Multiple sequence alignment - TraesCS5D01G245000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G245000 chr5D 100.000 3626 0 0 1 3626 353653998 353657623 0.000000e+00 6697.0
1 TraesCS5D01G245000 chr5D 90.705 312 12 7 2522 2817 353664173 353664483 2.030000e-107 399.0
2 TraesCS5D01G245000 chr5D 88.889 135 9 2 3360 3494 353664478 353664606 1.040000e-35 161.0
3 TraesCS5D01G245000 chr5B 91.597 2142 71 45 708 2815 417804531 417806597 0.000000e+00 2857.0
4 TraesCS5D01G245000 chr5B 91.000 500 20 9 3 482 417801026 417801520 0.000000e+00 651.0
5 TraesCS5D01G245000 chr5B 88.341 223 17 5 3360 3582 417806594 417806807 3.590000e-65 259.0
6 TraesCS5D01G245000 chr5B 96.923 65 2 0 479 543 417804470 417804534 3.830000e-20 110.0
7 TraesCS5D01G245000 chr5A 91.321 2028 89 37 787 2784 454704254 454706224 0.000000e+00 2689.0
8 TraesCS5D01G245000 chr5A 87.770 139 11 3 3356 3494 454710457 454710589 1.350000e-34 158.0
9 TraesCS5D01G245000 chr5A 79.545 264 16 21 311 543 454703929 454704185 1.740000e-33 154.0
10 TraesCS5D01G245000 chr3D 94.784 556 18 1 2819 3363 61905332 61905887 0.000000e+00 856.0
11 TraesCS5D01G245000 chr3D 86.750 400 46 3 2971 3363 445275235 445274836 4.300000e-119 438.0
12 TraesCS5D01G245000 chr3D 97.024 168 5 0 545 712 575732560 575732393 2.130000e-72 283.0
13 TraesCS5D01G245000 chr2D 92.639 557 29 2 2822 3366 623778849 623778293 0.000000e+00 791.0
14 TraesCS5D01G245000 chr2D 99.401 167 1 0 546 712 414295113 414295279 1.640000e-78 303.0
15 TraesCS5D01G245000 chr2D 97.024 168 5 0 545 712 631194264 631194431 2.130000e-72 283.0
16 TraesCS5D01G245000 chr7A 90.989 566 29 6 2819 3363 471815079 471815643 0.000000e+00 743.0
17 TraesCS5D01G245000 chr7A 75.712 527 114 8 2821 3335 310329850 310330374 6.010000e-63 252.0
18 TraesCS5D01G245000 chr3A 91.171 555 38 5 2820 3363 502831473 502832027 0.000000e+00 743.0
19 TraesCS5D01G245000 chr4B 78.067 1190 219 34 1447 2621 568736079 568737241 0.000000e+00 713.0
20 TraesCS5D01G245000 chr2A 92.812 473 23 5 2821 3282 748177529 748178001 0.000000e+00 675.0
21 TraesCS5D01G245000 chr2A 91.966 473 15 9 2821 3282 748130468 748130928 3.050000e-180 641.0
22 TraesCS5D01G245000 chr2A 90.909 473 32 5 2821 3282 748195695 748196167 3.070000e-175 625.0
23 TraesCS5D01G245000 chr6B 80.464 819 148 10 1446 2255 614312050 614312865 1.850000e-172 616.0
24 TraesCS5D01G245000 chr6B 80.220 819 150 10 1446 2255 614437360 614438175 4.000000e-169 604.0
25 TraesCS5D01G245000 chr6B 80.220 819 150 10 1446 2255 614582418 614583233 4.000000e-169 604.0
26 TraesCS5D01G245000 chr6B 80.122 820 149 10 1446 2255 636585585 636584770 1.860000e-167 599.0
27 TraesCS5D01G245000 chr6A 80.265 831 149 13 1446 2266 554824924 554825749 2.390000e-171 612.0
28 TraesCS5D01G245000 chr6A 80.144 831 150 11 1446 2266 564975151 564975976 1.110000e-169 606.0
29 TraesCS5D01G245000 chr4A 87.025 316 28 7 2815 3117 567695138 567695453 9.640000e-91 344.0
30 TraesCS5D01G245000 chr6D 97.605 167 4 0 546 712 69926516 69926350 1.650000e-73 287.0
31 TraesCS5D01G245000 chr6D 97.605 167 4 0 546 712 112815915 112815749 1.650000e-73 287.0
32 TraesCS5D01G245000 chr6D 97.605 167 4 0 546 712 348607207 348607373 1.650000e-73 287.0
33 TraesCS5D01G245000 chr6D 97.024 168 4 1 546 712 436404225 436404392 7.670000e-72 281.0
34 TraesCS5D01G245000 chr1D 97.006 167 5 0 546 712 471759256 471759090 7.670000e-72 281.0
35 TraesCS5D01G245000 chr7D 96.429 168 6 0 545 712 181008043 181008210 9.920000e-71 278.0
36 TraesCS5D01G245000 chr7D 93.478 46 3 0 3579 3624 564105515 564105470 6.500000e-08 69.4
37 TraesCS5D01G245000 chr1B 94.286 70 4 0 3294 3363 25038093 25038162 1.380000e-19 108.0
38 TraesCS5D01G245000 chr1B 94.286 70 4 0 3294 3363 25080705 25080774 1.380000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G245000 chr5D 353653998 353657623 3625 False 6697.00 6697 100.00000 1 3626 1 chr5D.!!$F1 3625
