Multiple sequence alignment - TraesCS5D01G245100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G245100 chr5D 100.000 2279 0 0 1 2279 353657204 353654926 0.000000e+00 4209
1 TraesCS5D01G245100 chr5D 90.705 312 12 7 391 686 353664483 353664173 1.270000e-107 399
2 TraesCS5D01G245100 chr5B 92.722 1855 62 31 393 2217 417806597 417804786 0.000000e+00 2610
3 TraesCS5D01G245100 chr5A 92.017 1879 74 32 424 2279 454706224 454704399 0.000000e+00 2569
4 TraesCS5D01G245100 chr4B 78.067 1190 219 34 587 1761 568737241 568736079 0.000000e+00 713
5 TraesCS5D01G245100 chr6B 80.464 819 148 10 953 1762 614312865 614312050 1.160000e-172 616
6 TraesCS5D01G245100 chr6B 80.220 819 150 10 953 1762 614438175 614437360 2.500000e-169 604
7 TraesCS5D01G245100 chr6B 80.220 819 150 10 953 1762 614583233 614582418 2.500000e-169 604
8 TraesCS5D01G245100 chr6B 80.122 820 149 10 953 1762 636584770 636585585 1.170000e-167 599
9 TraesCS5D01G245100 chr6A 80.265 831 149 13 942 1762 554825749 554824924 1.500000e-171 612
10 TraesCS5D01G245100 chr6A 80.144 831 150 11 942 1762 564975976 564975151 6.960000e-170 606
11 TraesCS5D01G245100 chr3D 94.000 400 13 1 1 389 61905731 61905332 1.510000e-166 595
12 TraesCS5D01G245100 chr3D 88.115 244 22 3 1 237 445274992 445275235 1.330000e-72 283
13 TraesCS5D01G245100 chr2A 93.165 395 16 5 4 387 748177923 748177529 9.130000e-159 569
14 TraesCS5D01G245100 chr2A 91.457 398 12 5 1 387 748130854 748130468 5.580000e-146 527
15 TraesCS5D01G245100 chr2A 90.704 398 26 5 1 387 748196092 748195695 9.330000e-144 520
16 TraesCS5D01G245100 chr2D 92.211 398 19 2 1 386 623778452 623778849 9.200000e-154 553
17 TraesCS5D01G245100 chr3A 90.977 399 25 5 1 388 502831871 502831473 5.580000e-146 527
18 TraesCS5D01G245100 chr7A 90.244 410 18 6 1 389 471815487 471815079 1.210000e-142 516
19 TraesCS5D01G245100 chr7A 77.121 389 75 8 11 387 310330236 310329850 1.770000e-51 213
20 TraesCS5D01G245100 chr4A 87.025 316 28 7 91 393 567695453 567695138 6.030000e-91 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G245100 chr5D 353654926 353657204 2278 True 4209 4209 100.000 1 2279 1 chr5D.!!$R1 2278
1 TraesCS5D01G245100 chr5B 417804786 417806597 1811 True 2610 2610 92.722 393 2217 1 chr5B.!!$R1 1824
2 TraesCS5D01G245100 chr5A 454704399 454706224 1825 True 2569 2569 92.017 424 2279 1 chr5A.!!$R1 1855
3 TraesCS5D01G245100 chr4B 568736079 568737241 1162 True 713 713 78.067 587 1761 1 chr4B.!!$R1 1174
4 TraesCS5D01G245100 chr6B 614312050 614312865 815 True 616 616 80.464 953 1762 1 chr6B.!!$R1 809
5 TraesCS5D01G245100 chr6B 614437360 614438175 815 True 604 604 80.220 953 1762 1 chr6B.!!$R2 809
6 TraesCS5D01G245100 chr6B 614582418 614583233 815 True 604 604 80.220 953 1762 1 chr6B.!!$R3 809
7 TraesCS5D01G245100 chr6B 636584770 636585585 815 False 599 599 80.122 953 1762 1 chr6B.!!$F1 809
8 TraesCS5D01G245100 chr6A 554824924 554825749 825 True 612 612 80.265 942 1762 1 chr6A.!!$R1 820
9 TraesCS5D01G245100 chr6A 564975151 564975976 825 True 606 606 80.144 942 1762 1 chr6A.!!$R2 820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.031585 TTCGACTCCTCCGTGTTGTG 59.968 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2010 0.468226 ACTCGTGGAACAAGCAAGGA 59.532 50.0 0.0 0.0 44.16 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.709386 ACAGATACATCTTCAACTGTAATGAC 57.291 34.615 0.00 0.00 36.94 3.06
28 29 7.489435 ACAGATACATCTTCAACTGTAATGACG 59.511 37.037 0.00 0.00 36.94 4.35
29 30 4.928661 ACATCTTCAACTGTAATGACGC 57.071 40.909 0.00 0.00 0.00 5.19
30 31 3.684788 ACATCTTCAACTGTAATGACGCC 59.315 43.478 0.00 0.00 0.00 5.68
31 32 3.678056 TCTTCAACTGTAATGACGCCT 57.322 42.857 0.00 0.00 0.00 5.52
32 33 4.002906 TCTTCAACTGTAATGACGCCTT 57.997 40.909 0.00 0.00 0.00 4.35
33 34 5.142061 TCTTCAACTGTAATGACGCCTTA 57.858 39.130 0.00 0.00 0.00 2.69
34 35 5.168569 TCTTCAACTGTAATGACGCCTTAG 58.831 41.667 0.00 0.00 0.00 2.18
35 36 4.794278 TCAACTGTAATGACGCCTTAGA 57.206 40.909 0.00 0.00 0.00 2.10
36 37 5.142061 TCAACTGTAATGACGCCTTAGAA 57.858 39.130 0.00 0.00 0.00 2.10
37 38 5.168569 TCAACTGTAATGACGCCTTAGAAG 58.831 41.667 0.00 0.00 0.00 2.85
38 39 3.522553 ACTGTAATGACGCCTTAGAAGC 58.477 45.455 0.00 0.00 0.00 3.86
39 40 3.056107 ACTGTAATGACGCCTTAGAAGCA 60.056 43.478 0.00 0.00 0.00 3.91
40 41 3.521560 TGTAATGACGCCTTAGAAGCAG 58.478 45.455 0.00 0.00 0.00 4.24
41 42 3.194755 TGTAATGACGCCTTAGAAGCAGA 59.805 43.478 0.00 0.00 0.00 4.26
42 43 2.593346 ATGACGCCTTAGAAGCAGAG 57.407 50.000 0.00 0.00 0.00 3.35
43 44 1.545841 TGACGCCTTAGAAGCAGAGA 58.454 50.000 0.00 0.00 0.00 3.10
44 45 2.103373 TGACGCCTTAGAAGCAGAGAT 58.897 47.619 0.00 0.00 0.00 2.75
45 46 2.099921 TGACGCCTTAGAAGCAGAGATC 59.900 50.000 0.00 0.00 0.00 2.75
46 47 1.410882 ACGCCTTAGAAGCAGAGATCC 59.589 52.381 0.00 0.00 0.00 3.36
47 48 1.601663 CGCCTTAGAAGCAGAGATCCG 60.602 57.143 0.00 0.00 0.00 4.18
48 49 1.410882 GCCTTAGAAGCAGAGATCCGT 59.589 52.381 0.00 0.00 0.00 4.69
49 50 2.801342 GCCTTAGAAGCAGAGATCCGTG 60.801 54.545 0.00 0.00 0.00 4.94
50 51 2.468831 CTTAGAAGCAGAGATCCGTGC 58.531 52.381 8.54 8.54 40.17 5.34
51 52 0.382158 TAGAAGCAGAGATCCGTGCG 59.618 55.000 10.42 0.00 44.78 5.34
52 53 1.153745 GAAGCAGAGATCCGTGCGT 60.154 57.895 10.42 7.91 44.78 5.24
53 54 0.737715 GAAGCAGAGATCCGTGCGTT 60.738 55.000 10.42 6.36 44.78 4.84
54 55 1.016130 AAGCAGAGATCCGTGCGTTG 61.016 55.000 10.42 0.00 44.78 4.10
55 56 1.446099 GCAGAGATCCGTGCGTTGA 60.446 57.895 1.36 0.00 0.00 3.18
56 57 0.807667 GCAGAGATCCGTGCGTTGAT 60.808 55.000 1.36 0.00 0.00 2.57
57 58 0.926155 CAGAGATCCGTGCGTTGATG 59.074 55.000 0.00 0.00 0.00 3.07
58 59 0.807667 AGAGATCCGTGCGTTGATGC 60.808 55.000 0.00 0.00 0.00 3.91
59 60 1.079197 AGATCCGTGCGTTGATGCA 60.079 52.632 0.00 0.00 43.95 3.96
67 68 1.093972 TGCGTTGATGCAAGGTATGG 58.906 50.000 0.00 0.00 43.02 2.74
68 69 0.248621 GCGTTGATGCAAGGTATGGC 60.249 55.000 0.00 0.00 32.67 4.40
69 70 0.381801 CGTTGATGCAAGGTATGGCC 59.618 55.000 0.00 0.00 37.58 5.36
80 81 2.656947 GGTATGGCCTTGGCTATTCA 57.343 50.000 15.39 3.46 0.00 2.57
