Multiple sequence alignment - TraesCS5D01G244800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G244800 chr5D 100.000 6467 0 0 1 6467 353477040 353483506 0.000000e+00 11943.0
1 TraesCS5D01G244800 chr5D 77.835 194 38 5 1078 1267 352219254 352219446 1.470000e-21 115.0
2 TraesCS5D01G244800 chr5D 76.650 197 33 10 4259 4451 14038724 14038537 5.340000e-16 97.1
3 TraesCS5D01G244800 chr5A 88.559 2290 127 56 4236 6458 454399922 454402143 0.000000e+00 2652.0
4 TraesCS5D01G244800 chr5A 84.766 1687 123 65 19 1637 454396093 454397713 0.000000e+00 1568.0
5 TraesCS5D01G244800 chr5A 86.453 812 75 22 2864 3659 454399110 454399902 0.000000e+00 857.0
6 TraesCS5D01G244800 chr5A 84.700 634 36 20 2196 2818 454398415 454398998 1.560000e-160 577.0
7 TraesCS5D01G244800 chr5A 83.574 554 36 20 1651 2195 454397802 454398309 9.820000e-128 468.0
8 TraesCS5D01G244800 chr5A 94.444 126 6 1 3685 3809 238794417 238794542 6.620000e-45 193.0
9 TraesCS5D01G244800 chr5A 91.852 135 10 1 3676 3809 16605742 16605876 3.080000e-43 187.0
10 TraesCS5D01G244800 chr5A 91.111 135 11 1 3676 3809 534913854 534913988 1.430000e-41 182.0
11 TraesCS5D01G244800 chr5A 78.238 193 39 3 1078 1267 453877106 453876914 3.170000e-23 121.0
12 TraesCS5D01G244800 chr5B 86.146 2382 168 70 7 2299 417437386 417439694 0.000000e+00 2422.0
13 TraesCS5D01G244800 chr5B 90.810 1469 69 29 4291 5750 417442264 417443675 0.000000e+00 1905.0
14 TraesCS5D01G244800 chr5B 86.158 1257 129 24 2862 4108 417440751 417441972 0.000000e+00 1315.0
15 TraesCS5D01G244800 chr5B 87.937 315 22 9 2517 2818 417440342 417440653 2.220000e-94 357.0
16 TraesCS5D01G244800 chr5B 92.821 195 8 3 5753 5945 417443736 417443926 1.780000e-70 278.0
17 TraesCS5D01G244800 chr5B 77.835 194 38 5 1078 1267 416851126 416850934 1.470000e-21 115.0
18 TraesCS5D01G244800 chrUn 93.651 126 7 1 3685 3809 159844015 159843890 3.080000e-43 187.0
19 TraesCS5D01G244800 chrUn 93.651 126 7 1 3685 3809 189389704 189389579 3.080000e-43 187.0
20 TraesCS5D01G244800 chrUn 93.651 126 7 1 3685 3809 326344322 326344447 3.080000e-43 187.0
21 TraesCS5D01G244800 chrUn 93.388 121 8 0 3807 3927 357882686 357882806 5.150000e-41 180.0
22 TraesCS5D01G244800 chrUn 93.388 121 8 0 3807 3927 430332899 430332779 5.150000e-41 180.0
23 TraesCS5D01G244800 chrUn 78.283 198 31 10 4259 4451 46172764 46172954 4.100000e-22 117.0
24 TraesCS5D01G244800 chr4D 93.651 126 7 1 3685 3809 123410067 123409942 3.080000e-43 187.0
25 TraesCS5D01G244800 chr4D 93.388 121 8 0 3807 3927 241059176 241059296 5.150000e-41 180.0
26 TraesCS5D01G244800 chr7B 94.215 121 7 0 3807 3927 33522502 33522382 1.110000e-42 185.0
27 TraesCS5D01G244800 chr7B 97.727 44 1 0 3928 3971 195245788 195245745 6.950000e-10 76.8
28 TraesCS5D01G244800 chr6B 94.215 121 7 0 3807 3927 236534618 236534738 1.110000e-42 185.0
29 TraesCS5D01G244800 chr6B 90.588 85 7 1 5943 6026 155756176 155756092 1.910000e-20 111.0
30 TraesCS5D01G244800 chr6B 82.308 130 16 4 4335 4461 129757330 129757455 8.870000e-19 106.0
31 TraesCS5D01G244800 chr6B 97.826 46 1 0 3926 3971 388162691 388162646 5.380000e-11 80.5
32 TraesCS5D01G244800 chr1B 94.215 121 7 0 3807 3927 491506494 491506374 1.110000e-42 185.0
33 TraesCS5D01G244800 chr2B 91.111 135 11 1 3676 3809 357316291 357316425 1.430000e-41 182.0
34 TraesCS5D01G244800 chr2B 80.303 198 33 6 1076 1270 601213132 601212938 1.880000e-30 145.0
35 TraesCS5D01G244800 chr2B 80.714 140 18 7 4315 4450 522203668 522203802 4.130000e-17 100.0
36 TraesCS5D01G244800 chr1D 92.857 126 8 1 3685 3809 185766640 185766515 1.430000e-41 182.0
37 TraesCS5D01G244800 chr1D 78.919 185 31 7 4259 4439 62920607 62920427 1.140000e-22 119.0
38 TraesCS5D01G244800 chr7D 93.388 121 8 0 3807 3927 578996823 578996943 5.150000e-41 180.0
39 TraesCS5D01G244800 chr7D 93.827 81 5 0 5946 6026 131468452 131468372 8.810000e-24 122.0
40 TraesCS5D01G244800 chr7D 82.114 123 11 8 4335 4452 533911569 533911685 1.920000e-15 95.3
41 TraesCS5D01G244800 chr6A 93.388 121 8 0 3807 3927 155851017 155850897 5.150000e-41 180.0
42 TraesCS5D01G244800 chr6A 89.412 85 8 1 5943 6026 97806709 97806625 8.870000e-19 106.0
43 TraesCS5D01G244800 chr4B 93.388 121 8 0 3807 3927 495531706 495531586 5.150000e-41 180.0
44 TraesCS5D01G244800 chr2D 80.597 201 33 6 1076 1273 512043240 512043043 4.040000e-32 150.0
45 TraesCS5D01G244800 chr2D 80.576 139 20 5 4315 4450 443245502 443245636 4.130000e-17 100.0
46 TraesCS5D01G244800 chr2A 80.100 201 34 6 1076 1273 655219599 655219402 1.880000e-30 145.0
47 TraesCS5D01G244800 chr2A 79.188 197 32 7 4259 4451 586897822 586897631 1.890000e-25 128.0
48 TraesCS5D01G244800 chr2A 91.463 82 6 1 5944 6024 715965682 715965601 1.910000e-20 111.0
49 TraesCS5D01G244800 chr6D 78.680 197 33 8 4259 4451 13482425 13482234 8.810000e-24 122.0
50 TraesCS5D01G244800 chr6D 89.412 85 8 1 5942 6026 174373696 174373779 8.870000e-19 106.0
51 TraesCS5D01G244800 chr4A 92.857 84 6 0 5943 6026 625404865 625404782 8.810000e-24 122.0
52 TraesCS5D01G244800 chr3D 91.892 74 4 2 1201 1273 388534334 388534262 1.150000e-17 102.0
53 TraesCS5D01G244800 chr3D 87.356 87 8 2 5947 6031 516868173 516868088 5.340000e-16 97.1
54 TraesCS5D01G244800 chr3B 87.097 93 9 3 5942 6032 591457366 591457275 1.150000e-17 102.0
55 TraesCS5D01G244800 chr3A 91.667 72 4 2 1201 1271 509798809 509798739 1.480000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G244800 chr5D 353477040 353483506 6466 False 11943.0 11943 100.0000 1 6467 1 chr5D.!!$F2 6466
1 TraesCS5D01G244800 chr5A 454396093 454402143 6050 False 1224.4 2652 85.6104 19 6458 5 chr5A.!!$F4 6439
2 TraesCS5D01G244800 chr5B 417437386 417443926 6540 False 1255.4 2422 88.7744 7 5945 5 chr5B.!!$F1 5938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 449 0.460459 TGCGTTGACGAAAGGACACA 60.460 50.0 7.85 0.0 43.02 3.72 F
1718 1937 0.533308 AGCTCGTACTCCTCGCTAGG 60.533 60.0 0.00 0.0 45.21 3.02 F
2125 2353 0.811281 GGAAAGATGACGCCCAAAGG 59.189 55.0 0.00 0.0 0.00 3.11 F
3854 4800 0.034756 TGCTAGTTCCTTTGCTGCGA 59.965 50.0 0.00 0.0 0.00 5.10 F
4071 5018 0.179067 TTTGTGTGTGACGAGGACCC 60.179 55.0 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 1991 0.109781 AAACATCCGTTCGTGCATGC 60.110 50.000 11.82 11.82 32.91 4.06 R
2553 3401 0.108615 CCTGTTCTCTAGCGTGGTGG 60.109 60.000 0.00 0.00 0.00 4.61 R
4043 4990 0.035343 TCACACACAAACCACCCGAA 60.035 50.000 0.00 0.00 0.00 4.30 R
5217 6310 1.079612 CATCAGCAGACGCAGGTCA 60.080 57.895 0.00 0.00 45.92 4.02 R
5971 7141 2.955660 CTGGGTTAGTTCAAAACTGCCA 59.044 45.455 13.45 0.00 42.84 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.572389 CCTGTATTCAGATTTGAAGGGACG 59.428 45.833 4.85 0.00 45.89 4.79
49 50 3.516615 GTCGACTGAATCTTCCAGGAAG 58.483 50.000 22.04 22.04 40.65 3.46
54 55 4.100373 ACTGAATCTTCCAGGAAGTAGCT 58.900 43.478 25.92 10.99 40.24 3.32
70 72 1.731093 GCTCCTGTAGCCGAGAGAC 59.269 63.158 0.00 0.00 46.25 3.36
80 82 3.188965 CGAGAGACGGGTCCAGAC 58.811 66.667 0.00 0.00 38.46 3.51
127 136 3.343421 GCGCCGTTTTCCGTCTGT 61.343 61.111 0.00 0.00 33.66 3.41
155 169 6.128363 CGTTGGGATTAAAGTTCAGTTAGACC 60.128 42.308 0.00 0.00 0.00 3.85
311 344 2.061773 CGAGCTCGCTTTTTCTCTGAA 58.938 47.619 25.07 0.00 0.00 3.02
