Multiple sequence alignment - TraesCS5D01G244600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G244600 chr5D 100.000 3490 0 0 1 3490 353078248 353074759 0.000000e+00 6445.0
1 TraesCS5D01G244600 chr5D 88.406 69 8 0 281 349 125764337 125764269 2.230000e-12 84.2
2 TraesCS5D01G244600 chr5B 93.432 2847 108 28 680 3490 416161122 416158319 0.000000e+00 4148.0
3 TraesCS5D01G244600 chr5B 83.178 107 13 5 766 868 416161224 416161119 3.710000e-15 93.5
4 TraesCS5D01G244600 chr5A 89.411 3088 180 65 468 3485 452686550 452689560 0.000000e+00 3755.0
5 TraesCS5D01G244600 chr6A 89.313 524 32 14 1650 2173 555421086 555420587 1.370000e-178 636.0
6 TraesCS5D01G244600 chr6A 79.032 248 43 6 2 249 312971480 312971242 1.000000e-35 161.0
7 TraesCS5D01G244600 chr6A 95.522 67 3 0 1513 1579 555421364 555421298 1.320000e-19 108.0
8 TraesCS5D01G244600 chr6A 89.855 69 7 0 281 349 616277497 616277429 4.800000e-14 89.8
9 TraesCS5D01G244600 chr6A 87.671 73 9 0 281 353 46774487 46774415 6.210000e-13 86.1
10 TraesCS5D01G244600 chr3A 89.958 478 45 1 1513 1990 12434043 12434517 6.400000e-172 614.0
11 TraesCS5D01G244600 chr3A 83.951 162 23 3 71 231 129201721 129201562 6.030000e-33 152.0
12 TraesCS5D01G244600 chr3A 76.779 267 47 14 1 263 737067751 737068006 6.080000e-28 135.0
13 TraesCS5D01G244600 chr3A 92.754 69 5 0 281 349 183226132 183226064 2.220000e-17 100.0
14 TraesCS5D01G244600 chr3A 92.754 69 5 0 281 349 183253543 183253475 2.220000e-17 100.0
15 TraesCS5D01G244600 chr1A 80.989 263 41 6 1 263 185320814 185321067 2.120000e-47 200.0
16 TraesCS5D01G244600 chr1A 83.099 71 9 2 1801 1871 556449720 556449653 1.050000e-05 62.1
17 TraesCS5D01G244600 chr6D 79.693 261 44 6 5 265 389418496 389418245 2.770000e-41 180.0
18 TraesCS5D01G244600 chr6D 77.273 176 34 6 78 250 249660288 249660460 7.970000e-17 99.0
19 TraesCS5D01G244600 chr4D 79.681 251 38 10 1 249 158912350 158912111 5.990000e-38 169.0
20 TraesCS5D01G244600 chr4B 96.774 93 3 0 1513 1605 429345446 429345354 4.660000e-34 156.0
21 TraesCS5D01G244600 chr2D 77.567 263 40 10 1 263 83873152 83873395 1.310000e-29 141.0
22 TraesCS5D01G244600 chr3D 76.285 253 42 10 1 250 586102489 586102726 6.120000e-23 119.0
23 TraesCS5D01G244600 chr1B 96.875 64 2 0 286 349 538389270 538389333 1.320000e-19 108.0
24 TraesCS5D01G244600 chr1B 92.857 70 5 0 281 350 538394002 538394071 6.160000e-18 102.0
25 TraesCS5D01G244600 chr1B 92.754 69 5 0 281 349 254103103 254103035 2.220000e-17 100.0
26 TraesCS5D01G244600 chr1B 83.099 71 9 2 1801 1871 640400593 640400526 1.050000e-05 62.1
