55.000 12.98 0.00 0.00 2.52
236 237 1.040893 TGGGCGGCGATCTCTTCTTA 61.041 55.000 12.98 0.00 0.00 2.10
237 238 0.104304 GGGCGGCGATCTCTTCTTAA 59.896 55.000 12.98 0.00 0.00 1.85
238 239 1.472728 GGGCGGCGATCTCTTCTTAAA 60.473 52.381 12.98 0.00 0.00 1.52
239 240 2.484889 GGCGGCGATCTCTTCTTAAAT 58.515 47.619 12.98 0.00 0.00 1.40
240 241 2.221981 GGCGGCGATCTCTTCTTAAATG 59.778 50.000 12.98 0.00 0.00 2.32
241 242 2.348966 GCGGCGATCTCTTCTTAAATGC 60.349 50.000 12.98 0.00 0.00 3.56
242 243 3.126831 CGGCGATCTCTTCTTAAATGCT 58.873 45.455 0.00 0.00 0.00 3.79
243 244 3.183373 CGGCGATCTCTTCTTAAATGCTC 59.817 47.826 0.00 0.00 0.00 4.26
244 245 4.122776 GGCGATCTCTTCTTAAATGCTCA 58.877 43.478 0.00 0.00 0.00 4.26
245 246 4.754114 GGCGATCTCTTCTTAAATGCTCAT 59.246 41.667 0.00 0.00 0.00 2.90
246 247 5.107143 GGCGATCTCTTCTTAAATGCTCATC 60.107 44.000 0.00 0.00 0.00 2.92
247 248 5.388268 GCGATCTCTTCTTAAATGCTCATCG 60.388 44.000 0.00 0.00 34.06 3.84
248 249 5.689514 CGATCTCTTCTTAAATGCTCATCGT 59.310 40.000 0.00 0.00 0.00 3.73
249 250 6.199908 CGATCTCTTCTTAAATGCTCATCGTT 59.800 38.462 0.00 0.00 0.00 3.85
250 251 6.653273 TCTCTTCTTAAATGCTCATCGTTG 57.347 37.500 0.00 0.00 0.00 4.10
251 252 6.398095 TCTCTTCTTAAATGCTCATCGTTGA 58.602 36.000 0.00 0.00 0.00 3.18
259 260 2.759783 CTCATCGTTGAGGGCAGTG 58.240 57.895 14.54 0.00 44.78 3.66
260 261 0.742281 CTCATCGTTGAGGGCAGTGG 60.742 60.000 14.54 0.00 44.78 4.00
261 262 1.003355 CATCGTTGAGGGCAGTGGT 60.003 57.895 0.00 0.00 0.00 4.16
262 263 0.606401 CATCGTTGAGGGCAGTGGTT 60.606 55.000 0.00 0.00 0.00 3.67
263 264 0.110486 ATCGTTGAGGGCAGTGGTTT 59.890 50.000 0.00 0.00 0.00 3.27
264 265 0.759959 TCGTTGAGGGCAGTGGTTTA 59.240 50.000 0.00 0.00 0.00 2.01
265 266 0.872388 CGTTGAGGGCAGTGGTTTAC 59.128 55.000 0.00 0.00 0.00 2.01
266 267 0.872388 GTTGAGGGCAGTGGTTTACG 59.128 55.000 0.00 0.00 0.00 3.18
267 268 0.470766 TTGAGGGCAGTGGTTTACGT 59.529 50.000 0.00 0.00 0.00 3.57
268 269 0.034337 TGAGGGCAGTGGTTTACGTC 59.966 55.000 0.00 0.00 0.00 4.34
269 270 0.320697 GAGGGCAGTGGTTTACGTCT 59.679 55.000 0.00 0.00 0.00 4.18
270 271 0.034896 AGGGCAGTGGTTTACGTCTG 59.965 55.000 0.00 0.00 0.00 3.51
271 272 0.034337 GGGCAGTGGTTTACGTCTGA 59.966 55.000 0.00 0.00 0.00 3.27
272 273 1.338769 GGGCAGTGGTTTACGTCTGAT 60.339 52.381 0.00 0.00 0.00 2.90
273 274 2.000447 GGCAGTGGTTTACGTCTGATC 59.000 52.381 0.00 0.00 0.00 2.92
274 275 2.353803 GGCAGTGGTTTACGTCTGATCT 60.354 50.000 0.00 0.00 0.00 2.75
275 276 2.924290 GCAGTGGTTTACGTCTGATCTC 59.076 50.000 0.00 0.00 0.00 2.75
276 277 3.172050 CAGTGGTTTACGTCTGATCTCG 58.828 50.000 0.00 0.00 0.00 4.04
277 278 2.818432 AGTGGTTTACGTCTGATCTCGT 59.182 45.455 13.38 13.38 42.82 4.18
278 279 2.915463 GTGGTTTACGTCTGATCTCGTG 59.085 50.000 16.65 0.00 40.50 4.35
279 280 1.918609 GGTTTACGTCTGATCTCGTGC 59.081 52.381 16.65 9.49 40.50 5.34
280 281 2.415625 GGTTTACGTCTGATCTCGTGCT 60.416 50.000 16.65 0.00 40.50 4.40
281 282 3.243336 GTTTACGTCTGATCTCGTGCTT 58.757 45.455 16.65 0.00 40.50 3.91
282 283 3.570926 TTACGTCTGATCTCGTGCTTT 57.429 42.857 16.65 0.00 40.50 3.51
283 284 1.983972 ACGTCTGATCTCGTGCTTTC 58.016 50.000 9.49 0.00 38.85 2.62
284 285 1.542030 ACGTCTGATCTCGTGCTTTCT 59.458 47.619 9.49 0.00 38.85 2.52
285 286 2.747989 ACGTCTGATCTCGTGCTTTCTA 59.252 45.455 9.49 0.00 38.85 2.10
286 287 3.378742 ACGTCTGATCTCGTGCTTTCTAT 59.621 43.478 9.49 0.00 38.85 1.98
287 288 3.728221 CGTCTGATCTCGTGCTTTCTATG 59.272 47.826 0.00 0.00 0.00 2.23
288 289 4.677584 GTCTGATCTCGTGCTTTCTATGT 58.322 43.478 0.00 0.00 0.00 2.29
289 290 5.504173 CGTCTGATCTCGTGCTTTCTATGTA 60.504 44.000 0.00 0.00 0.00 2.29
290 291 5.683743 GTCTGATCTCGTGCTTTCTATGTAC 59.316 44.000 0.00 0.00 0.00 2.90
291 292 5.590663 TCTGATCTCGTGCTTTCTATGTACT 59.409 40.000 0.00 0.00 0.00 2.73
292 293 5.822278 TGATCTCGTGCTTTCTATGTACTC 58.178 41.667 0.00 0.00 0.00 2.59
293 294 4.634184 TCTCGTGCTTTCTATGTACTCC 57.366 45.455 0.00 0.00 0.00 3.85
294 295 3.064958 TCTCGTGCTTTCTATGTACTCCG 59.935 47.826 0.00 0.00 0.00 4.63
295 296 2.751259 TCGTGCTTTCTATGTACTCCGT 59.249 45.455 0.00 0.00 0.00 4.69
296 297 3.106672 CGTGCTTTCTATGTACTCCGTC 58.893 50.000 0.00 0.00 0.00 4.79
297 298 3.445857 GTGCTTTCTATGTACTCCGTCC 58.554 50.000 0.00 0.00 0.00 4.79
298 299 2.098607 TGCTTTCTATGTACTCCGTCCG 59.901 50.000 0.00 0.00 0.00 4.79
299 300 2.098770 GCTTTCTATGTACTCCGTCCGT 59.901 50.000 0.00 0.00 0.00 4.69
300 301 3.692576 CTTTCTATGTACTCCGTCCGTG 58.307 50.000 0.00 0.00 0.00 4.94
301 302 2.696989 TCTATGTACTCCGTCCGTGA 57.303 50.000 0.00 0.00 0.00 4.35
302 303 2.989909 TCTATGTACTCCGTCCGTGAA 58.010 47.619 0.00 0.00 0.00 3.18
303 304 2.941064 TCTATGTACTCCGTCCGTGAAG 59.059 50.000 0.00 0.00 0.00 3.02
304 305 1.830279 ATGTACTCCGTCCGTGAAGA 58.170 50.000 0.00 0.00 0.00 2.87
305 306 1.162698 TGTACTCCGTCCGTGAAGAG 58.837 55.000 0.00 0.00 0.00 2.85
306 307 1.163554 GTACTCCGTCCGTGAAGAGT 58.836 55.000 0.00 0.00 42.13 3.24
307 308 2.289631 TGTACTCCGTCCGTGAAGAGTA 60.290 50.000 0.00 0.00 40.07 2.59
308 309 2.125773 ACTCCGTCCGTGAAGAGTAT 57.874 50.000 0.00 0.00 37.81 2.12
309 310 3.272574 ACTCCGTCCGTGAAGAGTATA 57.727 47.619 0.00 0.00 37.81 1.47
310 311 2.941720 ACTCCGTCCGTGAAGAGTATAC 59.058 50.000 0.00 0.00 37.81 1.47
311 312 2.941064 CTCCGTCCGTGAAGAGTATACA 59.059 50.000 5.50 0.00 0.00 2.29
312 313 3.548770 TCCGTCCGTGAAGAGTATACAT 58.451 45.455 5.50 0.00 0.00 2.29
313 314 3.562973 TCCGTCCGTGAAGAGTATACATC 59.437 47.826 5.50 1.31 0.00 3.06
314 315 3.564644 CCGTCCGTGAAGAGTATACATCT 59.435 47.826 5.50 2.60 0.00 2.90
315 316 4.753610 CCGTCCGTGAAGAGTATACATCTA 59.246 45.833 5.50 0.00 0.00 1.98
316 317 5.107026 CCGTCCGTGAAGAGTATACATCTAG 60.107 48.000 5.50 0.00 0.00 2.43
317 318 5.695363 CGTCCGTGAAGAGTATACATCTAGA 59.305 44.000 5.50 0.00 0.00 2.43
318 319 6.202379 CGTCCGTGAAGAGTATACATCTAGAA 59.798 42.308 5.50 0.00 0.00 2.10
319 320 7.254692 CGTCCGTGAAGAGTATACATCTAGAAA 60.255 40.741 5.50 0.00 0.00 2.52
320 321 8.569641 GTCCGTGAAGAGTATACATCTAGAAAT 58.430 37.037 5.50 0.00 0.00 2.17
321 322 9.132923 TCCGTGAAGAGTATACATCTAGAAATT 57.867 33.333 5.50 0.00 0.00 1.82
322 323 9.751542 CCGTGAAGAGTATACATCTAGAAATTT 57.248 33.333 5.50 0.00 0.00 1.82
345 346 8.934023 TTTTAGGACAAATTATGGAGTTGAGT 57.066 30.769 0.00 0.00 36.83 3.41
349 350 8.934023 AGGACAAATTATGGAGTTGAGTAAAA 57.066 30.769 0.00 0.00 36.83 1.52
350 351 9.362151 AGGACAAATTATGGAGTTGAGTAAAAA 57.638 29.630 0.00 0.00 36.83 1.94
371 372 1.798283 TGCATTGGAAATGTGCAAGC 58.202 45.000 0.00 0.87 44.99 4.01