379 414 4.747108 CCGACATTTCTCGAAGCATTAGAT 59.253 41.667 0.00 0.00 35.58 1.98
380 415 5.235186 CCGACATTTCTCGAAGCATTAGATT 59.765 40.000 0.00 0.00 35.58 2.40
381 416 6.420903 CCGACATTTCTCGAAGCATTAGATTA 59.579 38.462 0.00 0.00 35.58 1.75
382 417 7.358765 CCGACATTTCTCGAAGCATTAGATTAG 60.359 40.741 0.00 0.00 35.58 1.73
383 418 7.379797 CGACATTTCTCGAAGCATTAGATTAGA 59.620 37.037 0.00 0.00 35.58 2.10
414 449 0.460459 TGCGTTGACGAAAGGACACA 60.460 50.000 7.85 0.00 43.02 3.72
631 689 4.265056 AGCCCCGAAAGCAACCGT 62.265 61.111 0.00 0.00 0.00 4.83
670 741 3.316573 GACAACCCCTCGCCCTCTG 62.317 68.421 0.00 0.00 0.00 3.35
672 743 3.003763 AACCCCTCGCCCTCTGTC 61.004 66.667 0.00 0.00 0.00 3.51
676 747 2.422231 CCCTCGCCCTCTGTCTCTG 61.422 68.421 0.00 0.00 0.00 3.35
677 748 2.493973 CTCGCCCTCTGTCTCTGC 59.506 66.667 0.00 0.00 0.00 4.26
679 750 3.073735 CGCCCTCTGTCTCTGCCT 61.074 66.667 0.00 0.00 0.00 4.75
685 756 2.003658 CTCTGTCTCTGCCTCTCCGC 62.004 65.000 0.00 0.00 0.00 5.54
701 772 1.298667 CGCCCTTTATATCCCCCGG 59.701 63.158 0.00 0.00 0.00 5.73
875 946 2.811317 GAGTTCCTCACCGCGCTG 60.811 66.667 5.56 0.00 0.00 5.18
906 977 2.829003 CCGCCGTCTCCTGCTAGA 60.829 66.667 0.00 0.00 0.00 2.43
907 978 2.196925 CCGCCGTCTCCTGCTAGAT 61.197 63.158 0.00 0.00 0.00 1.98
908 979 0.889638 CCGCCGTCTCCTGCTAGATA 60.890 60.000 0.00 0.00 0.00 1.98
920 991 3.640967 CCTGCTAGATACCTCTGCTTCTT 59.359 47.826 0.00 0.00 32.66 2.52
922 993 3.181471 TGCTAGATACCTCTGCTTCTTGC 60.181 47.826 0.00 0.00 43.25 4.01
934 1042 6.589523 CCTCTGCTTCTTGCTCATATACATAC 59.410 42.308 0.00 0.00 43.37 2.39
939 1047 8.588472 TGCTTCTTGCTCATATACATACATACT 58.412 33.333 0.00 0.00 43.37 2.12
972 1080 7.675962 ATTAGTATTAGGTAGAGAGACAGCG 57.324 40.000 0.00 0.00 0.00 5.18
977 1085 3.290948 AGGTAGAGAGACAGCGATCTT 57.709 47.619 0.00 0.00 0.00 2.40
1035 1149 2.752358 CAGCAGCAGAAGGGTGGA 59.248 61.111 0.00 0.00 45.14 4.02
1036 1150 1.073722 CAGCAGCAGAAGGGTGGAA 59.926 57.895 0.00 0.00 45.14 3.53
1044 1158 1.603739 GAAGGGTGGAAGTGGTGGC 60.604 63.158 0.00 0.00 0.00 5.01
1191 1305 4.020617 TGGAAGCCGGTGGAGCTG 62.021 66.667 1.90 0.00 40.49 4.24
1272 1386 2.729156 GCTCAACACCTACGTACGTACC 60.729 54.545 23.60 2.84 0.00 3.34
1273 1387 2.483877 CTCAACACCTACGTACGTACCA 59.516 50.000 23.60 6.61 0.00 3.25
1275 1389 2.185004 ACACCTACGTACGTACCACT 57.815 50.000 23.60 1.21 0.00 4.00
1277 1391 2.289694 ACACCTACGTACGTACCACTCT 60.290 50.000 23.60 0.00 0.00 3.24
1280 1394 3.265791 CCTACGTACGTACCACTCTCTT 58.734 50.000 23.60 0.00 0.00 2.85
1307 1447 7.202047 CCTCTACCTCTGCCTTCACTAAATTAT 60.202 40.741 0.00 0.00 0.00 1.28
1308 1448 8.090788 TCTACCTCTGCCTTCACTAAATTATT 57.909 34.615 0.00 0.00 0.00 1.40
1309 1449 9.209048 TCTACCTCTGCCTTCACTAAATTATTA 57.791 33.333 0.00 0.00 0.00 0.98
1329 1472 1.283347 ATCACTCCCATCTGCACTGT 58.717 50.000 0.00 0.00 0.00 3.55
1337 1480 2.079158 CCATCTGCACTGTTCAACGAT 58.921 47.619 0.00 0.00 0.00 3.73
1338 1481 2.094894 CCATCTGCACTGTTCAACGATC 59.905 50.000 0.00 0.00 0.00 3.69
1339 1482 1.418373 TCTGCACTGTTCAACGATCG 58.582 50.000 14.88 14.88 0.00 3.69
1353 1496 2.614779 ACGATCGACGACTTGAGTAGA 58.385 47.619 24.34 0.00 45.77 2.59
1354 1497 2.348059 ACGATCGACGACTTGAGTAGAC 59.652 50.000 24.34 0.00 45.77 2.59
1355 1498 2.604011 CGATCGACGACTTGAGTAGACT 59.396 50.000 10.26 0.00 45.77 3.24
1356 1499 3.795639 CGATCGACGACTTGAGTAGACTA 59.204 47.826 10.26 0.00 45.77 2.59
1357 1500 4.317278 CGATCGACGACTTGAGTAGACTAC 60.317 50.000 10.26 4.32 45.77 2.73
1358 1501 4.185467 TCGACGACTTGAGTAGACTACT 57.815 45.455 15.13 15.13 42.86 2.57
1359 1502 5.316327 TCGACGACTTGAGTAGACTACTA 57.684 43.478 15.18 0.11 39.59 1.82
1360 1503 5.900425 TCGACGACTTGAGTAGACTACTAT 58.100 41.667 15.18 1.91 39.59 2.12
1361 1504 7.032377 TCGACGACTTGAGTAGACTACTATA 57.968 40.000 15.18 5.17 39.59 1.31
1362 1505 7.138081 TCGACGACTTGAGTAGACTACTATAG 58.862 42.308 15.18 15.95 39.59 1.31
1363 1506 6.129115 CGACGACTTGAGTAGACTACTATAGC 60.129 46.154 15.18 3.83 39.59 2.97
1364 1507 6.580788 ACGACTTGAGTAGACTACTATAGCA 58.419 40.000 15.18 6.41 39.59 3.49
1365 1508 6.702723 ACGACTTGAGTAGACTACTATAGCAG 59.297 42.308 15.18 13.33 39.59 4.24
1366 1509 6.146510 CGACTTGAGTAGACTACTATAGCAGG 59.853 46.154 15.18 11.32 39.59 4.85
1367 1510 6.902408 ACTTGAGTAGACTACTATAGCAGGT 58.098 40.000 15.18 11.89 39.59 4.00
1368 1511 8.032045 ACTTGAGTAGACTACTATAGCAGGTA 57.968 38.462 15.18 0.00 39.59 3.08
1369 1512 8.152246 ACTTGAGTAGACTACTATAGCAGGTAG 58.848 40.741 15.18 6.45 39.59 3.18
1370 1513 7.852550 TGAGTAGACTACTATAGCAGGTAGA 57.147 40.000 15.18 0.00 39.59 2.59
1371 1514 7.898918 TGAGTAGACTACTATAGCAGGTAGAG 58.101 42.308 15.18 0.00 39.59 2.43
1372 1515 7.510001 TGAGTAGACTACTATAGCAGGTAGAGT 59.490 40.741 15.18 11.51 39.59 3.24
1373 1516 8.954834 AGTAGACTACTATAGCAGGTAGAGTA 57.045 38.462 13.63 12.45 38.82 2.59
1381 1524 7.107542 ACTATAGCAGGTAGAGTAGAGTATGC 58.892 42.308 5.08 0.00 31.07 3.14
1448 1593 3.472283 AAGTATCTCGCTCGTCCTCTA 57.528 47.619 0.00 0.00 0.00 2.43
1460 1605 4.577283 GCTCGTCCTCTAAGAGTGATTAGT 59.423 45.833 0.00 0.00 36.23 2.24
1581 1726 2.815647 CCACGGAAAGCTCTCGGC 60.816 66.667 7.92 0.00 42.19 5.54
1589 1734 0.537653 AAAGCTCTCGGCCCTTCTAC 59.462 55.000 0.00 0.00 43.05 2.59
1623 1768 3.484649 CACACGACATATTAGTGCGTACC 59.515 47.826 0.00 0.00 39.31 3.34
1646 1791 2.144730 CGCTATCGTAGTAGGAGCACT 58.855 52.381 0.00 0.00 32.55 4.40
1648 1793 3.744942 CGCTATCGTAGTAGGAGCACTTA 59.255 47.826 0.00 0.00 32.55 2.24
1694 1913 1.654023 CGGTGGATTCTTTTCCGGCC 61.654 60.000 0.00 0.00 38.74 6.13
1707 1926 2.202756 CGGCCAGGAAGCTCGTAC 60.203 66.667 2.24 0.00 0.00 3.67
1709 1928 1.142097 GGCCAGGAAGCTCGTACTC 59.858 63.158 0.00 0.00 0.00 2.59
1710 1929 1.142097 GCCAGGAAGCTCGTACTCC 59.858 63.158 0.00 0.00 0.00 3.85
1716 1935 1.297664 GAAGCTCGTACTCCTCGCTA 58.702 55.000 0.00 0.00 0.00 4.26
1718 1937 0.533308 AGCTCGTACTCCTCGCTAGG 60.533 60.000 0.00 0.00 45.21 3.02
1736 1962 6.043706 TCGCTAGGGGTAGTAGTAAGAACTAT 59.956 42.308 6.99 0.00 40.30 2.12
1737 1963 6.714356 CGCTAGGGGTAGTAGTAAGAACTATT 59.286 42.308 0.00 0.00 40.30 1.73
1765 1991 2.125673 CCGAGGTAAGGCACGTGG 60.126 66.667 18.88 0.00 0.00 4.94
1829 2055 2.108514 CGGCCGTACACGTCCTAGA 61.109 63.158 19.50 0.00 34.87 2.43
1837 2063 3.564644 CGTACACGTCCTAGAATGGATCT 59.435 47.826 0.00 0.00 38.52 2.75
1871 2097 4.465512 GCCAGCGCACATGTTCCG 62.466 66.667 11.47 10.47 34.03 4.30
1891 2117 4.754667 GTTCGCGGTGGGGTCTCC 62.755 72.222 6.13 0.00 0.00 3.71
1905 2131 2.499732 CTCCGTTCAAAAGCGCGC 60.500 61.111 26.66 26.66 0.00 6.86
1920 2146 3.283684 CGCGTGGACTTTGGGCAA 61.284 61.111 0.00 0.00 0.00 4.52
1963 2189 9.621629 ATCTCGAGCTAGCTAATTACATATACT 57.378 33.333 19.38 0.00 0.00 2.12
1964 2190 9.100554 TCTCGAGCTAGCTAATTACATATACTC 57.899 37.037 19.38 0.00 0.00 2.59
1965 2191 8.211116 TCGAGCTAGCTAATTACATATACTCC 57.789 38.462 19.38 0.00 0.00 3.85
1966 2192 8.047911 TCGAGCTAGCTAATTACATATACTCCT 58.952 37.037 19.38 0.00 0.00 3.69
1967 2193 9.327628 CGAGCTAGCTAATTACATATACTCCTA 57.672 37.037 19.38 0.00 0.00 2.94
1996 2222 2.359531 TGTTTGTTGGACGGACAAATCC 59.640 45.455 5.80 0.00 45.49 3.01
2125 2353 0.811281 GGAAAGATGACGCCCAAAGG 59.189 55.000 0.00 0.00 0.00 3.11
