Multiple sequence alignment - TraesCS5D01G245600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G245600 chr5D 100.000 3794 0 0 990 4783 353840999 353837206 0.000000e+00 7007.0
1 TraesCS5D01G245600 chr5D 100.000 662 0 0 1 662 353841988 353841327 0.000000e+00 1223.0
2 TraesCS5D01G245600 chr5D 91.525 118 5 4 3735 3851 353897145 353897258 1.780000e-34 158.0
3 TraesCS5D01G245600 chr5A 90.996 2921 154 43 990 3844 454774688 454777565 0.000000e+00 3836.0
4 TraesCS5D01G245600 chr5A 81.584 505 26 26 206 662 454773944 454774429 5.890000e-94 355.0
5 TraesCS5D01G245600 chr5B 89.803 2893 178 59 994 3844 418315728 418318545 0.000000e+00 3600.0
6 TraesCS5D01G245600 chr5B 88.670 1015 72 23 2843 3844 418330838 418331822 0.000000e+00 1197.0
7 TraesCS5D01G245600 chr5B 87.686 739 56 18 3111 3844 418321027 418321735 0.000000e+00 828.0
8 TraesCS5D01G245600 chr5B 87.686 739 56 18 3111 3844 418323159 418323867 0.000000e+00 828.0
9 TraesCS5D01G245600 chr5B 90.995 211 16 3 1 209 118947787 118947996 1.010000e-71 281.0
10 TraesCS5D01G245600 chr5B 86.081 273 14 12 208 460 418314993 418315261 6.100000e-69 272.0
11 TraesCS5D01G245600 chr5B 86.713 143 11 4 528 662 418315357 418315499 8.290000e-33 152.0
12 TraesCS5D01G245600 chr2D 96.463 933 19 3 3864 4783 563965799 563966730 0.000000e+00 1528.0
13 TraesCS5D01G245600 chr2D 95.788 926 33 3 3858 4783 469996931 469997850 0.000000e+00 1489.0
14 TraesCS5D01G245600 chr2D 95.177 933 33 2 3862 4783 525939863 525938932 0.000000e+00 1463.0
15 TraesCS5D01G245600 chr2D 94.307 931 40 3 3864 4783 470438233 470437305 0.000000e+00 1413.0
16 TraesCS5D01G245600 chr2D 93.262 935 29 4 3861 4783 15682019 15681107 0.000000e+00 1347.0
17 TraesCS5D01G245600 chr4D 96.241 931 25 2 3862 4783 81326968 81327897 0.000000e+00 1517.0
18 TraesCS5D01G245600 chr7D 95.927 933 24 3 3864 4783 630612483 630613414 0.000000e+00 1500.0
19 TraesCS5D01G245600 chr7D 95.704 931 21 3 3864 4783 69048030 69047108 0.000000e+00 1480.0
20 TraesCS5D01G245600 chr7A 93.615 924 51 5 3862 4783 603949472 603950389 0.000000e+00 1373.0
21 TraesCS5D01G245600 chr3D 96.108 848 19 3 3949 4783 200246171 200245325 0.000000e+00 1371.0
22 TraesCS5D01G245600 chr1A 93.812 905 49 4 3881 4783 491263066 491262167 0.000000e+00 1354.0
23 TraesCS5D01G245600 chr1A 92.216 334 15 1 3864 4186 79171923 79171590 3.370000e-126 462.0
24 TraesCS5D01G245600 chr6D 92.415 936 52 11 3862 4783 417885568 417884638 0.000000e+00 1317.0
25 TraesCS5D01G245600 chr6B 90.192 938 68 17 3864 4783 182449992 182450923 0.000000e+00 1201.0
26 TraesCS5D01G245600 chrUn 87.686 739 56 18 3111 3844 357740141 357739433 0.000000e+00 828.0
27 TraesCS5D01G245600 chr2B 91.469 211 14 4 1 210 777172319 777172112 2.180000e-73 287.0
28 TraesCS5D01G245600 chr2B 90.094 212 17 4 1 211 248136505 248136713 6.100000e-69 272.0
29 TraesCS5D01G245600 chr1B 91.038 212 13 5 1 210 33936104 33936311 1.010000e-71 281.0
30 TraesCS5D01G245600 chr3B 90.000 210 16 5 1 208 553569732 553569938 2.840000e-67 267.0
31 TraesCS5D01G245600 chr4A 86.321 212 14 4 1 211 656499916 656500113 2.900000e-52 217.0
32 TraesCS5D01G245600 chr4A 97.368 38 0 1 626 662 56787088 56787125 4.000000e-06 63.9
33 TraesCS5D01G245600 chr2A 96.117 103 2 2 104 204 698124964 698124862 2.960000e-37 167.0
34 TraesCS5D01G245600 chr2A 97.619 42 1 0 43 84 698125008 698124967 6.640000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G245600 chr5D 353837206 353841988 4782 True 4115.0 7007 100.0000 1 4783 2 chr5D.!!$R1 4782
1 TraesCS5D01G245600 chr5A 454773944 454777565 3621 False 2095.5 3836 86.2900 206 3844 2 chr5A.!!$F1 3638
2 TraesCS5D01G245600 chr5B 418330838 418331822 984 False 1197.0 1197 88.6700 2843 3844 1 chr5B.!!$F2 1001
3 TraesCS5D01G245600 chr5B 418314993 418323867 8874 False 1136.0 3600 87.5938 208 3844 5 chr5B.!!$F3 3636
4 TraesCS5D01G245600 chr2D 563965799 563966730 931 False 1528.0 1528 96.4630 3864 4783 1 chr2D.!!$F2 919
5 TraesCS5D01G245600 chr2D 469996931 469997850 919 False 1489.0 1489 95.7880 3858 4783 1 chr2D.!!$F1 925
6 TraesCS5D01G245600 chr2D 525938932 525939863 931 True 1463.0 1463 95.1770 3862 4783 1 chr2D.!!$R3 921
7 TraesCS5D01G245600 chr2D 470437305 470438233 928 True 1413.0 1413 94.3070 3864 4783 1 chr2D.!!$R2 919
8 TraesCS5D01G245600 chr2D 15681107 15682019 912 True 1347.0 1347 93.2620 3861 4783 1 chr2D.!!$R1 922
9 TraesCS5D01G245600 chr4D 81326968 81327897 929 False 1517.0 1517 96.2410 3862 4783 1 chr4D.!!$F1 921
10 TraesCS5D01G245600 chr7D 630612483 630613414 931 False 1500.0 1500 95.9270 3864 4783 1 chr7D.!!$F1 919
11 TraesCS5D01G245600 chr7D 69047108 69048030 922 True 1480.0 1480 95.7040 3864 4783 1 chr7D.!!$R1 919
12 TraesCS5D01G245600 chr7A 603949472 603950389 917 False 1373.0 1373 93.6150 3862 4783 1 chr7A.!!$F1 921
13 TraesCS5D01G245600 chr3D 200245325 200246171 846 True 1371.0 1371 96.1080 3949 4783 1 chr3D.!!$R1 834
14 TraesCS5D01G245600 chr1A 491262167 491263066 899 True 1354.0 1354 93.8120 3881 4783 1 chr1A.!!$R2 902
15 TraesCS5D01G245600 chr6D 417884638 417885568 930 True 1317.0 1317 92.4150 3862 4783 1 chr6D.!!$R1 921
16 TraesCS5D01G245600 chr6B 182449992 182450923 931 False 1201.0 1201 90.1920 3864 4783 1 chr6B.!!$F1 919
17 TraesCS5D01G245600 chrUn 357739433 357740141 708 True 828.0 828 87.6860 3111 3844 1 chrUn.!!$R1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 469 0.031585 TCACTCGAGGTTCGTTGGTG 59.968 55.0 18.41 3.26 41.35 4.17 F
1159 1270 0.107993 TGGATTCTTGCTCGAGCCTG 60.108 55.0 33.23 24.49 41.18 4.85 F
2434 2567 0.253327 GCCCCTTTCCTCACGAGAAT 59.747 55.0 0.00 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1929 0.235926 GCAGCGGAGAACAGAAACAC 59.764 55.000 0.00 0.0 0.00 3.32 R