372 373 1.081094 GCATTGGAAATGTGCAAGCC 58.919 50.000 0.00 0.00 38.60 4.35
373 374 1.608542 GCATTGGAAATGTGCAAGCCA 60.609 47.619 0.00 0.00 38.60 4.75
374 375 2.070783 CATTGGAAATGTGCAAGCCAC 58.929 47.619 0.00 0.00 44.90 5.01
375 376 0.392336 TTGGAAATGTGCAAGCCACC 59.608 50.000 0.00 0.00 44.01 4.61
376 377 0.758310 TGGAAATGTGCAAGCCACCA 60.758 50.000 0.00 0.00 44.01 4.17
377 378 0.609662 GGAAATGTGCAAGCCACCAT 59.390 50.000 0.00 0.00 44.01 3.55
378 379 1.404583 GGAAATGTGCAAGCCACCATC 60.405 52.381 0.00 0.00 44.01 3.51
379 380 1.547372 GAAATGTGCAAGCCACCATCT 59.453 47.619 0.00 0.00 44.01 2.90
380 381 1.180029 AATGTGCAAGCCACCATCTC 58.820 50.000 0.00 0.00 44.01 2.75
381 382 0.330604 ATGTGCAAGCCACCATCTCT 59.669 50.000 0.00 0.00 44.01 3.10
382 383 0.321919 TGTGCAAGCCACCATCTCTC 60.322 55.000 0.00 0.00 44.01 3.20
383 384 0.035630 GTGCAAGCCACCATCTCTCT 60.036 55.000 0.00 0.00 38.55 3.10
384 385 0.251354 TGCAAGCCACCATCTCTCTC 59.749 55.000 0.00 0.00 0.00 3.20
385 386 0.463474 GCAAGCCACCATCTCTCTCC 60.463 60.000 0.00 0.00 0.00 3.71
386 387 1.202330 CAAGCCACCATCTCTCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
387 388 1.138661 CAAGCCACCATCTCTCTCCTC 59.861 57.143 0.00 0.00 0.00 3.71
388 389 0.636101 AGCCACCATCTCTCTCCTCT 59.364 55.000 0.00 0.00 0.00 3.69
389 390 1.008206 AGCCACCATCTCTCTCCTCTT 59.992 52.381 0.00 0.00 0.00 2.85
390 391 1.836802 GCCACCATCTCTCTCCTCTTT 59.163 52.381 0.00 0.00 0.00 2.52
391 392 3.034635 GCCACCATCTCTCTCCTCTTTA 58.965 50.000 0.00 0.00 0.00 1.85
392 393 3.452627 GCCACCATCTCTCTCCTCTTTAA 59.547 47.826 0.00 0.00 0.00 1.52
393 394 4.102367 GCCACCATCTCTCTCCTCTTTAAT 59.898 45.833 0.00 0.00 0.00 1.40
394 395 5.397334 GCCACCATCTCTCTCCTCTTTAATT 60.397 44.000 0.00 0.00 0.00 1.40
395 396 6.183361 GCCACCATCTCTCTCCTCTTTAATTA 60.183 42.308 0.00 0.00 0.00 1.40
396 397 7.213678 CCACCATCTCTCTCCTCTTTAATTAC 58.786 42.308 0.00 0.00 0.00 1.89
397 398 7.213678 CACCATCTCTCTCCTCTTTAATTACC 58.786 42.308 0.00 0.00 0.00 2.85
398 399 6.327887 ACCATCTCTCTCCTCTTTAATTACCC 59.672 42.308 0.00 0.00 0.00 3.69
399 400 6.327626 CCATCTCTCTCCTCTTTAATTACCCA 59.672 42.308 0.00 0.00 0.00 4.51
400 401 7.147479 CCATCTCTCTCCTCTTTAATTACCCAA 60.147 40.741 0.00 0.00 0.00 4.12
401 402 7.184067 TCTCTCTCCTCTTTAATTACCCAAC 57.816 40.000 0.00 0.00 0.00 3.77
402 403 6.156429 TCTCTCTCCTCTTTAATTACCCAACC 59.844 42.308 0.00 0.00 0.00 3.77
403 404 5.191124 TCTCTCCTCTTTAATTACCCAACCC 59.809 44.000 0.00 0.00 0.00 4.11
404 405 4.228895 TCTCCTCTTTAATTACCCAACCCC 59.771 45.833 0.00 0.00 0.00 4.95
405 406 3.270169 TCCTCTTTAATTACCCAACCCCC 59.730 47.826 0.00 0.00 0.00 5.40
406 407 3.011934 CCTCTTTAATTACCCAACCCCCA 59.988 47.826 0.00 0.00 0.00 4.96
407 408 4.511294 CCTCTTTAATTACCCAACCCCCAA 60.511 45.833 0.00 0.00 0.00 4.12
408 409 5.277250 CTCTTTAATTACCCAACCCCCAAT 58.723 41.667 0.00 0.00 0.00 3.16
409 410 5.026790 TCTTTAATTACCCAACCCCCAATG 58.973 41.667 0.00 0.00 0.00 2.82
410 411 4.694280 TTAATTACCCAACCCCCAATGA 57.306 40.909 0.00 0.00 0.00 2.57
411 412 2.846665 ATTACCCAACCCCCAATGAG 57.153 50.000 0.00 0.00 0.00 2.90
412 413 0.040499 TTACCCAACCCCCAATGAGC 59.960 55.000 0.00 0.00 0.00 4.26
413 414 0.849094 TACCCAACCCCCAATGAGCT 60.849 55.000 0.00 0.00 0.00 4.09
414 415 0.849094 ACCCAACCCCCAATGAGCTA 60.849 55.000 0.00 0.00 0.00 3.32
415 416 0.334676 CCCAACCCCCAATGAGCTAA 59.665 55.000 0.00 0.00 0.00 3.09
416 417 1.272985 CCCAACCCCCAATGAGCTAAA 60.273 52.381 0.00 0.00 0.00 1.85
417 418 2.626683 CCCAACCCCCAATGAGCTAAAT 60.627 50.000 0.00 0.00 0.00 1.40
418 419 2.431782 CCAACCCCCAATGAGCTAAATG 59.568 50.000 0.00 0.00 0.00 2.32
419 420 1.780503 ACCCCCAATGAGCTAAATGC 58.219 50.000 0.00 0.00 43.29 3.56
420 421 1.006998 ACCCCCAATGAGCTAAATGCA 59.993 47.619 0.00 0.00 45.94 3.96
421 422 2.322658 CCCCCAATGAGCTAAATGCAT 58.677 47.619 0.00 0.00 45.94 3.96
422 423 2.036733 CCCCCAATGAGCTAAATGCATG 59.963 50.000 0.00 0.00 45.94 4.06
423 424 2.696707 CCCCAATGAGCTAAATGCATGT 59.303 45.455 0.00 0.00 45.94 3.21
424 425 3.890756 CCCCAATGAGCTAAATGCATGTA 59.109 43.478 0.00 0.00 45.94 2.29
425 426 4.022589 CCCCAATGAGCTAAATGCATGTAG 60.023 45.833 18.25 18.25 45.94 2.74
426 427 4.823442 CCCAATGAGCTAAATGCATGTAGA 59.177 41.667 25.39 7.12 45.94 2.59
427 428 5.300034 CCCAATGAGCTAAATGCATGTAGAA 59.700 40.000 25.39 11.47 45.94 2.10
428 429 6.183360 CCCAATGAGCTAAATGCATGTAGAAA 60.183 38.462 25.39 11.15 45.94 2.52
429 430 7.431249 CCAATGAGCTAAATGCATGTAGAAAT 58.569 34.615 25.39 12.73 45.94 2.17
430 431 7.924412 CCAATGAGCTAAATGCATGTAGAAATT 59.076 33.333 25.39 16.99 45.94 1.82
431 432 9.955208 CAATGAGCTAAATGCATGTAGAAATTA 57.045 29.630 25.39 9.04 45.94 1.40
434 435 9.394767 TGAGCTAAATGCATGTAGAAATTAAGA 57.605 29.630 25.39 0.00 45.94 2.10
440 441 8.579850 AATGCATGTAGAAATTAAGAAGACCA 57.420 30.769 0.00 0.00 0.00 4.02
441 442 8.757982 ATGCATGTAGAAATTAAGAAGACCAT 57.242 30.769 0.00 0.00 0.00 3.55
442 443 7.988737 TGCATGTAGAAATTAAGAAGACCATG 58.011 34.615 0.00 0.00 0.00 3.66
443 444 7.611467 TGCATGTAGAAATTAAGAAGACCATGT 59.389 33.333 0.00 0.00 0.00 3.21
444 445 7.912250 GCATGTAGAAATTAAGAAGACCATGTG 59.088 37.037 0.00 0.00 0.00 3.21
445 446 8.950210 CATGTAGAAATTAAGAAGACCATGTGT 58.050 33.333 0.00 0.00 0.00 3.72
453 454 9.632638 AATTAAGAAGACCATGTGTATATTGCT 57.367 29.630 0.00 0.00 0.00 3.91
457 458 8.613060 AGAAGACCATGTGTATATTGCTATTG 57.387 34.615 0.00 0.00 0.00 1.90
458 459 7.663081 AGAAGACCATGTGTATATTGCTATTGG 59.337 37.037 0.00 0.00 0.00 3.16
459 460 6.841601 AGACCATGTGTATATTGCTATTGGT 58.158 36.000 0.00 0.00 0.00 3.67
460 461 6.936900 AGACCATGTGTATATTGCTATTGGTC 59.063 38.462 14.33 14.33 40.63 4.02
461 462 6.841601 ACCATGTGTATATTGCTATTGGTCT 58.158 36.000 0.00 0.00 0.00 3.85
462 463 7.290061 ACCATGTGTATATTGCTATTGGTCTT 58.710 34.615 0.00 0.00 0.00 3.01
463 464 7.229306 ACCATGTGTATATTGCTATTGGTCTTG 59.771 37.037 0.00 0.00 0.00 3.02
464 465 7.445096 CCATGTGTATATTGCTATTGGTCTTGA 59.555 37.037 0.00 0.00 0.00 3.02
465 466 9.006839 CATGTGTATATTGCTATTGGTCTTGAT 57.993 33.333 0.00 0.00 0.00 2.57
466 467 8.978874 TGTGTATATTGCTATTGGTCTTGATT 57.021 30.769 0.00 0.00 0.00 2.57
469 470 9.502091 TGTATATTGCTATTGGTCTTGATTACC 57.498 33.333 0.00 0.00 37.53 2.85
470 471 7.672983 ATATTGCTATTGGTCTTGATTACCG 57.327 36.000 0.00 0.00 40.08 4.02
471 472 4.481368 TGCTATTGGTCTTGATTACCGT 57.519 40.909 0.00 0.00 40.08 4.83
472 473 4.188462 TGCTATTGGTCTTGATTACCGTG 58.812 43.478 0.00 0.00 40.08 4.94
473 474 4.189231 GCTATTGGTCTTGATTACCGTGT 58.811 43.478 0.00 0.00 40.08 4.49