81 82 2.508526 GGTATGGCCTTGGCTATTCAG 58.491 52.381 15.39 0.00 0.00 3.02
94 95 1.929836 CTATTCAGCACTCGGACAAGC 59.070 52.381 0.00 0.00 0.00 4.01
95 96 0.674895 ATTCAGCACTCGGACAAGCC 60.675 55.000 0.00 0.00 0.00 4.35
96 97 1.758440 TTCAGCACTCGGACAAGCCT 61.758 55.000 0.00 0.00 0.00 4.58
97 98 2.031516 CAGCACTCGGACAAGCCTG 61.032 63.158 0.00 0.00 0.00 4.85
98 99 2.031163 GCACTCGGACAAGCCTGT 59.969 61.111 0.00 0.00 38.98 4.00
108 109 2.363306 ACAAGCCTGTCATTGTCCAA 57.637 45.000 0.00 0.00 34.62 3.53
109 110 2.880443 ACAAGCCTGTCATTGTCCAAT 58.120 42.857 0.00 0.00 34.62 3.16
110 111 2.821969 ACAAGCCTGTCATTGTCCAATC 59.178 45.455 0.00 0.00 34.62 2.67
111 112 2.821378 CAAGCCTGTCATTGTCCAATCA 59.179 45.455 0.00 0.00 0.00 2.57
112 113 2.719739 AGCCTGTCATTGTCCAATCAG 58.280 47.619 3.08 3.08 0.00 2.90
113 114 2.306805 AGCCTGTCATTGTCCAATCAGA 59.693 45.455 9.21 0.00 29.22 3.27
114 115 3.053842 AGCCTGTCATTGTCCAATCAGAT 60.054 43.478 9.21 0.00 29.22 2.90
115 116 3.698040 GCCTGTCATTGTCCAATCAGATT 59.302 43.478 9.21 0.00 29.22 2.40
116 117 4.201990 GCCTGTCATTGTCCAATCAGATTC 60.202 45.833 9.21 0.00 29.22 2.52
117 118 5.191426 CCTGTCATTGTCCAATCAGATTCT 58.809 41.667 9.21 0.00 29.22 2.40
118 119 6.351711 CCTGTCATTGTCCAATCAGATTCTA 58.648 40.000 9.21 0.00 29.22 2.10
119 120 6.996879 CCTGTCATTGTCCAATCAGATTCTAT 59.003 38.462 9.21 0.00 29.22 1.98
120 121 8.152898 CCTGTCATTGTCCAATCAGATTCTATA 58.847 37.037 9.21 0.00 29.22 1.31
121 122 9.551734 CTGTCATTGTCCAATCAGATTCTATAA 57.448 33.333 0.00 0.00 29.22 0.98
122 123 9.904198 TGTCATTGTCCAATCAGATTCTATAAA 57.096 29.630 0.00 0.00 0.00 1.40
125 126 9.622004 CATTGTCCAATCAGATTCTATAAATGC 57.378 33.333 0.00 0.00 0.00 3.56
126 127 7.750229 TGTCCAATCAGATTCTATAAATGCC 57.250 36.000 0.00 0.00 0.00 4.40
127 128 6.716628 TGTCCAATCAGATTCTATAAATGCCC 59.283 38.462 0.00 0.00 0.00 5.36
128 129 6.944862 GTCCAATCAGATTCTATAAATGCCCT 59.055 38.462 0.00 0.00 0.00 5.19
129 130 6.944290 TCCAATCAGATTCTATAAATGCCCTG 59.056 38.462 0.00 0.00 0.00 4.45
130 131 6.152323 CCAATCAGATTCTATAAATGCCCTGG 59.848 42.308 0.00 0.00 0.00 4.45
131 132 4.655963 TCAGATTCTATAAATGCCCTGGC 58.344 43.478 0.00 0.00 42.35 4.85
132 133 3.760684 CAGATTCTATAAATGCCCTGGCC 59.239 47.826 5.57 0.00 41.09 5.36
133 134 3.398967 AGATTCTATAAATGCCCTGGCCA 59.601 43.478 4.71 4.71 41.09 5.36
134 135 3.901570 TTCTATAAATGCCCTGGCCAT 57.098 42.857 5.51 0.00 41.09 4.40
135 136 3.901570 TCTATAAATGCCCTGGCCATT 57.098 42.857 5.51 0.00 41.09 3.16
136 137 3.766545 TCTATAAATGCCCTGGCCATTC 58.233 45.455 5.51 0.00 41.09 2.67
137 138 2.781403 ATAAATGCCCTGGCCATTCT 57.219 45.000 5.51 0.00 41.09 2.40
138 139 2.548464 TAAATGCCCTGGCCATTCTT 57.452 45.000 5.51 0.00 41.09 2.52
139 140 0.906775 AAATGCCCTGGCCATTCTTG 59.093 50.000 5.51 0.00 41.09 3.02
140 141 0.979187 AATGCCCTGGCCATTCTTGG 60.979 55.000 5.51 2.71 46.66 3.61
141 142 1.877672 ATGCCCTGGCCATTCTTGGA 61.878 55.000 5.51 0.00 46.92 3.53
142 143 1.755783 GCCCTGGCCATTCTTGGAG 60.756 63.158 5.51 0.00 46.92 3.86
143 144 1.076485 CCCTGGCCATTCTTGGAGG 60.076 63.158 5.51 0.00 46.92 4.30
144 145 1.574526 CCCTGGCCATTCTTGGAGGA 61.575 60.000 5.51 0.00 46.92 3.71
145 146 0.332632 CCTGGCCATTCTTGGAGGAA 59.667 55.000 5.51 0.00 46.92 3.36
146 147 1.272648 CCTGGCCATTCTTGGAGGAAA 60.273 52.381 5.51 0.00 46.92 3.13
147 148 1.821136 CTGGCCATTCTTGGAGGAAAC 59.179 52.381 5.51 0.00 46.92 2.78
148 149 1.146774 TGGCCATTCTTGGAGGAAACA 59.853 47.619 0.00 0.00 46.92 2.83
149 150 1.546029 GGCCATTCTTGGAGGAAACAC 59.454 52.381 0.00 0.00 46.92 3.32
150 151 2.519013 GCCATTCTTGGAGGAAACACT 58.481 47.619 0.00 0.00 46.92 3.55
151 152 2.893489 GCCATTCTTGGAGGAAACACTT 59.107 45.455 0.00 0.00 46.92 3.16
152 153 3.321968 GCCATTCTTGGAGGAAACACTTT 59.678 43.478 0.00 0.00 46.92 2.66
153 154 4.797275 GCCATTCTTGGAGGAAACACTTTG 60.797 45.833 0.00 0.00 46.92 2.77
154 155 4.262164 CCATTCTTGGAGGAAACACTTTGG 60.262 45.833 0.00 0.00 46.92 3.28
155 156 3.662759 TCTTGGAGGAAACACTTTGGT 57.337 42.857 0.00 0.00 0.00 3.67
156 157 3.976015 TCTTGGAGGAAACACTTTGGTT 58.024 40.909 0.00 0.00 0.00 3.67
157 158 5.118729 TCTTGGAGGAAACACTTTGGTTA 57.881 39.130 0.00 0.00 0.00 2.85
158 159 5.130350 TCTTGGAGGAAACACTTTGGTTAG 58.870 41.667 0.00 0.00 0.00 2.34
159 160 4.781775 TGGAGGAAACACTTTGGTTAGA 57.218 40.909 0.00 0.00 0.00 2.10
160 161 5.319043 TGGAGGAAACACTTTGGTTAGAT 57.681 39.130 0.00 0.00 0.00 1.98
161 162 5.313712 TGGAGGAAACACTTTGGTTAGATC 58.686 41.667 0.00 0.00 0.00 2.75
162 163 4.392138 GGAGGAAACACTTTGGTTAGATCG 59.608 45.833 0.00 0.00 0.00 3.69
163 164 4.324267 AGGAAACACTTTGGTTAGATCGG 58.676 43.478 0.00 0.00 0.00 4.18
164 165 3.119955 GGAAACACTTTGGTTAGATCGGC 60.120 47.826 0.00 0.00 0.00 5.54
165 166 2.109425 ACACTTTGGTTAGATCGGCC 57.891 50.000 0.00 0.00 0.00 6.13
166 167 1.628846 ACACTTTGGTTAGATCGGCCT 59.371 47.619 0.00 0.00 0.00 5.19
167 168 2.835764 ACACTTTGGTTAGATCGGCCTA 59.164 45.455 0.00 0.00 0.00 3.93
168 169 3.195661 CACTTTGGTTAGATCGGCCTAC 58.804 50.000 0.00 0.00 0.00 3.18
169 170 2.159142 ACTTTGGTTAGATCGGCCTACG 60.159 50.000 0.00 0.00 46.11 3.51
170 171 0.748450 TTGGTTAGATCGGCCTACGG 59.252 55.000 0.00 0.00 44.45 4.02
171 172 0.396139 TGGTTAGATCGGCCTACGGT 60.396 55.000 0.00 0.00 44.45 4.83
176 177 4.029472 ATCGGCCTACGGTCACTT 57.971 55.556 0.00 0.00 44.45 3.16
177 178 3.196040 ATCGGCCTACGGTCACTTA 57.804 52.632 0.00 0.00 44.45 2.24
178 179 1.030457 ATCGGCCTACGGTCACTTAG 58.970 55.000 0.00 0.00 44.45 2.18
179 180 0.035152 TCGGCCTACGGTCACTTAGA 60.035 55.000 0.00 0.00 44.45 2.10
180 181 1.030457 CGGCCTACGGTCACTTAGAT 58.970 55.000 0.00 0.00 39.42 1.98
181 182 1.269102 CGGCCTACGGTCACTTAGATG 60.269 57.143 0.00 0.00 39.42 2.90
182 183 1.538419 GGCCTACGGTCACTTAGATGC 60.538 57.143 0.00 0.00 0.00 3.91
183 184 1.409427 GCCTACGGTCACTTAGATGCT 59.591 52.381 0.00 0.00 0.00 3.79
184 185 2.799917 GCCTACGGTCACTTAGATGCTG 60.800 54.545 0.00 0.00 0.00 4.41
185 186 2.688446 CCTACGGTCACTTAGATGCTGA 59.312 50.000 0.00 0.00 0.00 4.26
186 187 2.949451 ACGGTCACTTAGATGCTGAG 57.051 50.000 0.00 0.00 0.00 3.35
187 188 2.447443 ACGGTCACTTAGATGCTGAGA 58.553 47.619 0.00 0.00 0.00 3.27