1 TraesCS5D01G245000 chr5B 417801026 417806807 5781 False 969.25 2857 91.96525 3 3582 4 chr5B.!!$F1 3579
2 TraesCS5D01G245000 chr5A 454703929 454706224 2295 False 1421.50 2689 85.43300 311 2784 2 chr5A.!!$F2 2473
3 TraesCS5D01G245000 chr3D 61905332 61905887 555 False 856.00 856 94.78400 2819 3363 1 chr3D.!!$F1 544
4 TraesCS5D01G245000 chr2D 623778293 623778849 556 True 791.00 791 92.63900 2822 3366 1 chr2D.!!$R1 544
5 TraesCS5D01G245000 chr7A 471815079 471815643 564 False 743.00 743 90.98900 2819 3363 1 chr7A.!!$F2 544
6 TraesCS5D01G245000 chr7A 310329850 310330374 524 False 252.00 252 75.71200 2821 3335 1 chr7A.!!$F1 514
7 TraesCS5D01G245000 chr3A 502831473 502832027 554 False 743.00 743 91.17100 2820 3363 1 chr3A.!!$F1 543
8 TraesCS5D01G245000 chr4B 568736079 568737241 1162 False 713.00 713 78.06700 1447 2621 1 chr4B.!!$F1 1174
9 TraesCS5D01G245000 chr6B 614312050 614312865 815 False 616.00 616 80.46400 1446 2255 1 chr6B.!!$F1 809
10 TraesCS5D01G245000 chr6B 614437360 614438175 815 False 604.00 604 80.22000 1446 2255 1 chr6B.!!$F2 809
11 TraesCS5D01G245000 chr6B 614582418 614583233 815 False 604.00 604 80.22000 1446 2255 1 chr6B.!!$F3 809
12 TraesCS5D01G245000 chr6B 636584770 636585585 815 True 599.00 599 80.12200 1446 2255 1 chr6B.!!$R1 809
13 TraesCS5D01G245000 chr6A 554824924 554825749 825 False 612.00 612 80.26500 1446 2266 1 chr6A.!!$F1 820
14 TraesCS5D01G245000 chr6A 564975151 564975976 825 False 606.00 606 80.14400 1446 2266 1 chr6A.!!$F2 820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 3529 0.319083 AGTTGCACGATAACGGGTCA 59.681 50.0 0.0 0.0 45.51 4.02 F
1194 4207 0.042448 GTGTTCGTTCGGTCTTGTGC 60.042 55.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 4413 0.328258 AGTTAGGAGGCGTGCCAATT 59.672 50.0 14.29 0.0 38.92 2.32 R
2680 5733 0.040058 TGGGTAGCCTACGAACTGGA 59.960 55.0 13.11 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.035975 GTCCACTACTTCGACTACTTAGACTC 59.964 46.154 0.00 0.00 0.00 3.36
63 64 7.667043 TTGTTTGTTCATCTATGTCCACTAC 57.333 36.000 0.00 0.00 0.00 2.73
66 67 7.936847 TGTTTGTTCATCTATGTCCACTACTTT 59.063 33.333 0.00 0.00 0.00 2.66
86 87 0.460722 GCCTACTTCCTCGACTTCCC 59.539 60.000 0.00 0.00 0.00 3.97
122 123 2.364632 CCATAACCATGACGCCAAGAA 58.635 47.619 0.00 0.00 33.67 2.52
190 191 1.019673 CAACTGGAAGGCATGATCCG 58.980 55.000 0.00 0.57 39.30 4.18
199 200 2.045524 AGGCATGATCCGTTCATCTCT 58.954 47.619 0.00 0.00 43.40 3.10
315 331 6.426025 CACTGTGGTCATGATTATGTATGGAG 59.574 42.308 0.00 0.00 35.73 3.86
377 395 7.643569 ATGCACATGAATATAACTGGTTTCA 57.356 32.000 0.00 0.00 33.06 2.69
442 469 0.521735 GGATGCAACACGAGGAAACC 59.478 55.000 0.00 0.00 0.00 3.27
446 476 1.139256 TGCAACACGAGGAAACCAGTA 59.861 47.619 0.00 0.00 0.00 2.74
542 3525 0.914551 CTCGAGTTGCACGATAACGG 59.085 55.000 3.62 0.00 44.46 4.44
543 3526 0.457166 TCGAGTTGCACGATAACGGG 60.457 55.000 0.00 0.00 46.60 5.28
544 3527 0.734942 CGAGTTGCACGATAACGGGT 60.735 55.000 0.00 0.00 45.51 5.28
545 3528 0.997196 GAGTTGCACGATAACGGGTC 59.003 55.000 0.00 0.00 45.51 4.46
546 3529 0.319083 AGTTGCACGATAACGGGTCA 59.681 50.000 0.00 0.00 45.51 4.02
547 3530 0.719465 GTTGCACGATAACGGGTCAG 59.281 55.000 0.00 0.00 45.51 3.51
548 3531 0.319083 TTGCACGATAACGGGTCAGT 59.681 50.000 0.00 0.00 45.51 3.41
549 3532 0.319083 TGCACGATAACGGGTCAGTT 59.681 50.000 0.00 0.00 45.51 3.16
550 3533 1.270412 TGCACGATAACGGGTCAGTTT 60.270 47.619 0.00 0.00 45.51 2.66
551 3534 1.802365 GCACGATAACGGGTCAGTTTT 59.198 47.619 0.00 0.00 45.51 2.43
552 3535 2.412325 GCACGATAACGGGTCAGTTTTG 60.412 50.000 0.00 0.00 45.51 2.44
553 3536 1.802365 ACGATAACGGGTCAGTTTTGC 59.198 47.619 0.00 0.00 44.46 3.68
554 3537 2.073816 CGATAACGGGTCAGTTTTGCT 58.926 47.619 0.00 0.00 35.70 3.91