2462 2598 0.039256 GCCGATCACTGCAGCAAAAA 60.039 50.000 15.27 0.0 0.00 1.94 R
4211 9748 1.077787 GGGCATGGAATGGACGACA 60.078 57.895 0.00 0.0 46.86 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.354208 AGTCTCTTATGGAGGAAAGGGA 57.646 45.455 0.00 0.00 42.10 4.20
22 23 4.294347 AGTCTCTTATGGAGGAAAGGGAG 58.706 47.826 0.00 0.00 42.10 4.30
23 24 4.034410 GTCTCTTATGGAGGAAAGGGAGT 58.966 47.826 0.00 0.00 42.10 3.85
24 25 4.471747 GTCTCTTATGGAGGAAAGGGAGTT 59.528 45.833 0.00 0.00 42.10 3.01
25 26 4.717280 TCTCTTATGGAGGAAAGGGAGTTC 59.283 45.833 0.00 0.00 42.10 3.01
26 27 3.451178 TCTTATGGAGGAAAGGGAGTTCG 59.549 47.826 0.00 0.00 0.00 3.95
27 28 1.657804 ATGGAGGAAAGGGAGTTCGT 58.342 50.000 0.00 0.00 0.00 3.85
28 29 1.430992 TGGAGGAAAGGGAGTTCGTT 58.569 50.000 0.00 0.00 0.00 3.85
29 30 1.346722 TGGAGGAAAGGGAGTTCGTTC 59.653 52.381 0.00 0.00 0.00 3.95
30 31 1.338864 GGAGGAAAGGGAGTTCGTTCC 60.339 57.143 0.00 0.00 42.80 3.62
31 32 0.320697 AGGAAAGGGAGTTCGTTCCG 59.679 55.000 0.00 0.00 45.58 4.30
32 33 0.319405 GGAAAGGGAGTTCGTTCCGA 59.681 55.000 0.00 0.00 38.17 4.55
33 34 1.270465 GGAAAGGGAGTTCGTTCCGAA 60.270 52.381 0.00 0.00 43.75 4.30
65 66 9.796180 TTTACTAGAAGTTAAAATAGGGTTGCA 57.204 29.630 0.00 0.00 0.00 4.08
66 67 7.923414 ACTAGAAGTTAAAATAGGGTTGCAG 57.077 36.000 0.00 0.00 0.00 4.41
67 68 7.686434 ACTAGAAGTTAAAATAGGGTTGCAGA 58.314 34.615 0.00 0.00 0.00 4.26
68 69 8.329502 ACTAGAAGTTAAAATAGGGTTGCAGAT 58.670 33.333 0.00 0.00 0.00 2.90
69 70 9.178758 CTAGAAGTTAAAATAGGGTTGCAGATT 57.821 33.333 0.00 0.00 0.00 2.40
70 71 7.830739 AGAAGTTAAAATAGGGTTGCAGATTG 58.169 34.615 0.00 0.00 0.00 2.67
71 72 7.451566 AGAAGTTAAAATAGGGTTGCAGATTGT 59.548 33.333 0.00 0.00 0.00 2.71
72 73 7.539034 AGTTAAAATAGGGTTGCAGATTGTT 57.461 32.000 0.00 0.00 0.00 2.83
73 74 7.962441 AGTTAAAATAGGGTTGCAGATTGTTT 58.038 30.769 0.00 0.00 0.00 2.83
74 75 7.872483 AGTTAAAATAGGGTTGCAGATTGTTTG 59.128 33.333 0.00 0.00 0.00 2.93
75 76 4.806640 AATAGGGTTGCAGATTGTTTGG 57.193 40.909 0.00 0.00 0.00 3.28
76 77 0.681175 AGGGTTGCAGATTGTTTGGC 59.319 50.000 0.00 0.00 0.00 4.52
77 78 0.320683 GGGTTGCAGATTGTTTGGCC 60.321 55.000 0.00 0.00 0.00 5.36
78 79 0.681175 GGTTGCAGATTGTTTGGCCT 59.319 50.000 3.32 0.00 0.00 5.19
79 80 1.337167 GGTTGCAGATTGTTTGGCCTC 60.337 52.381 3.32 0.00 0.00 4.70
80 81 1.615392 GTTGCAGATTGTTTGGCCTCT 59.385 47.619 3.32 0.00 0.00 3.69
81 82 1.999648 TGCAGATTGTTTGGCCTCTT 58.000 45.000 3.32 0.00 0.00 2.85
82 83 3.153369 TGCAGATTGTTTGGCCTCTTA 57.847 42.857 3.32 0.00 0.00 2.10
83 84 3.700538 TGCAGATTGTTTGGCCTCTTAT 58.299 40.909 3.32 0.00 0.00 1.73
84 85 4.854173 TGCAGATTGTTTGGCCTCTTATA 58.146 39.130 3.32 0.00 0.00 0.98
85 86 4.883585 TGCAGATTGTTTGGCCTCTTATAG 59.116 41.667 3.32 0.00 0.00 1.31
86 87 4.261363 GCAGATTGTTTGGCCTCTTATAGC 60.261 45.833 3.32 0.00 0.00 2.97
94 95 2.246719 GCCTCTTATAGCCACACTGG 57.753 55.000 0.00 0.00 41.55 4.00
95 96 1.202698 GCCTCTTATAGCCACACTGGG 60.203 57.143 0.00 0.00 38.19 4.45
97 98 2.103263 CCTCTTATAGCCACACTGGGTC 59.897 54.545 0.00 0.00 46.99 4.46
98 99 3.034635 CTCTTATAGCCACACTGGGTCT 58.965 50.000 0.00 0.00 46.99 3.85
99 100 3.450904 TCTTATAGCCACACTGGGTCTT 58.549 45.455 0.00 0.00 46.99 3.01
100 101 3.197766 TCTTATAGCCACACTGGGTCTTG 59.802 47.826 0.00 0.00 46.99 3.02
101 102 1.362224 ATAGCCACACTGGGTCTTGT 58.638 50.000 0.00 0.00 46.99 3.16
102 103 0.396435 TAGCCACACTGGGTCTTGTG 59.604 55.000 0.00 0.00 46.99 3.33
103 104 2.555547 GCCACACTGGGTCTTGTGC 61.556 63.158 0.00 0.00 41.57 4.57
104 105 1.149174 CCACACTGGGTCTTGTGCT 59.851 57.895 0.00 0.00 41.57 4.40
105 106 1.168407 CCACACTGGGTCTTGTGCTG 61.168 60.000 0.00 0.00 41.57 4.41
106 107 1.526917 ACACTGGGTCTTGTGCTGC 60.527 57.895 0.00 0.00 37.68 5.25
107 108 1.526686 CACTGGGTCTTGTGCTGCA 60.527 57.895 0.00 0.00 0.00 4.41
108 109 1.228063 ACTGGGTCTTGTGCTGCAG 60.228 57.895 10.11 10.11 0.00 4.41
109 110 1.228063 CTGGGTCTTGTGCTGCAGT 60.228 57.895 16.64 0.00 0.00 4.40
110 111 1.512996 CTGGGTCTTGTGCTGCAGTG 61.513 60.000 16.64 1.27 0.00 3.66
111 112 1.526917 GGGTCTTGTGCTGCAGTGT 60.527 57.895 16.64 0.00 0.00 3.55
112 113 1.650912 GGTCTTGTGCTGCAGTGTG 59.349 57.895 16.64 1.99 0.00 3.82
113 114 1.650912 GTCTTGTGCTGCAGTGTGG 59.349 57.895 16.64 2.73 0.00 4.17
114 115 1.097547 GTCTTGTGCTGCAGTGTGGT 61.098 55.000 16.64 0.00 0.00 4.16
115 116 0.394216 TCTTGTGCTGCAGTGTGGTT 60.394 50.000 16.64 0.00 0.00 3.67
116 117 0.248743 CTTGTGCTGCAGTGTGGTTG 60.249 55.000 16.64 0.00 0.00 3.77
117 118 0.964860 TTGTGCTGCAGTGTGGTTGT 60.965 50.000 16.64 0.00 0.00 3.32
118 119 0.107459 TGTGCTGCAGTGTGGTTGTA 60.107 50.000 16.64 0.00 0.00 2.41
119 120 0.588252 GTGCTGCAGTGTGGTTGTAG 59.412 55.000 16.64 0.00 0.00 2.74
120 121 0.534877 TGCTGCAGTGTGGTTGTAGG 60.535 55.000 16.64 0.00 0.00 3.18
121 122 0.250295 GCTGCAGTGTGGTTGTAGGA 60.250 55.000 16.64 0.00 0.00 2.94
122 123 1.800805 CTGCAGTGTGGTTGTAGGAG 58.199 55.000 5.25 0.00 0.00 3.69
123 124 1.070758 CTGCAGTGTGGTTGTAGGAGT 59.929 52.381 5.25 0.00 0.00 3.85
124 125 1.488812 TGCAGTGTGGTTGTAGGAGTT 59.511 47.619 0.00 0.00 0.00 3.01
125 126 2.143925 GCAGTGTGGTTGTAGGAGTTC 58.856 52.381 0.00 0.00 0.00 3.01
126 127 2.767505 CAGTGTGGTTGTAGGAGTTCC 58.232 52.381 0.00 0.00 0.00 3.62
127 128 1.343465 AGTGTGGTTGTAGGAGTTCCG 59.657 52.381 0.00 0.00 42.08 4.30
128 129 0.034337 TGTGGTTGTAGGAGTTCCGC 59.966 55.000 0.00 0.00 42.08 5.54
129 130 0.672711 GTGGTTGTAGGAGTTCCGCC 60.673 60.000 0.00 0.00 42.08 6.13
130 131 1.447314 GGTTGTAGGAGTTCCGCCG 60.447 63.158 0.00 0.00 42.08 6.46
131 132 1.291272 GTTGTAGGAGTTCCGCCGT 59.709 57.895 0.00 0.00 42.08 5.68
132 133 1.012486 GTTGTAGGAGTTCCGCCGTG 61.012 60.000 0.00 0.00 42.08 4.94