474 475 4.034048 GCTATTGGTCTTGATTACCGTGTG 59.966 45.833 0.00 0.00 40.08 3.82
475 476 3.755112 TTGGTCTTGATTACCGTGTGA 57.245 42.857 0.00 0.00 40.08 3.58
476 477 3.973206 TGGTCTTGATTACCGTGTGAT 57.027 42.857 0.00 0.00 40.08 3.06
477 478 3.595173 TGGTCTTGATTACCGTGTGATG 58.405 45.455 0.00 0.00 40.08 3.07
478 479 3.259625 TGGTCTTGATTACCGTGTGATGA 59.740 43.478 0.00 0.00 40.08 2.92
479 480 3.865745 GGTCTTGATTACCGTGTGATGAG 59.134 47.826 0.00 0.00 0.00 2.90
480 481 4.381612 GGTCTTGATTACCGTGTGATGAGA 60.382 45.833 0.00 0.00 0.00 3.27
481 482 4.800993 GTCTTGATTACCGTGTGATGAGAG 59.199 45.833 0.00 0.00 0.00 3.20
482 483 4.705023 TCTTGATTACCGTGTGATGAGAGA 59.295 41.667 0.00 0.00 0.00 3.10
483 484 4.639135 TGATTACCGTGTGATGAGAGAG 57.361 45.455 0.00 0.00 0.00 3.20
484 485 4.270008 TGATTACCGTGTGATGAGAGAGA 58.730 43.478 0.00 0.00 0.00 3.10
485 486 4.705023 TGATTACCGTGTGATGAGAGAGAA 59.295 41.667 0.00 0.00 0.00 2.87
486 487 4.703645 TTACCGTGTGATGAGAGAGAAG 57.296 45.455 0.00 0.00 0.00 2.85
487 488 2.520069 ACCGTGTGATGAGAGAGAAGT 58.480 47.619 0.00 0.00 0.00 3.01
488 489 3.687125 ACCGTGTGATGAGAGAGAAGTA 58.313 45.455 0.00 0.00 0.00 2.24
489 490 4.274147 ACCGTGTGATGAGAGAGAAGTAT 58.726 43.478 0.00 0.00 0.00 2.12
490 491 4.707448 ACCGTGTGATGAGAGAGAAGTATT 59.293 41.667 0.00 0.00 0.00 1.89
491 492 5.186021 ACCGTGTGATGAGAGAGAAGTATTT 59.814 40.000 0.00 0.00 0.00 1.40
492 493 6.102663 CCGTGTGATGAGAGAGAAGTATTTT 58.897 40.000 0.00 0.00 0.00 1.82
493 494 6.591834 CCGTGTGATGAGAGAGAAGTATTTTT 59.408 38.462 0.00 0.00 0.00 1.94
530 531 8.621532 AAGTGCATTGAAAAGATAGAAGTACA 57.378 30.769 0.00 0.00 0.00 2.90
531 532 8.798859 AGTGCATTGAAAAGATAGAAGTACAT 57.201 30.769 0.00 0.00 0.00 2.29
532 533 9.236006 AGTGCATTGAAAAGATAGAAGTACATT 57.764 29.630 0.00 0.00 0.00 2.71
533 534 9.846248 GTGCATTGAAAAGATAGAAGTACATTT 57.154 29.630 0.00 0.00 0.00 2.32
563 564 9.290988 TGGACAAATTTTAAAGCTAGATGTACA 57.709 29.630 0.00 0.00 0.00 2.90
564 565 9.556030 GGACAAATTTTAAAGCTAGATGTACAC 57.444 33.333 0.00 0.00 0.00 2.90
570 571 9.944376 ATTTTAAAGCTAGATGTACACTCTTCA 57.056 29.630 0.00 0.00 0.00 3.02
571 572 9.944376 TTTTAAAGCTAGATGTACACTCTTCAT 57.056 29.630 0.00 0.00 0.00 2.57
572 573 9.587772 TTTAAAGCTAGATGTACACTCTTCATC 57.412 33.333 0.00 0.00 38.43 2.92
573 574 5.431420 AGCTAGATGTACACTCTTCATCG 57.569 43.478 0.00 0.00 41.63 3.84
574 575 4.277174 AGCTAGATGTACACTCTTCATCGG 59.723 45.833 0.00 0.00 41.63 4.18
575 576 4.276183 GCTAGATGTACACTCTTCATCGGA 59.724 45.833 0.00 0.00 41.63 4.55
576 577 4.640789 AGATGTACACTCTTCATCGGAC 57.359 45.455 0.00 0.00 41.63 4.79
577 578 2.913777 TGTACACTCTTCATCGGACG 57.086 50.000 0.00 0.00 0.00 4.79
578 579 1.471287 TGTACACTCTTCATCGGACGG 59.529 52.381 0.00 0.00 0.00 4.79
579 580 1.741706 GTACACTCTTCATCGGACGGA 59.258 52.381 0.00 0.00 0.00 4.69
580 581 0.811915 ACACTCTTCATCGGACGGAG 59.188 55.000 0.00 0.00 32.57 4.63
581 582 0.101399 CACTCTTCATCGGACGGAGG 59.899 60.000 0.00 0.00 31.35 4.30
582 583 0.034380 ACTCTTCATCGGACGGAGGA 60.034 55.000 0.00 0.00 32.76 3.71
583 584 1.103803 CTCTTCATCGGACGGAGGAA 58.896 55.000 9.37 9.37 42.69 3.36
660 661 3.265791 GCCATGAAGGATAAGATAGCCG 58.734 50.000 0.00 0.00 39.78 5.52
662 663 4.804261 GCCATGAAGGATAAGATAGCCGTT 60.804 45.833 0.00 0.00 39.78 4.44
777 2995 5.801531 TGGTCAATGTCTAGTACACTGTT 57.198 39.130 0.00 0.00 42.09 3.16
837 3059 5.489278 AGGATTATAAACCCTCCATCTAGCC 59.511 44.000 8.09 0.00 0.00 3.93
889 3112 0.178987 TCCTTTTAAGTTGCGGGGCA 60.179 50.000 0.00 0.00 36.47 5.36
1262 3526 2.202324 GACAGCGAGGACGACGAC 60.202 66.667 0.00 0.00 42.66 4.34
1275 3545 1.154282 GACGACGACGACATGCTCA 60.154 57.895 15.32 0.00 42.66 4.26
1362 3638 4.400884 AGGTCATGAGTAACAGCAGAGTAG 59.599 45.833 0.00 0.00 0.00 2.57
1363 3639 4.158764 GGTCATGAGTAACAGCAGAGTAGT 59.841 45.833 0.00 0.00 0.00 2.73
1372 3650 8.160521 AGTAACAGCAGAGTAGTATATGTCTG 57.839 38.462 0.00 0.00 37.49 3.51
1443 3724 4.803426 GGAGTCGAGGTGCAGCGG 62.803 72.222 10.78 6.96 0.00 5.52
1568 3867 2.042435 AGGAGAAGGGAGAGGCGG 60.042 66.667 0.00 0.00 0.00 6.13
1569 3868 2.042843 GGAGAAGGGAGAGGCGGA 60.043 66.667 0.00 0.00 0.00 5.54
1801 4100 1.815421 CGACTCCTGGAAATGGCGG 60.815 63.158 1.93 0.00 0.00 6.13
1816 4115 4.749310 CGGAAGCAGAGCAGCGGT 62.749 66.667 0.00 0.00 40.15 5.68
1977 4285 5.514169 TGGGGTATTTTTCATGTGCTCATA 58.486 37.500 0.04 0.00 32.47 2.15
2022 4333 1.493854 ATACCGGGGAGCACACCAAA 61.494 55.000 6.32 0.00 40.12 3.28
2083 4394 3.941483 CGAAGTTGGCAGATTATTCAGGT 59.059 43.478 0.00 0.00 0.00 4.00
2084 4395 5.116180 CGAAGTTGGCAGATTATTCAGGTA 58.884 41.667 0.00 0.00 0.00 3.08
2101 4412 1.802365 GGTATCTTTGGCGTCGTTGTT 59.198 47.619 0.00 0.00 0.00 2.83
2112 4423 1.649171 CGTCGTTGTTGATTCGAGAGG 59.351 52.381 0.00 0.00 34.33 3.69
2141 4456 7.338196 TGTTGTGATTTTGTTGTTCTTCTCCTA 59.662 33.333 0.00 0.00 0.00 2.94
2201 4521 7.065563 ACTCAGATGCATGTACTTTCTGATTTC 59.934 37.037 13.73 0.00 41.27 2.17
2229 4549 7.549842 AGAGCTGCATCAATCATGATATACTTC 59.450 37.037 9.04 0.00 44.53 3.01
2230 4550 7.395617 AGCTGCATCAATCATGATATACTTCT 58.604 34.615 9.04 0.00 44.53 2.85
2231 4551 7.883833 AGCTGCATCAATCATGATATACTTCTT 59.116 33.333 9.04 0.00 44.53 2.52
2232 4552 8.176365 GCTGCATCAATCATGATATACTTCTTC 58.824 37.037 9.04 0.00 44.53 2.87
2239 4559 9.334947 CAATCATGATATACTTCTTCCACTGTT 57.665 33.333 9.04 0.00 0.00 3.16
2242 4562 8.708378 TCATGATATACTTCTTCCACTGTTCAT 58.292 33.333 0.00 0.00 0.00 2.57
2308 6042 9.388346 GTCTATATACGAACTGAAATGAGTGAG 57.612 37.037 0.00 0.00 0.00 3.51
2310 6044 3.111853 ACGAACTGAAATGAGTGAGCA 57.888 42.857 0.00 0.00 0.00 4.26
2323 6057 7.698836 AATGAGTGAGCAAACACATTAAAAC 57.301 32.000 11.04 0.00 38.88 2.43
2324 6058 5.270083 TGAGTGAGCAAACACATTAAAACG 58.730 37.500 10.34 0.00 42.45 3.60
2325 6059 5.163703 TGAGTGAGCAAACACATTAAAACGT 60.164 36.000 10.34 0.00 42.45 3.99
2326 6060 5.034152 AGTGAGCAAACACATTAAAACGTG 58.966 37.500 10.34 0.00 42.45 4.49
2327 6061 3.794028 TGAGCAAACACATTAAAACGTGC 59.206 39.130 0.00 0.00 36.57 5.34
2328 6062 3.120041 AGCAAACACATTAAAACGTGCC 58.880 40.909 0.00 0.00 36.57 5.01
2329 6063 2.219903 GCAAACACATTAAAACGTGCCC 59.780 45.455 0.00 0.00 36.57 5.36
2330 6064 2.409152 AACACATTAAAACGTGCCCG 57.591 45.000 0.00 0.00 36.57 6.13
2379 6126 4.267349 TGTAAACAGAGGGAGTACTTGC 57.733 45.455 0.00 0.00 0.00 4.01
2385 6132 3.764972 ACAGAGGGAGTACTTGCTAGTTC 59.235 47.826 6.03 0.98 35.78 3.01
2400 6147 3.007614 GCTAGTTCAGTTGTGGTCCCTAA 59.992 47.826 0.00 0.00 0.00 2.69
2530 6278 2.553079 TTTTGTTCCACTTGCACGAC 57.447 45.000 0.00 0.00 0.00 4.34