555 3538 3.255725 CGATAACGGGTCAGTTTTGCTA 58.744 45.455 0.00 0.00 35.70 3.49
556 3539 3.680937 CGATAACGGGTCAGTTTTGCTAA 59.319 43.478 0.00 0.00 35.70 3.09
557 3540 4.201685 CGATAACGGGTCAGTTTTGCTAAG 60.202 45.833 0.00 0.00 35.70 2.18
558 3541 2.632987 ACGGGTCAGTTTTGCTAAGT 57.367 45.000 0.00 0.00 0.00 2.24
559 3542 2.490991 ACGGGTCAGTTTTGCTAAGTC 58.509 47.619 0.00 0.00 0.00 3.01
560 3543 2.104281 ACGGGTCAGTTTTGCTAAGTCT 59.896 45.455 0.00 0.00 0.00 3.24
561 3544 2.737252 CGGGTCAGTTTTGCTAAGTCTC 59.263 50.000 0.00 0.00 0.00 3.36
562 3545 3.740115 GGGTCAGTTTTGCTAAGTCTCA 58.260 45.455 0.00 0.00 0.00 3.27
563 3546 3.748568 GGGTCAGTTTTGCTAAGTCTCAG 59.251 47.826 0.00 0.00 0.00 3.35
564 3547 4.381411 GGTCAGTTTTGCTAAGTCTCAGT 58.619 43.478 0.00 0.00 0.00 3.41
565 3548 4.449405 GGTCAGTTTTGCTAAGTCTCAGTC 59.551 45.833 0.00 0.00 0.00 3.51
566 3549 4.149046 GTCAGTTTTGCTAAGTCTCAGTCG 59.851 45.833 0.00 0.00 0.00 4.18
567 3550 4.037565 TCAGTTTTGCTAAGTCTCAGTCGA 59.962 41.667 0.00 0.00 0.00 4.20
568 3551 4.149046 CAGTTTTGCTAAGTCTCAGTCGAC 59.851 45.833 7.70 7.70 0.00 4.20
569 3552 4.038162 AGTTTTGCTAAGTCTCAGTCGACT 59.962 41.667 13.58 13.58 45.73 4.18
578 3561 5.224562 AGTCTCAGTCGACTTAGATTTCG 57.775 43.478 27.34 10.32 41.27 3.46
579 3562 4.696402 AGTCTCAGTCGACTTAGATTTCGT 59.304 41.667 27.34 11.15 41.27 3.85
580 3563 5.181622 AGTCTCAGTCGACTTAGATTTCGTT 59.818 40.000 27.34 10.42 41.27 3.85
581 3564 6.370994 AGTCTCAGTCGACTTAGATTTCGTTA 59.629 38.462 27.34 4.85 41.27 3.18
582 3565 7.066043 AGTCTCAGTCGACTTAGATTTCGTTAT 59.934 37.037 27.34 8.20 41.27 1.89
583 3566 7.164498 GTCTCAGTCGACTTAGATTTCGTTATG 59.836 40.741 27.34 8.71 36.60 1.90
584 3567 6.849502 TCAGTCGACTTAGATTTCGTTATGT 58.150 36.000 17.26 0.00 36.60 2.29
585 3568 6.965500 TCAGTCGACTTAGATTTCGTTATGTC 59.035 38.462 17.26 0.00 36.60 3.06
586 3569 6.967767 CAGTCGACTTAGATTTCGTTATGTCT 59.032 38.462 17.26 0.00 36.60 3.41
587 3570 7.164498 CAGTCGACTTAGATTTCGTTATGTCTC 59.836 40.741 17.26 0.00 36.60 3.36
588 3571 6.965500 GTCGACTTAGATTTCGTTATGTCTCA 59.035 38.462 8.70 0.00 36.60 3.27
589 3572 7.164498 GTCGACTTAGATTTCGTTATGTCTCAG 59.836 40.741 8.70 0.00 36.60 3.35
590 3573 6.967767 CGACTTAGATTTCGTTATGTCTCAGT 59.032 38.462 0.00 0.00 30.24 3.41
591 3574 7.164498 CGACTTAGATTTCGTTATGTCTCAGTC 59.836 40.741 0.00 0.00 38.03 3.51
592 3575 6.967767 ACTTAGATTTCGTTATGTCTCAGTCG 59.032 38.462 0.00 0.00 0.00 4.18
593 3576 5.562506 AGATTTCGTTATGTCTCAGTCGA 57.437 39.130 0.00 0.00 0.00 4.20
594 3577 6.137794 AGATTTCGTTATGTCTCAGTCGAT 57.862 37.500 0.00 0.00 0.00 3.59
595 3578 5.974158 AGATTTCGTTATGTCTCAGTCGATG 59.026 40.000 0.00 0.00 0.00 3.84
596 3579 4.696899 TTCGTTATGTCTCAGTCGATGT 57.303 40.909 0.00 0.00 0.00 3.06
597 3580 4.696899 TCGTTATGTCTCAGTCGATGTT 57.303 40.909 0.00 0.00 0.00 2.71
598 3581 5.806366 TCGTTATGTCTCAGTCGATGTTA 57.194 39.130 0.00 0.00 0.00 2.41
599 3582 6.373186 TCGTTATGTCTCAGTCGATGTTAT 57.627 37.500 0.00 0.00 0.00 1.89
600 3583 7.486802 TCGTTATGTCTCAGTCGATGTTATA 57.513 36.000 0.00 0.00 0.00 0.98
601 3584 8.095937 TCGTTATGTCTCAGTCGATGTTATAT 57.904 34.615 0.00 0.00 0.00 0.86
602 3585 8.565416 TCGTTATGTCTCAGTCGATGTTATATT 58.435 33.333 0.00 0.00 0.00 1.28
603 3586 8.841822 CGTTATGTCTCAGTCGATGTTATATTC 58.158 37.037 0.00 0.00 0.00 1.75
604 3587 9.130312 GTTATGTCTCAGTCGATGTTATATTCC 57.870 37.037 0.00 0.00 0.00 3.01
605 3588 6.709018 TGTCTCAGTCGATGTTATATTCCA 57.291 37.500 0.00 0.00 0.00 3.53
606 3589 7.290110 TGTCTCAGTCGATGTTATATTCCAT 57.710 36.000 0.00 0.00 0.00 3.41
607 3590 7.726216 TGTCTCAGTCGATGTTATATTCCATT 58.274 34.615 0.00 0.00 0.00 3.16
608 3591 8.856103 TGTCTCAGTCGATGTTATATTCCATTA 58.144 33.333 0.00 0.00 0.00 1.90
609 3592 9.692749 GTCTCAGTCGATGTTATATTCCATTAA 57.307 33.333 0.00 0.00 0.00 1.40