27 TraesCS5D01G244600 chrUn 92.754 69 5 0 281 349 330766038 330766106 2.220000e-17 100.0
28 TraesCS5D01G244600 chr1D 94.595 37 2 0 1835 1871 464166958 464166922 1.350000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G244600 chr5D 353074759 353078248 3489 True 6445.00 6445 100.0000 1 3490 1 chr5D.!!$R2 3489
1 TraesCS5D01G244600 chr5B 416158319 416161224 2905 True 2120.75 4148 88.3050 680 3490 2 chr5B.!!$R1 2810
2 TraesCS5D01G244600 chr5A 452686550 452689560 3010 False 3755.00 3755 89.4110 468 3485 1 chr5A.!!$F1 3017
3 TraesCS5D01G244600 chr6A 555420587 555421364 777 True 372.00 636 92.4175 1513 2173 2 chr6A.!!$R4 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.032952 TAGCCACAACACTCCGTGAC 59.967 55.0 0.38 0.0 36.96 3.67 F
286 287 0.100682 TCTGTGGATCGCGCTTAGAC 59.899 55.0 5.56 0.0 0.00 2.59 F
1036 1041 0.105224 TCACAGCCGTTTTTCTCCGA 59.895 50.0 0.00 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 2145 1.348036 AGCTTGTCCAGGTAGTTGTCC 59.652 52.381 0.00 0.0 0.0 4.02 R
2170 2340 1.758514 GTCCTCCGAGCTCCATCCA 60.759 63.158 8.47 0.0 0.0 3.41 R
2643 2832 0.035152 AATGAGATTCCGCACAGCCA 60.035 50.000 0.00 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.963140 CAGCCGCATCTTATATATGTCAG 57.037 43.478 0.00 0.00 0.00 3.51
23 24 5.654497 CAGCCGCATCTTATATATGTCAGA 58.346 41.667 0.00 0.00 0.00 3.27
24 25 5.747675 CAGCCGCATCTTATATATGTCAGAG 59.252 44.000 0.00 0.00 0.00 3.35
25 26 5.046529 GCCGCATCTTATATATGTCAGAGG 58.953 45.833 0.00 0.00 0.00 3.69
27 28 6.038985 CCGCATCTTATATATGTCAGAGGTG 58.961 44.000 2.90 2.90 0.00 4.00
28 29 6.127619 CCGCATCTTATATATGTCAGAGGTGA 60.128 42.308 9.55 0.00 30.90 4.02
35 36 3.366629 GTCAGAGGTGACGGCTGA 58.633 61.111 0.00 2.50 43.75 4.26
36 37 3.366629 TCAGAGGTGACGGCTGAC 58.633 61.111 0.00 0.00 40.22 3.51
49 50 4.436515 CTGACCGAACAGCACACA 57.563 55.556 0.00 0.00 0.00 3.72
50 51 2.689083 CTGACCGAACAGCACACAA 58.311 52.632 0.00 0.00 0.00 3.33
52 53 1.195448 CTGACCGAACAGCACACAATC 59.805 52.381 0.00 0.00 0.00 2.67
53 54 0.163788 GACCGAACAGCACACAATCG 59.836 55.000 0.00 0.00 0.00 3.34
54 55 1.154413 CCGAACAGCACACAATCGC 60.154 57.895 0.00 0.00 32.46 4.58
55 56 1.569003 CGAACAGCACACAATCGCA 59.431 52.632 0.00 0.00 0.00 5.10
56 57 0.041400 CGAACAGCACACAATCGCAA 60.041 50.000 0.00 0.00 0.00 4.85
57 58 1.596709 CGAACAGCACACAATCGCAAA 60.597 47.619 0.00 0.00 0.00 3.68
58 59 2.458951 GAACAGCACACAATCGCAAAA 58.541 42.857 0.00 0.00 0.00 2.44
59 60 2.798976 ACAGCACACAATCGCAAAAT 57.201 40.000 0.00 0.00 0.00 1.82