2260 2594 4.611366 GTGACAACAAAATTAGCTACGTGC 59.389 41.667 0.00 0.00 43.29 5.34
2300 2634 5.660460 AGTCAACAAACCATTTCAGTTTCC 58.340 37.500 0.00 0.00 35.28 3.13
2301 2635 4.808895 GTCAACAAACCATTTCAGTTTCCC 59.191 41.667 0.00 0.00 35.28 3.97
2303 2637 4.400529 ACAAACCATTTCAGTTTCCCAC 57.599 40.909 0.00 0.00 35.28 4.61
2304 2638 3.181480 ACAAACCATTTCAGTTTCCCACG 60.181 43.478 0.00 0.00 35.28 4.94
2305 2639 0.958822 ACCATTTCAGTTTCCCACGC 59.041 50.000 0.00 0.00 0.00 5.34
2306 2640 1.247567 CCATTTCAGTTTCCCACGCT 58.752 50.000 0.00 0.00 0.00 5.07
2307 2641 1.613437 CCATTTCAGTTTCCCACGCTT 59.387 47.619 0.00 0.00 0.00 4.68
2308 2642 2.607771 CCATTTCAGTTTCCCACGCTTG 60.608 50.000 0.00 0.00 0.00 4.01
2309 2643 2.045561 TTTCAGTTTCCCACGCTTGA 57.954 45.000 0.00 0.00 0.00 3.02
2310 2644 1.593196 TTCAGTTTCCCACGCTTGAG 58.407 50.000 0.00 0.00 0.00 3.02
2311 2645 0.884704 TCAGTTTCCCACGCTTGAGC 60.885 55.000 0.00 0.00 37.78 4.26
2337 2671 2.033550 ACGCTTGGACATTAACGCAAAA 59.966 40.909 0.00 0.00 0.00 2.44
2339 2673 3.672867 CGCTTGGACATTAACGCAAAAAT 59.327 39.130 0.00 0.00 0.00 1.82
2344 2678 8.227119 GCTTGGACATTAACGCAAAAATAAAAT 58.773 29.630 0.00 0.00 0.00 1.82
2434 2769 1.319541 ACGTGACTAGTGCTGAGTGT 58.680 50.000 0.00 0.00 0.00 3.55
2435 2770 1.267261 ACGTGACTAGTGCTGAGTGTC 59.733 52.381 0.00 0.00 0.00 3.67
2445 2780 1.508545 CTGAGTGTCGATGTCGCCT 59.491 57.895 0.00 0.00 39.60 5.52
2448 2783 1.134530 GAGTGTCGATGTCGCCTTCG 61.135 60.000 0.00 0.00 39.03 3.79
2449 2784 2.506217 TGTCGATGTCGCCTTCGC 60.506 61.111 0.00 0.00 37.95 4.70
2450 2785 3.255379 GTCGATGTCGCCTTCGCC 61.255 66.667 0.00 0.00 37.95 5.54
2453 3301 2.517450 CGATGTCGCCTTCGCCTTC 61.517 63.158 0.00 0.00 32.48 3.46
2459 3307 3.500642 GCCTTCGCCTTCGCCTTC 61.501 66.667 0.00 0.00 35.26 3.46
2487 3335 2.490115 TGACAAAATGTGGCCGGTTATC 59.510 45.455 1.90 0.00 32.17 1.75
2505 3353 2.834043 TGGACGTGACGGTCACCA 60.834 61.111 29.76 21.55 44.20 4.17
2506 3354 2.358193 CTGGACGTGACGGTCACCAA 62.358 60.000 29.76 13.52 44.20 3.67
2514 3362 3.676598 CGTGACGGTCACCAAATACCATA 60.677 47.826 29.76 0.00 44.20 2.74
2526 3374 6.310956 CACCAAATACCATAAGTGTGCAAATG 59.689 38.462 0.00 0.00 0.00 2.32
2541 3389 2.223044 GCAAATGATCGAAAGGACGGAC 60.223 50.000 0.00 0.00 0.00 4.79
2609 3466 0.692476 TAGTGCTTGCCCATCACTGT 59.308 50.000 11.49 0.00 40.80 3.55
2665 3522 0.460284 CGTCCTCGGTCCTCATTTGG 60.460 60.000 0.00 0.00 0.00 3.28
2681 3538 0.687098 TTGGGATTACGCGGGGACTA 60.687 55.000 12.47 0.00 0.00 2.59
2737 3594 4.654262 TGTGTCCTCTTCTGGAAACTACTT 59.346 41.667 5.58 0.00 43.16 2.24
2836 3738 8.034804 AGGTTCTTAAAATTCATTACATGCACC 58.965 33.333 0.00 0.00 0.00 5.01
2855 3757 5.360429 TGCACCTATACAATGCACATTCATT 59.640 36.000 0.00 0.00 44.17 2.57
2856 3758 5.916883 GCACCTATACAATGCACATTCATTC 59.083 40.000 0.00 0.00 39.23 2.67
2857 3759 6.459985 GCACCTATACAATGCACATTCATTCA 60.460 38.462 0.00 0.00 39.23 2.57
2858 3760 7.654568 CACCTATACAATGCACATTCATTCAT 58.345 34.615 0.00 0.00 34.68 2.57
2859 3761 7.806487 CACCTATACAATGCACATTCATTCATC 59.194 37.037 0.00 0.00 34.68 2.92
2861 3763 8.520351 CCTATACAATGCACATTCATTCATCAT 58.480 33.333 0.00 0.00 34.68 2.45
2864 3766 7.342769 ACAATGCACATTCATTCATCATAGT 57.657 32.000 0.00 0.00 34.68 2.12
2865 3767 7.200455 ACAATGCACATTCATTCATCATAGTG 58.800 34.615 0.00 0.00 34.68 2.74
2866 3768 7.067737 ACAATGCACATTCATTCATCATAGTGA 59.932 33.333 0.00 0.00 34.68 3.41
2869 3796 8.002984 TGCACATTCATTCATCATAGTGAAAT 57.997 30.769 0.00 0.00 41.09 2.17
2871 3798 9.390795 GCACATTCATTCATCATAGTGAAATAC 57.609 33.333 0.00 0.00 41.09 1.89
2888 3815 8.031277 AGTGAAATACAATCTTCAATGAAAGGC 58.969 33.333 0.00 0.00 33.52 4.35
3005 3935 5.417266 TGCAAATCGAATTGGAAATCCTACA 59.583 36.000 14.76 0.00 36.82 2.74
3011 3941 7.141100 TCGAATTGGAAATCCTACAGAAAAC 57.859 36.000 0.44 0.00 36.82 2.43
3012 3942 6.712998 TCGAATTGGAAATCCTACAGAAAACA 59.287 34.615 0.44 0.00 36.82 2.83
3075 4005 2.376808 AAGTGGACGATGCTTCAGAG 57.623 50.000 0.08 0.00 0.00 3.35
3088 4018 3.015327 GCTTCAGAGAGCATGGTCAATT 58.985 45.455 25.71 6.26 42.25 2.32
3135 4065 9.824534 AATCGTCAAAATGGCAAAATATTTTTC 57.175 25.926 10.77 6.37 35.07 2.29
3138 4068 7.312154 GTCAAAATGGCAAAATATTTTTCCCC 58.688 34.615 21.96 16.68 35.07 4.81
3163 4093 5.545658 AACATAGTCAAAGTTGCATACGG 57.454 39.130 0.00 0.00 0.00 4.02
3188 4118 4.003648 AGGTTGTCCGAAAGAACATCATC 58.996 43.478 0.00 0.00 39.05 2.92
3221 4158 7.764443 TGCTGTAGGATTCAGTAAGTCATAAAC 59.236 37.037 0.00 0.00 35.60 2.01
3222 4159 7.043325 GCTGTAGGATTCAGTAAGTCATAAACG 60.043 40.741 0.00 0.00 35.60 3.60
3320 4258 8.319146 TCCCGACTAAAAGAAGATAACAGAAAT 58.681 33.333 0.00 0.00 0.00 2.17
3361 4299 4.896562 TGTTCTCGCTTAATGTGTTACG 57.103 40.909 0.00 0.00 0.00 3.18
3377 4315 9.517609 AATGTGTTACGTTACTAAATTGCAAAA 57.482 25.926 1.71 0.00 0.00 2.44
3378 4316 8.906636 TGTGTTACGTTACTAAATTGCAAAAA 57.093 26.923 1.71 0.00 0.00 1.94
3480 4418 8.768501 TCTCTCCTACAATATGTAGTCAATGT 57.231 34.615 14.51 0.00 46.68 2.71
3510 4448 5.973899 ATCATAGATCATACACGAGTGCT 57.026 39.130 2.76 0.00 0.00 4.40
3549 4487 3.820689 TGATGTCTATTTTGCGCAACAC 58.179 40.909 24.99 14.39 0.00 3.32
3627 4569 8.842358 AAGTATATTTTTCGTCCTGAACTCAA 57.158 30.769 0.00 0.00 35.97 3.02
3635 4577 5.524971 TCGTCCTGAACTCAAGAAAGTTA 57.475 39.130 0.00 0.00 39.55 2.24
3659 4604 2.415697 AACGTTCAAATCCAAAGCCG 57.584 45.000 0.00 0.00 0.00 5.52
3673 4618 3.119955 CCAAAGCCGCTAAAACTTAGTCC 60.120 47.826 0.00 0.00 0.00 3.85
3693 4638 6.890293 AGTCCCTCAACTAATATTCCTTCAC 58.110 40.000 0.00 0.00 0.00 3.18
3699 4644 4.957684 ACTAATATTCCTTCACGGGGAG 57.042 45.455 0.00 0.00 34.06 4.30
3710 4655 3.470888 CGGGGAGCTTGACCGGAT 61.471 66.667 9.46 0.00 43.69 4.18
3712 4657 2.670148 GGGGAGCTTGACCGGATGT 61.670 63.158 9.46 0.00 0.00 3.06
3713 4658 1.335132 GGGGAGCTTGACCGGATGTA 61.335 60.000 9.46 0.00 0.00 2.29
3768 4714 9.377312 AGATAAACTTCAAATCTTCTAGTCTGC 57.623 33.333 0.00 0.00 0.00 4.26
3776 4722 2.621070 TCTTCTAGTCTGCCCCAACTT 58.379 47.619 0.00 0.00 0.00 2.66
3786 4732 1.460273 GCCCCAACTTTTTCGAGCCA 61.460 55.000 0.00 0.00 0.00 4.75
3801 4747 1.374758 GCCACTCTCCCAGTCAACG 60.375 63.158 0.00 0.00 30.26 4.10
3809 4755 1.264288 CTCCCAGTCAACGTTCAAAGC 59.736 52.381 0.00 0.00 0.00 3.51
3826 4772 0.607489 AGCAAGAACGATGGCAAGCT 60.607 50.000 0.00 0.00 0.00 3.74
3853 4799 0.166814 GTGCTAGTTCCTTTGCTGCG 59.833 55.000 0.00 0.00 0.00 5.18
3854 4800 0.034756 TGCTAGTTCCTTTGCTGCGA 59.965 50.000 0.00 0.00 0.00 5.10
3855 4801 1.156736 GCTAGTTCCTTTGCTGCGAA 58.843 50.000 1.77 1.77 0.00 4.70
3856 4802 1.135944 GCTAGTTCCTTTGCTGCGAAC 60.136 52.381 9.27 9.27 36.88 3.95
3861 4807 2.252260 CTTTGCTGCGAACGGGTG 59.748 61.111 0.00 0.00 0.00 4.61
3864 4810 4.680237 TGCTGCGAACGGGTGGAG 62.680 66.667 0.00 0.00 0.00 3.86
3865 4811 4.681978 GCTGCGAACGGGTGGAGT 62.682 66.667 0.00 0.00 0.00 3.85
3872 4818 1.738030 CGAACGGGTGGAGTTGGTATC 60.738 57.143 0.00 0.00 31.14 2.24
3897 4843 7.044798 CCCCAAATTGTTGTTCTCTTAAAACA 58.955 34.615 0.00 0.00 34.93 2.83
3899 4845 8.764287 CCCAAATTGTTGTTCTCTTAAAACATC 58.236 33.333 0.00 0.00 36.57 3.06
3909 4855 3.430453 TCTTAAAACATCTGGCAAGGGG 58.570 45.455 0.00 0.00 0.00 4.79
3913 4859 1.729267 AACATCTGGCAAGGGGGTGT 61.729 55.000 0.00 0.00 0.00 4.16