188 189 3.027412 ACGGTCACTTAGATGCTGAGAT 58.973 45.455 0.00 0.00 0.00 2.75
189 190 3.449018 ACGGTCACTTAGATGCTGAGATT 59.551 43.478 0.00 0.00 0.00 2.40
190 191 4.645136 ACGGTCACTTAGATGCTGAGATTA 59.355 41.667 0.00 0.00 0.00 1.75
191 192 5.127194 ACGGTCACTTAGATGCTGAGATTAA 59.873 40.000 0.00 0.00 0.00 1.40
192 193 6.042777 CGGTCACTTAGATGCTGAGATTAAA 58.957 40.000 0.00 0.00 0.00 1.52
193 194 6.199908 CGGTCACTTAGATGCTGAGATTAAAG 59.800 42.308 0.00 0.00 0.00 1.85
194 195 6.018343 GGTCACTTAGATGCTGAGATTAAAGC 60.018 42.308 0.00 0.00 39.96 3.51
195 196 6.760770 GTCACTTAGATGCTGAGATTAAAGCT 59.239 38.462 0.00 0.00 40.21 3.74
196 197 6.983307 TCACTTAGATGCTGAGATTAAAGCTC 59.017 38.462 0.00 0.94 40.21 4.09
197 198 6.985645 CACTTAGATGCTGAGATTAAAGCTCT 59.014 38.462 9.32 6.99 40.21 4.09
198 199 7.495279 CACTTAGATGCTGAGATTAAAGCTCTT 59.505 37.037 9.32 0.00 40.21 2.85
199 200 8.700051 ACTTAGATGCTGAGATTAAAGCTCTTA 58.300 33.333 9.32 0.00 40.21 2.10
200 201 9.709495 CTTAGATGCTGAGATTAAAGCTCTTAT 57.291 33.333 9.32 3.09 40.21 1.73
201 202 7.966246 AGATGCTGAGATTAAAGCTCTTATG 57.034 36.000 9.32 1.35 40.21 1.90
202 203 6.935771 AGATGCTGAGATTAAAGCTCTTATGG 59.064 38.462 9.32 0.00 40.21 2.74
203 204 5.994250 TGCTGAGATTAAAGCTCTTATGGT 58.006 37.500 9.32 0.00 40.21 3.55
204 205 6.418101 TGCTGAGATTAAAGCTCTTATGGTT 58.582 36.000 9.32 0.00 40.21 3.67
205 206 6.317140 TGCTGAGATTAAAGCTCTTATGGTTG 59.683 38.462 9.32 0.00 40.21 3.77
206 207 6.540189 GCTGAGATTAAAGCTCTTATGGTTGA 59.460 38.462 9.32 0.00 36.47 3.18
207 208 7.228308 GCTGAGATTAAAGCTCTTATGGTTGAT 59.772 37.037 9.32 0.00 36.47 2.57
208 209 8.668510 TGAGATTAAAGCTCTTATGGTTGATC 57.331 34.615 9.32 0.00 33.57 2.92
209 210 7.439356 TGAGATTAAAGCTCTTATGGTTGATCG 59.561 37.037 9.32 0.00 33.57 3.69
210 211 7.500992 AGATTAAAGCTCTTATGGTTGATCGA 58.499 34.615 0.00 0.00 31.81 3.59
211 212 7.655328 AGATTAAAGCTCTTATGGTTGATCGAG 59.345 37.037 0.00 0.00 31.81 4.04
212 213 5.344743 AAAGCTCTTATGGTTGATCGAGA 57.655 39.130 0.00 0.00 0.00 4.04
213 214 4.582701 AGCTCTTATGGTTGATCGAGAG 57.417 45.455 0.00 0.00 35.05 3.20
214 215 3.957497 AGCTCTTATGGTTGATCGAGAGT 59.043 43.478 0.00 0.00 34.57 3.24
215 216 4.404073 AGCTCTTATGGTTGATCGAGAGTT 59.596 41.667 0.00 0.00 34.57 3.01
216 217 5.105146 AGCTCTTATGGTTGATCGAGAGTTT 60.105 40.000 0.00 0.00 34.57 2.66
217 218 5.006165 GCTCTTATGGTTGATCGAGAGTTTG 59.994 44.000 0.00 0.00 34.57 2.93
218 219 6.037786 TCTTATGGTTGATCGAGAGTTTGT 57.962 37.500 0.00 0.00 0.00 2.83
219 220 6.464222 TCTTATGGTTGATCGAGAGTTTGTT 58.536 36.000 0.00 0.00 0.00 2.83
220 221 6.934645 TCTTATGGTTGATCGAGAGTTTGTTT 59.065 34.615 0.00 0.00 0.00 2.83
221 222 5.613358 ATGGTTGATCGAGAGTTTGTTTC 57.387 39.130 0.00 0.00 0.00 2.78
222 223 4.447290 TGGTTGATCGAGAGTTTGTTTCA 58.553 39.130 0.00 0.00 0.00 2.69
223 224 4.272504 TGGTTGATCGAGAGTTTGTTTCAC 59.727 41.667 0.00 0.00 0.00 3.18
224 225 4.511826 GGTTGATCGAGAGTTTGTTTCACT 59.488 41.667 0.00 0.00 0.00 3.41
225 226 5.007724 GGTTGATCGAGAGTTTGTTTCACTT 59.992 40.000 0.00 0.00 0.00 3.16
226 227 6.202188 GGTTGATCGAGAGTTTGTTTCACTTA 59.798 38.462 0.00 0.00 0.00 2.24
227 228 7.254658 GGTTGATCGAGAGTTTGTTTCACTTAA 60.255 37.037 0.00 0.00 0.00 1.85
228 229 7.408132 TGATCGAGAGTTTGTTTCACTTAAG 57.592 36.000 0.00 0.00 0.00 1.85
229 230 7.207383 TGATCGAGAGTTTGTTTCACTTAAGA 58.793 34.615 10.09 0.00 0.00 2.10
230 231 7.872993 TGATCGAGAGTTTGTTTCACTTAAGAT 59.127 33.333 10.09 0.00 0.00 2.40
231 232 8.608844 ATCGAGAGTTTGTTTCACTTAAGATT 57.391 30.769 10.09 0.00 0.00 2.40
232 233 9.706691 ATCGAGAGTTTGTTTCACTTAAGATTA 57.293 29.630 10.09 0.00 0.00 1.75
233 234 8.975439 TCGAGAGTTTGTTTCACTTAAGATTAC 58.025 33.333 10.09 2.55 0.00 1.89
234 235 8.979574 CGAGAGTTTGTTTCACTTAAGATTACT 58.020 33.333 10.09 1.16 0.00 2.24
257 258 8.079211 ACTAGAGATCAAAATAAGGTAGCACA 57.921 34.615 0.00 0.00 0.00 4.57
258 259 8.709308 ACTAGAGATCAAAATAAGGTAGCACAT 58.291 33.333 0.00 0.00 0.00 3.21
259 260 9.202273 CTAGAGATCAAAATAAGGTAGCACATC 57.798 37.037 0.00 0.00 0.00 3.06
260 261 7.568349 AGAGATCAAAATAAGGTAGCACATCA 58.432 34.615 0.00 0.00 0.00 3.07
261 262 8.049117 AGAGATCAAAATAAGGTAGCACATCAA 58.951 33.333 0.00 0.00 0.00 2.57
262 263 7.989826 AGATCAAAATAAGGTAGCACATCAAC 58.010 34.615 0.00 0.00 0.00 3.18
263 264 7.831193 AGATCAAAATAAGGTAGCACATCAACT 59.169 33.333 0.00 0.00 0.00 3.16
264 265 7.377766 TCAAAATAAGGTAGCACATCAACTC 57.622 36.000 0.00 0.00 0.00 3.01
265 266 6.092122 TCAAAATAAGGTAGCACATCAACTCG 59.908 38.462 0.00 0.00 0.00 4.18
266 267 1.726853 AAGGTAGCACATCAACTCGC 58.273 50.000 0.00 0.00 0.00 5.03
267 268 0.898320 AGGTAGCACATCAACTCGCT 59.102 50.000 0.00 0.00 38.51 4.93
268 269 1.276421 AGGTAGCACATCAACTCGCTT 59.724 47.619 0.00 0.00 35.93 4.68
269 270 2.076863 GGTAGCACATCAACTCGCTTT 58.923 47.619 0.00 0.00 35.93 3.51
270 271 2.484264 GGTAGCACATCAACTCGCTTTT 59.516 45.455 0.00 0.00 35.93 2.27
271 272 3.058224 GGTAGCACATCAACTCGCTTTTT 60.058 43.478 0.00 0.00 35.93 1.94
272 273 4.153475 GGTAGCACATCAACTCGCTTTTTA 59.847 41.667 0.00 0.00 35.93 1.52
273 274 5.163754 GGTAGCACATCAACTCGCTTTTTAT 60.164 40.000 0.00 0.00 35.93 1.40
274 275 6.036735 GGTAGCACATCAACTCGCTTTTTATA 59.963 38.462 0.00 0.00 35.93 0.98
275 276 6.111768 AGCACATCAACTCGCTTTTTATAG 57.888 37.500 0.00 0.00 0.00 1.31
276 277 4.730521 GCACATCAACTCGCTTTTTATAGC 59.269 41.667 0.00 0.00 37.80 2.97
277 278 5.447818 GCACATCAACTCGCTTTTTATAGCT 60.448 40.000 0.00 0.00 39.03 3.32
278 279 5.961843 CACATCAACTCGCTTTTTATAGCTG 59.038 40.000 0.00 0.00 39.03 4.24
279 280 5.643777 ACATCAACTCGCTTTTTATAGCTGT 59.356 36.000 0.00 0.00 39.03 4.40
280 281 6.816640 ACATCAACTCGCTTTTTATAGCTGTA 59.183 34.615 0.00 0.00 39.03 2.74
281 282 6.642683 TCAACTCGCTTTTTATAGCTGTAC 57.357 37.500 0.00 0.00 39.03 2.90
282 283 6.395629 TCAACTCGCTTTTTATAGCTGTACT 58.604 36.000 0.00 0.00 39.03 2.73
283 284 6.310467 TCAACTCGCTTTTTATAGCTGTACTG 59.690 38.462 0.00 0.00 39.03 2.74
284 285 5.962433 ACTCGCTTTTTATAGCTGTACTGA 58.038 37.500 3.61 0.00 39.03 3.41
285 286 6.037098 ACTCGCTTTTTATAGCTGTACTGAG 58.963 40.000 3.61 0.00 39.03 3.35