615 3598 9.760660 GTCGATGTTATATTCCATTAATCTTGC 57.239 33.333 0.00 0.00 0.00 4.01
616 3599 9.500785 TCGATGTTATATTCCATTAATCTTGCA 57.499 29.630 0.00 0.00 0.00 4.08
636 3619 9.906660 TCTTGCATTAAGATTCGTACAAAAATT 57.093 25.926 0.00 0.00 40.43 1.82
708 3691 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
709 3692 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
727 3713 8.265285 CAGTCGACTGATTGGTACAAGTGTTAT 61.265 40.741 36.73 0.00 45.74 1.89
780 3774 3.320078 CGGAAGACGGCGCGTATG 61.320 66.667 6.90 0.00 41.37 2.39
805 3800 0.861837 GCGACTGCCTTATCCATTCG 59.138 55.000 0.00 0.00 38.09 3.34
822 3817 1.141881 CGGTTCGGGTCATCCAGAG 59.858 63.158 0.00 0.00 38.96 3.35
826 3821 2.202797 CGGGTCATCCAGAGCACG 60.203 66.667 0.00 0.00 46.51 5.34
871 3866 3.171528 GGCCGTCTCCCTATAAATACCT 58.828 50.000 0.00 0.00 0.00 3.08
923 3923 3.864160 GCAAGCTCTATATCCAGCTGACC 60.864 52.174 17.39 0.00 45.58 4.02
1108 4121 3.695606 AGGTGATGCACGGACGCT 61.696 61.111 0.00 0.00 34.83 5.07
1147 4160 3.742327 GCTAGCTAGACCATTGATGTGCA 60.742 47.826 25.15 0.00 0.00 4.57
1170 4183 4.725810 AGTACTCCTAGTAGGCTAACTGGA 59.274 45.833 11.75 3.26 34.61 3.86
1175 4188 5.632118 TCCTAGTAGGCTAACTGGATAGTG 58.368 45.833 11.75 0.00 34.33 2.74
1176 4189 5.133999 TCCTAGTAGGCTAACTGGATAGTGT 59.866 44.000 11.75 0.00 34.33 3.55
1177 4190 5.241949 CCTAGTAGGCTAACTGGATAGTGTG 59.758 48.000 2.46 0.00 37.19 3.82
1182 4195 3.368116 GGCTAACTGGATAGTGTGTTCGT 60.368 47.826 0.00 0.00 37.19 3.85
1192 4205 1.134907 AGTGTGTTCGTTCGGTCTTGT 60.135 47.619 0.00 0.00 0.00 3.16
1193 4206 1.005347 GTGTGTTCGTTCGGTCTTGTG 60.005 52.381 0.00 0.00 0.00 3.33
1194 4207 0.042448 GTGTTCGTTCGGTCTTGTGC 60.042 55.000 0.00 0.00 0.00 4.57
1195 4208 1.200839 GTTCGTTCGGTCTTGTGCG 59.799 57.895 0.00 0.00 0.00 5.34
1241 4254 0.468226 ACTCGTGGAACAAGCAAGGA 59.532 50.000 0.00 0.00 44.16 3.36
1264 4277 2.086869 CTGGTACAACATGCTCAAGGG 58.913 52.381 0.00 0.00 38.70 3.95
1353 4366 2.041485 TCATCTCAAGGCAAATCCACCA 59.959 45.455 0.00 0.00 37.29 4.17
1354 4367 2.905415 TCTCAAGGCAAATCCACCAT 57.095 45.000 0.00 0.00 37.29 3.55
1355 4368 2.726821 TCTCAAGGCAAATCCACCATC 58.273 47.619 0.00 0.00 37.29 3.51
1356 4369 1.402968 CTCAAGGCAAATCCACCATCG 59.597 52.381 0.00 0.00 37.29 3.84
1360 4373 0.954452 GGCAAATCCACCATCGATCC 59.046 55.000 0.00 0.00 34.01 3.36
1363 4376 1.599071 CAAATCCACCATCGATCCACG 59.401 52.381 0.00 0.00 44.09 4.94
1391 4412 1.134250 TGTGTTGTTGCTGCCTCAGTA 60.134 47.619 0.00 0.00 33.43 2.74
1392 4413 1.946768 GTGTTGTTGCTGCCTCAGTAA 59.053 47.619 0.00 0.00 34.00 2.24
1394 4415 3.004734 GTGTTGTTGCTGCCTCAGTAAAT 59.995 43.478 0.00 0.00 37.77 1.40
1427 4448 3.560068 CCTAACTCTGCAACGACTGTTTT 59.440 43.478 0.00 0.00 35.72 2.43
1428 4449 4.748102 CCTAACTCTGCAACGACTGTTTTA 59.252 41.667 0.00 0.00 35.72 1.52
1431 4452 5.095691 ACTCTGCAACGACTGTTTTATTG 57.904 39.130 0.00 0.00 35.72 1.90
2084 5117 2.581354 GAGCTGTGGAGGATGCGT 59.419 61.111 0.00 0.00 0.00 5.24
2395 5433 1.071605 GAAGCAAGAGATCAACGCGT 58.928 50.000 5.58 5.58 0.00 6.01
2634 5672 2.618219 GCGGCGCTAGCTAGCTAGA 61.618 63.158 42.59 19.89 46.56 2.43
2678 5731 7.042321 CGTTGTACTCCTACAAGAAATGTTTGA 60.042 37.037 0.00 0.00 42.40 2.69
2680 5733 8.918202 TGTACTCCTACAAGAAATGTTTGATT 57.082 30.769 0.00 0.00 43.63 2.57
2682 5735 7.454260 ACTCCTACAAGAAATGTTTGATTCC 57.546 36.000 0.00 0.00 43.63 3.01
2683 5736 7.004086 ACTCCTACAAGAAATGTTTGATTCCA 58.996 34.615 0.00 0.00 43.63 3.53
2684 5737 7.175641 ACTCCTACAAGAAATGTTTGATTCCAG 59.824 37.037 0.00 0.00 43.63 3.86
2692 5747 5.880054 AATGTTTGATTCCAGTTCGTAGG 57.120 39.130 0.00 0.00 0.00 3.18
2697 5752 2.429610 TGATTCCAGTTCGTAGGCTACC 59.570 50.000 18.58 5.26 0.00 3.18
2794 5852 1.887480 CGCGTTTGATTTTCGTACGTG 59.113 47.619 16.05 0.00 36.57 4.49
2812 5870 3.181458 ACGTGGTTAATCCTGTGTTCACT 60.181 43.478 4.59 0.00 37.07 3.41