133 134 1.466025 TTGTAGGAGTTCCGCCGTGT 61.466 55.000 0.00 0.00 42.08 4.49
134 135 0.608856 TGTAGGAGTTCCGCCGTGTA 60.609 55.000 0.00 0.00 42.08 2.90
135 136 0.743097 GTAGGAGTTCCGCCGTGTAT 59.257 55.000 0.00 0.00 42.08 2.29
136 137 1.949525 GTAGGAGTTCCGCCGTGTATA 59.050 52.381 0.00 0.00 42.08 1.47
137 138 1.477553 AGGAGTTCCGCCGTGTATAA 58.522 50.000 0.00 0.00 42.08 0.98
138 139 1.407979 AGGAGTTCCGCCGTGTATAAG 59.592 52.381 0.00 0.00 42.08 1.73
139 140 1.537562 GGAGTTCCGCCGTGTATAAGG 60.538 57.143 0.00 0.00 0.00 2.69
140 141 0.462789 AGTTCCGCCGTGTATAAGGG 59.537 55.000 0.00 0.00 36.85 3.95
141 142 0.461135 GTTCCGCCGTGTATAAGGGA 59.539 55.000 0.00 0.00 35.72 4.20
142 143 1.134729 GTTCCGCCGTGTATAAGGGAA 60.135 52.381 0.00 0.00 35.72 3.97
143 144 0.461135 TCCGCCGTGTATAAGGGAAC 59.539 55.000 0.00 0.00 35.72 3.62
144 145 5.543771 GTTCCGCCGTGTATAAGGGAACT 62.544 52.174 12.22 0.00 46.12 3.01
154 155 2.915869 AGGGAACTTGTGCCACGT 59.084 55.556 0.00 0.00 41.19 4.49
155 156 1.525995 AGGGAACTTGTGCCACGTG 60.526 57.895 9.08 9.08 41.19 4.49
156 157 1.525077 GGGAACTTGTGCCACGTGA 60.525 57.895 19.30 0.00 37.76 4.35
157 158 0.889186 GGGAACTTGTGCCACGTGAT 60.889 55.000 19.30 0.00 37.76 3.06
158 159 0.951558 GGAACTTGTGCCACGTGATT 59.048 50.000 19.30 0.00 0.00 2.57
159 160 1.334960 GGAACTTGTGCCACGTGATTG 60.335 52.381 19.30 0.72 0.00 2.67
160 161 1.333619 GAACTTGTGCCACGTGATTGT 59.666 47.619 19.30 4.05 0.00 2.71
161 162 2.248280 ACTTGTGCCACGTGATTGTA 57.752 45.000 19.30 0.00 0.00 2.41
162 163 2.778299 ACTTGTGCCACGTGATTGTAT 58.222 42.857 19.30 0.00 0.00 2.29
163 164 2.742053 ACTTGTGCCACGTGATTGTATC 59.258 45.455 19.30 0.81 0.00 2.24
164 165 1.732941 TGTGCCACGTGATTGTATCC 58.267 50.000 19.30 0.00 0.00 2.59
165 166 1.014352 GTGCCACGTGATTGTATCCC 58.986 55.000 19.30 0.00 0.00 3.85
166 167 0.908910 TGCCACGTGATTGTATCCCT 59.091 50.000 19.30 0.00 0.00 4.20
167 168 2.112190 TGCCACGTGATTGTATCCCTA 58.888 47.619 19.30 0.00 0.00 3.53
168 169 2.703536 TGCCACGTGATTGTATCCCTAT 59.296 45.455 19.30 0.00 0.00 2.57
169 170 3.067106 GCCACGTGATTGTATCCCTATG 58.933 50.000 19.30 0.00 0.00 2.23
170 171 3.494398 GCCACGTGATTGTATCCCTATGT 60.494 47.826 19.30 0.00 0.00 2.29
171 172 4.703897 CCACGTGATTGTATCCCTATGTT 58.296 43.478 19.30 0.00 0.00 2.71
172 173 4.750098 CCACGTGATTGTATCCCTATGTTC 59.250 45.833 19.30 0.00 0.00 3.18
173 174 5.356426 CACGTGATTGTATCCCTATGTTCA 58.644 41.667 10.90 0.00 0.00 3.18
174 175 5.991606 CACGTGATTGTATCCCTATGTTCAT 59.008 40.000 10.90 0.00 0.00 2.57
175 176 5.991606 ACGTGATTGTATCCCTATGTTCATG 59.008 40.000 0.00 0.00 0.00 3.07
176 177 5.409520 CGTGATTGTATCCCTATGTTCATGG 59.590 44.000 0.00 0.00 0.00 3.66
177 178 6.533730 GTGATTGTATCCCTATGTTCATGGA 58.466 40.000 0.00 0.00 0.00 3.41
178 179 6.998074 GTGATTGTATCCCTATGTTCATGGAA 59.002 38.462 0.00 0.00 0.00 3.53
179 180 7.667219 GTGATTGTATCCCTATGTTCATGGAAT 59.333 37.037 0.00 0.00 0.00 3.01
180 181 8.889445 TGATTGTATCCCTATGTTCATGGAATA 58.111 33.333 0.00 0.00 0.00 1.75
181 182 9.739276 GATTGTATCCCTATGTTCATGGAATAA 57.261 33.333 0.00 0.00 0.00 1.40
183 184 9.928618 TTGTATCCCTATGTTCATGGAATAAAA 57.071 29.630 0.00 0.00 0.00 1.52
184 185 9.349713 TGTATCCCTATGTTCATGGAATAAAAC 57.650 33.333 0.00 0.00 0.00 2.43
185 186 9.574516 GTATCCCTATGTTCATGGAATAAAACT 57.425 33.333 0.00 0.00 0.00 2.66
186 187 8.697507 ATCCCTATGTTCATGGAATAAAACTC 57.302 34.615 0.00 0.00 0.00 3.01
187 188 7.638444 TCCCTATGTTCATGGAATAAAACTCA 58.362 34.615 0.00 0.00 0.00 3.41
188 189 7.556275 TCCCTATGTTCATGGAATAAAACTCAC 59.444 37.037 0.00 0.00 0.00 3.51
189 190 7.557719 CCCTATGTTCATGGAATAAAACTCACT 59.442 37.037 0.00 0.00 0.00 3.41
190 191 8.960591 CCTATGTTCATGGAATAAAACTCACTT 58.039 33.333 0.00 0.00 0.00 3.16
194 195 9.528018 TGTTCATGGAATAAAACTCACTTTTTC 57.472 29.630 0.00 0.00 33.84 2.29
195 196 8.978539 GTTCATGGAATAAAACTCACTTTTTCC 58.021 33.333 0.00 0.00 33.84 3.13
196 197 7.666623 TCATGGAATAAAACTCACTTTTTCCC 58.333 34.615 0.00 0.00 33.84 3.97
197 198 6.079424 TGGAATAAAACTCACTTTTTCCCG 57.921 37.500 0.00 0.00 33.84 5.14
198 199 4.921515 GGAATAAAACTCACTTTTTCCCGC 59.078 41.667 0.00 0.00 33.84 6.13
199 200 2.882927 AAAACTCACTTTTTCCCGCC 57.117 45.000 0.00 0.00 0.00 6.13
200 201 1.770294 AAACTCACTTTTTCCCGCCA 58.230 45.000 0.00 0.00 0.00 5.69
201 202 1.770294 AACTCACTTTTTCCCGCCAA 58.230 45.000 0.00 0.00 0.00 4.52
202 203 1.770294 ACTCACTTTTTCCCGCCAAA 58.230 45.000 0.00 0.00 0.00 3.28
203 204 2.104170 ACTCACTTTTTCCCGCCAAAA 58.896 42.857 0.00 0.00 0.00 2.44
204 205 2.100749 ACTCACTTTTTCCCGCCAAAAG 59.899 45.455 9.26 9.26 43.89 2.27
205 206 2.360801 CTCACTTTTTCCCGCCAAAAGA 59.639 45.455 15.05 0.59 41.81 2.52
206 207 2.761208 TCACTTTTTCCCGCCAAAAGAA 59.239 40.909 15.05 4.44 41.81 2.52
277 279 0.458370 GCCAATCATTGCCACGTTCC 60.458 55.000 0.00 0.00 0.00 3.62
382 388 2.280628 GCTGTCCAAAGTCTTATCCGG 58.719 52.381 0.00 0.00 0.00 5.14
385 391 3.443052 TGTCCAAAGTCTTATCCGGGTA 58.557 45.455 0.00 0.00 0.00 3.69
437 468 0.031721 GTCACTCGAGGTTCGTTGGT 59.968 55.000 18.41 0.00 41.35 3.67
438 469 0.031585 TCACTCGAGGTTCGTTGGTG 59.968 55.000 18.41 3.26 41.35 4.17
480 511 3.406200 CCTGGCTCCTGGTCCTGG 61.406 72.222 8.53 8.53 35.57 4.45
484 515 2.607750 GCTCCTGGTCCTGGGACA 60.608 66.667 19.70 6.86 46.20 4.02
515 569 0.389391 CGAGCACCCCCTACACATAG 59.611 60.000 0.00 0.00 0.00 2.23
544 615 5.144100 ACAAGGGAAAAACATACACATGGA 58.856 37.500 0.00 0.00 36.39 3.41
550 621 4.519540 AAAACATACACATGGACTTGGC 57.480 40.909 0.00 0.00 36.39 4.52
552 623 2.991250 ACATACACATGGACTTGGCTC 58.009 47.619 0.00 0.00 36.39 4.70
614 689 3.775314 CGCCTGACGCAACGAATA 58.225 55.556 0.00 0.00 37.30 1.75
1011 1095 3.429141 GTCGTCGACGGCTCCTCA 61.429 66.667 33.44 12.29 41.36 3.86