286 287 5.348986 TCGCTTTTTATAGCTGTACTGAGG 58.651 41.667 3.61 0.00 39.03 3.86
287 288 4.508124 CGCTTTTTATAGCTGTACTGAGGG 59.492 45.833 3.61 0.00 39.03 4.30
288 289 5.429130 GCTTTTTATAGCTGTACTGAGGGT 58.571 41.667 3.61 0.00 38.15 4.34
289 290 6.579865 GCTTTTTATAGCTGTACTGAGGGTA 58.420 40.000 3.61 0.00 38.15 3.69
290 291 7.217906 GCTTTTTATAGCTGTACTGAGGGTAT 58.782 38.462 3.61 5.16 38.15 2.73
291 292 7.171678 GCTTTTTATAGCTGTACTGAGGGTATG 59.828 40.741 3.61 0.00 38.15 2.39
292 293 6.665992 TTTATAGCTGTACTGAGGGTATGG 57.334 41.667 3.61 0.00 32.56 2.74
293 294 2.552093 AGCTGTACTGAGGGTATGGT 57.448 50.000 3.61 0.00 32.56 3.55
294 295 2.834113 AGCTGTACTGAGGGTATGGTT 58.166 47.619 3.61 0.00 32.56 3.67
295 296 2.501723 AGCTGTACTGAGGGTATGGTTG 59.498 50.000 3.61 0.00 32.56 3.77
296 297 2.500098 GCTGTACTGAGGGTATGGTTGA 59.500 50.000 3.61 0.00 32.56 3.18
297 298 3.055385 GCTGTACTGAGGGTATGGTTGAA 60.055 47.826 3.61 0.00 32.56 2.69
298 299 4.384208 GCTGTACTGAGGGTATGGTTGAAT 60.384 45.833 3.61 0.00 32.56 2.57
299 300 5.745227 CTGTACTGAGGGTATGGTTGAATT 58.255 41.667 0.00 0.00 32.56 2.17
300 301 5.741011 TGTACTGAGGGTATGGTTGAATTC 58.259 41.667 0.00 0.00 32.56 2.17
301 302 3.873910 ACTGAGGGTATGGTTGAATTCG 58.126 45.455 0.04 0.00 0.00 3.34
302 303 3.517901 ACTGAGGGTATGGTTGAATTCGA 59.482 43.478 0.04 0.00 0.00 3.71
303 304 3.869065 TGAGGGTATGGTTGAATTCGAC 58.131 45.455 16.39 16.39 0.00 4.20
304 305 3.517901 TGAGGGTATGGTTGAATTCGACT 59.482 43.478 22.34 8.90 0.00 4.18
305 306 4.120589 GAGGGTATGGTTGAATTCGACTC 58.879 47.826 22.34 14.22 0.00 3.36
306 307 3.118371 AGGGTATGGTTGAATTCGACTCC 60.118 47.826 22.34 18.06 0.00 3.85
307 308 3.118371 GGGTATGGTTGAATTCGACTCCT 60.118 47.826 22.34 11.54 0.00 3.69
308 309 4.120589 GGTATGGTTGAATTCGACTCCTC 58.879 47.826 22.34 8.85 0.00 3.71
309 310 2.762535 TGGTTGAATTCGACTCCTCC 57.237 50.000 22.34 8.69 0.00 4.30
310 311 1.067142 TGGTTGAATTCGACTCCTCCG 60.067 52.381 22.34 0.00 0.00 4.63
311 312 1.067071 GGTTGAATTCGACTCCTCCGT 60.067 52.381 22.34 0.00 0.00 4.69
312 313 1.993370 GTTGAATTCGACTCCTCCGTG 59.007 52.381 17.24 0.00 0.00 4.94
313 314 1.254026 TGAATTCGACTCCTCCGTGT 58.746 50.000 0.04 0.00 0.00 4.49
314 315 1.616865 TGAATTCGACTCCTCCGTGTT 59.383 47.619 0.04 0.00 0.00 3.32
315 316 1.993370 GAATTCGACTCCTCCGTGTTG 59.007 52.381 0.00 0.00 0.00 3.33
316 317 0.966920 ATTCGACTCCTCCGTGTTGT 59.033 50.000 0.00 0.00 0.00 3.32
317 318 0.031585 TTCGACTCCTCCGTGTTGTG 59.968 55.000 0.00 0.00 0.00 3.33
318 319 0.820482 TCGACTCCTCCGTGTTGTGA 60.820 55.000 0.00 0.00 0.00 3.58
319 320 0.387367 CGACTCCTCCGTGTTGTGAG 60.387 60.000 0.00 0.00 0.00 3.51
326 327 1.806542 CTCCGTGTTGTGAGGATTTGG 59.193 52.381 0.00 0.00 33.04 3.28
327 328 1.142060 TCCGTGTTGTGAGGATTTGGT 59.858 47.619 0.00 0.00 0.00 3.67
328 329 1.266718 CCGTGTTGTGAGGATTTGGTG 59.733 52.381 0.00 0.00 0.00 4.17
329 330 1.266718 CGTGTTGTGAGGATTTGGTGG 59.733 52.381 0.00 0.00 0.00 4.61
330 331 1.000274 GTGTTGTGAGGATTTGGTGGC 60.000 52.381 0.00 0.00 0.00 5.01
331 332 1.133513 TGTTGTGAGGATTTGGTGGCT 60.134 47.619 0.00 0.00 0.00 4.75
332 333 1.541588 GTTGTGAGGATTTGGTGGCTC 59.458 52.381 0.00 0.00 0.00 4.70
333 334 0.321564 TGTGAGGATTTGGTGGCTCG 60.322 55.000 0.00 0.00 0.00 5.03
334 335 0.036388 GTGAGGATTTGGTGGCTCGA 60.036 55.000 0.00 0.00 0.00 4.04
335 336 0.250234 TGAGGATTTGGTGGCTCGAG 59.750 55.000 8.45 8.45 0.00 4.04
336 337 0.537188 GAGGATTTGGTGGCTCGAGA 59.463 55.000 18.75 0.00 0.00 4.04
337 338 1.139853 GAGGATTTGGTGGCTCGAGAT 59.860 52.381 18.75 0.00 0.00 2.75
338 339 1.561542 AGGATTTGGTGGCTCGAGATT 59.438 47.619 18.75 0.00 0.00 2.40
339 340 1.672881 GGATTTGGTGGCTCGAGATTG 59.327 52.381 18.75 0.00 0.00 2.67
340 341 2.359900 GATTTGGTGGCTCGAGATTGT 58.640 47.619 18.75 0.00 0.00 2.71
341 342 3.531538 GATTTGGTGGCTCGAGATTGTA 58.468 45.455 18.75 0.00 0.00 2.41
342 343 3.410631 TTTGGTGGCTCGAGATTGTAA 57.589 42.857 18.75 2.09 0.00 2.41
343 344 2.380084 TGGTGGCTCGAGATTGTAAC 57.620 50.000 18.75 3.95 0.00 2.50
344 345 1.066430 TGGTGGCTCGAGATTGTAACC 60.066 52.381 18.75 13.17 0.00 2.85
345 346 1.653151 GTGGCTCGAGATTGTAACCC 58.347 55.000 18.75 5.50 0.00 4.11
346 347 1.207329 GTGGCTCGAGATTGTAACCCT 59.793 52.381 18.75 0.00 0.00 4.34
347 348 2.429610 GTGGCTCGAGATTGTAACCCTA 59.570 50.000 18.75 0.00 0.00 3.53
348 349 3.069729 GTGGCTCGAGATTGTAACCCTAT 59.930 47.826 18.75 0.00 0.00 2.57
349 350 3.321111 TGGCTCGAGATTGTAACCCTATC 59.679 47.826 18.75 0.00 0.00 2.08
350 351 3.321111 GGCTCGAGATTGTAACCCTATCA 59.679 47.826 18.75 0.00 0.00 2.15
351 352 4.021016 GGCTCGAGATTGTAACCCTATCAT 60.021 45.833 18.75 0.00 0.00 2.45
352 353 5.511545 GGCTCGAGATTGTAACCCTATCATT 60.512 44.000 18.75 0.00 0.00 2.57
353 354 6.295123 GGCTCGAGATTGTAACCCTATCATTA 60.295 42.308 18.75 0.00 0.00 1.90
354 355 7.324178 GCTCGAGATTGTAACCCTATCATTAT 58.676 38.462 18.75 0.00 0.00 1.28
355 356 7.276658 GCTCGAGATTGTAACCCTATCATTATG 59.723 40.741 18.75 0.00 0.00 1.90
356 357 8.417273 TCGAGATTGTAACCCTATCATTATGA 57.583 34.615 0.00 0.00 0.00 2.15
357 358 8.866093 TCGAGATTGTAACCCTATCATTATGAA 58.134 33.333 0.00 0.00 0.00 2.57
358 359 9.489084 CGAGATTGTAACCCTATCATTATGAAA 57.511 33.333 0.00 0.00 0.00 2.69
360 361 9.273016 AGATTGTAACCCTATCATTATGAAACG 57.727 33.333 0.00 0.00 0.00 3.60
361 362 9.268268 GATTGTAACCCTATCATTATGAAACGA 57.732 33.333 0.00 0.00 0.00 3.85
362 363 9.621629 ATTGTAACCCTATCATTATGAAACGAA 57.378 29.630 0.00 0.00 0.00 3.85
363 364 9.451002 TTGTAACCCTATCATTATGAAACGAAA 57.549 29.630 0.00 0.00 0.00 3.46
364 365 8.885722 TGTAACCCTATCATTATGAAACGAAAC 58.114 33.333 0.00 0.00 0.00 2.78
365 366 9.106070 GTAACCCTATCATTATGAAACGAAACT 57.894 33.333 0.00 0.00 0.00 2.66
366 367 7.787725 ACCCTATCATTATGAAACGAAACTC 57.212 36.000 0.00 0.00 0.00 3.01
367 368 7.565680 ACCCTATCATTATGAAACGAAACTCT 58.434 34.615 0.00 0.00 0.00 3.24
368 369 8.047310 ACCCTATCATTATGAAACGAAACTCTT 58.953 33.333 0.00 0.00 0.00 2.85
369 370 8.893727 CCCTATCATTATGAAACGAAACTCTTT 58.106 33.333 0.00 0.00 0.00 2.52
412 413 7.923414 AATCTAAGTGAACACAGGATTAACC 57.077 36.000 7.68 0.00 39.35 2.85
422 423 3.989167 CACAGGATTAACCACGTACGAAA 59.011 43.478 24.41 8.11 42.04 3.46