2813 5871 3.813166 CGTGGTTAATCCTGTGTTCACTT 59.187 43.478 4.59 0.00 37.07 3.16
2814 5872 4.992319 CGTGGTTAATCCTGTGTTCACTTA 59.008 41.667 4.59 0.00 37.07 2.24
2815 5873 5.120208 CGTGGTTAATCCTGTGTTCACTTAG 59.880 44.000 4.59 0.00 37.07 2.18
2816 5874 6.228258 GTGGTTAATCCTGTGTTCACTTAGA 58.772 40.000 4.59 0.00 37.07 2.10
2817 5875 6.879458 GTGGTTAATCCTGTGTTCACTTAGAT 59.121 38.462 4.59 1.93 37.07 1.98
2929 6008 5.625886 CGAATTCAACCATACCCTCAGTACA 60.626 44.000 6.22 0.00 32.46 2.90
2958 6037 0.898320 AGCGAGTTGATGTGCTACCT 59.102 50.000 0.00 0.00 35.56 3.08
3072 6152 3.976015 ACCAAAGTGTTTCCTCCAAGAA 58.024 40.909 0.00 0.00 0.00 2.52
3159 6239 1.202177 CCATACCTTGCATCAACGCAC 60.202 52.381 0.00 0.00 42.87 5.34
3345 6425 2.606290 GCCAATGCTTGACGGGAGTAC 61.606 57.143 0.00 0.00 37.69 2.73
3363 6443 5.007385 AGTACGGCAGGTATTGTTCTTAG 57.993 43.478 0.00 0.00 32.74 2.18
3370 6450 5.450550 GGCAGGTATTGTTCTTAGAATTGCC 60.451 44.000 0.00 6.10 33.77 4.52
3380 6460 6.204688 TGTTCTTAGAATTGCCAACACTACAG 59.795 38.462 0.00 0.00 0.00 2.74
3398 6478 5.642063 ACTACAGGGAAAATTACATGTCACG 59.358 40.000 0.00 0.00 0.00 4.35
3399 6479 4.647611 ACAGGGAAAATTACATGTCACGA 58.352 39.130 0.00 0.00 0.00 4.35
3400 6480 5.253330 ACAGGGAAAATTACATGTCACGAT 58.747 37.500 0.00 0.00 0.00 3.73
3401 6481 5.123820 ACAGGGAAAATTACATGTCACGATG 59.876 40.000 0.00 0.00 0.00 3.84
3402 6482 5.123820 CAGGGAAAATTACATGTCACGATGT 59.876 40.000 0.00 0.00 39.87 3.06
3403 6483 5.123820 AGGGAAAATTACATGTCACGATGTG 59.876 40.000 0.00 0.00 37.16 3.21
3404 6484 5.123186 GGGAAAATTACATGTCACGATGTGA 59.877 40.000 0.00 0.00 40.50 3.58
3420 6500 2.616960 TGTGATGTGGCTCGATGTAAC 58.383 47.619 0.00 0.00 0.00 2.50
3422 6502 1.831106 TGATGTGGCTCGATGTAACCT 59.169 47.619 0.00 0.00 0.00 3.50
3437 6517 6.565247 CGATGTAACCTGAGTGTAAAAACACC 60.565 42.308 5.09 0.00 41.26 4.16
3440 6520 2.092807 ACCTGAGTGTAAAAACACCGGT 60.093 45.455 0.00 0.00 41.26 5.28
3444 6524 4.370917 TGAGTGTAAAAACACCGGTACTC 58.629 43.478 18.70 18.70 41.26 2.59
3521 6601 2.056223 GTGGGCATGGCAGCTGAAT 61.056 57.895 20.43 7.26 34.17 2.57
3522 6602 1.305465 TGGGCATGGCAGCTGAATT 60.305 52.632 20.43 0.00 34.17 2.17
3523 6603 0.905809 TGGGCATGGCAGCTGAATTT 60.906 50.000 20.43 0.00 34.17 1.82
3524 6604 0.251073 GGGCATGGCAGCTGAATTTT 59.749 50.000 20.43 0.00 34.17 1.82
3525 6605 1.339342 GGGCATGGCAGCTGAATTTTT 60.339 47.619 20.43 0.00 34.17 1.94
3564 6644 7.495279 TGGGCATTATTTTTATCAATGTTGAGC 59.505 33.333 1.65 0.00 41.08 4.26
3567 6647 9.858247 GCATTATTTTTATCAATGTTGAGCATG 57.142 29.630 1.65 0.00 41.08 4.06
3583 6663 1.792949 GCATGTCGCTTATCGTTAGGG 59.207 52.381 0.00 0.00 39.67 3.53
3584 6664 2.545113 GCATGTCGCTTATCGTTAGGGA 60.545 50.000 0.00 0.00 39.67 4.20
3585 6665 3.861131 GCATGTCGCTTATCGTTAGGGAT 60.861 47.826 0.00 0.00 37.01 3.85
3586 6666 4.307432 CATGTCGCTTATCGTTAGGGATT 58.693 43.478 0.00 0.00 37.01 3.01
3587 6667 5.466819 CATGTCGCTTATCGTTAGGGATTA 58.533 41.667 0.00 0.00 37.01 1.75
3588 6668 5.518848 TGTCGCTTATCGTTAGGGATTAA 57.481 39.130 0.00 0.00 37.01 1.40
3589 6669 6.092955 TGTCGCTTATCGTTAGGGATTAAT 57.907 37.500 0.00 0.00 37.01 1.40
3590 6670 7.218228 TGTCGCTTATCGTTAGGGATTAATA 57.782 36.000 0.00 0.00 37.01 0.98
3591 6671 7.660112 TGTCGCTTATCGTTAGGGATTAATAA 58.340 34.615 0.00 0.00 37.01 1.40
3592 6672 8.143193 TGTCGCTTATCGTTAGGGATTAATAAA 58.857 33.333 0.00 0.00 37.01 1.40
3593 6673 8.981647 GTCGCTTATCGTTAGGGATTAATAAAA 58.018 33.333 0.00 0.00 37.01 1.52
3594 6674 9.545105 TCGCTTATCGTTAGGGATTAATAAAAA 57.455 29.630 0.00 0.00 39.67 1.94
3625 6705 5.895216 ATTAATCGATTTTACCGGTCGAC 57.105 39.130 17.19 7.13 45.72 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.366070 CGAAGTAGTGGACACAGACGAAT 60.366 47.826 5.14 0.00 0.00 3.34
2 3 2.031420 CGAAGTAGTGGACACAGACGAA 60.031 50.000 5.14 0.00 0.00 3.85