3914 4860 1.679977 CATCTGGCAAGGGGGTGTG 60.680 63.158 0.00 0.00 0.00 3.82
3915 4861 2.162906 ATCTGGCAAGGGGGTGTGT 61.163 57.895 0.00 0.00 0.00 3.72
3937 4883 7.147620 TGTGTAAGAGTTCAAGGTCCTTTCTAA 60.148 37.037 0.00 0.00 0.00 2.10
3953 4899 4.844349 TTCTAAAGGCAGGCATTAGACT 57.156 40.909 18.46 0.00 35.88 3.24
3955 4901 5.537300 TCTAAAGGCAGGCATTAGACTAG 57.463 43.478 15.64 4.04 32.30 2.57
3962 4908 3.799420 GCAGGCATTAGACTAGAGTTTCG 59.201 47.826 0.00 0.00 0.00 3.46
3970 4916 0.526662 ACTAGAGTTTCGTGAGCCGG 59.473 55.000 0.00 0.00 37.11 6.13
3971 4917 0.179134 CTAGAGTTTCGTGAGCCGGG 60.179 60.000 2.18 0.00 37.11 5.73
3972 4918 0.896940 TAGAGTTTCGTGAGCCGGGT 60.897 55.000 5.45 5.45 37.11 5.28
3974 4920 1.566018 GAGTTTCGTGAGCCGGGTTG 61.566 60.000 8.00 0.72 37.11 3.77
3975 4921 1.890510 GTTTCGTGAGCCGGGTTGT 60.891 57.895 8.00 0.00 37.11 3.32
3976 4922 1.595929 TTTCGTGAGCCGGGTTGTC 60.596 57.895 8.00 0.00 37.11 3.18
3978 4924 2.709125 TTCGTGAGCCGGGTTGTCTG 62.709 60.000 8.00 0.00 37.11 3.51
3979 4925 2.426023 GTGAGCCGGGTTGTCTGT 59.574 61.111 8.00 0.00 0.00 3.41
4000 4947 2.939756 TCTTTTTGTAGTGCGCAAGTCA 59.060 40.909 14.00 8.75 41.68 3.41
4006 4953 0.667487 TAGTGCGCAAGTCAGAGTGC 60.667 55.000 14.00 0.00 41.40 4.40
4011 4958 0.940126 CGCAAGTCAGAGTGCACTTT 59.060 50.000 22.65 13.35 40.94 2.66
4018 4965 4.523083 AGTCAGAGTGCACTTTAAAACCA 58.477 39.130 22.65 0.00 0.00 3.67
4027 4974 7.649057 AGTGCACTTTAAAACCAGATAAGTTC 58.351 34.615 15.25 0.00 0.00 3.01
4029 4976 6.547880 TGCACTTTAAAACCAGATAAGTTCCA 59.452 34.615 0.00 0.00 0.00 3.53
4035 4982 4.510167 AACCAGATAAGTTCCATCCCTG 57.490 45.455 0.00 0.00 0.00 4.45
4036 4983 3.736094 ACCAGATAAGTTCCATCCCTGA 58.264 45.455 0.00 0.00 0.00 3.86
4040 4987 6.389869 ACCAGATAAGTTCCATCCCTGATAAA 59.610 38.462 0.00 0.00 0.00 1.40
4043 4990 4.870021 AAGTTCCATCCCTGATAAAGCT 57.130 40.909 0.00 0.00 0.00 3.74
4044 4991 4.870021 AGTTCCATCCCTGATAAAGCTT 57.130 40.909 0.00 0.00 0.00 3.74
4045 4992 4.786425 AGTTCCATCCCTGATAAAGCTTC 58.214 43.478 0.00 0.00 0.00 3.86
4046 4993 3.475566 TCCATCCCTGATAAAGCTTCG 57.524 47.619 0.00 0.00 0.00 3.79
4065 5012 0.745128 GGGTGGTTTGTGTGTGACGA 60.745 55.000 0.00 0.00 0.00 4.20
4071 5018 0.179067 TTTGTGTGTGACGAGGACCC 60.179 55.000 0.00 0.00 0.00 4.46
4075 5022 1.973281 GTGTGACGAGGACCCGGTA 60.973 63.158 0.00 0.00 0.00 4.02
4083 5030 2.026641 CGAGGACCCGGTATTGACTAA 58.973 52.381 0.00 0.00 0.00 2.24
4090 5037 4.648651 ACCCGGTATTGACTAATATTGGC 58.351 43.478 0.00 0.00 31.81 4.52
4093 5040 4.454504 CCGGTATTGACTAATATTGGCCAC 59.545 45.833 3.88 0.00 31.81 5.01
4108 5055 1.826054 CCACGTGGCCTGGTTTTGA 60.826 57.895 24.02 0.00 0.00 2.69
4116 5093 1.613520 GGCCTGGTTTTGACCTCTACC 60.614 57.143 0.00 0.00 0.00 3.18
4117 5094 1.351350 GCCTGGTTTTGACCTCTACCT 59.649 52.381 0.00 0.00 0.00 3.08
4121 5098 1.613520 GGTTTTGACCTCTACCTGGGC 60.614 57.143 0.00 0.00 0.00 5.36
4129 5106 2.017559 CTCTACCTGGGCCGTAGCAC 62.018 65.000 12.29 0.00 45.43 4.40
4137 5114 4.151582 GCCGTAGCACGCCCCTTA 62.152 66.667 3.56 0.00 40.91 2.69
4148 5125 1.147153 GCCCCTTAGTGCTAGCCAG 59.853 63.158 13.29 2.84 0.00 4.85
4188 5165 2.767960 TGTTTAGGGTTCGTAGGGGATC 59.232 50.000 0.00 0.00 0.00 3.36
4191 5168 0.187851 AGGGTTCGTAGGGGATCGAT 59.812 55.000 0.00 0.00 36.01 3.59
4192 5169 1.426598 AGGGTTCGTAGGGGATCGATA 59.573 52.381 0.00 0.00 36.01 2.92
4216 5193 1.609501 TGGGACAGGGAGAGAACGG 60.610 63.158 0.00 0.00 0.00 4.44
4217 5194 2.579738 GGACAGGGAGAGAACGGC 59.420 66.667 0.00 0.00 0.00 5.68
4233 5210 2.035626 GCAAGGTGCCCTTAGCCA 59.964 61.111 6.20 0.00 42.67 4.75
4234 5211 2.048603 GCAAGGTGCCCTTAGCCAG 61.049 63.158 6.20 0.00 42.67 4.85
4261 5238 0.999406 CTTAAGTGATGTGGCGGTCG 59.001 55.000 0.00 0.00 0.00 4.79
4275 5252 2.112297 GTCGAAACCAGGCCACCA 59.888 61.111 5.01 0.00 0.00 4.17
4294 5271 6.924111 CCACCATGGCCAATATTAGTAAATC 58.076 40.000 10.96 0.00 0.00 2.17
4298 5365 5.570205 TGGCCAATATTAGTAAATCCCGA 57.430 39.130 0.61 0.00 0.00 5.14
4301 5368 5.411669 GGCCAATATTAGTAAATCCCGAGTG 59.588 44.000 0.00 0.00 0.00 3.51
4320 5387 2.728132 CATGTCATGCGCAAACCAC 58.272 52.632 17.11 9.37 0.00 4.16
4322 5389 0.895100 ATGTCATGCGCAAACCACCT 60.895 50.000 17.11 0.00 0.00 4.00
4346 5413 3.934457 AAGTTATTGGGCCGAAACTTG 57.066 42.857 22.36 0.00 39.89 3.16
4439 5507 5.001232 TCGAGAATTCAGGGACGAAAAATT 58.999 37.500 8.44 0.00 0.00 1.82
4440 5508 6.167685 TCGAGAATTCAGGGACGAAAAATTA 58.832 36.000 8.44 0.00 0.00 1.40
4441 5509 6.821665 TCGAGAATTCAGGGACGAAAAATTAT 59.178 34.615 8.44 0.00 0.00 1.28
4442 5510 6.907212 CGAGAATTCAGGGACGAAAAATTATG 59.093 38.462 8.44 0.00 0.00 1.90
4443 5511 6.564328 AGAATTCAGGGACGAAAAATTATGC 58.436 36.000 8.44 0.00 0.00 3.14
4444 5512 6.378280 AGAATTCAGGGACGAAAAATTATGCT 59.622 34.615 8.44 0.00 0.00 3.79
4445 5513 5.975693 TTCAGGGACGAAAAATTATGCTT 57.024 34.783 0.00 0.00 0.00 3.91
4446 5514 7.639113 ATTCAGGGACGAAAAATTATGCTTA 57.361 32.000 0.00 0.00 0.00 3.09
4447 5515 7.639113 TTCAGGGACGAAAAATTATGCTTAT 57.361 32.000 0.00 0.00 0.00 1.73
4448 5516 7.259290 TCAGGGACGAAAAATTATGCTTATC 57.741 36.000 0.00 0.00 0.00 1.75
4449 5517 6.262273 TCAGGGACGAAAAATTATGCTTATCC 59.738 38.462 0.00 0.00 0.00 2.59
4450 5518 5.535030 AGGGACGAAAAATTATGCTTATCCC 59.465 40.000 0.00 0.00 42.10 3.85
4451 5519 5.300792 GGGACGAAAAATTATGCTTATCCCA 59.699 40.000 0.00 0.00 41.52 4.37
4530 5600 9.023962 GTAAGATATAAATTGATGATGCCCCAA 57.976 33.333 0.00 0.00 0.00 4.12
4535 5605 1.971481 TTGATGATGCCCCAATCTCG 58.029 50.000 0.00 0.00 0.00 4.04
4560 5630 7.962918 CGTAGGAATCAGTGAACCAAAATTAAG 59.037 37.037 17.88 4.50 0.00 1.85
4599 5669 7.262048 GCTAATGAGCTAGTAATGATACTCCC 58.738 42.308 0.00 0.00 45.98 4.30
4642 5713 1.183549 ACGGACAGTAGATGACACCC 58.816 55.000 0.00 0.00 0.00 4.61
4649 5720 3.574396 ACAGTAGATGACACCCGGATATG 59.426 47.826 0.73 0.00 0.00 1.78
4774 5862 5.221880 TGTTTGAAAATGCTTCTTGATCGG 58.778 37.500 0.00 0.00 0.00 4.18
4799 5889 2.272678 TGTATGGAAATGTACCGCGTG 58.727 47.619 4.92 0.00 0.00 5.34
4839 5929 5.007332 CGGTGTAAACTATATGCAGGGTTTC 59.993 44.000 10.74 6.08 34.40 2.78
4959 6052 2.037527 ACGACTCCCCAGTCCTCC 59.962 66.667 0.00 0.00 45.81 4.30
5217 6310 4.379243 CTGGACGTCCGCCAGCTT 62.379 66.667 28.70 0.00 45.66 3.74
5256 6355 2.393768 CGAAGACATGCAAGGCGCT 61.394 57.895 7.64 0.00 43.06 5.92
5323 6422 2.664851 TGAAGCTGTTCGGCGTGG 60.665 61.111 6.85 0.00 35.17 4.94
5616 6715 2.414029 CCCATTCCATCAACGTTGTTCG 60.414 50.000 26.47 12.45 46.00 3.95
5766 6934 0.605589 AAGCTCTCCTCCTTGTCGTG 59.394 55.000 0.00 0.00 0.00 4.35
5787 6955 5.465390 CGTGGATCCGATTACACACATAAAT 59.535 40.000 7.39 0.00 33.62 1.40
5799 6967 5.900425 ACACACATAAATGTTTGCAGAACA 58.100 33.333 14.09 14.09 41.00 3.18
5917 7087 7.688918 ACTGATATTCTTTCTCTCCTCCATT 57.311 36.000 0.00 0.00 0.00 3.16
5918 7088 8.100135 ACTGATATTCTTTCTCTCCTCCATTT 57.900 34.615 0.00 0.00 0.00 2.32
5919 7089 9.218525 ACTGATATTCTTTCTCTCCTCCATTTA 57.781 33.333 0.00 0.00 0.00 1.40
5951 7121 9.032420 GTCCAGTTGCAAGAATTATAGTACTAC 57.968 37.037 4.31 0.00 0.00 2.73
5955 7125 9.203163 AGTTGCAAGAATTATAGTACTACCTCT 57.797 33.333 4.31 2.27 0.00 3.69
5971 7141 9.080097 GTACTACCTCTGATCCATAATAAGTGT 57.920 37.037 0.00 0.00 0.00 3.55
5981 7151 6.266168 TCCATAATAAGTGTGGCAGTTTTG 57.734 37.500 0.00 0.00 33.01 2.44