2569 6317 4.501559 CAGAATTTTGCAGCACCGAATATG 59.498 41.667 0.00 0.00 0.00 1.78
2577 6325 2.942376 CAGCACCGAATATGTAAAGGCA 59.058 45.455 0.00 0.00 0.00 4.75
2583 6395 5.989168 CACCGAATATGTAAAGGCATGACTA 59.011 40.000 0.00 0.00 0.00 2.59
2735 6558 0.679505 GCCTACGGCCATGATGTCTA 59.320 55.000 2.24 0.00 44.06 2.59
2738 6561 0.671796 TACGGCCATGATGTCTACGG 59.328 55.000 2.24 0.00 0.00 4.02
2791 6619 1.130613 GCGAATCGATACGGCATGC 59.869 57.895 9.90 9.90 0.00 4.06
2801 6629 1.252175 TACGGCATGCCACACAATTT 58.748 45.000 34.93 11.21 35.37 1.82
2802 6630 0.392336 ACGGCATGCCACACAATTTT 59.608 45.000 34.93 5.35 35.37 1.82
2804 6632 0.518195 GGCATGCCACACAATTTTGC 59.482 50.000 32.08 0.00 35.81 3.68
2805 6633 0.518195 GCATGCCACACAATTTTGCC 59.482 50.000 6.36 0.00 0.00 4.52
2872 7026 0.905357 AGCTTTGATGGCGGAGTACT 59.095 50.000 0.00 0.00 34.52 2.73
2888 7042 3.991121 GAGTACTTGAGGCTTCAGTCAAC 59.009 47.826 0.00 0.00 34.15 3.18
2906 7060 4.442073 GTCAACGAGTGCTTTAAACGAGTA 59.558 41.667 2.60 0.00 0.00 2.59
2912 7066 5.391310 CGAGTGCTTTAAACGAGTAGTAGGA 60.391 44.000 0.00 0.00 0.00 2.94
2913 7067 5.707931 AGTGCTTTAAACGAGTAGTAGGAC 58.292 41.667 0.00 0.00 0.00 3.85
2914 7068 5.242393 AGTGCTTTAAACGAGTAGTAGGACA 59.758 40.000 0.00 0.00 0.00 4.02
2915 7069 5.572126 GTGCTTTAAACGAGTAGTAGGACAG 59.428 44.000 0.00 0.00 0.00 3.51
2916 7070 5.242393 TGCTTTAAACGAGTAGTAGGACAGT 59.758 40.000 0.00 0.00 0.00 3.55
2917 7071 6.430925 TGCTTTAAACGAGTAGTAGGACAGTA 59.569 38.462 0.00 0.00 0.00 2.74
2957 7155 2.285977 CCCTGGTTACCAAAGATACGC 58.714 52.381 5.31 0.00 30.80 4.42
2999 7197 2.436417 TCCTTGAATTGGAGGCTTTCG 58.564 47.619 0.00 0.00 32.93 3.46
3013 7211 4.346129 AGGCTTTCGATAAAGTACGTACG 58.654 43.478 19.49 15.01 43.44 3.67
3014 7212 4.098416 GGCTTTCGATAAAGTACGTACGT 58.902 43.478 25.98 25.98 43.44 3.57
3015 7213 5.064707 AGGCTTTCGATAAAGTACGTACGTA 59.935 40.000 23.60 23.60 43.44 3.57
3060 7258 4.494484 CCTTACCAAGGCTTGCAAATTAC 58.506 43.478 21.77 0.00 42.78 1.89
3061 7259 4.220602 CCTTACCAAGGCTTGCAAATTACT 59.779 41.667 21.77 0.00 42.78 2.24
3062 7260 5.417580 CCTTACCAAGGCTTGCAAATTACTA 59.582 40.000 21.77 0.00 42.78 1.82
3063 7261 6.096846 CCTTACCAAGGCTTGCAAATTACTAT 59.903 38.462 21.77 0.00 42.78 2.12
3064 7262 7.284489 CCTTACCAAGGCTTGCAAATTACTATA 59.716 37.037 21.77 0.00 42.78 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.224670 ACGATACCCCAAACACACATGT 60.225 45.455 0.00 0.00 42.46 3.21
4 5 2.161410 CACGATACCCCAAACACACATG 59.839 50.000 0.00 0.00 0.00 3.21
6 7 1.141254 ACACGATACCCCAAACACACA 59.859 47.619 0.00 0.00 0.00 3.72
7 8 1.533731 CACACGATACCCCAAACACAC 59.466 52.381 0.00 0.00 0.00 3.82
8 9 1.141254 ACACACGATACCCCAAACACA 59.859 47.619 0.00 0.00 0.00 3.72
9 10 1.533731 CACACACGATACCCCAAACAC 59.466 52.381 0.00 0.00 0.00 3.32
10 11 1.885560 CACACACGATACCCCAAACA 58.114 50.000 0.00 0.00 0.00 2.83
11 12 0.519961 GCACACACGATACCCCAAAC 59.480 55.000 0.00 0.00 0.00 2.93
12 13 0.951525 CGCACACACGATACCCCAAA 60.952 55.000 0.00 0.00 34.06 3.28
13 14 1.374885 CGCACACACGATACCCCAA 60.375 57.895 0.00 0.00 34.06 4.12
14 15 2.263227 CGCACACACGATACCCCA 59.737 61.111 0.00 0.00 34.06 4.96
15 16 3.192922 GCGCACACACGATACCCC 61.193 66.667 0.30 0.00 34.06 4.95
16 17 3.192922 GGCGCACACACGATACCC 61.193 66.667 10.83 0.00 34.06 3.69
17 18 2.433491 TGGCGCACACACGATACC 60.433 61.111 10.83 0.00 34.06 2.73
31 32 1.792949 CGTCATAATCCGCTAAGTGGC 59.207 52.381 0.00 0.00 32.51 5.01
32 33 2.223971 ACCGTCATAATCCGCTAAGTGG 60.224 50.000 0.00 0.00 33.99 4.00
33 34 3.093717 ACCGTCATAATCCGCTAAGTG 57.906 47.619 0.00 0.00 0.00 3.16
34 35 3.814005 AACCGTCATAATCCGCTAAGT 57.186 42.857 0.00 0.00 0.00 2.24
35 36 4.569162 TGAAAACCGTCATAATCCGCTAAG 59.431 41.667 0.00 0.00 0.00 2.18
36 37 4.505808 TGAAAACCGTCATAATCCGCTAA 58.494 39.130 0.00 0.00 0.00 3.09
37 38 4.126208 TGAAAACCGTCATAATCCGCTA 57.874 40.909 0.00 0.00 0.00 4.26
38 39 2.980568 TGAAAACCGTCATAATCCGCT 58.019 42.857 0.00 0.00 0.00 5.52
39 40 3.617669 CATGAAAACCGTCATAATCCGC 58.382 45.455 0.00 0.00 36.04 5.54
40 41 3.617669 GCATGAAAACCGTCATAATCCG 58.382 45.455 0.00 0.00 36.04 4.18
41 42 3.548014 CCGCATGAAAACCGTCATAATCC 60.548 47.826 0.00 0.00 36.04 3.01
42 43 3.617669 CCGCATGAAAACCGTCATAATC 58.382 45.455 0.00 0.00 36.04 1.75
43 44 2.223479 GCCGCATGAAAACCGTCATAAT 60.223 45.455 0.00 0.00 36.04 1.28
44 45 1.131504 GCCGCATGAAAACCGTCATAA 59.868 47.619 0.00 0.00 36.04 1.90
45 46 0.730265 GCCGCATGAAAACCGTCATA 59.270 50.000 0.00 0.00 36.04 2.15
46 47 0.960364 AGCCGCATGAAAACCGTCAT 60.960 50.000 0.00 0.00 38.84 3.06
47 48 1.169661 AAGCCGCATGAAAACCGTCA 61.170 50.000 0.00 0.00 0.00 4.35
48 49 0.039527 AAAGCCGCATGAAAACCGTC 60.040 50.000 0.00 0.00 0.00 4.79
49 50 0.387565 AAAAGCCGCATGAAAACCGT 59.612 45.000 0.00 0.00 0.00 4.83
50 51 1.496934 AAAAAGCCGCATGAAAACCG 58.503 45.000 0.00 0.00 0.00 4.44
51 52 3.649073 ACTAAAAAGCCGCATGAAAACC 58.351 40.909 0.00 0.00 0.00 3.27
52 53 6.944557 ATTACTAAAAAGCCGCATGAAAAC 57.055 33.333 0.00 0.00 0.00 2.43
53 54 8.917655 GTTAATTACTAAAAAGCCGCATGAAAA 58.082 29.630 0.00 0.00 0.00 2.29
54 55 8.082852 TGTTAATTACTAAAAAGCCGCATGAAA 58.917 29.630 0.00 0.00 0.00 2.69
55 56 7.594714 TGTTAATTACTAAAAAGCCGCATGAA 58.405 30.769 0.00 0.00 0.00 2.57
56 57 7.147143 TGTTAATTACTAAAAAGCCGCATGA 57.853 32.000 0.00 0.00 0.00 3.07
57 58 7.753132 TCTTGTTAATTACTAAAAAGCCGCATG 59.247 33.333 0.00 0.00 35.51 4.06
58 59 7.822658 TCTTGTTAATTACTAAAAAGCCGCAT 58.177 30.769 0.00 0.00 35.51 4.73
59 60 7.204496 TCTTGTTAATTACTAAAAAGCCGCA 57.796 32.000 0.00 0.00 35.51 5.69
60 61 9.777575 TTATCTTGTTAATTACTAAAAAGCCGC 57.222 29.630 0.00 0.00 35.51 6.53
100 101 8.932791 GCAAAAGATTTGTCTCATTCATCAATT 58.067 29.630 4.90 0.00 0.00 2.32
101 102 7.548075 GGCAAAAGATTTGTCTCATTCATCAAT 59.452 33.333 4.90 0.00 0.00 2.57
102 103 6.869913 GGCAAAAGATTTGTCTCATTCATCAA 59.130 34.615 4.90 0.00 0.00 2.57
103 104 6.209986 AGGCAAAAGATTTGTCTCATTCATCA 59.790 34.615 4.21 0.00 25.88 3.07
104 105 6.628185 AGGCAAAAGATTTGTCTCATTCATC 58.372 36.000 4.21 0.00 25.88 2.92
105 106 6.600882 AGGCAAAAGATTTGTCTCATTCAT 57.399 33.333 4.21 0.00 25.88 2.57
106 107 6.409524 AAGGCAAAAGATTTGTCTCATTCA 57.590 33.333 10.07 0.00 32.49 2.57
107 108 5.570589 CGAAGGCAAAAGATTTGTCTCATTC 59.429 40.000 10.07 4.47 32.49 2.67
108 109 5.010012 ACGAAGGCAAAAGATTTGTCTCATT 59.990 36.000 10.07 0.00 32.49 2.57
109 110 4.520492 ACGAAGGCAAAAGATTTGTCTCAT 59.480 37.500 10.07 0.00 32.49 2.90
110 111 3.882888 ACGAAGGCAAAAGATTTGTCTCA 59.117 39.130 10.07 0.00 32.49 3.27