3 4 1.534163 CGAAGTAGTGGACACAGACGA 59.466 52.381 5.14 0.00 0.00 4.20
4 5 1.534163 TCGAAGTAGTGGACACAGACG 59.466 52.381 5.14 3.81 0.00 4.18
5 6 2.553172 AGTCGAAGTAGTGGACACAGAC 59.447 50.000 5.14 2.66 37.43 3.51
7 8 3.752222 AGTAGTCGAAGTAGTGGACACAG 59.248 47.826 5.14 0.00 37.43 3.66
8 9 3.748083 AGTAGTCGAAGTAGTGGACACA 58.252 45.455 5.14 0.00 37.43 3.72
9 10 4.762956 AAGTAGTCGAAGTAGTGGACAC 57.237 45.455 0.00 0.00 37.43 3.67
10 11 5.641209 GTCTAAGTAGTCGAAGTAGTGGACA 59.359 44.000 0.00 0.00 37.43 4.02
11 12 5.874261 AGTCTAAGTAGTCGAAGTAGTGGAC 59.126 44.000 0.00 0.00 35.30 4.02
12 13 6.047511 AGTCTAAGTAGTCGAAGTAGTGGA 57.952 41.667 0.00 0.00 0.00 4.02
36 37 8.498054 AGTGGACATAGATGAACAAACAATAG 57.502 34.615 0.00 0.00 0.00 1.73
54 55 3.007614 GGAAGTAGGCAAAGTAGTGGACA 59.992 47.826 0.00 0.00 0.00 4.02
63 64 3.254892 GAAGTCGAGGAAGTAGGCAAAG 58.745 50.000 0.00 0.00 0.00 2.77
66 67 1.183549 GGAAGTCGAGGAAGTAGGCA 58.816 55.000 0.00 0.00 0.00 4.75
86 87 4.565652 GGTTATGGCCCATAGTGATACTGG 60.566 50.000 3.20 0.00 0.00 4.00
190 191 5.699458 TGAACCCGTAAAAAGAGAGATGAAC 59.301 40.000 0.00 0.00 0.00 3.18
199 200 6.114767 ACTAACACTTGAACCCGTAAAAAGA 58.885 36.000 0.00 0.00 0.00 2.52
249 262 1.438651 TGAATGCTGGTCGTGTAAGC 58.561 50.000 0.00 0.00 37.46 3.09
292 308 6.528321 ACTCCATACATAATCATGACCACAG 58.472 40.000 0.00 0.00 35.96 3.66
355 373 7.812191 TGTTTGAAACCAGTTATATTCATGTGC 59.188 33.333 5.50 0.00 32.35 4.57
377 395 7.178274 TGTCCTATGTATTGCAATCCTTTGTTT 59.822 33.333 16.86 0.00 35.17 2.83
442 469 3.235195 CGACCGAGACACTTTTCTACTG 58.765 50.000 0.00 0.00 0.00 2.74
446 476 2.350197 CGTACGACCGAGACACTTTTCT 60.350 50.000 10.44 0.00 0.00 2.52
472 502 6.516194 CGTCCGTTATCCATTGTTAGGACTAT 60.516 42.308 9.23 0.00 43.26 2.12
473 503 5.221106 CGTCCGTTATCCATTGTTAGGACTA 60.221 44.000 9.23 0.00 43.26 2.59
542 3525 4.381411 ACTGAGACTTAGCAAAACTGACC 58.619 43.478 0.00 0.00 0.00 4.02
543 3526 4.149046 CGACTGAGACTTAGCAAAACTGAC 59.851 45.833 0.00 0.00 0.00 3.51
544 3527 4.037565 TCGACTGAGACTTAGCAAAACTGA 59.962 41.667 0.00 0.00 0.00 3.41
545 3528 4.149046 GTCGACTGAGACTTAGCAAAACTG 59.851 45.833 8.70 0.00 38.09 3.16
546 3529 4.299978 GTCGACTGAGACTTAGCAAAACT 58.700 43.478 8.70 0.00 38.09 2.66
547 3530 4.632740 GTCGACTGAGACTTAGCAAAAC 57.367 45.455 8.70 0.00 38.09 2.43
557 3540 4.972201 ACGAAATCTAAGTCGACTGAGAC 58.028 43.478 30.97 18.96 36.33 3.36
558 3541 5.624344 AACGAAATCTAAGTCGACTGAGA 57.376 39.130 30.58 30.58 39.64 3.27
559 3542 6.967767 ACATAACGAAATCTAAGTCGACTGAG 59.032 38.462 22.32 22.32 39.64 3.35
560 3543 6.849502 ACATAACGAAATCTAAGTCGACTGA 58.150 36.000 20.85 13.61 39.64 3.41
561 3544 6.967767 AGACATAACGAAATCTAAGTCGACTG 59.032 38.462 20.85 7.79 39.64 3.51
562 3545 7.086230 AGACATAACGAAATCTAAGTCGACT 57.914 36.000 13.58 13.58 39.64 4.18
563 3546 6.965500 TGAGACATAACGAAATCTAAGTCGAC 59.035 38.462 7.70 7.70 39.64 4.20
564 3547 7.080353 TGAGACATAACGAAATCTAAGTCGA 57.920 36.000 0.00 0.00 39.64 4.20
565 3548 6.967767 ACTGAGACATAACGAAATCTAAGTCG 59.032 38.462 0.00 0.00 42.91 4.18
566 3549 7.164498 CGACTGAGACATAACGAAATCTAAGTC 59.836 40.741 7.33 7.33 42.70 3.01
567 3550 6.967767 CGACTGAGACATAACGAAATCTAAGT 59.032 38.462 0.00 0.00 35.87 2.24
568 3551 7.187480 TCGACTGAGACATAACGAAATCTAAG 58.813 38.462 0.00 0.00 0.00 2.18
569 3552 7.080353 TCGACTGAGACATAACGAAATCTAA 57.920 36.000 0.00 0.00 0.00 2.10
570 3553 6.673154 TCGACTGAGACATAACGAAATCTA 57.327 37.500 0.00 0.00 0.00 1.98
571 3554 5.562506 TCGACTGAGACATAACGAAATCT 57.437 39.130 0.00 0.00 0.00 2.40
572 3555 5.744345 ACATCGACTGAGACATAACGAAATC 59.256 40.000 0.00 0.00 33.77 2.17
573 3556 5.651530 ACATCGACTGAGACATAACGAAAT 58.348 37.500 0.00 0.00 33.77 2.17
574 3557 5.055642 ACATCGACTGAGACATAACGAAA 57.944 39.130 0.00 0.00 33.77 3.46
575 3558 4.696899 ACATCGACTGAGACATAACGAA 57.303 40.909 0.00 0.00 33.77 3.85