60 61 3.913548 ACAGCACACAATCGCAAAATA 57.086 38.095 0.00 0.00 0.00 1.40
61 62 3.564511 ACAGCACACAATCGCAAAATAC 58.435 40.909 0.00 0.00 0.00 1.89
62 63 3.004210 ACAGCACACAATCGCAAAATACA 59.996 39.130 0.00 0.00 0.00 2.29
64 65 4.263677 CAGCACACAATCGCAAAATACATC 59.736 41.667 0.00 0.00 0.00 3.06
66 67 5.353956 AGCACACAATCGCAAAATACATCTA 59.646 36.000 0.00 0.00 0.00 1.98
67 68 6.038603 AGCACACAATCGCAAAATACATCTAT 59.961 34.615 0.00 0.00 0.00 1.98
69 70 7.855409 GCACACAATCGCAAAATACATCTATTA 59.145 33.333 0.00 0.00 0.00 0.98
70 71 9.158364 CACACAATCGCAAAATACATCTATTAC 57.842 33.333 0.00 0.00 0.00 1.89
72 73 9.882996 CACAATCGCAAAATACATCTATTACAT 57.117 29.630 0.00 0.00 0.00 2.29
107 108 8.488651 TTTTCATCTACTTTTCGTTCTATCCC 57.511 34.615 0.00 0.00 0.00 3.85
108 109 6.785337 TCATCTACTTTTCGTTCTATCCCA 57.215 37.500 0.00 0.00 0.00 4.37
109 110 7.361457 TCATCTACTTTTCGTTCTATCCCAT 57.639 36.000 0.00 0.00 0.00 4.00
110 111 7.210174 TCATCTACTTTTCGTTCTATCCCATG 58.790 38.462 0.00 0.00 0.00 3.66
111 112 6.540438 TCTACTTTTCGTTCTATCCCATGT 57.460 37.500 0.00 0.00 0.00 3.21
112 113 6.942976 TCTACTTTTCGTTCTATCCCATGTT 58.057 36.000 0.00 0.00 0.00 2.71
113 114 7.391620 TCTACTTTTCGTTCTATCCCATGTTT 58.608 34.615 0.00 0.00 0.00 2.83
114 115 6.496338 ACTTTTCGTTCTATCCCATGTTTC 57.504 37.500 0.00 0.00 0.00 2.78
115 116 6.238648 ACTTTTCGTTCTATCCCATGTTTCT 58.761 36.000 0.00 0.00 0.00 2.52
116 117 6.149474 ACTTTTCGTTCTATCCCATGTTTCTG 59.851 38.462 0.00 0.00 0.00 3.02
117 118 3.531538 TCGTTCTATCCCATGTTTCTGC 58.468 45.455 0.00 0.00 0.00 4.26
118 119 3.197766 TCGTTCTATCCCATGTTTCTGCT 59.802 43.478 0.00 0.00 0.00 4.24
119 120 4.404394 TCGTTCTATCCCATGTTTCTGCTA 59.596 41.667 0.00 0.00 0.00 3.49
120 121 5.070446 TCGTTCTATCCCATGTTTCTGCTAT 59.930 40.000 0.00 0.00 0.00 2.97
121 122 5.406780 CGTTCTATCCCATGTTTCTGCTATC 59.593 44.000 0.00 0.00 0.00 2.08
122 123 6.529220 GTTCTATCCCATGTTTCTGCTATCT 58.471 40.000 0.00 0.00 0.00 1.98
123 124 6.352016 TCTATCCCATGTTTCTGCTATCTC 57.648 41.667 0.00 0.00 0.00 2.75
124 125 3.459232 TCCCATGTTTCTGCTATCTCG 57.541 47.619 0.00 0.00 0.00 4.04
125 126 2.766263 TCCCATGTTTCTGCTATCTCGT 59.234 45.455 0.00 0.00 0.00 4.18
126 127 3.197766 TCCCATGTTTCTGCTATCTCGTT 59.802 43.478 0.00 0.00 0.00 3.85
127 128 3.557595 CCCATGTTTCTGCTATCTCGTTC 59.442 47.826 0.00 0.00 0.00 3.95
128 129 4.437239 CCATGTTTCTGCTATCTCGTTCT 58.563 43.478 0.00 0.00 0.00 3.01
129 130 4.872691 CCATGTTTCTGCTATCTCGTTCTT 59.127 41.667 0.00 0.00 0.00 2.52
130 131 5.006165 CCATGTTTCTGCTATCTCGTTCTTC 59.994 44.000 0.00 0.00 0.00 2.87