1015 1099 1.810532 GTCGACGGCTCCTCAATCT 59.189 57.895 0.00 0.00 0.00 2.40
1139 1233 2.428890 CGCTCTCTCAGGTGGAGTAATT 59.571 50.000 0.00 0.00 44.40 1.40
1143 1254 4.425772 TCTCTCAGGTGGAGTAATTTGGA 58.574 43.478 0.00 0.00 44.40 3.53
1159 1270 0.107993 TGGATTCTTGCTCGAGCCTG 60.108 55.000 33.23 24.49 41.18 4.85
1201 1312 0.673644 CACCGGCATTCCTTCGTTCT 60.674 55.000 0.00 0.00 0.00 3.01
1206 1317 1.804748 GGCATTCCTTCGTTCTTTCGT 59.195 47.619 0.00 0.00 0.00 3.85
1207 1318 2.225727 GGCATTCCTTCGTTCTTTCGTT 59.774 45.455 0.00 0.00 0.00 3.85
1208 1319 3.479949 GCATTCCTTCGTTCTTTCGTTC 58.520 45.455 0.00 0.00 0.00 3.95
1209 1320 3.667166 GCATTCCTTCGTTCTTTCGTTCC 60.667 47.826 0.00 0.00 0.00 3.62
1210 1321 3.464111 TTCCTTCGTTCTTTCGTTCCT 57.536 42.857 0.00 0.00 0.00 3.36
1211 1322 3.464111 TCCTTCGTTCTTTCGTTCCTT 57.536 42.857 0.00 0.00 0.00 3.36
1212 1323 3.387397 TCCTTCGTTCTTTCGTTCCTTC 58.613 45.455 0.00 0.00 0.00 3.46
1360 1471 4.615815 GGATGCCGCCGATGCTCT 62.616 66.667 0.00 0.00 34.43 4.09
1484 1595 2.659244 GTTCGACGGCGGTGACAA 60.659 61.111 12.58 0.00 38.28 3.18
1785 1896 1.139095 CTCCGTCCTCAGGTAACGC 59.861 63.158 0.00 0.00 46.39 4.84
1831 1956 3.315142 TTCTCCGCTGCAATCCGCT 62.315 57.895 0.00 0.00 43.06 5.52
1832 1957 3.570638 CTCCGCTGCAATCCGCTG 61.571 66.667 0.00 0.00 43.06 5.18
1850 1981 1.662629 CTGCAGGTGTTCGATCATGAC 59.337 52.381 5.57 0.00 0.00 3.06
1854 1985 3.588955 CAGGTGTTCGATCATGACTTCA 58.411 45.455 0.00 0.00 0.00 3.02
1871 2002 1.367659 TCATGATCACGCGAAATGCA 58.632 45.000 15.93 4.34 46.97 3.96
2156 2287 3.996744 GAGGGTCTTCGACGTCGCG 62.997 68.421 32.19 23.86 39.60 5.87
2297 2428 2.189521 GTCGGGCCGGTGATCAAT 59.810 61.111 27.98 0.00 0.00 2.57
2339 2470 4.824515 CCGCTCGGAGGGAGGACT 62.825 72.222 22.15 0.00 43.36 3.85
2382 2514 2.563261 AGATCCGATCAATGCAGCAT 57.437 45.000 11.01 0.52 0.00 3.79
2383 2515 2.860009 AGATCCGATCAATGCAGCATT 58.140 42.857 15.33 15.33 34.04 3.56
2398 2530 0.459585 GCATTGCAGCACCTTCCATG 60.460 55.000 3.15 0.00 0.00 3.66
2431 2564 1.078848 CAGCCCCTTTCCTCACGAG 60.079 63.158 0.00 0.00 0.00 4.18
2434 2567 0.253327 GCCCCTTTCCTCACGAGAAT 59.747 55.000 0.00 0.00 0.00 2.40
2460 2596 9.970395 TTCTGTAAATCATCCATGCATTTTATC 57.030 29.630 0.00 0.00 0.00 1.75
2462 2598 9.923143 CTGTAAATCATCCATGCATTTTATCAT 57.077 29.630 0.00 0.00 0.00 2.45
2550 2688 2.464459 CGATCCTTGCTTGCCCGTC 61.464 63.158 0.00 0.00 0.00 4.79
2725 2863 2.558359 CAATTTCAGTGTTGGAGGGTCC 59.442 50.000 0.00 0.00 36.96 4.46
2735 2873 2.866923 TGGAGGGTCCATATCTGACA 57.133 50.000 0.00 0.00 42.67 3.58
2736 2874 2.682594 TGGAGGGTCCATATCTGACAG 58.317 52.381 0.00 0.00 42.67 3.51
2746 2884 5.049818 GTCCATATCTGACAGCATTGCTAAC 60.050 44.000 11.55 8.87 36.40 2.34
2783 2921 3.522553 AGCGTGTAAGCTTCTTGATACC 58.477 45.455 0.00 0.00 46.80 2.73
2810 2948 4.573607 TGATGTCAGATCTGCATGCTAAAC 59.426 41.667 26.77 15.43 31.15 2.01
2904 3044 5.189180 GGACAAATTCCAGTTATGAGCTCT 58.811 41.667 16.19 3.04 45.10 4.09
2941 3081 7.093509 TGGCATCTCTGTAAGTAGAAACATACA 60.094 37.037 0.00 0.00 37.43 2.29
2975 3119 3.255395 TGCGCAAAATGATTTTCTGGAGA 59.745 39.130 8.16 0.00 0.00 3.71
3162 3311 2.290832 TGGCTTCAACATGCAGTCCATA 60.291 45.455 0.00 0.00 31.47 2.74
3177 3326 2.095059 GTCCATACTTTGCCAAGCTGTG 60.095 50.000 0.00 0.00 32.57 3.66
3200 3349 3.154710 CTGCATTATCCAGCCATGATGT 58.845 45.455 0.00 0.00 0.00 3.06
3272 3437 5.807011 ACAACTTGAATTCTTGTTCAACAGC 59.193 36.000 7.05 0.00 41.70 4.40
3335 3500 2.345641 CCTCAACAGAACGAGCATTACG 59.654 50.000 0.00 0.00 0.00 3.18
3346 3511 2.222596 CGAGCATTACGTTCAAGTGAGC 60.223 50.000 0.00 0.00 0.00 4.26
3347 3512 2.736721 GAGCATTACGTTCAAGTGAGCA 59.263 45.455 0.00 0.00 0.00 4.26
3400 3565 9.233232 CTTTTTAGTTGAGCGTTCTATTTTTGT 57.767 29.630 0.00 0.00 0.00 2.83
3401 3566 8.555166 TTTTAGTTGAGCGTTCTATTTTTGTG 57.445 30.769 0.00 0.00 0.00 3.33
3403 3568 3.552604 TGAGCGTTCTATTTTTGTGCC 57.447 42.857 0.00 0.00 0.00 5.01
3405 3570 3.058293 TGAGCGTTCTATTTTTGTGCCTG 60.058 43.478 0.00 0.00 0.00 4.85
3407 3572 2.979813 GCGTTCTATTTTTGTGCCTGTG 59.020 45.455 0.00 0.00 0.00 3.66
3408 3573 3.304391 GCGTTCTATTTTTGTGCCTGTGA 60.304 43.478 0.00 0.00 0.00 3.58
3410 3575 5.391523 GCGTTCTATTTTTGTGCCTGTGATA 60.392 40.000 0.00 0.00 0.00 2.15
3488 3657 7.709182 GGGAATAACCTTAACCAACAATAATGC 59.291 37.037 0.00 0.00 38.98 3.56
3540 3709 3.181475 GGATAGTGAGAAGCCATCGACAA 60.181 47.826 0.00 0.00 0.00 3.18
3541 3710 2.839486 AGTGAGAAGCCATCGACAAA 57.161 45.000 0.00 0.00 0.00 2.83
3546 3715 3.629855 TGAGAAGCCATCGACAAAACAAA 59.370 39.130 0.00 0.00 0.00 2.83
3562 3736 5.520376 AAACAAAAGTGTGAGAATGAGGG 57.480 39.130 0.00 0.00 38.27 4.30
3582 3756 2.227388 GGCATGCATATCTAACTGGCAC 59.773 50.000 21.36 0.00 37.30 5.01
3637 3812 7.446001 TTGCCAATGTTTTTGTTCTTTCTTT 57.554 28.000 0.00 0.00 0.00 2.52
3640 3815 9.823647 TGCCAATGTTTTTGTTCTTTCTTTATA 57.176 25.926 0.00 0.00 0.00 0.98
3702 7070 8.792830 ATATGCAACTGTACACTATGAACTTT 57.207 30.769 0.00 0.00 0.00 2.66
3844 9350 4.618920 TCGAAGAAAGTTTAAGGCCTCT 57.381 40.909 5.23 0.00 0.00 3.69
3845 9351 4.566987 TCGAAGAAAGTTTAAGGCCTCTC 58.433 43.478 5.23 0.00 0.00 3.20
3846 9352 4.283722 TCGAAGAAAGTTTAAGGCCTCTCT 59.716 41.667 5.23 0.00 0.00 3.10
3847 9353 5.479375 TCGAAGAAAGTTTAAGGCCTCTCTA 59.521 40.000 5.23 0.00 0.00 2.43
3848 9354 6.154706 TCGAAGAAAGTTTAAGGCCTCTCTAT 59.845 38.462 5.23 0.00 0.00 1.98
3849 9355 6.819146 CGAAGAAAGTTTAAGGCCTCTCTATT 59.181 38.462 5.23 0.00 0.00 1.73
3850 9356 7.010645 CGAAGAAAGTTTAAGGCCTCTCTATTC 59.989 40.741 5.23 7.37 0.00 1.75
3851 9357 6.342111 AGAAAGTTTAAGGCCTCTCTATTCG 58.658 40.000 5.23 0.00 0.00 3.34
3852 9358 5.934402 AAGTTTAAGGCCTCTCTATTCGA 57.066 39.130 5.23 0.00 0.00 3.71