576 3559 4.696899 AACATCGACTGAGACATAACGA 57.303 40.909 0.00 0.00 0.00 3.85
577 3560 8.729529 AATATAACATCGACTGAGACATAACG 57.270 34.615 0.00 0.00 0.00 3.18
578 3561 9.130312 GGAATATAACATCGACTGAGACATAAC 57.870 37.037 0.00 0.00 0.00 1.89
579 3562 8.856103 TGGAATATAACATCGACTGAGACATAA 58.144 33.333 0.00 0.00 0.00 1.90
580 3563 8.404107 TGGAATATAACATCGACTGAGACATA 57.596 34.615 0.00 0.00 0.00 2.29
581 3564 7.290110 TGGAATATAACATCGACTGAGACAT 57.710 36.000 0.00 0.00 0.00 3.06
582 3565 6.709018 TGGAATATAACATCGACTGAGACA 57.291 37.500 0.00 0.00 0.00 3.41
583 3566 9.692749 TTAATGGAATATAACATCGACTGAGAC 57.307 33.333 0.00 0.00 0.00 3.36
589 3572 9.760660 GCAAGATTAATGGAATATAACATCGAC 57.239 33.333 0.00 0.00 0.00 4.20
590 3573 9.500785 TGCAAGATTAATGGAATATAACATCGA 57.499 29.630 0.00 0.00 0.00 3.59
672 3655 7.015292 ACTTAACCAAGTCTCACTCAAGTGATA 59.985 37.037 12.96 3.87 44.28 2.15
673 3656 6.183361 ACTTAACCAAGTCTCACTCAAGTGAT 60.183 38.462 12.96 0.00 44.28 3.06
674 3657 5.128827 ACTTAACCAAGTCTCACTCAAGTGA 59.871 40.000 12.07 12.07 45.66 3.41
675 3658 5.360591 ACTTAACCAAGTCTCACTCAAGTG 58.639 41.667 3.69 3.69 41.25 3.16
676 3659 5.615925 ACTTAACCAAGTCTCACTCAAGT 57.384 39.130 0.00 0.00 41.25 3.16
701 3684 3.675225 CACTTGTACCAATCAGTCGACTG 59.325 47.826 34.76 34.76 45.08 3.51
702 3685 3.321111 ACACTTGTACCAATCAGTCGACT 59.679 43.478 13.58 13.58 0.00 4.18
703 3686 3.650139 ACACTTGTACCAATCAGTCGAC 58.350 45.455 7.70 7.70 0.00 4.20
704 3687 4.330944 AACACTTGTACCAATCAGTCGA 57.669 40.909 0.00 0.00 0.00 4.20
705 3688 9.181805 CTATATAACACTTGTACCAATCAGTCG 57.818 37.037 0.00 0.00 0.00 4.18
706 3689 8.979574 GCTATATAACACTTGTACCAATCAGTC 58.020 37.037 0.00 0.00 0.00 3.51
707 3690 7.931948 GGCTATATAACACTTGTACCAATCAGT 59.068 37.037 0.00 0.00 0.00 3.41
708 3691 7.931407 TGGCTATATAACACTTGTACCAATCAG 59.069 37.037 0.00 0.00 0.00 2.90
709 3692 7.797062 TGGCTATATAACACTTGTACCAATCA 58.203 34.615 0.00 0.00 0.00 2.57
727 3713 4.036027 GTCTAGTACGTTGTGCTGGCTATA 59.964 45.833 0.00 0.00 30.04 1.31
728 3714 3.021695 TCTAGTACGTTGTGCTGGCTAT 58.978 45.455 0.00 0.00 30.04 2.97
729 3715 2.163010 GTCTAGTACGTTGTGCTGGCTA 59.837 50.000 0.00 0.00 30.04 3.93
730 3716 1.067776 GTCTAGTACGTTGTGCTGGCT 60.068 52.381 0.00 0.00 30.04 4.75
777 3771 3.271586 GGCAGTCGCGCATGCATA 61.272 61.111 28.34 0.00 44.37 3.14
779 3773 3.948961 TAAGGCAGTCGCGCATGCA 62.949 57.895 28.34 12.09 44.37 3.96
780 3774 2.435610 GATAAGGCAGTCGCGCATGC 62.436 60.000 22.27 22.27 41.80 4.06
805 3800 1.153349 GCTCTGGATGACCCGAACC 60.153 63.158 0.00 0.00 37.93 3.62
857 3852 3.073356 CGGGGCAAAGGTATTTATAGGGA 59.927 47.826 0.00 0.00 0.00 4.20
871 3866 3.562232 AGAACGTCCCGGGGCAAA 61.562 61.111 27.89 0.00 0.00 3.68
923 3923 2.058798 CGTGTGTAGTACTTGTGGCTG 58.941 52.381 0.00 0.00 0.00 4.85
959 3962 3.737172 GGATGCCCGTGTGTGTGC 61.737 66.667 0.00 0.00 0.00 4.57
971 3976 4.152625 GTGCGCACACTCGGATGC 62.153 66.667 34.52 3.30 43.85 3.91
989 3994 0.981277 CCTCCCCATAACTCGGGTGT 60.981 60.000 0.00 0.00 42.77 4.16
994 3999 1.001406 GATCTGCCTCCCCATAACTCG 59.999 57.143 0.00 0.00 0.00 4.18
1108 4121 3.682858 GCTAGCTGTGAATTTACGTGGAA 59.317 43.478 7.70 0.00 0.00 3.53
1147 4160 4.725810 TCCAGTTAGCCTACTAGGAGTACT 59.274 45.833 6.26 0.00 37.67 2.73
1170 4183 3.243636 ACAAGACCGAACGAACACACTAT 60.244 43.478 0.00 0.00 0.00 2.12
1175 4188 0.042448 GCACAAGACCGAACGAACAC 60.042 55.000 0.00 0.00 0.00 3.32
1176 4189 1.484227 CGCACAAGACCGAACGAACA 61.484 55.000 0.00 0.00 0.00 3.18
1177 4190 1.200839 CGCACAAGACCGAACGAAC 59.799 57.895 0.00 0.00 0.00 3.95
1182 4195 1.596752 ATGCACGCACAAGACCGAA 60.597 52.632 0.00 0.00 0.00 4.30
1241 4254 0.692476 TGAGCATGTTGTACCAGCCT 59.308 50.000 0.00 0.00 0.00 4.58
1353 4366 2.805546 CGTGACCCGTGGATCGAT 59.194 61.111 0.00 0.00 42.86 3.59