439 443 5.266756 ACGAAAATCAAACGCGTACAATA 57.733 34.783 14.46 0.00 32.94 1.90
509 513 5.391203 GCGGTAGTGGTACAAACTTTATTGG 60.391 44.000 5.84 0.00 44.16 3.16
514 518 5.708697 AGTGGTACAAACTTTATTGGGTAGC 59.291 40.000 0.00 0.00 44.16 3.58
528 535 1.761198 GGGTAGCCTACGAACTGGAAT 59.239 52.381 2.95 0.00 0.00 3.01
562 569 0.830444 AGGAGTACAACGGTCTGGCA 60.830 55.000 0.00 0.00 0.00 4.92
698 720 4.047059 GCGTCGAACCTCGGTCCA 62.047 66.667 0.00 0.00 40.88 4.02
1122 1147 2.281484 GCGTTGCCCTCCTTGTCA 60.281 61.111 0.00 0.00 0.00 3.58
1467 1498 0.608640 GGTTGAGGTGGTCGATGTCT 59.391 55.000 0.00 0.00 0.00 3.41
1778 1815 3.957027 CTGCATGCACGCACGCAAT 62.957 57.895 18.46 0.00 44.53 3.56
1779 1816 2.100023 GCATGCACGCACGCAATA 59.900 55.556 14.21 0.00 46.87 1.90
1812 1849 1.192146 AGAGTTAGGAGGCGTGCCAA 61.192 55.000 14.29 0.00 38.92 4.52
1813 1850 0.107654 GAGTTAGGAGGCGTGCCAAT 60.108 55.000 14.29 0.65 38.92 3.16
1814 1851 0.328258 AGTTAGGAGGCGTGCCAATT 59.672 50.000 14.29 0.00 38.92 2.32
1815 1852 1.173913 GTTAGGAGGCGTGCCAATTT 58.826 50.000 14.29 0.00 38.92 1.82
1843 1888 1.063488 GCAACAACACACGTGACCC 59.937 57.895 25.01 0.00 0.00 4.46
1853 1898 2.805546 CGTGACCCGTGGATCGAT 59.194 61.111 0.00 0.00 42.86 3.59
1965 2010 0.692476 TGAGCATGTTGTACCAGCCT 59.308 50.000 0.00 0.00 0.00 4.58
2024 2069 1.596752 ATGCACGCACAAGACCGAA 60.597 52.632 0.00 0.00 0.00 4.30
2029 2074 1.200839 CGCACAAGACCGAACGAAC 59.799 57.895 0.00 0.00 0.00 3.95
2030 2075 1.484227 CGCACAAGACCGAACGAACA 61.484 55.000 0.00 0.00 0.00 3.18
2031 2076 0.042448 GCACAAGACCGAACGAACAC 60.042 55.000 0.00 0.00 0.00 3.32
2036 2081 3.243636 ACAAGACCGAACGAACACACTAT 60.244 43.478 0.00 0.00 0.00 2.12
2059 2104 4.725810 TCCAGTTAGCCTACTAGGAGTACT 59.274 45.833 6.26 0.00 37.67 2.73
2098 2143 3.682858 GCTAGCTGTGAATTTACGTGGAA 59.317 43.478 7.70 0.00 0.00 3.53
2212 2265 1.001406 GATCTGCCTCCCCATAACTCG 59.999 57.143 0.00 0.00 0.00 4.18
2217 2270 0.981277 CCTCCCCATAACTCGGGTGT 60.981 60.000 0.00 0.00 42.77 4.16
2235 2288 4.152625 GTGCGCACACTCGGATGC 62.153 66.667 34.52 3.30 43.85 3.91
2247 2302 3.737172 GGATGCCCGTGTGTGTGC 61.737 66.667 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.803315 GTCATTACAGTTGAAGATGTATCTGTA 57.197 33.333 0.00 0.00 37.19 2.74
2 3 7.489435 CGTCATTACAGTTGAAGATGTATCTGT 59.511 37.037 0.00 0.00 37.19 3.41
3 4 7.515841 GCGTCATTACAGTTGAAGATGTATCTG 60.516 40.741 0.00 0.00 37.19 2.90
4 5 6.477033 GCGTCATTACAGTTGAAGATGTATCT 59.523 38.462 0.00 0.00 39.22 1.98
5 6 6.292381 GGCGTCATTACAGTTGAAGATGTATC 60.292 42.308 0.00 0.00 32.24 2.24
6 7 5.523916 GGCGTCATTACAGTTGAAGATGTAT 59.476 40.000 0.00 0.00 32.24 2.29
7 8 4.868171 GGCGTCATTACAGTTGAAGATGTA 59.132 41.667 0.00 0.00 0.00 2.29
8 9 3.684788 GGCGTCATTACAGTTGAAGATGT 59.315 43.478 0.00 0.00 0.00 3.06
9 10 3.935203 AGGCGTCATTACAGTTGAAGATG 59.065 43.478 0.00 0.00 0.00 2.90
10 11 4.207891 AGGCGTCATTACAGTTGAAGAT 57.792 40.909 0.00 0.00 0.00 2.40
11 12 3.678056 AGGCGTCATTACAGTTGAAGA 57.322 42.857 0.00 0.00 0.00 2.87
12 13 5.168569 TCTAAGGCGTCATTACAGTTGAAG 58.831 41.667 0.00 0.00 0.00 3.02
13 14 5.142061 TCTAAGGCGTCATTACAGTTGAA 57.858 39.130 0.00 0.00 0.00 2.69
14 15 4.794278 TCTAAGGCGTCATTACAGTTGA 57.206 40.909 0.00 0.00 0.00 3.18
15 16 4.201724 GCTTCTAAGGCGTCATTACAGTTG 60.202 45.833 0.00 0.00 0.00 3.16
16 17 3.933332 GCTTCTAAGGCGTCATTACAGTT 59.067 43.478 0.00 0.00 0.00 3.16
17 18 3.056107 TGCTTCTAAGGCGTCATTACAGT 60.056 43.478 0.00 0.00 0.00 3.55
18 19 3.521560 TGCTTCTAAGGCGTCATTACAG 58.478 45.455 0.00 0.00 0.00 2.74
19 20 3.194755 TCTGCTTCTAAGGCGTCATTACA 59.805 43.478 0.00 0.00 0.00 2.41
20 21 3.782046 TCTGCTTCTAAGGCGTCATTAC 58.218 45.455 0.00 0.00 0.00 1.89
21 22 3.699538 TCTCTGCTTCTAAGGCGTCATTA 59.300 43.478 0.00 0.00 0.00 1.90
22 23 2.497675 TCTCTGCTTCTAAGGCGTCATT 59.502 45.455 0.00 0.00 0.00 2.57
23 24 2.103373 TCTCTGCTTCTAAGGCGTCAT 58.897 47.619 0.00 0.00 0.00 3.06
24 25 1.545841 TCTCTGCTTCTAAGGCGTCA 58.454 50.000 0.00 0.00 0.00 4.35
25 26 2.544903 GGATCTCTGCTTCTAAGGCGTC 60.545 54.545 0.00 0.00 0.00 5.19
26 27 1.410882 GGATCTCTGCTTCTAAGGCGT 59.589 52.381 0.00 0.00 0.00 5.68
27 28 1.601663 CGGATCTCTGCTTCTAAGGCG 60.602 57.143 0.00 0.00 0.00 5.52
28 29 1.410882 ACGGATCTCTGCTTCTAAGGC 59.589 52.381 0.00 0.00 0.00 4.35
29 30 2.801342 GCACGGATCTCTGCTTCTAAGG 60.801 54.545 7.63 0.00 0.00 2.69
30 31 2.468831 GCACGGATCTCTGCTTCTAAG 58.531 52.381 7.63 0.00 0.00 2.18
31 32 1.202302 CGCACGGATCTCTGCTTCTAA 60.202 52.381 11.72 0.00 0.00 2.10
32 33 0.382158 CGCACGGATCTCTGCTTCTA 59.618 55.000 11.72 0.00 0.00 2.10
33 34 1.140589 CGCACGGATCTCTGCTTCT 59.859 57.895 11.72 0.00 0.00 2.85
34 35 0.737715 AACGCACGGATCTCTGCTTC 60.738 55.000 11.72 0.00 0.00 3.86
35 36 1.016130 CAACGCACGGATCTCTGCTT 61.016 55.000 11.72 2.09 0.00 3.91
36 37 1.446792 CAACGCACGGATCTCTGCT 60.447 57.895 11.72 0.00 0.00 4.24
37 38 0.807667 ATCAACGCACGGATCTCTGC 60.808 55.000 5.38 5.38 0.00 4.26
38 39 0.926155 CATCAACGCACGGATCTCTG 59.074 55.000 0.00 0.00 0.00 3.35
39 40 0.807667 GCATCAACGCACGGATCTCT 60.808 55.000 0.00 0.00 0.00 3.10
40 41 1.083806 TGCATCAACGCACGGATCTC 61.084 55.000 0.00 0.00 36.86 2.75
41 42 0.673333 TTGCATCAACGCACGGATCT 60.673 50.000 0.00 0.00 42.87 2.75
42 43 0.247814 CTTGCATCAACGCACGGATC 60.248 55.000 0.00 0.00 42.87 3.36
43 44 1.796151 CTTGCATCAACGCACGGAT 59.204 52.632 0.00 0.00 42.87 4.18
44 45 3.252964 CTTGCATCAACGCACGGA 58.747 55.556 0.00 0.00 42.87 4.69
45 46 2.176546 CCTTGCATCAACGCACGG 59.823 61.111 0.00 0.00 43.86 4.94
46 47 0.726827 ATACCTTGCATCAACGCACG 59.273 50.000 0.00 0.00 42.87 5.34
47 48 1.202177 CCATACCTTGCATCAACGCAC 60.202 52.381 0.00 0.00 42.87 5.34
48 49 1.093972 CCATACCTTGCATCAACGCA 58.906 50.000 0.00 0.00 41.03 5.24
49 50 0.248621 GCCATACCTTGCATCAACGC 60.249 55.000 0.00 0.00 0.00 4.84
50 51 0.381801 GGCCATACCTTGCATCAACG 59.618 55.000 0.00 0.00 34.51 4.10
61 62 2.508526 CTGAATAGCCAAGGCCATACC 58.491 52.381 5.01 0.00 43.17 2.73
62 63 1.882623 GCTGAATAGCCAAGGCCATAC 59.117 52.381 5.01 0.00 44.33 2.39
63 64 2.276732 GCTGAATAGCCAAGGCCATA 57.723 50.000 5.01 0.00 44.33 2.74