3853 9359 5.934402 AGTTTAAGGCCTCTCTATTCGAA 57.066 39.130 5.23 0.00 0.00 3.71
3854 9360 5.908341 AGTTTAAGGCCTCTCTATTCGAAG 58.092 41.667 5.23 0.00 0.00 3.79
3855 9361 5.657302 AGTTTAAGGCCTCTCTATTCGAAGA 59.343 40.000 5.23 0.00 0.00 2.87
3856 9362 5.517322 TTAAGGCCTCTCTATTCGAAGAC 57.483 43.478 5.23 0.00 34.32 3.01
3859 9365 4.730966 AGGCCTCTCTATTCGAAGACATA 58.269 43.478 0.00 0.00 34.32 2.29
4047 9575 5.481105 ACAACATATGCATTCCAAAACAGG 58.519 37.500 3.54 0.00 0.00 4.00
4144 9678 9.445786 AAACAGTTTATCGTTCAATACAACAAG 57.554 29.630 0.00 0.00 0.00 3.16
4151 9685 4.149221 TCGTTCAATACAACAAGTAGTGCG 59.851 41.667 0.00 0.00 45.74 5.34
4211 9748 4.171005 CGCACAAATCATGATGCTCTTTT 58.829 39.130 9.46 0.00 35.35 2.27
4232 9769 1.378382 CGTCCATTCCATGCCCACA 60.378 57.895 0.00 0.00 0.00 4.17
4238 9775 0.324645 ATTCCATGCCCACAACTCCC 60.325 55.000 0.00 0.00 0.00 4.30
4625 10163 3.763897 GGTTTGCCACTTTGGATAGATGT 59.236 43.478 0.00 0.00 40.96 3.06
4720 10258 7.417003 CCATTTGCAATCTTATTCATCAGTGGA 60.417 37.037 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.034410 ACTCCCTTTCCTCCATAAGAGAC 58.966 47.826 0.00 0.00 46.50 3.36
2 3 4.354208 ACTCCCTTTCCTCCATAAGAGA 57.646 45.455 0.00 0.00 46.50 3.10
3 4 4.442192 CGAACTCCCTTTCCTCCATAAGAG 60.442 50.000 0.00 0.00 42.83 2.85
4 5 3.451178 CGAACTCCCTTTCCTCCATAAGA 59.549 47.826 0.00 0.00 0.00 2.10
5 6 3.197983 ACGAACTCCCTTTCCTCCATAAG 59.802 47.826 0.00 0.00 0.00 1.73
6 7 3.178865 ACGAACTCCCTTTCCTCCATAA 58.821 45.455 0.00 0.00 0.00 1.90
7 8 2.829023 ACGAACTCCCTTTCCTCCATA 58.171 47.619 0.00 0.00 0.00 2.74
8 9 1.657804 ACGAACTCCCTTTCCTCCAT 58.342 50.000 0.00 0.00 0.00 3.41
9 10 1.346722 GAACGAACTCCCTTTCCTCCA 59.653 52.381 0.00 0.00 0.00 3.86
10 11 1.338864 GGAACGAACTCCCTTTCCTCC 60.339 57.143 0.00 0.00 35.56 4.30
11 12 2.096220 GGAACGAACTCCCTTTCCTC 57.904 55.000 0.00 0.00 35.56 3.71
39 40 9.796180 TGCAACCCTATTTTAACTTCTAGTAAA 57.204 29.630 0.00 0.00 0.00 2.01
40 41 9.444600 CTGCAACCCTATTTTAACTTCTAGTAA 57.555 33.333 0.00 0.00 0.00 2.24
41 42 8.818860 TCTGCAACCCTATTTTAACTTCTAGTA 58.181 33.333 0.00 0.00 0.00 1.82
42 43 7.686434 TCTGCAACCCTATTTTAACTTCTAGT 58.314 34.615 0.00 0.00 0.00 2.57
43 44 8.738645 ATCTGCAACCCTATTTTAACTTCTAG 57.261 34.615 0.00 0.00 0.00 2.43
44 45 8.956426 CAATCTGCAACCCTATTTTAACTTCTA 58.044 33.333 0.00 0.00 0.00 2.10
45 46 7.451566 ACAATCTGCAACCCTATTTTAACTTCT 59.548 33.333 0.00 0.00 0.00 2.85
46 47 7.602753 ACAATCTGCAACCCTATTTTAACTTC 58.397 34.615 0.00 0.00 0.00 3.01
47 48 7.539034 ACAATCTGCAACCCTATTTTAACTT 57.461 32.000 0.00 0.00 0.00 2.66
48 49 7.539034 AACAATCTGCAACCCTATTTTAACT 57.461 32.000 0.00 0.00 0.00 2.24
49 50 7.117667 CCAAACAATCTGCAACCCTATTTTAAC 59.882 37.037 0.00 0.00 0.00 2.01
50 51 7.158021 CCAAACAATCTGCAACCCTATTTTAA 58.842 34.615 0.00 0.00 0.00 1.52
51 52 6.696411 CCAAACAATCTGCAACCCTATTTTA 58.304 36.000 0.00 0.00 0.00 1.52
52 53 5.550290 CCAAACAATCTGCAACCCTATTTT 58.450 37.500 0.00 0.00 0.00 1.82
53 54 4.563374 GCCAAACAATCTGCAACCCTATTT 60.563 41.667 0.00 0.00 0.00 1.40
54 55 3.055891 GCCAAACAATCTGCAACCCTATT 60.056 43.478 0.00 0.00 0.00 1.73
55 56 2.497273 GCCAAACAATCTGCAACCCTAT 59.503 45.455 0.00 0.00 0.00 2.57
56 57 1.892474 GCCAAACAATCTGCAACCCTA 59.108 47.619 0.00 0.00 0.00 3.53
57 58 0.681175 GCCAAACAATCTGCAACCCT 59.319 50.000 0.00 0.00 0.00 4.34
58 59 0.320683 GGCCAAACAATCTGCAACCC 60.321 55.000 0.00 0.00 0.00 4.11
59 60 0.681175 AGGCCAAACAATCTGCAACC 59.319 50.000 5.01 0.00 0.00 3.77
60 61 1.615392 AGAGGCCAAACAATCTGCAAC 59.385 47.619 5.01 0.00 0.00 4.17
61 62 1.999648 AGAGGCCAAACAATCTGCAA 58.000 45.000 5.01 0.00 0.00 4.08
62 63 1.999648 AAGAGGCCAAACAATCTGCA 58.000 45.000 5.01 0.00 0.00 4.41
63 64 4.261363 GCTATAAGAGGCCAAACAATCTGC 60.261 45.833 5.01 0.00 0.00 4.26
64 65 4.276926 GGCTATAAGAGGCCAAACAATCTG 59.723 45.833 5.01 0.00 46.84 2.90
65 66 4.464947 GGCTATAAGAGGCCAAACAATCT 58.535 43.478 5.01 0.00 46.84 2.40
66 67 4.837896 GGCTATAAGAGGCCAAACAATC 57.162 45.455 5.01 0.00 46.84 2.67
76 77 2.103263 GACCCAGTGTGGCTATAAGAGG 59.897 54.545 0.00 0.00 35.79 3.69
77 78 3.034635 AGACCCAGTGTGGCTATAAGAG 58.965 50.000 0.00 0.00 35.79 2.85
78 79 3.116096 AGACCCAGTGTGGCTATAAGA 57.884 47.619 0.00 0.00 35.79 2.10
79 80 3.055094 ACAAGACCCAGTGTGGCTATAAG 60.055 47.826 0.00 0.00 35.79 1.73
80 81 2.910319 ACAAGACCCAGTGTGGCTATAA 59.090 45.455 0.00 0.00 35.79 0.98
81 82 2.236146 CACAAGACCCAGTGTGGCTATA 59.764 50.000 0.00 0.00 41.19 1.31
82 83 1.003580 CACAAGACCCAGTGTGGCTAT 59.996 52.381 0.00 0.00 41.19 2.97
83 84 0.396435 CACAAGACCCAGTGTGGCTA 59.604 55.000 0.00 0.00 41.19 3.93
84 85 1.149174 CACAAGACCCAGTGTGGCT 59.851 57.895 0.00 0.00 41.19 4.75
85 86 2.555547 GCACAAGACCCAGTGTGGC 61.556 63.158 5.99 0.00 44.32 5.01
86 87 1.149174 AGCACAAGACCCAGTGTGG 59.851 57.895 5.99 0.00 44.32 4.17
87 88 1.789078 GCAGCACAAGACCCAGTGTG 61.789 60.000 0.00 0.00 46.40 3.82
88 89 1.526917 GCAGCACAAGACCCAGTGT 60.527 57.895 0.00 0.00 38.02 3.55
89 90 1.512996 CTGCAGCACAAGACCCAGTG 61.513 60.000 0.00 0.00 38.74 3.66
90 91 1.228063 CTGCAGCACAAGACCCAGT 60.228 57.895 0.00 0.00 0.00 4.00
91 92 1.228063 ACTGCAGCACAAGACCCAG 60.228 57.895 15.27 0.00 0.00 4.45
92 93 1.526686 CACTGCAGCACAAGACCCA 60.527 57.895 15.27 0.00 0.00 4.51
93 94 1.526917 ACACTGCAGCACAAGACCC 60.527 57.895 15.27 0.00 0.00 4.46
94 95 1.650912 CACACTGCAGCACAAGACC 59.349 57.895 15.27 0.00 0.00 3.85
95 96 1.097547 ACCACACTGCAGCACAAGAC 61.098 55.000 15.27 0.00 0.00 3.01
96 97 0.394216 AACCACACTGCAGCACAAGA 60.394 50.000 15.27 0.00 0.00 3.02
97 98 0.248743 CAACCACACTGCAGCACAAG 60.249 55.000 15.27 1.41 0.00 3.16
98 99 0.964860 ACAACCACACTGCAGCACAA 60.965 50.000 15.27 0.00 0.00 3.33