111 112 4.489679 ACGAAGGCAAAAGATTTGTCTC 57.510 40.909 10.07 4.30 32.49 3.36
112 113 4.918810 AACGAAGGCAAAAGATTTGTCT 57.081 36.364 4.21 4.21 35.63 3.41
113 114 7.458038 TTTAAACGAAGGCAAAAGATTTGTC 57.542 32.000 0.00 0.00 0.00 3.18
114 115 7.835634 TTTTAAACGAAGGCAAAAGATTTGT 57.164 28.000 4.90 0.00 0.00 2.83
147 148 9.020731 CCAATTAAGAAACAAGGTAGTGGTAAT 57.979 33.333 0.00 0.00 0.00 1.89
148 149 8.000127 ACCAATTAAGAAACAAGGTAGTGGTAA 59.000 33.333 0.00 0.00 32.86 2.85
149 150 7.519927 ACCAATTAAGAAACAAGGTAGTGGTA 58.480 34.615 0.00 0.00 32.86 3.25
150 151 6.370453 ACCAATTAAGAAACAAGGTAGTGGT 58.630 36.000 0.00 0.00 0.00 4.16
151 152 6.488683 TGACCAATTAAGAAACAAGGTAGTGG 59.511 38.462 0.00 0.00 0.00 4.00
152 153 7.504924 TGACCAATTAAGAAACAAGGTAGTG 57.495 36.000 0.00 0.00 0.00 2.74
153 154 8.528044 TTTGACCAATTAAGAAACAAGGTAGT 57.472 30.769 0.00 0.00 0.00 2.73
154 155 8.082242 CCTTTGACCAATTAAGAAACAAGGTAG 58.918 37.037 0.00 0.00 0.00 3.18
155 156 7.470841 GCCTTTGACCAATTAAGAAACAAGGTA 60.471 37.037 0.00 0.00 0.00 3.08
156 157 6.685368 GCCTTTGACCAATTAAGAAACAAGGT 60.685 38.462 0.00 0.00 0.00 3.50
157 158 5.696270 GCCTTTGACCAATTAAGAAACAAGG 59.304 40.000 0.00 0.00 0.00 3.61
158 159 6.279882 TGCCTTTGACCAATTAAGAAACAAG 58.720 36.000 0.00 0.00 0.00 3.16
159 160 6.227298 TGCCTTTGACCAATTAAGAAACAA 57.773 33.333 0.00 0.00 0.00 2.83
160 161 5.860941 TGCCTTTGACCAATTAAGAAACA 57.139 34.783 0.00 0.00 0.00 2.83
161 162 6.280643 ACTTGCCTTTGACCAATTAAGAAAC 58.719 36.000 0.00 0.00 0.00 2.78
162 163 6.478512 ACTTGCCTTTGACCAATTAAGAAA 57.521 33.333 0.00 0.00 0.00 2.52
163 164 6.478512 AACTTGCCTTTGACCAATTAAGAA 57.521 33.333 0.00 0.00 0.00 2.52
164 165 6.323739 AGAAACTTGCCTTTGACCAATTAAGA 59.676 34.615 0.00 0.00 0.00 2.10
165 166 6.515832 AGAAACTTGCCTTTGACCAATTAAG 58.484 36.000 0.00 0.00 0.00 1.85
166 167 6.478512 AGAAACTTGCCTTTGACCAATTAA 57.521 33.333 0.00 0.00 0.00 1.40
167 168 7.232534 ACATAGAAACTTGCCTTTGACCAATTA 59.767 33.333 0.00 0.00 0.00 1.40
168 169 6.041979 ACATAGAAACTTGCCTTTGACCAATT 59.958 34.615 0.00 0.00 0.00 2.32
169 170 5.539955 ACATAGAAACTTGCCTTTGACCAAT 59.460 36.000 0.00 0.00 0.00 3.16
170 171 4.892934 ACATAGAAACTTGCCTTTGACCAA 59.107 37.500 0.00 0.00 0.00 3.67
171 172 4.469657 ACATAGAAACTTGCCTTTGACCA 58.530 39.130 0.00 0.00 0.00 4.02
172 173 5.938125 TCTACATAGAAACTTGCCTTTGACC 59.062 40.000 0.00 0.00 0.00 4.02
173 174 6.426937 TGTCTACATAGAAACTTGCCTTTGAC 59.573 38.462 0.00 0.00 33.47 3.18
174 175 6.426937 GTGTCTACATAGAAACTTGCCTTTGA 59.573 38.462 2.44 0.00 37.53 2.69
175 176 6.603095 GTGTCTACATAGAAACTTGCCTTTG 58.397 40.000 2.44 0.00 37.53 2.77
176 177 5.408604 CGTGTCTACATAGAAACTTGCCTTT 59.591 40.000 7.48 0.00 38.21 3.11
177 178 4.929808 CGTGTCTACATAGAAACTTGCCTT 59.070 41.667 7.48 0.00 38.21 4.35
178 179 4.021368 ACGTGTCTACATAGAAACTTGCCT 60.021 41.667 7.48 0.00 38.21 4.75
179 180 4.091509 CACGTGTCTACATAGAAACTTGCC 59.908 45.833 7.58 0.00 38.21 4.52
180 181 4.921515 TCACGTGTCTACATAGAAACTTGC 59.078 41.667 16.51 0.00 38.80 4.01
181 182 5.918576 TGTCACGTGTCTACATAGAAACTTG 59.081 40.000 16.51 8.70 39.72 3.16
182 183 6.080648 TGTCACGTGTCTACATAGAAACTT 57.919 37.500 16.51 0.00 38.21 2.66
183 184 5.700722 TGTCACGTGTCTACATAGAAACT 57.299 39.130 16.51 0.00 38.21 2.66
184 185 4.323868 GCTGTCACGTGTCTACATAGAAAC 59.676 45.833 16.51 1.96 37.23 2.78
185 186 4.022676 TGCTGTCACGTGTCTACATAGAAA 60.023 41.667 16.51 0.00 33.47 2.52
186 187 3.504520 TGCTGTCACGTGTCTACATAGAA 59.495 43.478 16.51 0.00 33.47 2.10
187 188 3.078837 TGCTGTCACGTGTCTACATAGA 58.921 45.455 16.51 0.00 0.00 1.98
188 189 3.487563 TGCTGTCACGTGTCTACATAG 57.512 47.619 16.51 4.53 0.00 2.23
189 190 3.486875 CGATGCTGTCACGTGTCTACATA 60.487 47.826 16.51 5.57 0.00 2.29
190 191 2.732282 CGATGCTGTCACGTGTCTACAT 60.732 50.000 16.51 16.34 0.00 2.29
191 192 1.401018 CGATGCTGTCACGTGTCTACA 60.401 52.381 16.51 11.77 0.00 2.74
192 193 1.260206 CGATGCTGTCACGTGTCTAC 58.740 55.000 16.51 7.21 0.00 2.59
193 194 0.170339 CCGATGCTGTCACGTGTCTA 59.830 55.000 16.51 2.26 0.00 2.59
194 195 1.080501 CCGATGCTGTCACGTGTCT 60.081 57.895 16.51 0.00 0.00 3.41
195 196 2.730672 GCCGATGCTGTCACGTGTC 61.731 63.158 16.51 10.98 33.53 3.67
196 197 2.738521 GCCGATGCTGTCACGTGT 60.739 61.111 16.51 0.00 33.53 4.49
206 207 3.357079 CCGCCCATAAGCCGATGC 61.357 66.667 0.00 0.00 37.95 3.91
207 208 3.357079 GCCGCCCATAAGCCGATG 61.357 66.667 0.00 0.00 0.00 3.84
208 209 4.988598 CGCCGCCCATAAGCCGAT 62.989 66.667 0.00 0.00 0.00 4.18
210 211 4.988598 ATCGCCGCCCATAAGCCG 62.989 66.667 0.00 0.00 0.00 5.52
211 212 3.050275 GATCGCCGCCCATAAGCC 61.050 66.667 0.00 0.00 0.00 4.35
212 213 2.029844 GAGATCGCCGCCCATAAGC 61.030 63.158 0.00 0.00 0.00 3.09
213 214 0.034059 AAGAGATCGCCGCCCATAAG 59.966 55.000 0.00 0.00 0.00 1.73
214 215 0.033504 GAAGAGATCGCCGCCCATAA 59.966 55.000 0.00 0.00 0.00 1.90
215 216 0.827925 AGAAGAGATCGCCGCCCATA 60.828 55.000 0.00 0.00 0.00 2.74
216 217 1.690219 AAGAAGAGATCGCCGCCCAT 61.690 55.000 0.00 0.00 0.00 4.00
217 218 1.040893 TAAGAAGAGATCGCCGCCCA 61.041 55.000 0.00 0.00 0.00 5.36
218 219 0.104304 TTAAGAAGAGATCGCCGCCC 59.896 55.000 0.00 0.00 0.00 6.13
219 220 1.935933 TTTAAGAAGAGATCGCCGCC 58.064 50.000 0.00 0.00 0.00 6.13
220 221 2.348966 GCATTTAAGAAGAGATCGCCGC 60.349 50.000 0.00 0.00 0.00 6.53
221 222 3.126831 AGCATTTAAGAAGAGATCGCCG 58.873 45.455 0.00 0.00 0.00 6.46
222 223 4.122776 TGAGCATTTAAGAAGAGATCGCC 58.877 43.478 0.00 0.00 0.00 5.54
223 224 5.388268 CGATGAGCATTTAAGAAGAGATCGC 60.388 44.000 0.00 0.00 0.00 4.58
224 225 5.689514 ACGATGAGCATTTAAGAAGAGATCG 59.310 40.000 0.00 0.00 36.08 3.69
225 226 7.223582 TCAACGATGAGCATTTAAGAAGAGATC 59.776 37.037 0.00 0.00 0.00 2.75
226 227 7.044181 TCAACGATGAGCATTTAAGAAGAGAT 58.956 34.615 0.00 0.00 0.00 2.75
227 228 6.398095 TCAACGATGAGCATTTAAGAAGAGA 58.602 36.000 0.00 0.00 0.00 3.10
228 229 6.653273 TCAACGATGAGCATTTAAGAAGAG 57.347 37.500 0.00 0.00 0.00 2.85
229 230 6.653273 CTCAACGATGAGCATTTAAGAAGA 57.347 37.500 9.94 0.00 46.11 2.87
242 243 1.296392 CCACTGCCCTCAACGATGA 59.704 57.895 0.00 0.00 0.00 2.92
243 244 0.606401 AACCACTGCCCTCAACGATG 60.606 55.000 0.00 0.00 0.00 3.84
244 245 0.110486 AAACCACTGCCCTCAACGAT 59.890 50.000 0.00 0.00 0.00 3.73
245 246 0.759959 TAAACCACTGCCCTCAACGA 59.240 50.000 0.00 0.00 0.00 3.85
246 247 0.872388 GTAAACCACTGCCCTCAACG 59.128 55.000 0.00 0.00 0.00 4.10
247 248 0.872388 CGTAAACCACTGCCCTCAAC 59.128 55.000 0.00 0.00 0.00 3.18
248 249 0.470766 ACGTAAACCACTGCCCTCAA 59.529 50.000 0.00 0.00 0.00 3.02