64 65 3.122369 GCTGAATAGCCAAGGCCAT 57.878 52.632 5.01 0.00 44.33 4.40
65 66 4.664062 GCTGAATAGCCAAGGCCA 57.336 55.556 5.01 0.00 44.33 5.36
74 75 1.929836 GCTTGTCCGAGTGCTGAATAG 59.070 52.381 0.00 0.00 0.00 1.73
75 76 1.405526 GGCTTGTCCGAGTGCTGAATA 60.406 52.381 0.00 0.00 0.00 1.75
76 77 0.674895 GGCTTGTCCGAGTGCTGAAT 60.675 55.000 0.00 0.00 0.00 2.57
77 78 1.301716 GGCTTGTCCGAGTGCTGAA 60.302 57.895 0.00 0.00 0.00 3.02
78 79 2.210013 AGGCTTGTCCGAGTGCTGA 61.210 57.895 0.00 0.00 40.77 4.26
79 80 2.031516 CAGGCTTGTCCGAGTGCTG 61.032 63.158 0.00 0.00 40.77 4.41
80 81 2.345244 CAGGCTTGTCCGAGTGCT 59.655 61.111 0.00 0.00 40.77 4.40
81 82 2.029844 GACAGGCTTGTCCGAGTGC 61.030 63.158 17.71 0.00 46.47 4.40
82 83 4.268687 GACAGGCTTGTCCGAGTG 57.731 61.111 17.71 0.00 46.47 3.51
89 90 2.363306 TTGGACAATGACAGGCTTGT 57.637 45.000 0.00 0.00 41.18 3.16
90 91 2.821378 TGATTGGACAATGACAGGCTTG 59.179 45.455 1.69 0.00 0.00 4.01
91 92 3.087031 CTGATTGGACAATGACAGGCTT 58.913 45.455 1.69 0.00 0.00 4.35
92 93 2.306805 TCTGATTGGACAATGACAGGCT 59.693 45.455 1.69 0.00 0.00 4.58
93 94 2.715046 TCTGATTGGACAATGACAGGC 58.285 47.619 1.69 0.00 0.00 4.85
94 95 5.191426 AGAATCTGATTGGACAATGACAGG 58.809 41.667 7.78 0.00 0.00 4.00
95 96 9.551734 TTATAGAATCTGATTGGACAATGACAG 57.448 33.333 7.78 5.05 0.00 3.51
96 97 9.904198 TTTATAGAATCTGATTGGACAATGACA 57.096 29.630 7.78 0.00 0.00 3.58
99 100 9.622004 GCATTTATAGAATCTGATTGGACAATG 57.378 33.333 7.78 10.03 0.00 2.82
100 101 8.800332 GGCATTTATAGAATCTGATTGGACAAT 58.200 33.333 7.78 0.00 0.00 2.71
101 102 7.231317 GGGCATTTATAGAATCTGATTGGACAA 59.769 37.037 7.78 0.00 0.00 3.18
102 103 6.716628 GGGCATTTATAGAATCTGATTGGACA 59.283 38.462 7.78 0.00 0.00 4.02
103 104 6.944862 AGGGCATTTATAGAATCTGATTGGAC 59.055 38.462 7.78 0.00 0.00 4.02
104 105 6.944290 CAGGGCATTTATAGAATCTGATTGGA 59.056 38.462 7.78 0.00 0.00 3.53
105 106 6.152323 CCAGGGCATTTATAGAATCTGATTGG 59.848 42.308 7.78 0.00 0.00 3.16
106 107 6.349944 GCCAGGGCATTTATAGAATCTGATTG 60.350 42.308 7.78 0.00 41.49 2.67
107 108 5.713861 GCCAGGGCATTTATAGAATCTGATT 59.286 40.000 5.20 1.81 41.49 2.57
108 109 5.259632 GCCAGGGCATTTATAGAATCTGAT 58.740 41.667 5.20 0.00 41.49 2.90
109 110 4.507335 GGCCAGGGCATTTATAGAATCTGA 60.507 45.833 13.10 0.00 44.11 3.27
110 111 3.760684 GGCCAGGGCATTTATAGAATCTG 59.239 47.826 13.10 0.00 44.11 2.90
111 112 3.398967 TGGCCAGGGCATTTATAGAATCT 59.601 43.478 12.83 0.00 44.11 2.40
112 113 3.766545 TGGCCAGGGCATTTATAGAATC 58.233 45.455 12.83 0.00 44.11 2.52
113 114 3.901570 TGGCCAGGGCATTTATAGAAT 57.098 42.857 12.83 0.00 44.11 2.40
114 115 3.901570 ATGGCCAGGGCATTTATAGAA 57.098 42.857 22.98 0.00 46.61 2.10
123 124 2.037687 CCAAGAATGGCCAGGGCA 59.962 61.111 19.93 19.93 44.11 5.36
132 133 4.342092 ACCAAAGTGTTTCCTCCAAGAATG 59.658 41.667 0.00 0.00 0.00 2.67
133 134 4.546674 ACCAAAGTGTTTCCTCCAAGAAT 58.453 39.130 0.00 0.00 0.00 2.40
134 135 3.976015 ACCAAAGTGTTTCCTCCAAGAA 58.024 40.909 0.00 0.00 0.00 2.52
135 136 3.662759 ACCAAAGTGTTTCCTCCAAGA 57.337 42.857 0.00 0.00 0.00 3.02
136 137 5.130350 TCTAACCAAAGTGTTTCCTCCAAG 58.870 41.667 0.00 0.00 0.00 3.61
137 138 5.118729 TCTAACCAAAGTGTTTCCTCCAA 57.881 39.130 0.00 0.00 0.00 3.53
138 139 4.781775 TCTAACCAAAGTGTTTCCTCCA 57.218 40.909 0.00 0.00 0.00 3.86
139 140 4.392138 CGATCTAACCAAAGTGTTTCCTCC 59.608 45.833 0.00 0.00 0.00 4.30
140 141 4.392138 CCGATCTAACCAAAGTGTTTCCTC 59.608 45.833 0.00 0.00 0.00 3.71
141 142 4.324267 CCGATCTAACCAAAGTGTTTCCT 58.676 43.478 0.00 0.00 0.00 3.36
142 143 3.119955 GCCGATCTAACCAAAGTGTTTCC 60.120 47.826 0.00 0.00 0.00 3.13
143 144 3.119955 GGCCGATCTAACCAAAGTGTTTC 60.120 47.826 0.00 0.00 0.00 2.78
144 145 2.817844 GGCCGATCTAACCAAAGTGTTT 59.182 45.455 0.00 0.00 0.00 2.83
145 146 2.039879 AGGCCGATCTAACCAAAGTGTT 59.960 45.455 0.00 0.00 0.00 3.32
146 147 1.628846 AGGCCGATCTAACCAAAGTGT 59.371 47.619 0.00 0.00 0.00 3.55
147 148 2.403252 AGGCCGATCTAACCAAAGTG 57.597 50.000 0.00 0.00 0.00 3.16
148 149 2.159142 CGTAGGCCGATCTAACCAAAGT 60.159 50.000 0.00 0.00 39.56 2.66
149 150 2.470821 CGTAGGCCGATCTAACCAAAG 58.529 52.381 0.00 0.00 39.56 2.77
150 151 1.137479 CCGTAGGCCGATCTAACCAAA 59.863 52.381 0.00 0.00 46.14 3.28
151 152 0.748450 CCGTAGGCCGATCTAACCAA 59.252 55.000 0.00 0.00 46.14 3.67
152 153 2.422303 CCGTAGGCCGATCTAACCA 58.578 57.895 0.00 0.00 46.14 3.67
165 166 3.628032 TCTCAGCATCTAAGTGACCGTAG 59.372 47.826 0.00 0.00 0.00 3.51
166 167 3.617284 TCTCAGCATCTAAGTGACCGTA 58.383 45.455 0.00 0.00 0.00 4.02
167 168 2.447443 TCTCAGCATCTAAGTGACCGT 58.553 47.619 0.00 0.00 0.00 4.83
168 169 3.724508 ATCTCAGCATCTAAGTGACCG 57.275 47.619 0.00 0.00 0.00 4.79
169 170 6.018343 GCTTTAATCTCAGCATCTAAGTGACC 60.018 42.308 0.00 0.00 35.95 4.02
170 171 6.760770 AGCTTTAATCTCAGCATCTAAGTGAC 59.239 38.462 0.04 0.00 38.61 3.67
171 172 6.882656 AGCTTTAATCTCAGCATCTAAGTGA 58.117 36.000 0.04 0.00 38.61 3.41
172 173 6.985645 AGAGCTTTAATCTCAGCATCTAAGTG 59.014 38.462 0.00 0.00 38.61 3.16
173 174 7.123355 AGAGCTTTAATCTCAGCATCTAAGT 57.877 36.000 0.00 0.00 38.61 2.24
174 175 9.709495 ATAAGAGCTTTAATCTCAGCATCTAAG 57.291 33.333 0.00 0.00 38.61 2.18
175 176 9.486497 CATAAGAGCTTTAATCTCAGCATCTAA 57.514 33.333 0.00 0.00 38.61 2.10
176 177 8.093307 CCATAAGAGCTTTAATCTCAGCATCTA 58.907 37.037 0.00 0.00 38.61 1.98
177 178 6.935771 CCATAAGAGCTTTAATCTCAGCATCT 59.064 38.462 0.00 0.00 38.61 2.90
178 179 6.709846 ACCATAAGAGCTTTAATCTCAGCATC 59.290 38.462 0.00 0.00 38.61 3.91
179 180 6.599445 ACCATAAGAGCTTTAATCTCAGCAT 58.401 36.000 0.00 0.00 38.61 3.79
180 181 5.994250 ACCATAAGAGCTTTAATCTCAGCA 58.006 37.500 0.00 0.00 38.61 4.41
181 182 6.540189 TCAACCATAAGAGCTTTAATCTCAGC 59.460 38.462 0.00 0.00 36.16 4.26
182 183 8.674263 ATCAACCATAAGAGCTTTAATCTCAG 57.326 34.615 0.00 0.00 33.15 3.35
183 184 7.439356 CGATCAACCATAAGAGCTTTAATCTCA 59.561 37.037 0.00 0.00 33.15 3.27
184 185 7.653713 TCGATCAACCATAAGAGCTTTAATCTC 59.346 37.037 0.00 0.00 0.00 2.75
185 186 7.500992 TCGATCAACCATAAGAGCTTTAATCT 58.499 34.615 0.00 0.00 0.00 2.40
186 187 7.653713 TCTCGATCAACCATAAGAGCTTTAATC 59.346 37.037 0.00 0.00 0.00 1.75