99 100 0.107459 TACAACCACACTGCAGCACA 60.107 50.000 15.27 0.00 0.00 4.57
100 101 0.588252 CTACAACCACACTGCAGCAC 59.412 55.000 15.27 0.00 0.00 4.40
101 102 0.534877 CCTACAACCACACTGCAGCA 60.535 55.000 15.27 0.00 0.00 4.41
102 103 0.250295 TCCTACAACCACACTGCAGC 60.250 55.000 15.27 0.00 0.00 5.25
103 104 1.070758 ACTCCTACAACCACACTGCAG 59.929 52.381 13.48 13.48 0.00 4.41
104 105 1.128200 ACTCCTACAACCACACTGCA 58.872 50.000 0.00 0.00 0.00 4.41
105 106 2.143925 GAACTCCTACAACCACACTGC 58.856 52.381 0.00 0.00 0.00 4.40
106 107 2.767505 GGAACTCCTACAACCACACTG 58.232 52.381 0.00 0.00 0.00 3.66
107 108 1.343465 CGGAACTCCTACAACCACACT 59.657 52.381 0.00 0.00 0.00 3.55
108 109 1.792006 CGGAACTCCTACAACCACAC 58.208 55.000 0.00 0.00 0.00 3.82
109 110 0.034337 GCGGAACTCCTACAACCACA 59.966 55.000 0.00 0.00 0.00 4.17
110 111 0.672711 GGCGGAACTCCTACAACCAC 60.673 60.000 0.00 0.00 0.00 4.16
111 112 1.675219 GGCGGAACTCCTACAACCA 59.325 57.895 0.00 0.00 0.00 3.67
112 113 1.447314 CGGCGGAACTCCTACAACC 60.447 63.158 0.00 0.00 0.00 3.77
113 114 1.012486 CACGGCGGAACTCCTACAAC 61.012 60.000 13.24 0.00 0.00 3.32
114 115 1.290955 CACGGCGGAACTCCTACAA 59.709 57.895 13.24 0.00 0.00 2.41
115 116 0.608856 TACACGGCGGAACTCCTACA 60.609 55.000 13.24 0.00 0.00 2.74
116 117 0.743097 ATACACGGCGGAACTCCTAC 59.257 55.000 13.24 0.00 0.00 3.18
117 118 2.346766 TATACACGGCGGAACTCCTA 57.653 50.000 13.24 0.00 0.00 2.94
118 119 1.407979 CTTATACACGGCGGAACTCCT 59.592 52.381 13.24 0.00 0.00 3.69
119 120 1.537562 CCTTATACACGGCGGAACTCC 60.538 57.143 13.24 0.00 0.00 3.85
120 121 1.537562 CCCTTATACACGGCGGAACTC 60.538 57.143 13.24 0.00 0.00 3.01
121 122 0.462789 CCCTTATACACGGCGGAACT 59.537 55.000 13.24 0.00 0.00 3.01
122 123 0.461135 TCCCTTATACACGGCGGAAC 59.539 55.000 13.24 0.00 0.00 3.62
123 124 1.134729 GTTCCCTTATACACGGCGGAA 60.135 52.381 13.24 0.00 0.00 4.30
124 125 0.461135 GTTCCCTTATACACGGCGGA 59.539 55.000 13.24 0.00 0.00 5.54
125 126 0.462789 AGTTCCCTTATACACGGCGG 59.537 55.000 13.24 2.35 0.00 6.13
126 127 1.931172 CAAGTTCCCTTATACACGGCG 59.069 52.381 4.80 4.80 0.00 6.46
127 128 2.676342 CACAAGTTCCCTTATACACGGC 59.324 50.000 0.00 0.00 0.00 5.68
128 129 2.676342 GCACAAGTTCCCTTATACACGG 59.324 50.000 0.00 0.00 0.00 4.94
129 130 2.676342 GGCACAAGTTCCCTTATACACG 59.324 50.000 0.00 0.00 0.00 4.49
130 131 3.439129 GTGGCACAAGTTCCCTTATACAC 59.561 47.826 13.86 0.00 44.16 2.90
131 132 3.681593 GTGGCACAAGTTCCCTTATACA 58.318 45.455 13.86 0.00 44.16 2.29
132 133 2.676342 CGTGGCACAAGTTCCCTTATAC 59.324 50.000 19.09 0.00 44.16 1.47
133 134 2.980568 CGTGGCACAAGTTCCCTTATA 58.019 47.619 19.09 0.00 44.16 0.98
134 135 1.821216 CGTGGCACAAGTTCCCTTAT 58.179 50.000 19.09 0.00 44.16 1.73
135 136 3.315765 CGTGGCACAAGTTCCCTTA 57.684 52.632 19.09 0.00 44.16 2.69
136 137 4.157607 CGTGGCACAAGTTCCCTT 57.842 55.556 19.09 0.00 44.16 3.95
143 144 2.095853 GGATACAATCACGTGGCACAAG 59.904 50.000 19.09 9.22 44.16 3.16
144 145 2.080693 GGATACAATCACGTGGCACAA 58.919 47.619 19.09 2.40 44.16 3.33
145 146 1.677518 GGGATACAATCACGTGGCACA 60.678 52.381 19.09 0.00 39.74 4.57
146 147 1.014352 GGGATACAATCACGTGGCAC 58.986 55.000 17.00 7.79 39.74 5.01
147 148 0.908910 AGGGATACAATCACGTGGCA 59.091 50.000 17.00 0.00 37.89 4.92
148 149 2.902705 TAGGGATACAATCACGTGGC 57.097 50.000 17.00 0.00 37.89 5.01
149 150 4.336889 ACATAGGGATACAATCACGTGG 57.663 45.455 17.00 1.74 37.89 4.94
150 151 5.356426 TGAACATAGGGATACAATCACGTG 58.644 41.667 9.94 9.94 37.89 4.49
151 152 5.607939 TGAACATAGGGATACAATCACGT 57.392 39.130 0.00 0.00 37.89 4.49
152 153 5.409520 CCATGAACATAGGGATACAATCACG 59.590 44.000 0.00 0.00 37.89 4.35
153 154 6.533730 TCCATGAACATAGGGATACAATCAC 58.466 40.000 0.00 0.00 39.74 3.06
154 155 6.762077 TCCATGAACATAGGGATACAATCA 57.238 37.500 0.00 0.00 39.74 2.57
155 156 9.739276 TTATTCCATGAACATAGGGATACAATC 57.261 33.333 0.00 0.00 39.74 2.67
157 158 9.928618 TTTTATTCCATGAACATAGGGATACAA 57.071 29.630 0.00 0.00 39.74 2.41
158 159 9.349713 GTTTTATTCCATGAACATAGGGATACA 57.650 33.333 0.00 0.00 39.74 2.29
159 160 9.574516 AGTTTTATTCCATGAACATAGGGATAC 57.425 33.333 0.00 0.00 0.00 2.24
160 161 9.793259 GAGTTTTATTCCATGAACATAGGGATA 57.207 33.333 0.00 0.00 0.00 2.59
161 162 8.281531 TGAGTTTTATTCCATGAACATAGGGAT 58.718 33.333 0.00 0.00 0.00 3.85
162 163 7.556275 GTGAGTTTTATTCCATGAACATAGGGA 59.444 37.037 0.00 0.00 0.00 4.20
163 164 7.557719 AGTGAGTTTTATTCCATGAACATAGGG 59.442 37.037 0.00 0.00 0.00 3.53
164 165 8.511604 AGTGAGTTTTATTCCATGAACATAGG 57.488 34.615 0.00 0.00 0.00 2.57
168 169 9.528018 GAAAAAGTGAGTTTTATTCCATGAACA 57.472 29.630 0.00 0.00 37.37 3.18
169 170 8.978539 GGAAAAAGTGAGTTTTATTCCATGAAC 58.021 33.333 10.05 0.00 37.37 3.18
170 171 8.147704 GGGAAAAAGTGAGTTTTATTCCATGAA 58.852 33.333 14.76 0.00 37.00 2.57
171 172 7.523052 CGGGAAAAAGTGAGTTTTATTCCATGA 60.523 37.037 14.76 0.00 37.00 3.07
172 173 6.586082 CGGGAAAAAGTGAGTTTTATTCCATG 59.414 38.462 14.76 6.15 37.00 3.66
173 174 6.687604 CGGGAAAAAGTGAGTTTTATTCCAT 58.312 36.000 14.76 0.00 37.00 3.41
174 175 5.508320 GCGGGAAAAAGTGAGTTTTATTCCA 60.508 40.000 14.76 0.00 37.00 3.53
175 176 4.921515 GCGGGAAAAAGTGAGTTTTATTCC 59.078 41.667 7.41 7.41 37.37 3.01
176 177 4.921515 GGCGGGAAAAAGTGAGTTTTATTC 59.078 41.667 0.00 0.00 37.37 1.75
177 178 4.342665 TGGCGGGAAAAAGTGAGTTTTATT 59.657 37.500 0.00 0.00 37.37 1.40
178 179 3.892588 TGGCGGGAAAAAGTGAGTTTTAT 59.107 39.130 0.00 0.00 37.37 1.40
179 180 3.288964 TGGCGGGAAAAAGTGAGTTTTA 58.711 40.909 0.00 0.00 37.37 1.52
180 181 2.104170 TGGCGGGAAAAAGTGAGTTTT 58.896 42.857 0.00 0.00 40.26 2.43
181 182 1.770294 TGGCGGGAAAAAGTGAGTTT 58.230 45.000 0.00 0.00 0.00 2.66
182 183 1.770294 TTGGCGGGAAAAAGTGAGTT 58.230 45.000 0.00 0.00 0.00 3.01