5984 7154 6.586082 CCATAATAAGTGTGGCAGTTTTGAAC 59.414 38.462 0.00 0.00 0.00 3.18
5985 7155 5.852282 AATAAGTGTGGCAGTTTTGAACT 57.148 34.783 0.00 0.00 44.06 3.01
6020 7216 4.946784 ACTGCGACAGTTATTTTGGATC 57.053 40.909 6.67 0.00 42.59 3.36
6026 7222 3.279434 ACAGTTATTTTGGATCGGAGGC 58.721 45.455 0.00 0.00 0.00 4.70
6028 7224 3.065371 CAGTTATTTTGGATCGGAGGCAC 59.935 47.826 0.00 0.00 0.00 5.01
6045 7241 2.678336 GGCACTACCTTTCTTCGAATGG 59.322 50.000 0.00 1.74 34.51 3.16
6046 7242 3.596214 GCACTACCTTTCTTCGAATGGA 58.404 45.455 13.46 0.00 0.00 3.41
6078 7274 6.154534 AGTTTAACCTTGAAAGTGAAAAGGCT 59.845 34.615 0.62 0.00 43.62 4.58
6082 7278 3.225940 CTTGAAAGTGAAAAGGCTCCCT 58.774 45.455 0.00 0.00 33.87 4.20
6085 7281 3.650942 TGAAAGTGAAAAGGCTCCCTCTA 59.349 43.478 0.00 0.00 30.89 2.43
6089 7285 2.567615 GTGAAAAGGCTCCCTCTACTCA 59.432 50.000 0.00 0.00 30.89 3.41
6110 7306 7.366847 CTCAGTAGGAGGAGATGGATAAAAA 57.633 40.000 0.00 0.00 40.13 1.94
6155 7356 7.201688 GGGAGATGCATAAAAGAAGAAACTCTC 60.202 40.741 0.00 0.00 0.00 3.20
6195 7397 2.442413 GTCTGAGACTGTAGAGGCTGT 58.558 52.381 0.00 0.00 37.88 4.40
6214 7416 1.683385 GTGGCCCATTAAGAGCATTCC 59.317 52.381 0.00 0.00 0.00 3.01
6228 7430 1.338973 GCATTCCAACCGATGATGCAT 59.661 47.619 0.00 0.00 38.49 3.96
6274 7477 4.195416 GGCATGAGAGAGAAGGTTTTAGG 58.805 47.826 0.00 0.00 0.00 2.69
6283 7486 5.033522 AGAGAAGGTTTTAGGGCAGTAGAT 58.966 41.667 0.00 0.00 0.00 1.98
6284 7487 5.489278 AGAGAAGGTTTTAGGGCAGTAGATT 59.511 40.000 0.00 0.00 0.00 2.40
6285 7488 6.012421 AGAGAAGGTTTTAGGGCAGTAGATTT 60.012 38.462 0.00 0.00 0.00 2.17
6286 7489 6.552932 AGAAGGTTTTAGGGCAGTAGATTTT 58.447 36.000 0.00 0.00 0.00 1.82
6287 7490 7.010771 AGAAGGTTTTAGGGCAGTAGATTTTT 58.989 34.615 0.00 0.00 0.00 1.94
6359 7562 7.825270 ACATGGTCATTGCATATTTTGACATTT 59.175 29.630 0.00 0.00 40.14 2.32
6360 7563 8.670135 CATGGTCATTGCATATTTTGACATTTT 58.330 29.630 12.96 0.00 40.14 1.82
6383 7586 7.922505 TTGAATTACCGAATGTTCAAACTTG 57.077 32.000 0.00 0.00 37.56 3.16
6433 7636 7.111247 ACTCACTACGATAGACACTACTACT 57.889 40.000 0.00 0.00 41.38 2.57
6435 7638 6.279123 TCACTACGATAGACACTACTACTGG 58.721 44.000 0.00 0.00 41.38 4.00
6458 7661 2.092968 GCACTACTTGTCATCATCCCCA 60.093 50.000 0.00 0.00 0.00 4.96
6459 7662 3.801698 CACTACTTGTCATCATCCCCAG 58.198 50.000 0.00 0.00 0.00 4.45
6460 7663 3.452264 CACTACTTGTCATCATCCCCAGA 59.548 47.826 0.00 0.00 0.00 3.86
6461 7664 3.708631 ACTACTTGTCATCATCCCCAGAG 59.291 47.826 0.00 0.00 0.00 3.35
6462 7665 2.555664 ACTTGTCATCATCCCCAGAGT 58.444 47.619 0.00 0.00 0.00 3.24
6463 7666 2.503356 ACTTGTCATCATCCCCAGAGTC 59.497 50.000 0.00 0.00 0.00 3.36
6464 7667 1.114627 TGTCATCATCCCCAGAGTCG 58.885 55.000 0.00 0.00 0.00 4.18
6465 7668 1.341976 TGTCATCATCCCCAGAGTCGA 60.342 52.381 0.00 0.00 0.00 4.20
6466 7669 1.067821 GTCATCATCCCCAGAGTCGAC 59.932 57.143 7.70 7.70 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.336713 GTCCCTTCAAATCTGAATACAGGC 59.663 45.833 0.00 0.00 40.78 4.85
1 2 4.572389 CGTCCCTTCAAATCTGAATACAGG 59.428 45.833 0.00 0.00 40.78 4.00
2 3 4.572389 CCGTCCCTTCAAATCTGAATACAG 59.428 45.833 0.00 0.00 40.78 2.74
3 4 4.019681 ACCGTCCCTTCAAATCTGAATACA 60.020 41.667 0.00 0.00 40.78 2.29
4 5 4.332819 CACCGTCCCTTCAAATCTGAATAC 59.667 45.833 0.00 0.00 40.78 1.89
5 6 4.513442 CACCGTCCCTTCAAATCTGAATA 58.487 43.478 0.00 0.00 40.78 1.75
6 7 3.347216 CACCGTCCCTTCAAATCTGAAT 58.653 45.455 0.00 0.00 40.78 2.57
8 9 1.003118 CCACCGTCCCTTCAAATCTGA 59.997 52.381 0.00 0.00 0.00 3.27
9 10 1.271379 ACCACCGTCCCTTCAAATCTG 60.271 52.381 0.00 0.00 0.00 2.90
10 11 1.003233 GACCACCGTCCCTTCAAATCT 59.997 52.381 0.00 0.00 32.40 2.40
11 12 1.450025 GACCACCGTCCCTTCAAATC 58.550 55.000 0.00 0.00 32.40 2.17
12 13 0.321298 CGACCACCGTCCCTTCAAAT 60.321 55.000 0.00 0.00 35.40 2.32
16 17 2.260743 GTCGACCACCGTCCCTTC 59.739 66.667 3.51 0.00 39.75 3.46
24 25 1.275291 TGGAAGATTCAGTCGACCACC 59.725 52.381 13.01 5.20 34.06 4.61
54 55 4.220413 CGTCTCTCGGCTACAGGA 57.780 61.111 0.00 0.00 35.71 3.86
70 72 1.374758 GCTTCTGTGTCTGGACCCG 60.375 63.158 0.00 0.00 0.00 5.28
80 82 2.333389 AACGAGTCTACGCTTCTGTG 57.667 50.000 0.00 0.00 36.70 3.66
127 136 2.817258 CTGAACTTTAATCCCAACGCCA 59.183 45.455 0.00 0.00 0.00 5.69
155 169 5.509840 GCCACCTGTATGTAGTATCCTTCTG 60.510 48.000 0.00 0.00 0.00 3.02
333 368 2.280628 CCGGAATTTCTTCTCCCTTCG 58.719 52.381 0.00 0.00 0.00 3.79
379 414 2.668632 CACCTGGGCCGCTTCTAA 59.331 61.111 0.00 0.00 0.00 2.10
380 415 4.096003 GCACCTGGGCCGCTTCTA 62.096 66.667 0.00 0.00 0.00 2.10
414 449 3.000819 TGGGCAGGGACGAATCGT 61.001 61.111 8.47 8.47 45.10 3.73
553 597 4.491409 GCTTCCCCTCGCTTCCCC 62.491 72.222 0.00 0.00 0.00 4.81
608 661 2.436824 GCTTTCGGGGCTCTGGTC 60.437 66.667 0.00 0.00 0.00 4.02
651 709 4.452733 GAGGGCGAGGGGTTGTCG 62.453 72.222 0.00 0.00 40.50 4.35
652 710 3.003763 AGAGGGCGAGGGGTTGTC 61.004 66.667 0.00 0.00 0.00 3.18
653 711 3.322466 CAGAGGGCGAGGGGTTGT 61.322 66.667 0.00 0.00 0.00 3.32
654 712 3.316573 GACAGAGGGCGAGGGGTTG 62.317 68.421 0.00 0.00 0.00 3.77
655 713 3.003763 GACAGAGGGCGAGGGGTT 61.004 66.667 0.00 0.00 0.00 4.11
656 714 3.966930 GAGACAGAGGGCGAGGGGT 62.967 68.421 0.00 0.00 0.00 4.95
657 715 3.151022 GAGACAGAGGGCGAGGGG 61.151 72.222 0.00 0.00 0.00 4.79
658 716 2.043450 AGAGACAGAGGGCGAGGG 60.043 66.667 0.00 0.00 0.00 4.30
659 717 3.074999 GCAGAGACAGAGGGCGAGG 62.075 68.421 0.00 0.00 0.00 4.63
661 719 3.071206 GGCAGAGACAGAGGGCGA 61.071 66.667 0.00 0.00 0.00 5.54
663 721 1.675720 GAGAGGCAGAGACAGAGGGC 61.676 65.000 0.00 0.00 0.00 5.19
665 723 1.383456 CGGAGAGGCAGAGACAGAGG 61.383 65.000 0.00 0.00 0.00 3.69
667 725 2.049185 GCGGAGAGGCAGAGACAGA 61.049 63.158 0.00 0.00 0.00 3.41
676 747 1.066071 GGATATAAAGGGCGGAGAGGC 60.066 57.143 0.00 0.00 45.91 4.70
677 748 1.555533 GGGATATAAAGGGCGGAGAGG 59.444 57.143 0.00 0.00 0.00 3.69
679 750 1.652947 GGGGATATAAAGGGCGGAGA 58.347 55.000 0.00 0.00 0.00 3.71
713 784 3.972276 CTCCGCTAGCCTCGCCTC 61.972 72.222 9.66 0.00 0.00 4.70
735 806 2.031120 CGATGGCTCTCCTCTCTTCTT 58.969 52.381 0.00 0.00 0.00 2.52
875 946 4.882396 GCGGCGGAGAAGAGGAGC 62.882 72.222 9.78 0.00 0.00 4.70
920 991 8.870116 AGTTTGGAGTATGTATGTATATGAGCA 58.130 33.333 0.00 0.00 0.00 4.26
969 1077 4.816925 GGCTTAATCACCTAAAAGATCGCT 59.183 41.667 0.00 0.00 0.00 4.93
970 1078 4.318831 CGGCTTAATCACCTAAAAGATCGC 60.319 45.833 0.00 0.00 0.00 4.58
971 1079 4.211374 CCGGCTTAATCACCTAAAAGATCG 59.789 45.833 0.00 0.00 0.00 3.69
972 1080 4.023963 GCCGGCTTAATCACCTAAAAGATC 60.024 45.833 22.15 0.00 0.00 2.75
977 1085 1.207570 TCGCCGGCTTAATCACCTAAA 59.792 47.619 26.68 0.00 0.00 1.85
1027 1141 2.520968 GCCACCACTTCCACCCTT 59.479 61.111 0.00 0.00 0.00 3.95
1050 1164 4.742201 CCGACCCTCACAGCACCG 62.742 72.222 0.00 0.00 0.00 4.94
1272 1386 2.687935 GCAGAGGTAGAGGAAGAGAGTG 59.312 54.545 0.00 0.00 0.00 3.51
1273 1387 2.357777 GGCAGAGGTAGAGGAAGAGAGT 60.358 54.545 0.00 0.00 0.00 3.24
1275 1389 1.926665 AGGCAGAGGTAGAGGAAGAGA 59.073 52.381 0.00 0.00 0.00 3.10
1277 1391 2.043115 TGAAGGCAGAGGTAGAGGAAGA 59.957 50.000 0.00 0.00 0.00 2.87
1280 1394 1.359474 AGTGAAGGCAGAGGTAGAGGA 59.641 52.381 0.00 0.00 0.00 3.71