249 250 0.034337 GACGTAAACCACTGCCCTCA 59.966 55.000 0.00 0.00 0.00 3.86
250 251 0.320697 AGACGTAAACCACTGCCCTC 59.679 55.000 0.00 0.00 0.00 4.30
251 252 0.034896 CAGACGTAAACCACTGCCCT 59.965 55.000 0.00 0.00 0.00 5.19
252 253 0.034337 TCAGACGTAAACCACTGCCC 59.966 55.000 0.00 0.00 0.00 5.36
253 254 2.000447 GATCAGACGTAAACCACTGCC 59.000 52.381 0.00 0.00 0.00 4.85
254 255 2.924290 GAGATCAGACGTAAACCACTGC 59.076 50.000 0.00 0.00 0.00 4.40
255 256 3.172050 CGAGATCAGACGTAAACCACTG 58.828 50.000 0.00 0.00 0.00 3.66
256 257 2.818432 ACGAGATCAGACGTAAACCACT 59.182 45.455 10.01 0.00 40.92 4.00
257 258 2.915463 CACGAGATCAGACGTAAACCAC 59.085 50.000 11.04 0.00 40.76 4.16
258 259 2.670229 GCACGAGATCAGACGTAAACCA 60.670 50.000 11.04 0.00 40.76 3.67
259 260 1.918609 GCACGAGATCAGACGTAAACC 59.081 52.381 11.04 0.51 40.76 3.27
260 261 2.864968 AGCACGAGATCAGACGTAAAC 58.135 47.619 11.04 5.89 40.76 2.01
261 262 3.570926 AAGCACGAGATCAGACGTAAA 57.429 42.857 11.04 0.00 40.76 2.01
262 263 3.190744 AGAAAGCACGAGATCAGACGTAA 59.809 43.478 11.04 0.00 40.76 3.18
263 264 2.747989 AGAAAGCACGAGATCAGACGTA 59.252 45.455 11.04 0.00 40.76 3.57
264 265 1.542030 AGAAAGCACGAGATCAGACGT 59.458 47.619 0.00 0.91 43.50 4.34
265 266 2.270275 AGAAAGCACGAGATCAGACG 57.730 50.000 0.00 0.23 0.00 4.18
266 267 4.677584 ACATAGAAAGCACGAGATCAGAC 58.322 43.478 0.00 0.00 0.00 3.51
267 268 4.991153 ACATAGAAAGCACGAGATCAGA 57.009 40.909 0.00 0.00 0.00 3.27
268 269 5.826586 AGTACATAGAAAGCACGAGATCAG 58.173 41.667 0.00 0.00 0.00 2.90
269 270 5.221067 GGAGTACATAGAAAGCACGAGATCA 60.221 44.000 0.00 0.00 0.00 2.92
270 271 5.216648 GGAGTACATAGAAAGCACGAGATC 58.783 45.833 0.00 0.00 0.00 2.75
271 272 4.261238 CGGAGTACATAGAAAGCACGAGAT 60.261 45.833 0.00 0.00 0.00 2.75
272 273 3.064958 CGGAGTACATAGAAAGCACGAGA 59.935 47.826 0.00 0.00 0.00 4.04
273 274 3.181499 ACGGAGTACATAGAAAGCACGAG 60.181 47.826 0.00 0.00 41.94 4.18
274 275 2.751259 ACGGAGTACATAGAAAGCACGA 59.249 45.455 0.00 0.00 41.94 4.35
275 276 3.146618 ACGGAGTACATAGAAAGCACG 57.853 47.619 0.00 0.00 41.94 5.34
276 277 4.034652 CGGACGGAGTACATAGAAAGCAC 61.035 52.174 0.00 0.00 45.67 4.40
277 278 2.098607 CGGACGGAGTACATAGAAAGCA 59.901 50.000 0.00 0.00 45.67 3.91
278 279 2.098770 ACGGACGGAGTACATAGAAAGC 59.901 50.000 0.00 0.00 45.67 3.51
279 280 3.376234 TCACGGACGGAGTACATAGAAAG 59.624 47.826 0.00 0.00 45.67 2.62
280 281 3.346315 TCACGGACGGAGTACATAGAAA 58.654 45.455 0.00 0.00 45.67 2.52
281 282 2.989909 TCACGGACGGAGTACATAGAA 58.010 47.619 0.00 0.00 45.67 2.10
282 283 2.696989 TCACGGACGGAGTACATAGA 57.303 50.000 0.00 0.00 45.67 1.98
283 284 2.941064 TCTTCACGGACGGAGTACATAG 59.059 50.000 0.00 0.00 45.67 2.23
284 285 2.941064 CTCTTCACGGACGGAGTACATA 59.059 50.000 0.00 0.00 45.67 2.29
285 286 1.743958 CTCTTCACGGACGGAGTACAT 59.256 52.381 0.00 0.00 45.67 2.29
286 287 1.162698 CTCTTCACGGACGGAGTACA 58.837 55.000 0.00 0.00 45.67 2.90
290 291 2.941064 TGTATACTCTTCACGGACGGAG 59.059 50.000 4.17 0.00 0.00 4.63
291 292 2.989909 TGTATACTCTTCACGGACGGA 58.010 47.619 4.17 0.00 0.00 4.69
292 293 3.564644 AGATGTATACTCTTCACGGACGG 59.435 47.826 4.17 0.00 0.00 4.79
293 294 4.815040 AGATGTATACTCTTCACGGACG 57.185 45.455 4.17 0.00 0.00 4.79
294 295 7.493743 TTCTAGATGTATACTCTTCACGGAC 57.506 40.000 4.17 0.00 0.00 4.79
295 296 8.693120 ATTTCTAGATGTATACTCTTCACGGA 57.307 34.615 4.17 0.00 0.00 4.69
296 297 9.751542 AAATTTCTAGATGTATACTCTTCACGG 57.248 33.333 4.17 0.00 0.00 4.94
319 320 9.533831 ACTCAACTCCATAATTTGTCCTAAAAT 57.466 29.630 0.00 0.00 0.00 1.82
320 321 8.934023 ACTCAACTCCATAATTTGTCCTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
324 325 8.934023 TTTTACTCAACTCCATAATTTGTCCT 57.066 30.769 0.00 0.00 0.00 3.85
353 354 1.081094 GGCTTGCACATTTCCAATGC 58.919 50.000 0.00 0.00 39.88 3.56
354 355 2.070783 GTGGCTTGCACATTTCCAATG 58.929 47.619 0.00 0.00 0.00 2.82
355 356 1.002315 GGTGGCTTGCACATTTCCAAT 59.998 47.619 0.00 0.00 0.00 3.16
356 357 0.392336 GGTGGCTTGCACATTTCCAA 59.608 50.000 0.00 0.00 0.00 3.53
357 358 0.758310 TGGTGGCTTGCACATTTCCA 60.758 50.000 0.00 0.00 0.00 3.53
358 359 0.609662 ATGGTGGCTTGCACATTTCC 59.390 50.000 0.00 0.00 0.00 3.13
359 360 1.547372 AGATGGTGGCTTGCACATTTC 59.453 47.619 0.00 0.00 0.00 2.17
360 361 1.547372 GAGATGGTGGCTTGCACATTT 59.453 47.619 0.00 0.00 0.00 2.32
361 362 1.180029 GAGATGGTGGCTTGCACATT 58.820 50.000 0.00 0.00 0.00 2.71
362 363 0.330604 AGAGATGGTGGCTTGCACAT 59.669 50.000 0.00 0.00 0.00 3.21
363 364 0.321919 GAGAGATGGTGGCTTGCACA 60.322 55.000 0.00 0.00 0.00 4.57
364 365 0.035630 AGAGAGATGGTGGCTTGCAC 60.036 55.000 0.00 0.00 0.00 4.57
365 366 0.251354 GAGAGAGATGGTGGCTTGCA 59.749 55.000 0.00 0.00 0.00 4.08
366 367 0.463474 GGAGAGAGATGGTGGCTTGC 60.463 60.000 0.00 0.00 0.00 4.01
367 368 1.138661 GAGGAGAGAGATGGTGGCTTG 59.861 57.143 0.00 0.00 0.00 4.01
368 369 1.008206 AGAGGAGAGAGATGGTGGCTT 59.992 52.381 0.00 0.00 0.00 4.35
369 370 0.636101 AGAGGAGAGAGATGGTGGCT 59.364 55.000 0.00 0.00 0.00 4.75
370 371 1.494960 AAGAGGAGAGAGATGGTGGC 58.505 55.000 0.00 0.00 0.00 5.01
371 372 5.885449 ATTAAAGAGGAGAGAGATGGTGG 57.115 43.478 0.00 0.00 0.00 4.61
372 373 7.213678 GGTAATTAAAGAGGAGAGAGATGGTG 58.786 42.308 0.00 0.00 0.00 4.17
373 374 6.327887 GGGTAATTAAAGAGGAGAGAGATGGT 59.672 42.308 0.00 0.00 0.00 3.55
374 375 6.327626 TGGGTAATTAAAGAGGAGAGAGATGG 59.672 42.308 0.00 0.00 0.00 3.51
375 376 7.366847 TGGGTAATTAAAGAGGAGAGAGATG 57.633 40.000 0.00 0.00 0.00 2.90
376 377 7.147461 GGTTGGGTAATTAAAGAGGAGAGAGAT 60.147 40.741 0.00 0.00 0.00 2.75
377 378 6.156429 GGTTGGGTAATTAAAGAGGAGAGAGA 59.844 42.308 0.00 0.00 0.00 3.10
378 379 6.350103 GGTTGGGTAATTAAAGAGGAGAGAG 58.650 44.000 0.00 0.00 0.00 3.20
379 380 5.191124 GGGTTGGGTAATTAAAGAGGAGAGA 59.809 44.000 0.00 0.00 0.00 3.10
380 381 5.437946 GGGTTGGGTAATTAAAGAGGAGAG 58.562 45.833 0.00 0.00 0.00 3.20
381 382 4.228895 GGGGTTGGGTAATTAAAGAGGAGA 59.771 45.833 0.00 0.00 0.00 3.71
382 383 4.533815 GGGGTTGGGTAATTAAAGAGGAG 58.466 47.826 0.00 0.00 0.00 3.69
383 384 3.270169 GGGGGTTGGGTAATTAAAGAGGA 59.730 47.826 0.00 0.00 0.00 3.71
384 385 3.011934 TGGGGGTTGGGTAATTAAAGAGG 59.988 47.826 0.00 0.00 0.00 3.69
385 386 4.325084 TGGGGGTTGGGTAATTAAAGAG 57.675 45.455 0.00 0.00 0.00 2.85
386 387 4.761591 TTGGGGGTTGGGTAATTAAAGA 57.238 40.909 0.00 0.00 0.00 2.52
387 388 5.026790 TCATTGGGGGTTGGGTAATTAAAG 58.973 41.667 0.00 0.00 0.00 1.85
388 389 5.024803 TCATTGGGGGTTGGGTAATTAAA 57.975 39.130 0.00 0.00 0.00 1.52