187 188 7.500992 TCTCGATCAACCATAAGAGCTTTAAT 58.499 34.615 0.00 0.00 0.00 1.40
188 189 6.873997 TCTCGATCAACCATAAGAGCTTTAA 58.126 36.000 0.00 0.00 0.00 1.52
189 190 6.096987 ACTCTCGATCAACCATAAGAGCTTTA 59.903 38.462 0.00 0.00 34.89 1.85
190 191 5.105146 ACTCTCGATCAACCATAAGAGCTTT 60.105 40.000 0.00 0.00 34.89 3.51
191 192 4.404073 ACTCTCGATCAACCATAAGAGCTT 59.596 41.667 0.00 0.00 34.89 3.74
192 193 3.957497 ACTCTCGATCAACCATAAGAGCT 59.043 43.478 0.00 0.00 34.89 4.09
193 194 4.314740 ACTCTCGATCAACCATAAGAGC 57.685 45.455 0.00 0.00 34.89 4.09
194 195 6.102663 ACAAACTCTCGATCAACCATAAGAG 58.897 40.000 0.00 0.00 37.01 2.85
195 196 6.037786 ACAAACTCTCGATCAACCATAAGA 57.962 37.500 0.00 0.00 0.00 2.10
196 197 6.727824 AACAAACTCTCGATCAACCATAAG 57.272 37.500 0.00 0.00 0.00 1.73
197 198 6.708502 TGAAACAAACTCTCGATCAACCATAA 59.291 34.615 0.00 0.00 0.00 1.90
198 199 6.147164 GTGAAACAAACTCTCGATCAACCATA 59.853 38.462 0.00 0.00 36.32 2.74
199 200 5.049405 GTGAAACAAACTCTCGATCAACCAT 60.049 40.000 0.00 0.00 36.32 3.55
200 201 4.272504 GTGAAACAAACTCTCGATCAACCA 59.727 41.667 0.00 0.00 36.32 3.67
201 202 4.511826 AGTGAAACAAACTCTCGATCAACC 59.488 41.667 0.00 0.00 41.43 3.77
202 203 5.659048 AGTGAAACAAACTCTCGATCAAC 57.341 39.130 0.00 0.00 41.43 3.18
203 204 7.709182 TCTTAAGTGAAACAAACTCTCGATCAA 59.291 33.333 1.63 0.00 41.43 2.57
204 205 7.207383 TCTTAAGTGAAACAAACTCTCGATCA 58.793 34.615 1.63 0.00 41.43 2.92
205 206 7.639162 TCTTAAGTGAAACAAACTCTCGATC 57.361 36.000 1.63 0.00 41.43 3.69
206 207 8.608844 AATCTTAAGTGAAACAAACTCTCGAT 57.391 30.769 1.63 0.00 41.43 3.59
207 208 8.975439 GTAATCTTAAGTGAAACAAACTCTCGA 58.025 33.333 1.63 0.00 41.43 4.04
208 209 8.979574 AGTAATCTTAAGTGAAACAAACTCTCG 58.020 33.333 1.63 0.00 41.43 4.04
231 232 9.197306 TGTGCTACCTTATTTTGATCTCTAGTA 57.803 33.333 0.00 0.00 0.00 1.82
232 233 8.079211 TGTGCTACCTTATTTTGATCTCTAGT 57.921 34.615 0.00 0.00 0.00 2.57
233 234 9.202273 GATGTGCTACCTTATTTTGATCTCTAG 57.798 37.037 0.00 0.00 0.00 2.43
234 235 8.704668 TGATGTGCTACCTTATTTTGATCTCTA 58.295 33.333 0.00 0.00 0.00 2.43
235 236 7.568349 TGATGTGCTACCTTATTTTGATCTCT 58.432 34.615 0.00 0.00 0.00 3.10
236 237 7.792374 TGATGTGCTACCTTATTTTGATCTC 57.208 36.000 0.00 0.00 0.00 2.75
237 238 7.831193 AGTTGATGTGCTACCTTATTTTGATCT 59.169 33.333 0.00 0.00 0.00 2.75
238 239 7.989826 AGTTGATGTGCTACCTTATTTTGATC 58.010 34.615 0.00 0.00 0.00 2.92
239 240 7.201644 CGAGTTGATGTGCTACCTTATTTTGAT 60.202 37.037 0.00 0.00 0.00 2.57
240 241 6.092122 CGAGTTGATGTGCTACCTTATTTTGA 59.908 38.462 0.00 0.00 0.00 2.69
241 242 6.250819 CGAGTTGATGTGCTACCTTATTTTG 58.749 40.000 0.00 0.00 0.00 2.44
242 243 5.163754 GCGAGTTGATGTGCTACCTTATTTT 60.164 40.000 0.00 0.00 0.00 1.82
243 244 4.332819 GCGAGTTGATGTGCTACCTTATTT 59.667 41.667 0.00 0.00 0.00 1.40
244 245 3.871594 GCGAGTTGATGTGCTACCTTATT 59.128 43.478 0.00 0.00 0.00 1.40
245 246 3.133003 AGCGAGTTGATGTGCTACCTTAT 59.867 43.478 0.00 0.00 35.56 1.73
246 247 2.496070 AGCGAGTTGATGTGCTACCTTA 59.504 45.455 0.00 0.00 35.56 2.69
247 248 1.276421 AGCGAGTTGATGTGCTACCTT 59.724 47.619 0.00 0.00 35.56 3.50
248 249 0.898320 AGCGAGTTGATGTGCTACCT 59.102 50.000 0.00 0.00 35.56 3.08
249 250 1.726853 AAGCGAGTTGATGTGCTACC 58.273 50.000 0.00 0.00 36.49 3.18
250 251 3.813529 AAAAGCGAGTTGATGTGCTAC 57.186 42.857 0.00 0.00 36.49 3.58
251 252 6.238103 GCTATAAAAAGCGAGTTGATGTGCTA 60.238 38.462 0.00 0.00 36.49 3.49
252 253 5.447818 GCTATAAAAAGCGAGTTGATGTGCT 60.448 40.000 0.00 0.00 39.89 4.40
253 254 4.730521 GCTATAAAAAGCGAGTTGATGTGC 59.269 41.667 0.00 0.00 31.76 4.57
264 265 7.951333 ATACCCTCAGTACAGCTATAAAAAGCG 60.951 40.741 0.00 0.00 39.66 4.68
265 266 5.429130 ACCCTCAGTACAGCTATAAAAAGC 58.571 41.667 0.00 0.00 43.11 3.51
266 267 7.657761 CCATACCCTCAGTACAGCTATAAAAAG 59.342 40.741 0.00 0.00 32.46 2.27
267 268 7.126726 ACCATACCCTCAGTACAGCTATAAAAA 59.873 37.037 0.00 0.00 32.46 1.94
268 269 6.614087 ACCATACCCTCAGTACAGCTATAAAA 59.386 38.462 0.00 0.00 32.46 1.52
269 270 6.141083 ACCATACCCTCAGTACAGCTATAAA 58.859 40.000 0.00 0.00 32.46 1.40
270 271 5.712752 ACCATACCCTCAGTACAGCTATAA 58.287 41.667 0.00 0.00 32.46 0.98
271 272 5.335028 ACCATACCCTCAGTACAGCTATA 57.665 43.478 0.00 0.00 32.46 1.31
272 273 4.200447 ACCATACCCTCAGTACAGCTAT 57.800 45.455 0.00 0.00 32.46 2.97
273 274 3.682592 ACCATACCCTCAGTACAGCTA 57.317 47.619 0.00 0.00 32.46 3.32
274 275 2.501723 CAACCATACCCTCAGTACAGCT 59.498 50.000 0.00 0.00 32.46 4.24
275 276 2.500098 TCAACCATACCCTCAGTACAGC 59.500 50.000 0.00 0.00 32.46 4.40
276 277 4.819105 TTCAACCATACCCTCAGTACAG 57.181 45.455 0.00 0.00 32.46 2.74
277 278 5.625886 CGAATTCAACCATACCCTCAGTACA 60.626 44.000 6.22 0.00 32.46 2.90
278 279 4.809426 CGAATTCAACCATACCCTCAGTAC 59.191 45.833 6.22 0.00 32.46 2.73
279 280 4.712829 TCGAATTCAACCATACCCTCAGTA 59.287 41.667 6.22 0.00 34.76 2.74
280 281 3.517901 TCGAATTCAACCATACCCTCAGT 59.482 43.478 6.22 0.00 0.00 3.41
281 282 3.871594 GTCGAATTCAACCATACCCTCAG 59.128 47.826 6.22 0.00 0.00 3.35
282 283 3.517901 AGTCGAATTCAACCATACCCTCA 59.482 43.478 6.22 0.00 0.00 3.86
283 284 4.120589 GAGTCGAATTCAACCATACCCTC 58.879 47.826 6.22 0.00 0.00 4.30
284 285 3.118371 GGAGTCGAATTCAACCATACCCT 60.118 47.826 6.22 0.00 0.00 4.34
285 286 3.118371 AGGAGTCGAATTCAACCATACCC 60.118 47.826 6.22 0.00 0.00 3.69
286 287 4.120589 GAGGAGTCGAATTCAACCATACC 58.879 47.826 6.22 0.00 0.00 2.73
287 288 4.120589 GGAGGAGTCGAATTCAACCATAC 58.879 47.826 6.22 0.00 0.00 2.39
288 289 3.181479 CGGAGGAGTCGAATTCAACCATA 60.181 47.826 6.22 0.00 0.00 2.74
289 290 2.418746 CGGAGGAGTCGAATTCAACCAT 60.419 50.000 6.22 0.00 0.00 3.55
290 291 1.067142 CGGAGGAGTCGAATTCAACCA 60.067 52.381 6.22 0.00 0.00 3.67
291 292 1.067071 ACGGAGGAGTCGAATTCAACC 60.067 52.381 6.22 3.02 0.00 3.77
292 293 1.993370 CACGGAGGAGTCGAATTCAAC 59.007 52.381 6.22 0.00 0.00 3.18
293 294 1.616865 ACACGGAGGAGTCGAATTCAA 59.383 47.619 6.22 0.00 0.00 2.69
294 295 1.254026 ACACGGAGGAGTCGAATTCA 58.746 50.000 6.22 0.00 0.00 2.57
295 296 1.993370 CAACACGGAGGAGTCGAATTC 59.007 52.381 0.00 0.00 0.00 2.17