1307 1447 3.264193 ACAGTGCAGATGGGAGTGATTAA 59.736 43.478 4.03 0.00 40.46 1.40
1308 1448 2.840038 ACAGTGCAGATGGGAGTGATTA 59.160 45.455 4.03 0.00 40.46 1.75
1309 1449 1.632409 ACAGTGCAGATGGGAGTGATT 59.368 47.619 4.03 0.00 40.46 2.57
1329 1472 2.031420 ACTCAAGTCGTCGATCGTTGAA 60.031 45.455 15.94 0.00 35.33 2.69
1337 1480 4.185467 AGTAGTCTACTCAAGTCGTCGA 57.815 45.455 6.71 0.00 32.47 4.20
1338 1481 6.129115 GCTATAGTAGTCTACTCAAGTCGTCG 60.129 46.154 15.94 0.00 40.14 5.12
1339 1482 6.700960 TGCTATAGTAGTCTACTCAAGTCGTC 59.299 42.308 15.94 3.72 40.14 4.20
1353 1496 7.860649 ACTCTACTCTACCTGCTATAGTAGT 57.139 40.000 15.63 6.84 40.23 2.73
1354 1497 9.811995 CATACTCTACTCTACCTGCTATAGTAG 57.188 40.741 10.66 10.66 40.53 2.57
1355 1498 8.259411 GCATACTCTACTCTACCTGCTATAGTA 58.741 40.741 0.84 0.00 0.00 1.82
1356 1499 7.107542 GCATACTCTACTCTACCTGCTATAGT 58.892 42.308 0.84 0.00 0.00 2.12
1357 1500 7.106890 TGCATACTCTACTCTACCTGCTATAG 58.893 42.308 0.00 0.00 0.00 1.31
1358 1501 7.017319 TGCATACTCTACTCTACCTGCTATA 57.983 40.000 0.00 0.00 0.00 1.31
1359 1502 5.882040 TGCATACTCTACTCTACCTGCTAT 58.118 41.667 0.00 0.00 0.00 2.97
1360 1503 5.163184 ACTGCATACTCTACTCTACCTGCTA 60.163 44.000 0.00 0.00 0.00 3.49
1361 1504 4.141287 CTGCATACTCTACTCTACCTGCT 58.859 47.826 0.00 0.00 0.00 4.24
1362 1505 3.886505 ACTGCATACTCTACTCTACCTGC 59.113 47.826 0.00 0.00 0.00 4.85
1363 1506 6.348950 GCATACTGCATACTCTACTCTACCTG 60.349 46.154 0.00 0.00 44.26 4.00
1364 1507 5.708230 GCATACTGCATACTCTACTCTACCT 59.292 44.000 0.00 0.00 44.26 3.08
1365 1508 5.391097 CGCATACTGCATACTCTACTCTACC 60.391 48.000 0.00 0.00 45.36 3.18
1366 1509 5.179742 ACGCATACTGCATACTCTACTCTAC 59.820 44.000 0.00 0.00 45.36 2.59
1367 1510 5.306394 ACGCATACTGCATACTCTACTCTA 58.694 41.667 0.00 0.00 45.36 2.43
1368 1511 4.138290 ACGCATACTGCATACTCTACTCT 58.862 43.478 0.00 0.00 45.36 3.24
1369 1512 4.491234 ACGCATACTGCATACTCTACTC 57.509 45.455 0.00 0.00 45.36 2.59
1370 1513 4.580995 AGAACGCATACTGCATACTCTACT 59.419 41.667 0.00 0.00 45.36 2.57
1371 1514 4.861210 AGAACGCATACTGCATACTCTAC 58.139 43.478 0.00 0.00 45.36 2.59
1372 1515 5.163550 ACAAGAACGCATACTGCATACTCTA 60.164 40.000 0.00 0.00 45.36 2.43
1373 1516 4.115516 CAAGAACGCATACTGCATACTCT 58.884 43.478 0.00 0.00 45.36 3.24
1374 1517 3.865745 ACAAGAACGCATACTGCATACTC 59.134 43.478 0.00 0.00 45.36 2.59
1375 1518 3.861840 ACAAGAACGCATACTGCATACT 58.138 40.909 0.00 0.00 45.36 2.12
1376 1519 4.600012 AACAAGAACGCATACTGCATAC 57.400 40.909 0.00 0.00 45.36 2.39
1377 1520 4.142708 CCAAACAAGAACGCATACTGCATA 60.143 41.667 0.00 0.00 45.36 3.14
1378 1521 3.366273 CCAAACAAGAACGCATACTGCAT 60.366 43.478 0.00 0.00 45.36 3.96
1379 1522 2.031245 CCAAACAAGAACGCATACTGCA 60.031 45.455 0.00 0.00 45.36 4.41
1380 1523 2.031157 ACCAAACAAGAACGCATACTGC 60.031 45.455 0.00 0.00 40.69 4.40
1381 1524 3.896648 ACCAAACAAGAACGCATACTG 57.103 42.857 0.00 0.00 0.00 2.74
1427 1572 2.645802 AGAGGACGAGCGAGATACTTT 58.354 47.619 0.00 0.00 0.00 2.66
1431 1576 3.069872 ACTCTTAGAGGACGAGCGAGATA 59.930 47.826 14.24 0.00 33.35 1.98
1438 1583 5.818336 TCACTAATCACTCTTAGAGGACGAG 59.182 44.000 14.24 10.32 33.35 4.18
1448 1593 8.016301 TGCATCTCTAATCACTAATCACTCTT 57.984 34.615 0.00 0.00 0.00 2.85
1460 1605 5.619132 TCCATCACTTGCATCTCTAATCA 57.381 39.130 0.00 0.00 0.00 2.57
1490 1635 4.641094 TCTCTTCTGGTACAAGCTACTAGC 59.359 45.833 0.00 0.00 42.84 3.42
1538 1683 4.329545 GGGGCGTGTCTGGAAGCA 62.330 66.667 0.00 0.00 0.00 3.91
1581 1726 4.072839 GTGGAGAACAAAAGGTAGAAGGG 58.927 47.826 0.00 0.00 0.00 3.95
1589 1734 2.285083 TGTCGTGTGGAGAACAAAAGG 58.715 47.619 0.00 0.00 41.57 3.11
1631 1776 2.995283 TGCTAAGTGCTCCTACTACGA 58.005 47.619 0.00 0.00 43.37 3.43
1633 1778 4.141914 ACCATTGCTAAGTGCTCCTACTAC 60.142 45.833 0.00 0.00 43.37 2.73
1634 1779 4.030913 ACCATTGCTAAGTGCTCCTACTA 58.969 43.478 0.00 0.00 43.37 1.82
1635 1780 2.840651 ACCATTGCTAAGTGCTCCTACT 59.159 45.455 0.00 0.00 43.37 2.57
1636 1781 3.268023 ACCATTGCTAAGTGCTCCTAC 57.732 47.619 0.00 0.00 43.37 3.18
1637 1782 3.772572 TGTACCATTGCTAAGTGCTCCTA 59.227 43.478 0.00 0.00 43.37 2.94
1638 1783 2.571653 TGTACCATTGCTAAGTGCTCCT 59.428 45.455 0.00 0.00 43.37 3.69
1640 1785 3.861840 TCTGTACCATTGCTAAGTGCTC 58.138 45.455 0.00 0.00 43.37 4.26
1641 1786 3.981071 TCTGTACCATTGCTAAGTGCT 57.019 42.857 0.00 0.00 43.37 4.40
1642 1787 4.635765 TCAATCTGTACCATTGCTAAGTGC 59.364 41.667 8.98 0.00 43.25 4.40
1644 1789 4.878397 GCTCAATCTGTACCATTGCTAAGT 59.122 41.667 8.98 0.00 32.17 2.24
1646 1791 3.871006 CGCTCAATCTGTACCATTGCTAA 59.129 43.478 8.98 0.00 32.17 3.09
1648 1793 2.283298 CGCTCAATCTGTACCATTGCT 58.717 47.619 8.98 0.00 32.17 3.91
1651 1796 2.009774 GTGCGCTCAATCTGTACCATT 58.990 47.619 9.73 0.00 0.00 3.16
1652 1797 1.066215 TGTGCGCTCAATCTGTACCAT 60.066 47.619 10.16 0.00 0.00 3.55
1694 1913 0.378962 CGAGGAGTACGAGCTTCCTG 59.621 60.000 8.67 0.00 0.00 3.86
1709 1928 3.072184 TCTTACTACTACCCCTAGCGAGG 59.928 52.174 5.78 5.78 43.33 4.63
1710 1929 4.348863 TCTTACTACTACCCCTAGCGAG 57.651 50.000 0.00 0.00 0.00 5.03
1716 1935 7.341512 GTGACAATAGTTCTTACTACTACCCCT 59.658 40.741 0.00 0.00 39.59 4.79
1718 1937 7.487484 GGTGACAATAGTTCTTACTACTACCC 58.513 42.308 0.00 0.00 39.59 3.69
1754 1980 2.033294 TGCATGCCACGTGCCTTA 59.967 55.556 16.68 0.00 41.83 2.69
1765 1991 0.109781 AAACATCCGTTCGTGCATGC 60.110 50.000 11.82 11.82 32.91 4.06
1829 2055 4.833380 AGCCGTATGTGTAGTAGATCCATT 59.167 41.667 0.00 0.00 0.00 3.16
1837 2063 2.882761 CTGGCTAGCCGTATGTGTAGTA 59.117 50.000 28.28 5.56 39.42 1.82
1862 2088 3.253955 GCGAACAGCGGAACATGT 58.746 55.556 0.00 0.00 41.29 3.21
1891 2117 3.441010 CACGCGCGCTTTTGAACG 61.441 61.111 32.58 13.34 0.00 3.95
1920 2146 0.872388 GATGTTTCACCCGTTCGCTT 59.128 50.000 0.00 0.00 0.00 4.68
1963 2189 5.245531 GTCCAACAAACATCATCAGTAGGA 58.754 41.667 0.00 0.00 0.00 2.94
1964 2190 4.093408 CGTCCAACAAACATCATCAGTAGG 59.907 45.833 0.00 0.00 0.00 3.18
1965 2191 4.093408 CCGTCCAACAAACATCATCAGTAG 59.907 45.833 0.00 0.00 0.00 2.57
1966 2192 4.000325 CCGTCCAACAAACATCATCAGTA 59.000 43.478 0.00 0.00 0.00 2.74
1967 2193 2.813754 CCGTCCAACAAACATCATCAGT 59.186 45.455 0.00 0.00 0.00 3.41
1968 2194 3.073678 TCCGTCCAACAAACATCATCAG 58.926 45.455 0.00 0.00 0.00 2.90
1969 2195 2.811431 GTCCGTCCAACAAACATCATCA 59.189 45.455 0.00 0.00 0.00 3.07
1970 2196 2.811431 TGTCCGTCCAACAAACATCATC 59.189 45.455 0.00 0.00 0.00 2.92
1971 2197 2.857483 TGTCCGTCCAACAAACATCAT 58.143 42.857 0.00 0.00 0.00 2.45
1972 2198 2.333688 TGTCCGTCCAACAAACATCA 57.666 45.000 0.00 0.00 0.00 3.07
2001 2227 2.943690 TCTGCACTATGAGTAGTCGGTC 59.056 50.000 0.00 0.00 39.12 4.79
2012 2240 5.664457 TCCATGTACTTCTTCTGCACTATG 58.336 41.667 0.00 0.00 0.00 2.23
2013 2241 5.939764 TCCATGTACTTCTTCTGCACTAT 57.060 39.130 0.00 0.00 0.00 2.12
2067 2295 7.683437 ACAAACAGCCTACTAGGAAAAATAC 57.317 36.000 6.26 0.00 37.67 1.89
2125 2353 0.611714 TTAGGTCGACCAGAAAGGCC 59.388 55.000 35.00 6.06 43.14 5.19
2212 2546 1.538512 CCTGTCAATGGTCAGCACAAG 59.461 52.381 0.00 0.00 0.00 3.16
2283 2617 3.380142 CGTGGGAAACTGAAATGGTTTG 58.620 45.455 0.00 0.00 37.07 2.93
2311 2645 2.222420 CGTTAATGTCCAAGCGTGTACG 60.222 50.000 0.00 0.00 43.27 3.67
2312 2646 2.473376 GCGTTAATGTCCAAGCGTGTAC 60.473 50.000 0.00 0.00 0.00 2.90