131 132 5.134202 TGTTTCTGCTATCTCGTTCTTCA 57.866 39.130 0.00 0.00 0.00 3.02
132 133 5.724328 TGTTTCTGCTATCTCGTTCTTCAT 58.276 37.500 0.00 0.00 0.00 2.57
133 134 6.166279 TGTTTCTGCTATCTCGTTCTTCATT 58.834 36.000 0.00 0.00 0.00 2.57
134 135 6.091305 TGTTTCTGCTATCTCGTTCTTCATTG 59.909 38.462 0.00 0.00 0.00 2.82
135 136 5.330455 TCTGCTATCTCGTTCTTCATTGT 57.670 39.130 0.00 0.00 0.00 2.71
136 137 5.724328 TCTGCTATCTCGTTCTTCATTGTT 58.276 37.500 0.00 0.00 0.00 2.83
137 138 5.807520 TCTGCTATCTCGTTCTTCATTGTTC 59.192 40.000 0.00 0.00 0.00 3.18
138 139 5.724328 TGCTATCTCGTTCTTCATTGTTCT 58.276 37.500 0.00 0.00 0.00 3.01
139 140 6.166279 TGCTATCTCGTTCTTCATTGTTCTT 58.834 36.000 0.00 0.00 0.00 2.52
140 141 6.650807 TGCTATCTCGTTCTTCATTGTTCTTT 59.349 34.615 0.00 0.00 0.00 2.52
141 142 6.958193 GCTATCTCGTTCTTCATTGTTCTTTG 59.042 38.462 0.00 0.00 0.00 2.77
142 143 6.867662 ATCTCGTTCTTCATTGTTCTTTGT 57.132 33.333 0.00 0.00 0.00 2.83
143 144 6.048073 TCTCGTTCTTCATTGTTCTTTGTG 57.952 37.500 0.00 0.00 0.00 3.33
144 145 5.584649 TCTCGTTCTTCATTGTTCTTTGTGT 59.415 36.000 0.00 0.00 0.00 3.72
145 146 6.093495 TCTCGTTCTTCATTGTTCTTTGTGTT 59.907 34.615 0.00 0.00 0.00 3.32
146 147 6.027131 TCGTTCTTCATTGTTCTTTGTGTTG 58.973 36.000 0.00 0.00 0.00 3.33
147 148 5.229887 CGTTCTTCATTGTTCTTTGTGTTGG 59.770 40.000 0.00 0.00 0.00 3.77
148 149 6.329496 GTTCTTCATTGTTCTTTGTGTTGGA 58.671 36.000 0.00 0.00 0.00 3.53
149 150 6.135290 TCTTCATTGTTCTTTGTGTTGGAG 57.865 37.500 0.00 0.00 0.00 3.86
150 151 5.885352 TCTTCATTGTTCTTTGTGTTGGAGA 59.115 36.000 0.00 0.00 0.00 3.71
151 152 5.756195 TCATTGTTCTTTGTGTTGGAGAG 57.244 39.130 0.00 0.00 0.00 3.20
152 153 4.036734 TCATTGTTCTTTGTGTTGGAGAGC 59.963 41.667 0.00 0.00 0.00 4.09
153 154 3.281727 TGTTCTTTGTGTTGGAGAGCT 57.718 42.857 0.00 0.00 0.00 4.09
154 155 2.945008 TGTTCTTTGTGTTGGAGAGCTG 59.055 45.455 0.00 0.00 0.00 4.24
155 156 2.945668 GTTCTTTGTGTTGGAGAGCTGT 59.054 45.455 0.00 0.00 0.00 4.40
156 157 2.564771 TCTTTGTGTTGGAGAGCTGTG 58.435 47.619 0.00 0.00 0.00 3.66
157 158 2.170397 TCTTTGTGTTGGAGAGCTGTGA 59.830 45.455 0.00 0.00 0.00 3.58
158 159 2.708216 TTGTGTTGGAGAGCTGTGAA 57.292 45.000 0.00 0.00 0.00 3.18
159 160 2.936919 TGTGTTGGAGAGCTGTGAAT 57.063 45.000 0.00 0.00 0.00 2.57
160 161 2.771089 TGTGTTGGAGAGCTGTGAATC 58.229 47.619 0.00 0.00 0.00 2.52
161 162 2.079925 GTGTTGGAGAGCTGTGAATCC 58.920 52.381 0.00 0.00 0.00 3.01
162 163 1.003580 TGTTGGAGAGCTGTGAATCCC 59.996 52.381 0.00 0.00 0.00 3.85
163 164 0.250234 TTGGAGAGCTGTGAATCCCG 59.750 55.000 0.00 0.00 0.00 5.14