389 390 4.615513 CTCATTGGGGGTTGGGTAATTAA 58.384 43.478 0.00 0.00 0.00 1.40
390 391 3.628769 GCTCATTGGGGGTTGGGTAATTA 60.629 47.826 0.00 0.00 0.00 1.40
391 392 2.892301 GCTCATTGGGGGTTGGGTAATT 60.892 50.000 0.00 0.00 0.00 1.40
392 393 1.342975 GCTCATTGGGGGTTGGGTAAT 60.343 52.381 0.00 0.00 0.00 1.89
393 394 0.040499 GCTCATTGGGGGTTGGGTAA 59.960 55.000 0.00 0.00 0.00 2.85
394 395 0.849094 AGCTCATTGGGGGTTGGGTA 60.849 55.000 0.00 0.00 0.00 3.69
395 396 0.849094 TAGCTCATTGGGGGTTGGGT 60.849 55.000 0.00 0.00 0.00 4.51
396 397 0.334676 TTAGCTCATTGGGGGTTGGG 59.665 55.000 0.00 0.00 0.00 4.12
397 398 2.230130 TTTAGCTCATTGGGGGTTGG 57.770 50.000 0.00 0.00 0.00 3.77
398 399 2.159057 GCATTTAGCTCATTGGGGGTTG 60.159 50.000 0.00 0.00 41.15 3.77
399 400 2.110578 GCATTTAGCTCATTGGGGGTT 58.889 47.619 0.00 0.00 41.15 4.11
400 401 1.006998 TGCATTTAGCTCATTGGGGGT 59.993 47.619 0.00 0.00 45.94 4.95
401 402 1.779221 TGCATTTAGCTCATTGGGGG 58.221 50.000 0.00 0.00 45.94 5.40
402 403 2.696707 ACATGCATTTAGCTCATTGGGG 59.303 45.455 0.00 0.00 45.94 4.96
403 404 4.823442 TCTACATGCATTTAGCTCATTGGG 59.177 41.667 13.96 0.00 45.94 4.12
404 405 6.381481 TTCTACATGCATTTAGCTCATTGG 57.619 37.500 13.96 0.00 45.94 3.16
405 406 8.867112 AATTTCTACATGCATTTAGCTCATTG 57.133 30.769 13.96 0.00 45.94 2.82
408 409 9.394767 TCTTAATTTCTACATGCATTTAGCTCA 57.605 29.630 13.96 2.37 45.94 4.26
414 415 9.023962 TGGTCTTCTTAATTTCTACATGCATTT 57.976 29.630 0.00 0.00 0.00 2.32
415 416 8.579850 TGGTCTTCTTAATTTCTACATGCATT 57.420 30.769 0.00 0.00 0.00 3.56
416 417 8.627403 CATGGTCTTCTTAATTTCTACATGCAT 58.373 33.333 0.00 0.00 0.00 3.96
417 418 7.611467 ACATGGTCTTCTTAATTTCTACATGCA 59.389 33.333 0.00 0.00 36.40 3.96
418 419 7.912250 CACATGGTCTTCTTAATTTCTACATGC 59.088 37.037 0.00 0.00 36.40 4.06
419 420 8.950210 ACACATGGTCTTCTTAATTTCTACATG 58.050 33.333 0.00 0.00 38.27 3.21
427 428 9.632638 AGCAATATACACATGGTCTTCTTAATT 57.367 29.630 0.00 0.00 0.00 1.40
431 432 9.060347 CAATAGCAATATACACATGGTCTTCTT 57.940 33.333 0.00 0.00 0.00 2.52
432 433 7.663081 CCAATAGCAATATACACATGGTCTTCT 59.337 37.037 0.00 0.00 0.00 2.85
433 434 7.445402 ACCAATAGCAATATACACATGGTCTTC 59.555 37.037 0.00 0.00 33.59 2.87
434 435 7.290061 ACCAATAGCAATATACACATGGTCTT 58.710 34.615 0.00 0.00 33.59 3.01
435 436 6.841601 ACCAATAGCAATATACACATGGTCT 58.158 36.000 0.00 0.00 33.59 3.85
436 437 7.133891 GACCAATAGCAATATACACATGGTC 57.866 40.000 5.47 5.47 45.04 4.02
437 438 6.841601 AGACCAATAGCAATATACACATGGT 58.158 36.000 0.00 0.00 41.10 3.55
438 439 7.445096 TCAAGACCAATAGCAATATACACATGG 59.555 37.037 0.00 0.00 0.00 3.66
439 440 8.382030 TCAAGACCAATAGCAATATACACATG 57.618 34.615 0.00 0.00 0.00 3.21
440 441 9.578576 AATCAAGACCAATAGCAATATACACAT 57.421 29.630 0.00 0.00 0.00 3.21
441 442 8.978874 AATCAAGACCAATAGCAATATACACA 57.021 30.769 0.00 0.00 0.00 3.72
443 444 9.502091 GGTAATCAAGACCAATAGCAATATACA 57.498 33.333 0.00 0.00 36.91 2.29
444 445 8.656849 CGGTAATCAAGACCAATAGCAATATAC 58.343 37.037 0.00 0.00 36.72 1.47
445 446 8.372459 ACGGTAATCAAGACCAATAGCAATATA 58.628 33.333 0.00 0.00 36.72 0.86
446 447 7.173218 CACGGTAATCAAGACCAATAGCAATAT 59.827 37.037 0.00 0.00 36.72 1.28
447 448 6.481976 CACGGTAATCAAGACCAATAGCAATA 59.518 38.462 0.00 0.00 36.72 1.90
448 449 5.296780 CACGGTAATCAAGACCAATAGCAAT 59.703 40.000 0.00 0.00 36.72 3.56
449 450 4.634004 CACGGTAATCAAGACCAATAGCAA 59.366 41.667 0.00 0.00 36.72 3.91
450 451 4.188462 CACGGTAATCAAGACCAATAGCA 58.812 43.478 0.00 0.00 36.72 3.49
451 452 4.034048 CACACGGTAATCAAGACCAATAGC 59.966 45.833 0.00 0.00 36.72 2.97
452 453 5.416083 TCACACGGTAATCAAGACCAATAG 58.584 41.667 0.00 0.00 36.72 1.73
453 454 5.408880 TCACACGGTAATCAAGACCAATA 57.591 39.130 0.00 0.00 36.72 1.90
454 455 4.280436 TCACACGGTAATCAAGACCAAT 57.720 40.909 0.00 0.00 36.72 3.16
455 456 3.755112 TCACACGGTAATCAAGACCAA 57.245 42.857 0.00 0.00 36.72 3.67
456 457 3.259625 TCATCACACGGTAATCAAGACCA 59.740 43.478 0.00 0.00 36.72 4.02
457 458 3.857052 TCATCACACGGTAATCAAGACC 58.143 45.455 0.00 0.00 0.00 3.85
458 459 4.744570 TCTCATCACACGGTAATCAAGAC 58.255 43.478 0.00 0.00 0.00 3.01
459 460 4.705023 TCTCTCATCACACGGTAATCAAGA 59.295 41.667 0.00 0.00 0.00 3.02
460 461 4.998788 TCTCTCATCACACGGTAATCAAG 58.001 43.478 0.00 0.00 0.00 3.02
461 462 4.705023 TCTCTCTCATCACACGGTAATCAA 59.295 41.667 0.00 0.00 0.00 2.57
462 463 4.270008 TCTCTCTCATCACACGGTAATCA 58.730 43.478 0.00 0.00 0.00 2.57
463 464 4.902443 TCTCTCTCATCACACGGTAATC 57.098 45.455 0.00 0.00 0.00 1.75
464 465 4.707448 ACTTCTCTCTCATCACACGGTAAT 59.293 41.667 0.00 0.00 0.00 1.89
465 466 4.079970 ACTTCTCTCTCATCACACGGTAA 58.920 43.478 0.00 0.00 0.00 2.85
466 467 3.687125 ACTTCTCTCTCATCACACGGTA 58.313 45.455 0.00 0.00 0.00 4.02
467 468 2.520069 ACTTCTCTCTCATCACACGGT 58.480 47.619 0.00 0.00 0.00 4.83
468 469 4.909696 ATACTTCTCTCTCATCACACGG 57.090 45.455 0.00 0.00 0.00 4.94
469 470 7.588143 AAAAATACTTCTCTCTCATCACACG 57.412 36.000 0.00 0.00 0.00 4.49
504 505 9.066892 TGTACTTCTATCTTTTCAATGCACTTT 57.933 29.630 0.00 0.00 0.00 2.66
505 506 8.621532 TGTACTTCTATCTTTTCAATGCACTT 57.378 30.769 0.00 0.00 0.00 3.16
506 507 8.798859 ATGTACTTCTATCTTTTCAATGCACT 57.201 30.769 0.00 0.00 0.00 4.40
507 508 9.846248 AAATGTACTTCTATCTTTTCAATGCAC 57.154 29.630 0.00 0.00 0.00 4.57
537 538 9.290988 TGTACATCTAGCTTTAAAATTTGTCCA 57.709 29.630 0.00 0.00 0.00 4.02
538 539 9.556030 GTGTACATCTAGCTTTAAAATTTGTCC 57.444 33.333 0.00 0.00 0.00 4.02
544 545 9.944376 TGAAGAGTGTACATCTAGCTTTAAAAT 57.056 29.630 0.00 0.00 0.00 1.82
545 546 9.944376 ATGAAGAGTGTACATCTAGCTTTAAAA 57.056 29.630 0.00 0.00 0.00 1.52
546 547 9.587772 GATGAAGAGTGTACATCTAGCTTTAAA 57.412 33.333 0.00 0.00 37.84 1.52
547 548 7.915923 CGATGAAGAGTGTACATCTAGCTTTAA 59.084 37.037 0.00 0.00 38.43 1.52
548 549 7.418408 CGATGAAGAGTGTACATCTAGCTTTA 58.582 38.462 0.00 0.00 38.43 1.85
549 550 6.269315 CGATGAAGAGTGTACATCTAGCTTT 58.731 40.000 0.00 0.00 38.43 3.51
550 551 5.221145 CCGATGAAGAGTGTACATCTAGCTT 60.221 44.000 0.00 0.00 38.43 3.74
551 552 4.277174 CCGATGAAGAGTGTACATCTAGCT 59.723 45.833 0.00 0.00 38.43 3.32
552 553 4.276183 TCCGATGAAGAGTGTACATCTAGC 59.724 45.833 0.00 1.05 38.43 3.42
553 554 5.559225 CGTCCGATGAAGAGTGTACATCTAG 60.559 48.000 0.00 0.00 38.43 2.43
554 555 4.272748 CGTCCGATGAAGAGTGTACATCTA 59.727 45.833 0.00 0.00 38.43 1.98
555 556 3.065510 CGTCCGATGAAGAGTGTACATCT 59.934 47.826 0.00 0.27 38.43 2.90
556 557 3.364062 CGTCCGATGAAGAGTGTACATC 58.636 50.000 0.00 0.00 37.59 3.06
557 558 2.099263 CCGTCCGATGAAGAGTGTACAT 59.901 50.000 0.00 0.00 0.00 2.29