2313 2647 1.727880 GCGTTAATGTCCAAGCGTGTA 59.272 47.619 0.00 0.00 0.00 2.90
2337 2671 9.623000 AGCTACGGTCCACTATTTTATTTTATT 57.377 29.630 0.00 0.00 0.00 1.40
2339 2673 7.011669 GCAGCTACGGTCCACTATTTTATTTTA 59.988 37.037 0.00 0.00 0.00 1.52
2344 2678 3.449737 AGCAGCTACGGTCCACTATTTTA 59.550 43.478 0.00 0.00 0.00 1.52
2347 2681 1.486211 AGCAGCTACGGTCCACTATT 58.514 50.000 0.00 0.00 0.00 1.73
2351 2685 1.741770 CCAAGCAGCTACGGTCCAC 60.742 63.158 0.00 0.00 0.00 4.02
2449 2784 1.807142 GTCAAAAGGAGAAGGCGAAGG 59.193 52.381 0.00 0.00 0.00 3.46
2450 2785 2.494059 TGTCAAAAGGAGAAGGCGAAG 58.506 47.619 0.00 0.00 0.00 3.79
2453 3301 3.708563 TTTTGTCAAAAGGAGAAGGCG 57.291 42.857 6.65 0.00 29.53 5.52
2459 3307 3.392882 GGCCACATTTTGTCAAAAGGAG 58.607 45.455 25.04 18.19 35.84 3.69
2505 3353 7.066887 TCGATCATTTGCACACTTATGGTATTT 59.933 33.333 0.00 0.00 0.00 1.40
2506 3354 6.542005 TCGATCATTTGCACACTTATGGTATT 59.458 34.615 0.00 0.00 0.00 1.89
2514 3362 3.820467 TCCTTTCGATCATTTGCACACTT 59.180 39.130 0.00 0.00 0.00 3.16
2526 3374 0.525029 GTCCGTCCGTCCTTTCGATC 60.525 60.000 0.00 0.00 0.00 3.69
2553 3401 0.108615 CCTGTTCTCTAGCGTGGTGG 60.109 60.000 0.00 0.00 0.00 4.61
2609 3466 0.256464 AACCTCGTGGGGTGTCAAAA 59.744 50.000 8.63 0.00 39.85 2.44
2665 3522 1.000496 CTTCTAGTCCCCGCGTAATCC 60.000 57.143 4.92 0.00 0.00 3.01
2681 3538 2.158813 TCGAAAGTTCCACCAAGCTTCT 60.159 45.455 0.00 0.00 0.00 2.85
2832 3734 4.898829 TGAATGTGCATTGTATAGGTGC 57.101 40.909 1.77 0.00 39.26 5.01
2863 3765 7.008628 CGCCTTTCATTGAAGATTGTATTTCAC 59.991 37.037 0.00 0.00 33.36 3.18
2864 3766 7.028962 CGCCTTTCATTGAAGATTGTATTTCA 58.971 34.615 0.00 0.00 0.00 2.69
2865 3767 7.029563 ACGCCTTTCATTGAAGATTGTATTTC 58.970 34.615 0.00 0.00 0.00 2.17
2866 3768 6.924111 ACGCCTTTCATTGAAGATTGTATTT 58.076 32.000 0.00 0.00 0.00 1.40
2869 3796 5.245531 AGACGCCTTTCATTGAAGATTGTA 58.754 37.500 0.00 0.00 0.00 2.41
2871 3798 4.691860 AGACGCCTTTCATTGAAGATTG 57.308 40.909 0.00 0.00 0.00 2.67
2886 3813 3.281158 AGAGGACTTTCTAGTAGACGCC 58.719 50.000 0.00 0.00 33.84 5.68
2888 3815 7.846644 TCTTTAGAGGACTTTCTAGTAGACG 57.153 40.000 0.00 0.00 33.84 4.18
2971 3901 9.645059 TTCCAATTCGATTTGCACATTAAAATA 57.355 25.926 13.33 0.00 0.00 1.40
2972 3902 8.545229 TTCCAATTCGATTTGCACATTAAAAT 57.455 26.923 13.33 0.00 0.00 1.82
2985 3915 7.938140 TTTCTGTAGGATTTCCAATTCGATT 57.062 32.000 0.00 0.00 38.89 3.34
3005 3935 2.543777 TGCTAGCGACCTTGTTTTCT 57.456 45.000 10.77 0.00 0.00 2.52
3011 3941 2.522836 ATCTGATGCTAGCGACCTTG 57.477 50.000 10.77 0.00 0.00 3.61
3012 3942 3.550437 AAATCTGATGCTAGCGACCTT 57.450 42.857 10.77 0.00 0.00 3.50
3112 4042 7.020602 GGGAAAAATATTTTGCCATTTTGACG 58.979 34.615 30.86 0.00 45.99 4.35
3120 4050 4.891992 TTCGGGGAAAAATATTTTGCCA 57.108 36.364 30.86 14.32 45.99 4.92
3135 4065 3.365969 GCAACTTTGACTATGTTTCGGGG 60.366 47.826 0.00 0.00 0.00 5.73
3138 4068 5.728049 CGTATGCAACTTTGACTATGTTTCG 59.272 40.000 0.00 0.00 0.00 3.46
3163 4093 3.107642 TGTTCTTTCGGACAACCTCTC 57.892 47.619 0.00 0.00 0.00 3.20
3188 4118 2.333926 TGAATCCTACAGCAAACGACG 58.666 47.619 0.00 0.00 0.00 5.12
3221 4158 9.965748 ATAAGAAAAACACACAAAAATGAAACG 57.034 25.926 0.00 0.00 0.00 3.60
3252 4189 4.130118 GTGGGTGAAGCATGGTATTCTAG 58.870 47.826 0.00 0.00 0.00 2.43
3334 4272 9.601971 GTAACACATTAAGCGAGAACAATAAAA 57.398 29.630 0.00 0.00 0.00 1.52
3396 4334 2.400399 CGCGTGTCTAGGAACAAAAGA 58.600 47.619 0.00 0.00 0.00 2.52
3480 4418 9.899226 CTCGTGTATGATCTATGATTTTGTAGA 57.101 33.333 0.00 0.00 0.00 2.59
3619 4558 8.036273 ACGTTTTCTTAACTTTCTTGAGTTCA 57.964 30.769 0.00 0.00 40.24 3.18
3620 4559 8.891367 AACGTTTTCTTAACTTTCTTGAGTTC 57.109 30.769 0.00 0.00 40.24 3.01
3627 4569 8.463607 TGGATTTGAACGTTTTCTTAACTTTCT 58.536 29.630 0.46 0.00 31.96 2.52
3635 4577 4.808895 GGCTTTGGATTTGAACGTTTTCTT 59.191 37.500 0.46 0.00 32.36 2.52
3659 4604 9.833917 ATATTAGTTGAGGGACTAAGTTTTAGC 57.166 33.333 4.15 0.00 43.25 3.09
3673 4618 5.057149 CCCGTGAAGGAATATTAGTTGAGG 58.943 45.833 0.00 0.00 45.00 3.86
3693 4638 3.470888 ATCCGGTCAAGCTCCCCG 61.471 66.667 0.00 10.73 41.37 5.73
3699 4644 2.380084 TGACTTACATCCGGTCAAGC 57.620 50.000 0.00 0.00 37.10 4.01
3743 4689 8.608317 GGCAGACTAGAAGATTTGAAGTTTATC 58.392 37.037 0.00 0.00 0.00 1.75
3747 4693 5.249420 GGGCAGACTAGAAGATTTGAAGTT 58.751 41.667 0.00 0.00 0.00 2.66
3753 4699 3.589288 AGTTGGGGCAGACTAGAAGATTT 59.411 43.478 0.00 0.00 0.00 2.17
3756 4702 2.327325 AGTTGGGGCAGACTAGAAGA 57.673 50.000 0.00 0.00 0.00 2.87
3767 4713 1.289066 GGCTCGAAAAAGTTGGGGC 59.711 57.895 0.00 0.00 38.18 5.80
3768 4714 0.313987 GTGGCTCGAAAAAGTTGGGG 59.686 55.000 0.00 0.00 0.00 4.96
3776 4722 0.321671 CTGGGAGAGTGGCTCGAAAA 59.678 55.000 0.00 0.00 44.91 2.29
3786 4732 1.410004 TGAACGTTGACTGGGAGAGT 58.590 50.000 5.00 0.00 37.76 3.24
3801 4747 2.287547 TGCCATCGTTCTTGCTTTGAAC 60.288 45.455 0.00 0.00 40.05 3.18
3809 4755 3.436704 TCTTAAGCTTGCCATCGTTCTTG 59.563 43.478 9.86 0.00 0.00 3.02
3817 4763 3.160269 AGCACTTTCTTAAGCTTGCCAT 58.840 40.909 9.86 0.00 35.21 4.40
3826 4772 6.017109 CAGCAAAGGAACTAGCACTTTCTTAA 60.017 38.462 4.48 0.00 41.22 1.85
3853 4799 1.406477 GGATACCAACTCCACCCGTTC 60.406 57.143 0.00 0.00 32.72 3.95
3854 4800 0.616891 GGATACCAACTCCACCCGTT 59.383 55.000 0.00 0.00 32.72 4.44
3855 4801 2.293877 GGATACCAACTCCACCCGT 58.706 57.895 0.00 0.00 32.72 5.28
3872 4818 7.044798 TGTTTTAAGAGAACAACAATTTGGGG 58.955 34.615 0.78 0.00 37.00 4.96
3879 4825 6.096141 TGCCAGATGTTTTAAGAGAACAACAA 59.904 34.615 0.00 0.00 40.10 2.83
3880 4826 5.592282 TGCCAGATGTTTTAAGAGAACAACA 59.408 36.000 0.00 0.00 40.10 3.33
3897 4843 0.844661 TACACACCCCCTTGCCAGAT 60.845 55.000 0.00 0.00 0.00 2.90
3899 4845 0.609131 CTTACACACCCCCTTGCCAG 60.609 60.000 0.00 0.00 0.00 4.85
3909 4855 3.071167 AGGACCTTGAACTCTTACACACC 59.929 47.826 0.00 0.00 0.00 4.16
3913 4859 5.888982 AGAAAGGACCTTGAACTCTTACA 57.111 39.130 7.72 0.00 0.00 2.41
3914 4860 8.312896 CTTTAGAAAGGACCTTGAACTCTTAC 57.687 38.462 7.72 0.00 32.40 2.34
3937 4883 3.379452 ACTCTAGTCTAATGCCTGCCTT 58.621 45.455 0.00 0.00 0.00 4.35
3942 4888 4.705507 TCACGAAACTCTAGTCTAATGCCT 59.294 41.667 0.00 0.00 0.00 4.75
3962 4908 1.668151 GACAGACAACCCGGCTCAC 60.668 63.158 0.00 0.00 0.00 3.51
3970 4916 4.598062 GCACTACAAAAAGACAGACAACC 58.402 43.478 0.00 0.00 0.00 3.77
3971 4917 4.271687 CGCACTACAAAAAGACAGACAAC 58.728 43.478 0.00 0.00 0.00 3.32
3972 4918 3.242608 GCGCACTACAAAAAGACAGACAA 60.243 43.478 0.30 0.00 0.00 3.18
3974 4920 2.286833 TGCGCACTACAAAAAGACAGAC 59.713 45.455 5.66 0.00 0.00 3.51
3975 4921 2.556257 TGCGCACTACAAAAAGACAGA 58.444 42.857 5.66 0.00 0.00 3.41
3976 4922 3.242739 ACTTGCGCACTACAAAAAGACAG 60.243 43.478 11.12 1.76 0.00 3.51
3978 4924 3.242608 TGACTTGCGCACTACAAAAAGAC 60.243 43.478 11.12 2.99 0.00 3.01
3979 4925 2.939756 TGACTTGCGCACTACAAAAAGA 59.060 40.909 11.12 0.00 0.00 2.52
4000 4947 6.998673 ACTTATCTGGTTTTAAAGTGCACTCT 59.001 34.615 21.95 9.39 0.00 3.24
4006 4953 8.244113 GGATGGAACTTATCTGGTTTTAAAGTG 58.756 37.037 0.00 0.00 31.09 3.16
4011 4958 6.216662 TCAGGGATGGAACTTATCTGGTTTTA 59.783 38.462 0.00 0.00 0.00 1.52
4018 4965 6.331307 AGCTTTATCAGGGATGGAACTTATCT 59.669 38.462 0.00 0.00 0.00 1.98
4027 4974 2.498167 CCGAAGCTTTATCAGGGATGG 58.502 52.381 0.00 0.00 0.00 3.51