164 165 0.614697 TGGAGAGCTGTGAATCCCGA 60.615 55.000 0.00 0.00 0.00 5.14
165 166 0.103937 GGAGAGCTGTGAATCCCGAG 59.896 60.000 0.00 0.00 0.00 4.63
166 167 0.103937 GAGAGCTGTGAATCCCGAGG 59.896 60.000 0.00 0.00 0.00 4.63
167 168 1.522580 GAGCTGTGAATCCCGAGGC 60.523 63.158 0.00 0.00 0.00 4.70
168 169 1.965754 GAGCTGTGAATCCCGAGGCT 61.966 60.000 0.00 0.00 0.00 4.58
169 170 1.522580 GCTGTGAATCCCGAGGCTC 60.523 63.158 3.87 3.87 0.00 4.70
170 171 1.965754 GCTGTGAATCCCGAGGCTCT 61.966 60.000 13.50 0.00 0.00 4.09
171 172 1.403814 CTGTGAATCCCGAGGCTCTA 58.596 55.000 13.50 0.00 0.00 2.43
172 173 1.339610 CTGTGAATCCCGAGGCTCTAG 59.660 57.143 13.50 3.54 0.00 2.43
173 174 0.676736 GTGAATCCCGAGGCTCTAGG 59.323 60.000 13.50 13.14 0.00 3.02
174 175 0.556258 TGAATCCCGAGGCTCTAGGA 59.444 55.000 21.14 21.14 0.00 2.94
175 176 1.253100 GAATCCCGAGGCTCTAGGAG 58.747 60.000 22.60 9.03 0.00 3.69
176 177 0.558712 AATCCCGAGGCTCTAGGAGT 59.441 55.000 22.60 19.05 31.39 3.85
177 178 0.558712 ATCCCGAGGCTCTAGGAGTT 59.441 55.000 22.60 9.20 31.39 3.01
178 179 0.395862 TCCCGAGGCTCTAGGAGTTG 60.396 60.000 16.62 0.00 31.39 3.16
179 180 0.684805 CCCGAGGCTCTAGGAGTTGT 60.685 60.000 13.50 0.00 31.39 3.32
180 181 1.187087 CCGAGGCTCTAGGAGTTGTT 58.813 55.000 13.50 0.00 31.39 2.83
181 182 1.134965 CCGAGGCTCTAGGAGTTGTTG 60.135 57.143 13.50 0.00 31.39 3.33
182 183 1.819288 CGAGGCTCTAGGAGTTGTTGA 59.181 52.381 13.50 0.00 31.39 3.18
183 184 2.231478 CGAGGCTCTAGGAGTTGTTGAA 59.769 50.000 13.50 0.00 31.39 2.69
184 185 3.591023 GAGGCTCTAGGAGTTGTTGAAC 58.409 50.000 7.40 0.00 31.39 3.18
185 186 2.303311 AGGCTCTAGGAGTTGTTGAACC 59.697 50.000 0.00 0.00 31.81 3.62
186 187 2.338500 GCTCTAGGAGTTGTTGAACCG 58.662 52.381 0.00 0.00 31.81 4.44
187 188 2.029290 GCTCTAGGAGTTGTTGAACCGA 60.029 50.000 0.00 0.00 31.81 4.69
188 189 3.576648 CTCTAGGAGTTGTTGAACCGAC 58.423 50.000 0.00 0.00 31.81 4.79
189 190 2.298163 TCTAGGAGTTGTTGAACCGACC 59.702 50.000 0.00 0.00 31.81 4.79
190 191 1.129058 AGGAGTTGTTGAACCGACCT 58.871 50.000 0.00 0.00 31.81 3.85
191 192 2.322658 AGGAGTTGTTGAACCGACCTA 58.677 47.619 0.00 0.00 32.45 3.08
192 193 2.299297 AGGAGTTGTTGAACCGACCTAG 59.701 50.000 0.00 0.00 32.45 3.02
193 194 2.612221 GGAGTTGTTGAACCGACCTAGG 60.612 54.545 7.41 7.41 31.81 3.02
194 195 1.346722 AGTTGTTGAACCGACCTAGGG 59.653 52.381 14.81 0.00 35.02 3.53
195 196 0.035739 TTGTTGAACCGACCTAGGGC 59.964 55.000 14.81 9.80 35.02 5.19
196 197 1.122632 TGTTGAACCGACCTAGGGCA 61.123 55.000 16.92 0.00 35.02 5.36
197 198 0.391263 GTTGAACCGACCTAGGGCAG 60.391 60.000 16.92 5.68 35.02 4.85