296 297 1.343465 ACAACACGGAGGAGTCGAATT 59.657 47.619 0.00 0.00 0.00 2.17
297 298 0.966920 ACAACACGGAGGAGTCGAAT 59.033 50.000 0.00 0.00 0.00 3.34
298 299 0.031585 CACAACACGGAGGAGTCGAA 59.968 55.000 0.00 0.00 0.00 3.71
299 300 0.820482 TCACAACACGGAGGAGTCGA 60.820 55.000 0.00 0.00 0.00 4.20
300 301 0.387367 CTCACAACACGGAGGAGTCG 60.387 60.000 0.00 0.00 0.00 4.18
301 302 3.498676 CTCACAACACGGAGGAGTC 57.501 57.895 0.00 0.00 0.00 3.36
306 307 1.806542 CCAAATCCTCACAACACGGAG 59.193 52.381 0.00 0.00 0.00 4.63
307 308 1.142060 ACCAAATCCTCACAACACGGA 59.858 47.619 0.00 0.00 0.00 4.69
308 309 1.266718 CACCAAATCCTCACAACACGG 59.733 52.381 0.00 0.00 0.00 4.94
309 310 1.266718 CCACCAAATCCTCACAACACG 59.733 52.381 0.00 0.00 0.00 4.49
310 311 1.000274 GCCACCAAATCCTCACAACAC 60.000 52.381 0.00 0.00 0.00 3.32
311 312 1.133513 AGCCACCAAATCCTCACAACA 60.134 47.619 0.00 0.00 0.00 3.33
312 313 1.541588 GAGCCACCAAATCCTCACAAC 59.458 52.381 0.00 0.00 0.00 3.32
313 314 1.881925 CGAGCCACCAAATCCTCACAA 60.882 52.381 0.00 0.00 0.00 3.33
314 315 0.321564 CGAGCCACCAAATCCTCACA 60.322 55.000 0.00 0.00 0.00 3.58
315 316 0.036388 TCGAGCCACCAAATCCTCAC 60.036 55.000 0.00 0.00 0.00 3.51
316 317 0.250234 CTCGAGCCACCAAATCCTCA 59.750 55.000 0.00 0.00 0.00 3.86
317 318 0.537188 TCTCGAGCCACCAAATCCTC 59.463 55.000 7.81 0.00 0.00 3.71
318 319 1.207791 ATCTCGAGCCACCAAATCCT 58.792 50.000 7.81 0.00 0.00 3.24
319 320 1.672881 CAATCTCGAGCCACCAAATCC 59.327 52.381 7.81 0.00 0.00 3.01
320 321 2.359900 ACAATCTCGAGCCACCAAATC 58.640 47.619 7.81 0.00 0.00 2.17
321 322 2.496899 ACAATCTCGAGCCACCAAAT 57.503 45.000 7.81 0.00 0.00 2.32
322 323 3.071479 GTTACAATCTCGAGCCACCAAA 58.929 45.455 7.81 0.00 0.00 3.28
323 324 2.614481 GGTTACAATCTCGAGCCACCAA 60.614 50.000 7.81 0.00 0.00 3.67
324 325 1.066430 GGTTACAATCTCGAGCCACCA 60.066 52.381 7.81 0.00 0.00 4.17
325 326 1.653151 GGTTACAATCTCGAGCCACC 58.347 55.000 7.81 3.36 0.00 4.61
326 327 1.207329 AGGGTTACAATCTCGAGCCAC 59.793 52.381 7.81 0.00 32.24 5.01
327 328 1.568504 AGGGTTACAATCTCGAGCCA 58.431 50.000 7.81 0.00 32.24 4.75
328 329 3.321111 TGATAGGGTTACAATCTCGAGCC 59.679 47.826 7.81 0.49 0.00 4.70
329 330 4.585955 TGATAGGGTTACAATCTCGAGC 57.414 45.455 7.81 0.00 0.00 5.03
330 331 8.523658 TCATAATGATAGGGTTACAATCTCGAG 58.476 37.037 5.93 5.93 0.00 4.04
331 332 8.417273 TCATAATGATAGGGTTACAATCTCGA 57.583 34.615 0.00 0.00 0.00 4.04
332 333 9.489084 TTTCATAATGATAGGGTTACAATCTCG 57.511 33.333 0.00 0.00 0.00 4.04
334 335 9.273016 CGTTTCATAATGATAGGGTTACAATCT 57.727 33.333 0.00 0.00 0.00 2.40
335 336 9.268268 TCGTTTCATAATGATAGGGTTACAATC 57.732 33.333 0.00 0.00 0.00 2.67
336 337 9.621629 TTCGTTTCATAATGATAGGGTTACAAT 57.378 29.630 0.00 0.00 0.00 2.71
337 338 9.451002 TTTCGTTTCATAATGATAGGGTTACAA 57.549 29.630 0.00 0.00 0.00 2.41
338 339 8.885722 GTTTCGTTTCATAATGATAGGGTTACA 58.114 33.333 0.00 0.00 0.00 2.41
339 340 9.106070 AGTTTCGTTTCATAATGATAGGGTTAC 57.894 33.333 0.00 0.00 0.00 2.50
340 341 9.321562 GAGTTTCGTTTCATAATGATAGGGTTA 57.678 33.333 0.00 0.00 0.00 2.85
341 342 8.047310 AGAGTTTCGTTTCATAATGATAGGGTT 58.953 33.333 0.00 0.00 0.00 4.11
342 343 7.565680 AGAGTTTCGTTTCATAATGATAGGGT 58.434 34.615 0.00 0.00 0.00 4.34
343 344 8.438676 AAGAGTTTCGTTTCATAATGATAGGG 57.561 34.615 0.00 0.00 0.00 3.53
386 387 8.793592 GGTTAATCCTGTGTTCACTTAGATTTT 58.206 33.333 15.02 3.36 0.00 1.82
387 388 7.942341 TGGTTAATCCTGTGTTCACTTAGATTT 59.058 33.333 15.02 3.78 37.07 2.17
388 389 7.390718 GTGGTTAATCCTGTGTTCACTTAGATT 59.609 37.037 14.57 14.57 37.07 2.40
389 390 6.879458 GTGGTTAATCCTGTGTTCACTTAGAT 59.121 38.462 4.59 1.93 37.07 1.98
390 391 6.228258 GTGGTTAATCCTGTGTTCACTTAGA 58.772 40.000 4.59 0.00 37.07 2.10
391 392 5.120208 CGTGGTTAATCCTGTGTTCACTTAG 59.880 44.000 4.59 0.00 37.07 2.18
412 413 1.887480 CGCGTTTGATTTTCGTACGTG 59.113 47.619 16.05 0.00 36.57 4.49
509 513 2.429610 TGATTCCAGTTCGTAGGCTACC 59.570 50.000 18.58 5.26 0.00 3.18
514 518 5.880054 AATGTTTGATTCCAGTTCGTAGG 57.120 39.130 0.00 0.00 0.00 3.18
528 535 7.042321 CGTTGTACTCCTACAAGAAATGTTTGA 60.042 37.037 0.00 0.00 42.40 2.69
811 833 1.071605 GAAGCAAGAGATCAACGCGT 58.928 50.000 5.58 5.58 0.00 6.01
1122 1147 2.581354 GAGCTGTGGAGGATGCGT 59.419 61.111 0.00 0.00 0.00 5.24
1775 1812 5.095691 ACTCTGCAACGACTGTTTTATTG 57.904 39.130 0.00 0.00 35.72 1.90
1778 1815 4.748102 CCTAACTCTGCAACGACTGTTTTA 59.252 41.667 0.00 0.00 35.72 1.52
1779 1816 3.560068 CCTAACTCTGCAACGACTGTTTT 59.440 43.478 0.00 0.00 35.72 2.43
1812 1849 3.004734 GTGTTGTTGCTGCCTCAGTAAAT 59.995 43.478 0.00 0.00 37.77 1.40
1813 1850 2.357637 GTGTTGTTGCTGCCTCAGTAAA 59.642 45.455 0.00 0.00 37.77 2.01
1814 1851 1.946768 GTGTTGTTGCTGCCTCAGTAA 59.053 47.619 0.00 0.00 34.00 2.24
1815 1852 1.134250 TGTGTTGTTGCTGCCTCAGTA 60.134 47.619 0.00 0.00 33.43 2.74
1843 1888 1.599071 CAAATCCACCATCGATCCACG 59.401 52.381 0.00 0.00 44.09 4.94
1846 1891 0.954452 GGCAAATCCACCATCGATCC 59.046 55.000 0.00 0.00 34.01 3.36
1850 1895 1.402968 CTCAAGGCAAATCCACCATCG 59.597 52.381 0.00 0.00 37.29 3.84
1851 1896 2.726821 TCTCAAGGCAAATCCACCATC 58.273 47.619 0.00 0.00 37.29 3.51
1852 1897 2.905415 TCTCAAGGCAAATCCACCAT 57.095 45.000 0.00 0.00 37.29 3.55
1853 1898 2.041485 TCATCTCAAGGCAAATCCACCA 59.959 45.455 0.00 0.00 37.29 4.17
1942 1987 2.086869 CTGGTACAACATGCTCAAGGG 58.913 52.381 0.00 0.00 38.70 3.95
1965 2010 0.468226 ACTCGTGGAACAAGCAAGGA 59.532 50.000 0.00 0.00 44.16 3.36
2011 2056 1.200839 GTTCGTTCGGTCTTGTGCG 59.799 57.895 0.00 0.00 0.00 5.34
2024 2069 3.368116 GGCTAACTGGATAGTGTGTTCGT 60.368 47.826 0.00 0.00 37.19 3.85
2029 2074 5.241949 CCTAGTAGGCTAACTGGATAGTGTG 59.758 48.000 2.46 0.00 37.19 3.82
2030 2075 5.133999 TCCTAGTAGGCTAACTGGATAGTGT 59.866 44.000 11.75 0.00 34.33 3.55
2031 2076 5.632118 TCCTAGTAGGCTAACTGGATAGTG 58.368 45.833 11.75 0.00 34.33 2.74
2036 2081 4.725810 AGTACTCCTAGTAGGCTAACTGGA 59.274 45.833 11.75 3.26 34.61 3.86
2059 2104 3.742327 GCTAGCTAGACCATTGATGTGCA 60.742 47.826 25.15 0.00 0.00 4.57
2098 2143 3.695606 AGGTGATGCACGGACGCT 61.696 61.111 0.00 0.00 34.83 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.