4029 4976 2.127708 ACCCGAAGCTTTATCAGGGAT 58.872 47.619 22.82 10.64 41.26 3.85
4035 4982 2.817844 ACAAACCACCCGAAGCTTTATC 59.182 45.455 0.00 0.00 0.00 1.75
4036 4983 2.556622 CACAAACCACCCGAAGCTTTAT 59.443 45.455 0.00 0.00 0.00 1.40
4040 4987 1.101049 CACACAAACCACCCGAAGCT 61.101 55.000 0.00 0.00 0.00 3.74
4043 4990 0.035343 TCACACACAAACCACCCGAA 60.035 50.000 0.00 0.00 0.00 4.30
4044 4991 0.745128 GTCACACACAAACCACCCGA 60.745 55.000 0.00 0.00 0.00 5.14
4045 4992 1.725066 GTCACACACAAACCACCCG 59.275 57.895 0.00 0.00 0.00 5.28
4046 4993 0.745128 TCGTCACACACAAACCACCC 60.745 55.000 0.00 0.00 0.00 4.61
4065 5012 5.012768 CCAATATTAGTCAATACCGGGTCCT 59.987 44.000 6.32 0.00 29.44 3.85
4071 5018 4.151689 CGTGGCCAATATTAGTCAATACCG 59.848 45.833 7.24 0.00 29.44 4.02
4075 5022 3.882888 CCACGTGGCCAATATTAGTCAAT 59.117 43.478 24.02 0.00 0.00 2.57
4090 5037 1.826054 TCAAAACCAGGCCACGTGG 60.826 57.895 30.66 30.66 44.01 4.94
4093 5040 3.039134 GGTCAAAACCAGGCCACG 58.961 61.111 5.01 0.00 45.68 4.94
4103 5050 0.696501 GGCCCAGGTAGAGGTCAAAA 59.303 55.000 0.00 0.00 0.00 2.44
4108 5055 1.076192 CTACGGCCCAGGTAGAGGT 60.076 63.158 9.96 0.00 39.76 3.85
4121 5098 2.106332 CTAAGGGGCGTGCTACGG 59.894 66.667 10.02 0.00 42.82 4.02
4129 5106 2.109181 GGCTAGCACTAAGGGGCG 59.891 66.667 18.24 0.00 34.54 6.13
4179 5156 4.079901 TCCCATACTCTATCGATCCCCTAC 60.080 50.000 0.00 0.00 0.00 3.18
4181 5158 2.927007 TCCCATACTCTATCGATCCCCT 59.073 50.000 0.00 0.00 0.00 4.79
4188 5165 3.085533 CTCCCTGTCCCATACTCTATCG 58.914 54.545 0.00 0.00 0.00 2.92
4191 5168 3.404292 TCTCTCCCTGTCCCATACTCTA 58.596 50.000 0.00 0.00 0.00 2.43
4192 5169 2.218673 TCTCTCCCTGTCCCATACTCT 58.781 52.381 0.00 0.00 0.00 3.24
4197 5174 0.978146 CCGTTCTCTCCCTGTCCCAT 60.978 60.000 0.00 0.00 0.00 4.00
4198 5175 1.609501 CCGTTCTCTCCCTGTCCCA 60.610 63.158 0.00 0.00 0.00 4.37
4227 5204 4.285003 TCACTTAAGTGGCTAACTGGCTAA 59.715 41.667 30.35 8.03 45.65 3.09
4228 5205 3.835978 TCACTTAAGTGGCTAACTGGCTA 59.164 43.478 30.35 8.22 45.65 3.93
4229 5206 2.637872 TCACTTAAGTGGCTAACTGGCT 59.362 45.455 30.35 0.00 45.65 4.75
4230 5207 3.053831 TCACTTAAGTGGCTAACTGGC 57.946 47.619 30.35 0.00 45.65 4.85
4231 5208 4.393062 CACATCACTTAAGTGGCTAACTGG 59.607 45.833 30.35 15.39 45.65 4.00
4232 5209 4.393062 CCACATCACTTAAGTGGCTAACTG 59.607 45.833 30.35 20.14 45.39 3.16
4233 5210 4.579869 CCACATCACTTAAGTGGCTAACT 58.420 43.478 30.35 9.90 45.39 2.24
4234 5211 4.946784 CCACATCACTTAAGTGGCTAAC 57.053 45.455 30.35 0.00 45.39 2.34
4261 5238 3.698765 CCATGGTGGCCTGGTTTC 58.301 61.111 3.32 0.00 0.00 2.78
4275 5252 6.134535 TCGGGATTTACTAATATTGGCCAT 57.865 37.500 6.09 0.00 0.00 4.40
4290 5267 2.019249 CATGACATGCACTCGGGATTT 58.981 47.619 1.71 0.00 0.00 2.17
4320 5387 5.047590 AGTTTCGGCCCAATAACTTTTTAGG 60.048 40.000 0.00 0.00 0.00 2.69
4322 5389 6.183360 ACAAGTTTCGGCCCAATAACTTTTTA 60.183 34.615 13.45 0.00 38.41 1.52
4346 5413 7.110155 TCCCTCATCAACTAATAAAACCAGAC 58.890 38.462 0.00 0.00 0.00 3.51
4530 5600 4.023980 TGGTTCACTGATTCCTACGAGAT 58.976 43.478 0.00 0.00 0.00 2.75
4535 5605 9.010029 TCTTAATTTTGGTTCACTGATTCCTAC 57.990 33.333 0.00 0.00 0.00 3.18
4560 5630 5.555552 GCTCATTAGCGAGTCTTCTTTTTC 58.444 41.667 0.00 0.00 39.39 2.29
4599 5669 5.364778 TGGAAGTAAACATCATATCCACCG 58.635 41.667 0.00 0.00 30.90 4.94
4642 5713 2.054363 GAGCGACATCACACATATCCG 58.946 52.381 0.00 0.00 0.00 4.18
4649 5720 3.254060 ACTACATTGAGCGACATCACAC 58.746 45.455 0.00 0.00 0.00 3.82
4740 5828 7.301868 AGCATTTTCAAACATTTCCCTTCTA 57.698 32.000 0.00 0.00 0.00 2.10
4747 5835 7.948363 CGATCAAGAAGCATTTTCAAACATTTC 59.052 33.333 0.00 0.00 0.00 2.17
4751 5839 5.221880 CCGATCAAGAAGCATTTTCAAACA 58.778 37.500 0.00 0.00 0.00 2.83
4774 5862 3.548014 GCGGTACATTTCCATACATGTGC 60.548 47.826 9.11 0.00 35.24 4.57
4799 5889 3.471354 CCGGTTTGGTCAGTATCCC 57.529 57.895 0.00 0.00 0.00 3.85
4937 6027 2.675772 ACTGGGGAGTCGTCGTCC 60.676 66.667 0.00 0.00 0.00 4.79
5022 6115 4.457496 CCGGACGTGCTGGCAGAT 62.457 66.667 20.86 0.00 35.91 2.90
5217 6310 1.079612 CATCAGCAGACGCAGGTCA 60.080 57.895 0.00 0.00 45.92 4.02
5689 6793 9.649167 GTACCTGCATTAGTTCTTAGTTTCTTA 57.351 33.333 0.00 0.00 0.00 2.10
5692 6796 6.455246 GCGTACCTGCATTAGTTCTTAGTTTC 60.455 42.308 0.00 0.00 34.15 2.78
5693 6797 5.350640 GCGTACCTGCATTAGTTCTTAGTTT 59.649 40.000 0.00 0.00 34.15 2.66
5694 6798 4.868734 GCGTACCTGCATTAGTTCTTAGTT 59.131 41.667 0.00 0.00 34.15 2.24
5766 6934 6.861065 ACATTTATGTGTGTAATCGGATCC 57.139 37.500 0.00 0.00 40.03 3.36
5920 7090 9.632638 ACTATAATTCTTGCAACTGGACATAAT 57.367 29.630 0.00 0.00 0.00 1.28
5951 7121 4.999950 GCCACACTTATTATGGATCAGAGG 59.000 45.833 0.00 0.00 35.33 3.69
5955 7125 5.372343 ACTGCCACACTTATTATGGATCA 57.628 39.130 0.00 0.00 35.33 2.92
5971 7141 2.955660 CTGGGTTAGTTCAAAACTGCCA 59.044 45.455 13.45 0.00 42.84 4.92
6003 7199 3.555956 CCTCCGATCCAAAATAACTGTCG 59.444 47.826 0.00 0.00 0.00 4.35
6005 7201 3.279434 GCCTCCGATCCAAAATAACTGT 58.721 45.455 0.00 0.00 0.00 3.55
6026 7222 6.743575 ATTTCCATTCGAAGAAAGGTAGTG 57.256 37.500 15.22 1.66 45.90 2.74
6028 7224 7.145932 ACAATTTCCATTCGAAGAAAGGTAG 57.854 36.000 15.22 9.04 45.90 3.18
6036 7232 8.512138 AGGTTAAACTACAATTTCCATTCGAAG 58.488 33.333 3.35 0.00 0.00 3.79
6078 7274 3.050089 CTCCTCCTACTGAGTAGAGGGA 58.950 54.545 24.74 23.57 38.29 4.20
6082 7278 4.308128 TCCATCTCCTCCTACTGAGTAGA 58.692 47.826 20.66 1.93 40.00 2.59
6085 7281 5.671463 TTATCCATCTCCTCCTACTGAGT 57.329 43.478 0.00 0.00 39.65 3.41
6110 7306 5.611408 TCTCCCCCTAAGAGTTTTCTTCTTT 59.389 40.000 0.00 0.00 42.60 2.52
6129 7327 6.601217 AGAGTTTCTTCTTTTATGCATCTCCC 59.399 38.462 0.19 0.00 0.00 4.30
6155 7356 4.914420 CCGCTCGCTGCTCCTACG 62.914 72.222 0.00 0.00 40.11 3.51
6171 7373 2.650322 CCTCTACAGTCTCAGACCTCC 58.350 57.143 0.00 0.00 32.18 4.30
6195 7397 1.287442 TGGAATGCTCTTAATGGGCCA 59.713 47.619 9.61 9.61 0.00 5.36
6200 7402 4.576053 TCATCGGTTGGAATGCTCTTAATG 59.424 41.667 0.00 0.00 0.00 1.90
6204 7406 2.787473 TCATCGGTTGGAATGCTCTT 57.213 45.000 0.00 0.00 0.00 2.85
6208 7410 0.740149 TGCATCATCGGTTGGAATGC 59.260 50.000 0.00 0.00 0.00 3.56
6214 7416 3.127548 GCCCTATTATGCATCATCGGTTG 59.872 47.826 0.19 0.00 0.00 3.77
6251 7454 3.795688 AAAACCTTCTCTCTCATGCCA 57.204 42.857 0.00 0.00 0.00 4.92
6256 7459 3.248024 TGCCCTAAAACCTTCTCTCTCA 58.752 45.455 0.00 0.00 0.00 3.27
6318 7521 4.086457 GACCATGTTTATTTGGGTGTCCT 58.914 43.478 0.00 0.00 37.32 3.85
6359 7562 7.708051 TCAAGTTTGAACATTCGGTAATTCAA 58.292 30.769 0.00 0.00 38.85 2.69
6360 7563 7.265647 TCAAGTTTGAACATTCGGTAATTCA 57.734 32.000 0.00 0.00 33.55 2.57
6407 7610 8.859090 AGTAGTAGTGTCTATCGTAGTGAGTAT 58.141 37.037 0.00 0.00 0.00 2.12
6409 7612 6.979817 CAGTAGTAGTGTCTATCGTAGTGAGT 59.020 42.308 0.00 0.00 0.00 3.41
6410 7613 6.421501 CCAGTAGTAGTGTCTATCGTAGTGAG 59.578 46.154 4.31 0.00 0.00 3.51
6411 7614 6.279123 CCAGTAGTAGTGTCTATCGTAGTGA 58.721 44.000 4.31 0.00 0.00 3.41
6412 7615 5.050227 GCCAGTAGTAGTGTCTATCGTAGTG 60.050 48.000 4.31 0.00 0.00 2.74
6433 7636 0.320050 TGATGACAAGTAGTGCGCCA 59.680 50.000 4.18 0.00 0.00 5.69
6435 7638 1.594862 GGATGATGACAAGTAGTGCGC 59.405 52.381 0.00 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.