1363 4376 1.063488 GCAACAACACACGTGACCC 59.937 57.895 25.01 0.00 0.00 4.46
1391 4412 1.173913 GTTAGGAGGCGTGCCAATTT 58.826 50.000 14.29 0.00 38.92 1.82
1392 4413 0.328258 AGTTAGGAGGCGTGCCAATT 59.672 50.000 14.29 0.00 38.92 2.32
1394 4415 1.192146 AGAGTTAGGAGGCGTGCCAA 61.192 55.000 14.29 0.00 38.92 4.52
1427 4448 2.100023 GCATGCACGCACGCAATA 59.900 55.556 14.21 0.00 46.87 1.90
1428 4449 3.957027 CTGCATGCACGCACGCAAT 62.957 57.895 18.46 0.00 44.53 3.56
1739 4766 0.608640 GGTTGAGGTGGTCGATGTCT 59.391 55.000 0.00 0.00 0.00 3.41
2084 5117 2.281484 GCGTTGCCCTCCTTGTCA 60.281 61.111 0.00 0.00 0.00 3.58
2508 5546 4.047059 GCGTCGAACCTCGGTCCA 62.047 66.667 0.00 0.00 40.88 4.02
2644 5697 0.830444 AGGAGTACAACGGTCTGGCA 60.830 55.000 0.00 0.00 0.00 4.92
2678 5731 1.761198 GGGTAGCCTACGAACTGGAAT 59.239 52.381 2.95 0.00 0.00 3.01
2680 5733 0.040058 TGGGTAGCCTACGAACTGGA 59.960 55.000 13.11 0.00 0.00 3.86
2682 5735 2.981859 ATTGGGTAGCCTACGAACTG 57.018 50.000 13.11 0.00 0.00 3.16
2683 5736 4.468868 ACTTTATTGGGTAGCCTACGAACT 59.531 41.667 13.11 0.00 0.00 3.01
2684 5737 4.763073 ACTTTATTGGGTAGCCTACGAAC 58.237 43.478 13.11 0.00 0.00 3.95
2692 5747 5.708697 AGTGGTACAAACTTTATTGGGTAGC 59.291 40.000 0.00 0.00 44.16 3.58
2697 5752 5.391203 GCGGTAGTGGTACAAACTTTATTGG 60.391 44.000 5.84 0.00 44.16 3.16
2767 5822 5.266756 ACGAAAATCAAACGCGTACAATA 57.733 34.783 14.46 0.00 32.94 1.90
2784 5842 3.989167 CACAGGATTAACCACGTACGAAA 59.011 43.478 24.41 8.11 42.04 3.46
2794 5852 7.923414 AATCTAAGTGAACACAGGATTAACC 57.077 36.000 7.68 0.00 39.35 2.85
2850 5913 8.417273 TCGAGATTGTAACCCTATCATTATGA 57.583 34.615 0.00 0.00 0.00 2.15
2929 6008 5.447818 GCACATCAACTCGCTTTTTATAGCT 60.448 40.000 0.00 0.00 39.03 3.32
3072 6152 3.901570 TTCTATAAATGCCCTGGCCAT 57.098 42.857 5.51 0.00 41.09 4.40
3159 6239 1.601663 CGCCTTAGAAGCAGAGATCCG 60.602 57.143 0.00 0.00 0.00 4.18
3345 6425 5.730568 GCAATTCTAAGAACAATACCTGCCG 60.731 44.000 0.00 0.00 0.00 5.69
3363 6443 2.790433 TCCCTGTAGTGTTGGCAATTC 58.210 47.619 1.92 0.00 0.00 2.17
3370 6450 7.040755 TGACATGTAATTTTCCCTGTAGTGTTG 60.041 37.037 0.00 0.00 0.00 3.33
3380 6460 5.123186 TCACATCGTGACATGTAATTTTCCC 59.877 40.000 0.00 0.00 37.67 3.97
3398 6478 1.945387 ACATCGAGCCACATCACATC 58.055 50.000 0.00 0.00 0.00 3.06
3399 6479 3.198068 GTTACATCGAGCCACATCACAT 58.802 45.455 0.00 0.00 0.00 3.21
3400 6480 2.616960 GTTACATCGAGCCACATCACA 58.383 47.619 0.00 0.00 0.00 3.58
3401 6481 1.933853 GGTTACATCGAGCCACATCAC 59.066 52.381 0.00 0.00 0.00 3.06
3402 6482 1.831106 AGGTTACATCGAGCCACATCA 59.169 47.619 0.00 0.00 0.00 3.07
3403 6483 2.159099 TCAGGTTACATCGAGCCACATC 60.159 50.000 0.00 0.00 0.00 3.06
3404 6484 1.831106 TCAGGTTACATCGAGCCACAT 59.169 47.619 0.00 0.00 0.00 3.21
3420 6500 2.567985 ACCGGTGTTTTTACACTCAGG 58.432 47.619 6.12 10.85 40.28 3.86
3422 6502 4.370917 GAGTACCGGTGTTTTTACACTCA 58.629 43.478 19.93 0.00 40.28 3.41
3437 6517 1.065251 GAGGAAGTAAGCCGAGTACCG 59.935 57.143 0.00 0.00 38.18 4.02
3440 6520 2.119801 ACGAGGAAGTAAGCCGAGTA 57.880 50.000 0.00 0.00 0.00 2.59
3444 6524 2.642139 TTGTACGAGGAAGTAAGCCG 57.358 50.000 0.00 0.00 0.00 5.52
3495 6575 2.113139 CCATGCCCACGTATCCCC 59.887 66.667 0.00 0.00 0.00 4.81
3525 6605 8.647256 AAAATAATGCCCATGGATTTCAAAAA 57.353 26.923 15.22 0.00 0.00 1.94
3526 6606 8.647256 AAAAATAATGCCCATGGATTTCAAAA 57.353 26.923 15.22 0.00 0.00 2.44
3527 6607 9.917887 ATAAAAATAATGCCCATGGATTTCAAA 57.082 25.926 15.22 0.99 0.00 2.69
3564 6644 3.364889 TCCCTAACGATAAGCGACATG 57.635 47.619 0.00 0.00 44.57 3.21
3567 6647 8.524870 TTTATTAATCCCTAACGATAAGCGAC 57.475 34.615 0.00 0.00 44.57 5.19
3602 6682 5.898225 GTCGACCGGTAAAATCGATTAATC 58.102 41.667 17.01 5.30 45.72 1.75
3603 6683 5.895216 GTCGACCGGTAAAATCGATTAAT 57.105 39.130 17.01 6.35 45.72 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.