198 199 2.180159 TTGAACCGACCTAGGGCAGC 62.180 60.000 16.92 0.36 35.02 5.25
199 200 3.387225 GAACCGACCTAGGGCAGCC 62.387 68.421 16.92 1.26 35.02 4.85
211 212 3.200522 GCAGCCCATAGCCACAAC 58.799 61.111 0.00 0.00 45.47 3.32
212 213 1.678635 GCAGCCCATAGCCACAACA 60.679 57.895 0.00 0.00 45.47 3.33
213 214 1.937546 GCAGCCCATAGCCACAACAC 61.938 60.000 0.00 0.00 45.47 3.32
214 215 0.322816 CAGCCCATAGCCACAACACT 60.323 55.000 0.00 0.00 45.47 3.55
215 216 0.035056 AGCCCATAGCCACAACACTC 60.035 55.000 0.00 0.00 45.47 3.51
216 217 1.032114 GCCCATAGCCACAACACTCC 61.032 60.000 0.00 0.00 34.35 3.85
217 218 0.744414 CCCATAGCCACAACACTCCG 60.744 60.000 0.00 0.00 0.00 4.63
218 219 0.036388 CCATAGCCACAACACTCCGT 60.036 55.000 0.00 0.00 0.00 4.69
219 220 1.078709 CATAGCCACAACACTCCGTG 58.921 55.000 0.00 0.00 39.75 4.94
220 221 0.973632 ATAGCCACAACACTCCGTGA 59.026 50.000 0.38 0.00 36.96 4.35
221 222 0.032952 TAGCCACAACACTCCGTGAC 59.967 55.000 0.38 0.00 36.96 3.67
222 223 2.594962 GCCACAACACTCCGTGACG 61.595 63.158 0.00 0.00 36.96 4.35
232 233 4.078516 CCGTGACGGGGTCCCTTC 62.079 72.222 17.80 7.08 44.15 3.46
233 234 2.995574 CGTGACGGGGTCCCTTCT 60.996 66.667 8.15 0.00 35.64 2.85
234 235 1.679977 CGTGACGGGGTCCCTTCTA 60.680 63.158 8.15 0.00 35.64 2.10
235 236 1.664321 CGTGACGGGGTCCCTTCTAG 61.664 65.000 8.15 4.37 35.64 2.43
236 237 0.324091 GTGACGGGGTCCCTTCTAGA 60.324 60.000 8.15 0.00 35.64 2.43
237 238 0.635009 TGACGGGGTCCCTTCTAGAT 59.365 55.000 8.15 0.00 35.64 1.98
238 239 1.041437 GACGGGGTCCCTTCTAGATG 58.959 60.000 8.15 0.00 32.36 2.90
239 240 0.338814 ACGGGGTCCCTTCTAGATGT 59.661 55.000 8.15 0.00 0.00 3.06
240 241 0.753262 CGGGGTCCCTTCTAGATGTG 59.247 60.000 8.15 0.00 0.00 3.21
241 242 1.880941 GGGGTCCCTTCTAGATGTGT 58.119 55.000 8.15 0.00 0.00 3.72
242 243 1.486726 GGGGTCCCTTCTAGATGTGTG 59.513 57.143 8.15 0.00 0.00 3.82
243 244 2.188817 GGGTCCCTTCTAGATGTGTGT 58.811 52.381 0.00 0.00 0.00 3.72
244 245 2.093447 GGGTCCCTTCTAGATGTGTGTG 60.093 54.545 0.00 0.00 0.00 3.82
245 246 2.093447 GGTCCCTTCTAGATGTGTGTGG 60.093 54.545 0.00 0.00 0.00 4.17
246 247 2.567615 GTCCCTTCTAGATGTGTGTGGT 59.432 50.000 0.00 0.00 0.00 4.16
247 248 3.008049 GTCCCTTCTAGATGTGTGTGGTT 59.992 47.826 0.00 0.00 0.00 3.67
248 249 3.650942 TCCCTTCTAGATGTGTGTGGTTT 59.349 43.478 0.00 0.00 0.00 3.27
249 250 4.003648 CCCTTCTAGATGTGTGTGGTTTC 58.996 47.826 0.00 0.00 0.00 2.78
250 251 4.504864 CCCTTCTAGATGTGTGTGGTTTCA 60.505 45.833 0.00 0.00 0.00 2.69
251 252 4.692625 CCTTCTAGATGTGTGTGGTTTCAG 59.307 45.833 0.00 0.00 0.00 3.02