183 184 1.770294 TTTGGCGGGAAAAAGTGAGT 58.230 45.000 0.00 0.00 0.00 3.41
184 185 2.360801 TCTTTTGGCGGGAAAAAGTGAG 59.639 45.455 8.12 0.00 42.59 3.51
185 186 2.379972 TCTTTTGGCGGGAAAAAGTGA 58.620 42.857 8.12 0.00 42.59 3.41
186 187 2.880963 TCTTTTGGCGGGAAAAAGTG 57.119 45.000 8.12 0.00 42.59 3.16
187 188 3.897141 TTTCTTTTGGCGGGAAAAAGT 57.103 38.095 8.12 0.00 42.59 2.66
188 189 5.295540 TGATTTTTCTTTTGGCGGGAAAAAG 59.704 36.000 17.30 11.25 45.56 2.27
189 190 5.186198 TGATTTTTCTTTTGGCGGGAAAAA 58.814 33.333 15.80 15.80 46.04 1.94
190 191 4.770795 TGATTTTTCTTTTGGCGGGAAAA 58.229 34.783 0.00 0.00 37.23 2.29
191 192 4.408182 TGATTTTTCTTTTGGCGGGAAA 57.592 36.364 0.00 0.00 0.00 3.13
192 193 4.314121 CATGATTTTTCTTTTGGCGGGAA 58.686 39.130 0.00 0.00 0.00 3.97
193 194 3.864160 GCATGATTTTTCTTTTGGCGGGA 60.864 43.478 0.00 0.00 0.00 5.14
194 195 2.416202 GCATGATTTTTCTTTTGGCGGG 59.584 45.455 0.00 0.00 0.00 6.13
195 196 2.416202 GGCATGATTTTTCTTTTGGCGG 59.584 45.455 0.00 0.00 0.00 6.13
196 197 2.416202 GGGCATGATTTTTCTTTTGGCG 59.584 45.455 0.00 0.00 0.00 5.69
197 198 3.410508 TGGGCATGATTTTTCTTTTGGC 58.589 40.909 0.00 0.00 0.00 4.52
198 199 4.644498 ACTGGGCATGATTTTTCTTTTGG 58.356 39.130 0.00 0.00 0.00 3.28
199 200 4.692155 GGACTGGGCATGATTTTTCTTTTG 59.308 41.667 0.00 0.00 0.00 2.44
200 201 4.561326 CGGACTGGGCATGATTTTTCTTTT 60.561 41.667 0.00 0.00 0.00 2.27
201 202 3.056607 CGGACTGGGCATGATTTTTCTTT 60.057 43.478 0.00 0.00 0.00 2.52
202 203 2.493278 CGGACTGGGCATGATTTTTCTT 59.507 45.455 0.00 0.00 0.00 2.52
203 204 2.094675 CGGACTGGGCATGATTTTTCT 58.905 47.619 0.00 0.00 0.00 2.52
204 205 1.134946 CCGGACTGGGCATGATTTTTC 59.865 52.381 0.00 0.00 0.00 2.29
205 206 1.185315 CCGGACTGGGCATGATTTTT 58.815 50.000 0.00 0.00 0.00 1.94
206 207 2.886382 CCGGACTGGGCATGATTTT 58.114 52.632 0.00 0.00 0.00 1.82
277 279 0.673644 AGGCTTCCATCGGTTCAACG 60.674 55.000 0.00 0.00 0.00 4.10
362 368 2.280628 CCGGATAAGACTTTGGACAGC 58.719 52.381 0.00 0.00 0.00 4.40
382 388 6.326375 CAGCCGAATCTCAAGATACTATACC 58.674 44.000 0.00 0.00 33.73 2.73
385 391 4.322349 GGCAGCCGAATCTCAAGATACTAT 60.322 45.833 0.00 0.00 33.73 2.12
437 468 1.006220 ACGTGCTCGCATCAACTCA 60.006 52.632 8.29 0.00 41.18 3.41
438 469 1.704582 GACGTGCTCGCATCAACTC 59.295 57.895 8.29 0.00 41.18 3.01
459 490 4.767255 GACCAGGAGCCAGGCACG 62.767 72.222 15.80 0.00 0.00 5.34
460 491 4.416738 GGACCAGGAGCCAGGCAC 62.417 72.222 15.80 7.41 0.00 5.01
461 492 4.664267 AGGACCAGGAGCCAGGCA 62.664 66.667 15.80 0.00 0.00 4.75
462 493 4.106925 CAGGACCAGGAGCCAGGC 62.107 72.222 1.84 1.84 0.00 4.85
463 494 3.406200 CCAGGACCAGGAGCCAGG 61.406 72.222 0.00 0.00 0.00 4.45
464 495 3.406200 CCCAGGACCAGGAGCCAG 61.406 72.222 4.06 0.00 0.00 4.85
465 496 3.940480 TCCCAGGACCAGGAGCCA 61.940 66.667 4.06 0.00 0.00 4.75
466 497 3.403558 GTCCCAGGACCAGGAGCC 61.404 72.222 4.06 0.00 39.08 4.70
467 498 2.607750 TGTCCCAGGACCAGGAGC 60.608 66.667 14.19 0.00 43.97 4.70
468 499 0.545309 TTCTGTCCCAGGACCAGGAG 60.545 60.000 14.19 5.10 43.97 3.69
469 500 0.836400 GTTCTGTCCCAGGACCAGGA 60.836 60.000 14.19 1.36 43.97 3.86
474 505 0.179134 CGATCGTTCTGTCCCAGGAC 60.179 60.000 10.02 10.02 44.77 3.85
480 511 0.248134 CTCGTCCGATCGTTCTGTCC 60.248 60.000 15.09 0.00 0.00 4.02
484 515 1.136984 GTGCTCGTCCGATCGTTCT 59.863 57.895 15.09 0.00 0.00 3.01
521 590 5.010617 GTCCATGTGTATGTTTTTCCCTTGT 59.989 40.000 0.00 0.00 32.21 3.16
533 604 1.935873 CGAGCCAAGTCCATGTGTATG 59.064 52.381 0.00 0.00 0.00 2.39
541 612 1.337071 GTATCGATCGAGCCAAGTCCA 59.663 52.381 23.84 0.00 0.00 4.02
544 615 2.799917 GCTTGTATCGATCGAGCCAAGT 60.800 50.000 35.23 20.43 37.73 3.16
550 621 3.355626 TCCTTGCTTGTATCGATCGAG 57.644 47.619 23.84 10.35 0.00 4.04
552 623 3.186909 TGTTCCTTGCTTGTATCGATCG 58.813 45.455 9.36 9.36 0.00 3.69
601 676 1.158434 GGGGTTTATTCGTTGCGTCA 58.842 50.000 0.00 0.00 0.00 4.35
614 689 2.452491 AGGGTGAGGCTGGGGTTT 60.452 61.111 0.00 0.00 0.00 3.27
1001 1085 2.636830 CAATGAAGATTGAGGAGCCGT 58.363 47.619 0.00 0.00 41.49 5.68
1011 1095 1.403249 GCGGCAACTGCAATGAAGATT 60.403 47.619 3.76 0.00 44.36 2.40
1015 1099 2.650196 GGCGGCAACTGCAATGAA 59.350 55.556 3.07 0.00 44.36 2.57
1093 1181 2.506217 CGTGGACATGGACGACGG 60.506 66.667 16.85 4.38 37.81 4.79
1139 1233 0.615331 AGGCTCGAGCAAGAATCCAA 59.385 50.000 36.27 0.00 44.36 3.53
1143 1254 1.537776 CGATCAGGCTCGAGCAAGAAT 60.538 52.381 36.27 23.18 44.36 2.40
1159 1270 0.179111 TCCATGAACGAGTGCCGATC 60.179 55.000 0.00 0.00 41.76 3.69
1167 1278 0.458543 CGGTGAGGTCCATGAACGAG 60.459 60.000 0.00 0.00 0.00 4.18
1168 1279 1.589630 CGGTGAGGTCCATGAACGA 59.410 57.895 0.00 0.00 0.00 3.85
1201 1312 0.882927 CCTGCGGTGAAGGAACGAAA 60.883 55.000 0.00 0.00 36.91 3.46
1206 1317 1.675219 GTACCCTGCGGTGAAGGAA 59.325 57.895 0.00 0.00 44.40 3.36
1207 1318 2.288025 GGTACCCTGCGGTGAAGGA 61.288 63.158 0.00 0.00 44.40 3.36
1208 1319 2.267961 GGTACCCTGCGGTGAAGG 59.732 66.667 0.00 0.00 44.40 3.46
1209 1320 1.079127 CTGGTACCCTGCGGTGAAG 60.079 63.158 10.07 0.00 44.40 3.02
1210 1321 0.907704 ATCTGGTACCCTGCGGTGAA 60.908 55.000 10.07 0.00 44.40 3.18
1211 1322 0.032912 TATCTGGTACCCTGCGGTGA 60.033 55.000 10.07 0.00 44.40 4.02
1212 1323 0.828022 TTATCTGGTACCCTGCGGTG 59.172 55.000 10.07 0.00 44.40 4.94
1259 1370 2.358125 CCCATGTCACGTTGCCGA 60.358 61.111 0.00 0.00 37.88 5.54
1484 1595 4.681978 GGTCGAACACTGGCGGCT 62.682 66.667 11.43 0.00 31.88 5.52
1491 1602 2.092323 TCGATGATCTGGTCGAACACT 58.908 47.619 0.00 0.00 43.14 3.55
1804 1929 0.235926 GCAGCGGAGAACAGAAACAC 59.764 55.000 0.00 0.00 0.00 3.32
1831 1956 1.276138 AGTCATGATCGAACACCTGCA 59.724 47.619 0.00 0.00 0.00 4.41
1832 1957 2.015736 AGTCATGATCGAACACCTGC 57.984 50.000 0.00 0.00 0.00 4.85