558 559 1.471287 CCGTCCGATGAAGAGTGTACA 59.529 52.381 0.00 0.00 0.00 2.90
559 560 1.741706 TCCGTCCGATGAAGAGTGTAC 59.258 52.381 0.00 0.00 0.00 2.90
560 561 2.014857 CTCCGTCCGATGAAGAGTGTA 58.985 52.381 0.00 0.00 0.00 2.90
561 562 0.811915 CTCCGTCCGATGAAGAGTGT 59.188 55.000 0.00 0.00 0.00 3.55
562 563 0.101399 CCTCCGTCCGATGAAGAGTG 59.899 60.000 0.00 0.00 0.00 3.51
563 564 0.034380 TCCTCCGTCCGATGAAGAGT 60.034 55.000 0.00 0.00 0.00 3.24
564 565 1.066303 CTTCCTCCGTCCGATGAAGAG 59.934 57.143 0.00 0.00 42.68 2.85
565 566 1.103803 CTTCCTCCGTCCGATGAAGA 58.896 55.000 0.00 0.00 42.68 2.87
566 567 0.818296 ACTTCCTCCGTCCGATGAAG 59.182 55.000 0.00 0.00 44.48 3.02
567 568 2.022195 CTACTTCCTCCGTCCGATGAA 58.978 52.381 0.00 0.00 0.00 2.57
568 569 1.676746 CTACTTCCTCCGTCCGATGA 58.323 55.000 0.00 0.00 0.00 2.92
569 570 0.669077 CCTACTTCCTCCGTCCGATG 59.331 60.000 0.00 0.00 0.00 3.84
570 571 1.108132 GCCTACTTCCTCCGTCCGAT 61.108 60.000 0.00 0.00 0.00 4.18
571 572 1.751927 GCCTACTTCCTCCGTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
572 573 2.005960 CTGCCTACTTCCTCCGTCCG 62.006 65.000 0.00 0.00 0.00 4.79
573 574 1.677637 CCTGCCTACTTCCTCCGTCC 61.678 65.000 0.00 0.00 0.00 4.79
574 575 0.971447 ACCTGCCTACTTCCTCCGTC 60.971 60.000 0.00 0.00 0.00 4.79
575 576 0.544595 AACCTGCCTACTTCCTCCGT 60.545 55.000 0.00 0.00 0.00 4.69
576 577 0.613777 AAACCTGCCTACTTCCTCCG 59.386 55.000 0.00 0.00 0.00 4.63
577 578 1.340114 CCAAACCTGCCTACTTCCTCC 60.340 57.143 0.00 0.00 0.00 4.30
578 579 1.351350 ACCAAACCTGCCTACTTCCTC 59.649 52.381 0.00 0.00 0.00 3.71
579 580 1.351350 GACCAAACCTGCCTACTTCCT 59.649 52.381 0.00 0.00 0.00 3.36
580 581 1.613520 GGACCAAACCTGCCTACTTCC 60.614 57.143 0.00 0.00 0.00 3.46
581 582 1.613520 GGGACCAAACCTGCCTACTTC 60.614 57.143 0.00 0.00 0.00 3.01
582 583 0.404426 GGGACCAAACCTGCCTACTT 59.596 55.000 0.00 0.00 0.00 2.24
583 584 0.770557 TGGGACCAAACCTGCCTACT 60.771 55.000 0.00 0.00 0.00 2.57
777 2995 6.479001 GGCTAAGTAACAAATATTCGAGCTCA 59.521 38.462 15.40 0.00 0.00 4.26
857 3079 4.838986 ACTTAAAAGGAGTGTAGGCTCTCA 59.161 41.667 0.00 0.00 37.07 3.27
889 3112 2.030412 TGGACGCGCATGACAAGT 59.970 55.556 5.73 0.00 0.00 3.16
1051 3300 0.179020 TCTGGTGGAGTTGCTTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
1136 3391 3.065306 CAGTGGTTAGTGGCCGGA 58.935 61.111 5.05 0.00 0.00 5.14
1262 3526 1.001745 TCGTGTTGAGCATGTCGTCG 61.002 55.000 0.00 0.00 35.64 5.12
1275 3545 0.939419 GCCGTTACCTGTTTCGTGTT 59.061 50.000 0.00 0.00 0.00 3.32
1336 3612 3.578282 TCTGCTGTTACTCATGACCTCAA 59.422 43.478 0.00 0.00 0.00 3.02
1337 3613 3.165071 TCTGCTGTTACTCATGACCTCA 58.835 45.455 0.00 0.00 0.00 3.86
1362 3638 3.185188 CAGCATCAACGCCAGACATATAC 59.815 47.826 0.00 0.00 0.00 1.47
1363 3639 3.392882 CAGCATCAACGCCAGACATATA 58.607 45.455 0.00 0.00 0.00 0.86
1372 3650 3.058160 ACCTGCAGCATCAACGCC 61.058 61.111 8.66 0.00 0.00 5.68
1801 4100 3.184683 CGACCGCTGCTCTGCTTC 61.185 66.667 0.00 0.00 0.00 3.86
1977 4285 3.252458 GTGCAAGGTTGAACGAAATACCT 59.748 43.478 0.00 0.00 42.66 3.08
2022 4333 6.214819 ACCCTGTATATAGATTGGGCGTAATT 59.785 38.462 4.55 0.00 38.23 1.40
2066 4377 6.547141 CCAAAGATACCTGAATAATCTGCCAA 59.453 38.462 0.00 0.00 30.50 4.52
2073 4384 4.750098 CGACGCCAAAGATACCTGAATAAT 59.250 41.667 0.00 0.00 0.00 1.28
2076 4387 2.093658 ACGACGCCAAAGATACCTGAAT 60.094 45.455 0.00 0.00 0.00 2.57
2080 4391 1.001633 ACAACGACGCCAAAGATACCT 59.998 47.619 0.00 0.00 0.00 3.08
2083 4394 2.756829 TCAACAACGACGCCAAAGATA 58.243 42.857 0.00 0.00 0.00 1.98
2084 4395 1.588674 TCAACAACGACGCCAAAGAT 58.411 45.000 0.00 0.00 0.00 2.40
2101 4412 0.976641 ACAACAGCCCTCTCGAATCA 59.023 50.000 0.00 0.00 0.00 2.57
2112 4423 4.432712 AGAACAACAAAATCACAACAGCC 58.567 39.130 0.00 0.00 0.00 4.85
2141 4456 3.791887 CGATTACGCAGACGAATTCTTCT 59.208 43.478 8.58 8.58 43.93 2.85
2150 4465 4.391008 CTGGGATTACGATTACGCAGACG 61.391 52.174 0.00 0.00 42.88 4.18
2154 4469 4.098349 AGTTACTGGGATTACGATTACGCA 59.902 41.667 0.00 0.00 43.96 5.24
2201 4521 2.572290 TCATGATTGATGCAGCTCTGG 58.428 47.619 2.53 0.00 31.32 3.86
2308 6042 2.219903 GGGCACGTTTTAATGTGTTTGC 59.780 45.455 14.38 2.59 45.44 3.68
2310 6044 2.733517 CGGGCACGTTTTAATGTGTTT 58.266 42.857 0.00 0.00 45.44 2.83
2359 6103 4.538746 AGCAAGTACTCCCTCTGTTTAC 57.461 45.455 0.00 0.00 0.00 2.01
2379 6126 4.527038 TCTTAGGGACCACAACTGAACTAG 59.473 45.833 0.00 0.00 0.00 2.57
2385 6132 3.703001 ACATCTTAGGGACCACAACTG 57.297 47.619 0.00 0.00 0.00 3.16
2400 6147 4.449068 CGTTACTGCTGTTCTGAAACATCT 59.551 41.667 0.09 0.00 44.18 2.90
2419 6166 2.588620 AGGTGTTGCCATTTTCCGTTA 58.411 42.857 0.00 0.00 40.61 3.18
2535 6283 3.894427 TGCAAAATTCTGTCTTTAGCCCA 59.106 39.130 0.00 0.00 0.00 5.36
2537 6285 3.922850 GCTGCAAAATTCTGTCTTTAGCC 59.077 43.478 0.00 0.00 0.00 3.93
2569 6317 6.371548 TGTCATTTGACTAGTCATGCCTTTAC 59.628 38.462 25.68 14.89 44.99 2.01
2577 6325 5.578336 CGTGTCATGTCATTTGACTAGTCAT 59.422 40.000 25.68 9.80 44.99 3.06
2583 6395 3.067106 GGTCGTGTCATGTCATTTGACT 58.933 45.455 11.67 0.00 44.99 3.41
2738 6561 4.360563 CTGAGTATACCACGGATCACAAC 58.639 47.826 0.00 0.00 0.00 3.32
2751 6574 3.246226 CGCAGAATTGGTGCTGAGTATAC 59.754 47.826 7.58 0.00 38.88 1.47
2791 6619 0.031857 TCTGCGGCAAAATTGTGTGG 59.968 50.000 3.44 0.00 0.00 4.17
2801 6629 1.093972 CCACACATTATCTGCGGCAA 58.906 50.000 3.44 0.00 0.00 4.52
2802 6630 0.747644 CCCACACATTATCTGCGGCA 60.748 55.000 1.29 1.29 0.00 5.69
2804 6632 1.134401 AGTCCCACACATTATCTGCGG 60.134 52.381 0.00 0.00 0.00 5.69
2805 6633 1.935873 CAGTCCCACACATTATCTGCG 59.064 52.381 0.00 0.00 0.00 5.18
2864 7017 1.546476 ACTGAAGCCTCAAGTACTCCG 59.454 52.381 0.00 0.00 0.00 4.63
2872 7026 1.412710 ACTCGTTGACTGAAGCCTCAA 59.587 47.619 0.00 0.00 0.00 3.02
2888 7042 4.792189 CCTACTACTCGTTTAAAGCACTCG 59.208 45.833 0.00 0.00 0.00 4.18
2906 7060 4.737578 TCTCCAACTGTTACTGTCCTACT 58.262 43.478 0.00 0.00 0.00 2.57
2912 7066 4.202357 TGCTTGATCTCCAACTGTTACTGT 60.202 41.667 0.00 0.00 0.00 3.55
2913 7067 4.318332 TGCTTGATCTCCAACTGTTACTG 58.682 43.478 0.00 0.00 0.00 2.74
2914 7068 4.573900 CTGCTTGATCTCCAACTGTTACT 58.426 43.478 0.00 0.00 0.00 2.24
2915 7069 3.126000 GCTGCTTGATCTCCAACTGTTAC 59.874 47.826 0.00 0.00 0.00 2.50
2916 7070 3.338249 GCTGCTTGATCTCCAACTGTTA 58.662 45.455 0.00 0.00 0.00 2.41
2917 7071 2.157738 GCTGCTTGATCTCCAACTGTT 58.842 47.619 0.00 0.00 0.00 3.16
2957 7155 7.046652 AGGATCATCTCATGTTTGTTGACTAG 58.953 38.462 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.