1850 1981 2.223089 TGCATTTCGCGTGATCATGAAG 60.223 45.455 19.30 11.25 46.97 3.02
1854 1985 0.378257 GGTGCATTTCGCGTGATCAT 59.622 50.000 5.77 0.00 46.97 2.45
1871 2002 0.395311 CTGGATGGCTGCAGAATGGT 60.395 55.000 20.43 0.00 43.06 3.55
2039 2170 1.379977 CCACTGGAGCTCGAGGGTA 60.380 63.158 26.86 0.69 0.00 3.69
2297 2428 3.853487 ATCATGAGCTCCGCCGCA 61.853 61.111 12.15 0.00 0.00 5.69
2307 2438 1.667724 GAGCGGAACAACCATCATGAG 59.332 52.381 0.09 0.00 38.90 2.90
2356 2487 6.148315 TGCTGCATTGATCGGATCTTTATTAG 59.852 38.462 18.16 10.60 0.00 1.73
2359 2490 4.392047 TGCTGCATTGATCGGATCTTTAT 58.608 39.130 18.16 7.15 0.00 1.40
2382 2514 2.628696 CGCATGGAAGGTGCTGCAA 61.629 57.895 2.77 0.00 40.37 4.08
2383 2515 3.057548 CGCATGGAAGGTGCTGCA 61.058 61.111 0.00 0.00 40.37 4.41
2416 2549 2.237392 AGAATTCTCGTGAGGAAAGGGG 59.763 50.000 0.88 0.00 0.00 4.79
2431 2564 8.882415 AAATGCATGGATGATTTACAGAATTC 57.118 30.769 0.00 0.00 0.00 2.17
2434 2567 9.970395 GATAAAATGCATGGATGATTTACAGAA 57.030 29.630 0.00 0.00 0.00 3.02
2460 2596 2.256174 CCGATCACTGCAGCAAAAATG 58.744 47.619 15.27 3.19 0.00 2.32
2462 2598 0.039256 GCCGATCACTGCAGCAAAAA 60.039 50.000 15.27 0.00 0.00 1.94
2550 2688 3.771160 CCGGTCCAGGAGTTCCCG 61.771 72.222 8.93 8.93 40.87 5.14
2624 2762 8.634335 TGAAATTGGAAAGAACATACTGATCA 57.366 30.769 0.00 0.00 0.00 2.92
2725 2863 5.049612 CAGGTTAGCAATGCTGTCAGATATG 60.050 44.000 19.25 2.25 40.10 1.78
2735 2873 1.271543 TGCAGTCAGGTTAGCAATGCT 60.272 47.619 13.92 13.92 43.41 3.79
2736 2874 1.167851 TGCAGTCAGGTTAGCAATGC 58.832 50.000 0.00 0.00 33.48 3.56
2746 2884 1.144565 CGCTCGAGATTGCAGTCAGG 61.145 60.000 18.75 2.74 0.00 3.86
2780 2918 3.515104 TGCAGATCTGACATCAGTTGGTA 59.485 43.478 27.04 0.00 44.12 3.25
2783 2921 3.242772 GCATGCAGATCTGACATCAGTTG 60.243 47.826 27.04 16.80 44.12 3.16
2836 2976 1.927710 GCTGCAACAAAGCCTTTCTCG 60.928 52.381 0.00 0.00 34.45 4.04
2904 3044 2.949644 CAGAGATGCCAAATGATGCAGA 59.050 45.455 0.00 0.00 41.46 4.26
2941 3081 6.964741 TCATTTTGCGCAAATAATCATGTT 57.035 29.167 33.94 9.54 32.90 2.71
3200 3349 5.162794 GCAACATGTATGTCAATTGAGCAA 58.837 37.500 8.80 0.00 40.80 3.91
3374 3539 9.233232 ACAAAAATAGAACGCTCAACTAAAAAG 57.767 29.630 0.00 0.00 0.00 2.27
3375 3540 9.015577 CACAAAAATAGAACGCTCAACTAAAAA 57.984 29.630 0.00 0.00 0.00 1.94
3388 3553 6.908825 TGTATCACAGGCACAAAAATAGAAC 58.091 36.000 0.00 0.00 0.00 3.01
3400 3565 5.070313 TGCAAGACTATATGTATCACAGGCA 59.930 40.000 0.00 0.00 0.00 4.75
3401 3566 5.541845 TGCAAGACTATATGTATCACAGGC 58.458 41.667 0.00 0.00 0.00 4.85
3403 3568 5.344396 CGCTGCAAGACTATATGTATCACAG 59.656 44.000 0.00 0.00 34.07 3.66
3405 3570 5.461526 TCGCTGCAAGACTATATGTATCAC 58.538 41.667 0.00 0.00 34.07 3.06
3407 3572 6.808704 TCATTCGCTGCAAGACTATATGTATC 59.191 38.462 0.00 0.00 34.07 2.24
3408 3573 6.587990 GTCATTCGCTGCAAGACTATATGTAT 59.412 38.462 0.00 0.00 34.07 2.29
3410 3575 4.747108 GTCATTCGCTGCAAGACTATATGT 59.253 41.667 0.00 0.00 34.07 2.29
3488 3657 1.466167 CTCATGTTCTGTTCCTTGCGG 59.534 52.381 0.00 0.00 0.00 5.69
3506 3675 6.648725 GCTTCTCACTATCCCATAAACATCTC 59.351 42.308 0.00 0.00 0.00 2.75
3514 3683 3.511540 CGATGGCTTCTCACTATCCCATA 59.488 47.826 0.00 0.00 33.50 2.74
3540 3709 4.202151 GCCCTCATTCTCACACTTTTGTTT 60.202 41.667 0.00 0.00 31.66 2.83
3541 3710 3.319122 GCCCTCATTCTCACACTTTTGTT 59.681 43.478 0.00 0.00 31.66 2.83
3546 3715 2.719739 CATGCCCTCATTCTCACACTT 58.280 47.619 0.00 0.00 0.00 3.16
3562 3736 2.880268 TGTGCCAGTTAGATATGCATGC 59.120 45.455 11.82 11.82 34.04 4.06
3582 3756 5.047092 AGGGAAATAAGCCAACATTGTCTTG 60.047 40.000 0.00 0.00 0.00 3.02
3702 7070 1.164411 AAATGGAATCAAGCGCGACA 58.836 45.000 12.10 0.00 0.00 4.35
3744 7112 8.044060 TGTGATTGCCTCTCTAACAAATTTAG 57.956 34.615 0.00 0.00 0.00 1.85
3790 9296 2.289320 GCCTCTAGCATCCACATCGATT 60.289 50.000 0.00 0.00 42.97 3.34
3844 9350 9.847706 GATGCTCTAAATATGTCTTCGAATAGA 57.152 33.333 0.00 0.00 0.00 1.98
3845 9351 9.853555 AGATGCTCTAAATATGTCTTCGAATAG 57.146 33.333 0.00 0.00 0.00 1.73
3846 9352 9.847706 GAGATGCTCTAAATATGTCTTCGAATA 57.152 33.333 0.00 0.00 0.00 1.75
3847 9353 7.816995 GGAGATGCTCTAAATATGTCTTCGAAT 59.183 37.037 0.00 0.00 0.00 3.34
3848 9354 7.148641 GGAGATGCTCTAAATATGTCTTCGAA 58.851 38.462 0.00 0.00 0.00 3.71
3849 9355 6.265422 TGGAGATGCTCTAAATATGTCTTCGA 59.735 38.462 0.00 0.00 0.00 3.71
3850 9356 6.450545 TGGAGATGCTCTAAATATGTCTTCG 58.549 40.000 0.00 0.00 0.00 3.79
3851 9357 7.712639 TGTTGGAGATGCTCTAAATATGTCTTC 59.287 37.037 0.00 0.00 33.06 2.87
3852 9358 7.568349 TGTTGGAGATGCTCTAAATATGTCTT 58.432 34.615 0.00 0.00 33.06 3.01
3853 9359 7.129457 TGTTGGAGATGCTCTAAATATGTCT 57.871 36.000 0.00 0.00 33.06 3.41
3854 9360 6.073331 GCTGTTGGAGATGCTCTAAATATGTC 60.073 42.308 0.00 0.00 33.06 3.06
3855 9361 5.762218 GCTGTTGGAGATGCTCTAAATATGT 59.238 40.000 0.00 0.00 33.06 2.29
3856 9362 5.180868 GGCTGTTGGAGATGCTCTAAATATG 59.819 44.000 0.00 0.00 33.06 1.78
3859 9365 3.549794 GGCTGTTGGAGATGCTCTAAAT 58.450 45.455 0.00 0.00 33.06 1.40
4047 9575 6.645700 TGTTTGTGTTTGATCTTTTTGCTC 57.354 33.333 0.00 0.00 0.00 4.26
4144 9678 7.515643 ACTATTTGTTGTGTTTATCGCACTAC 58.484 34.615 0.00 0.00 40.89 2.73
4211 9748 1.077787 GGGCATGGAATGGACGACA 60.078 57.895 0.00 0.00 46.86 4.35
4232 9769 3.201708 CAGAAGGATCTCATTGGGGAGTT 59.798 47.826 0.00 0.00 36.30 3.01
4238 9775 5.926663 TGATCTTCAGAAGGATCTCATTGG 58.073 41.667 10.42 0.00 39.09 3.16
4281 9818 4.025360 TGTTGCCTTCTATCATGCCATTT 58.975 39.130 0.00 0.00 0.00 2.32
4625 10163 6.129874 ACTATGGCTATTATCTAGCGGATGA 58.870 40.000 5.66 0.00 41.24 2.92
4720 10258 2.631160 TCAATGTTGTCAACCGGTCT 57.369 45.000 8.04 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.