252 253 5.511373 CCTTCTAGATGTGTGTGGTTTCAGA 60.511 44.000 0.00 0.00 0.00 3.27
253 254 5.745312 TCTAGATGTGTGTGGTTTCAGAT 57.255 39.130 0.00 0.00 0.00 2.90
254 255 6.114187 TCTAGATGTGTGTGGTTTCAGATT 57.886 37.500 0.00 0.00 0.00 2.40
255 256 6.166279 TCTAGATGTGTGTGGTTTCAGATTC 58.834 40.000 0.00 0.00 0.00 2.52
256 257 4.978099 AGATGTGTGTGGTTTCAGATTCT 58.022 39.130 0.00 0.00 0.00 2.40
257 258 4.999950 AGATGTGTGTGGTTTCAGATTCTC 59.000 41.667 0.00 0.00 0.00 2.87
258 259 4.149511 TGTGTGTGGTTTCAGATTCTCA 57.850 40.909 0.00 0.00 0.00 3.27
259 260 4.129380 TGTGTGTGGTTTCAGATTCTCAG 58.871 43.478 0.00 0.00 0.00 3.35
260 261 4.141733 TGTGTGTGGTTTCAGATTCTCAGA 60.142 41.667 0.00 0.00 0.00 3.27
261 262 4.816385 GTGTGTGGTTTCAGATTCTCAGAA 59.184 41.667 0.00 0.00 0.00 3.02
262 263 5.049818 GTGTGTGGTTTCAGATTCTCAGAAG 60.050 44.000 0.00 0.00 0.00 2.85
263 264 5.059833 GTGTGGTTTCAGATTCTCAGAAGT 58.940 41.667 0.00 0.00 0.00 3.01
264 265 5.529060 GTGTGGTTTCAGATTCTCAGAAGTT 59.471 40.000 0.00 0.00 0.00 2.66
265 266 6.038714 GTGTGGTTTCAGATTCTCAGAAGTTT 59.961 38.462 0.00 0.00 0.00 2.66
266 267 6.603201 TGTGGTTTCAGATTCTCAGAAGTTTT 59.397 34.615 0.00 0.00 0.00 2.43
267 268 7.122650 TGTGGTTTCAGATTCTCAGAAGTTTTT 59.877 33.333 0.00 0.00 0.00 1.94
268 269 7.645735 GTGGTTTCAGATTCTCAGAAGTTTTTC 59.354 37.037 0.00 0.00 0.00 2.29
269 270 7.557719 TGGTTTCAGATTCTCAGAAGTTTTTCT 59.442 33.333 0.00 0.00 44.45 2.52
279 280 2.480419 AGAAGTTTTTCTGTGGATCGCG 59.520 45.455 0.00 0.00 42.04 5.87
280 281 0.517316 AGTTTTTCTGTGGATCGCGC 59.483 50.000 0.00 0.00 0.00 6.86
281 282 0.517316 GTTTTTCTGTGGATCGCGCT 59.483 50.000 5.56 0.00 0.00 5.92
282 283 1.069227 GTTTTTCTGTGGATCGCGCTT 60.069 47.619 5.56 0.00 0.00 4.68
283 284 2.087501 TTTTCTGTGGATCGCGCTTA 57.912 45.000 5.56 0.00 0.00 3.09
284 285 1.640428 TTTCTGTGGATCGCGCTTAG 58.360 50.000 5.56 0.00 0.00 2.18
285 286 0.815095 TTCTGTGGATCGCGCTTAGA 59.185 50.000 5.56 0.00 0.00 2.10
286 287 0.100682 TCTGTGGATCGCGCTTAGAC 59.899 55.000 5.56 0.00 0.00 2.59
287 288 1.202973 CTGTGGATCGCGCTTAGACG 61.203 60.000 5.56 0.00 0.00 4.18
288 289 1.226603 GTGGATCGCGCTTAGACGT 60.227 57.895 5.56 0.00 34.88 4.34
289 290 1.226575 TGGATCGCGCTTAGACGTG 60.227 57.895 5.56 3.91 44.65 4.49
292 293 2.202440 TCGCGCTTAGACGTGAGC 60.202 61.111 5.56 0.00 46.67 4.26
293 294 2.202492 CGCGCTTAGACGTGAGCT 60.202 61.111 5.56 0.00 46.13 4.09
294 295 1.062047 CGCGCTTAGACGTGAGCTA 59.938 57.895 5.56 0.00 46.13 3.32
295 296 1.194896 CGCGCTTAGACGTGAGCTAC 61.195 60.000 5.56 0.00 46.13 3.58
304 305 2.342279 GTGAGCTACGGTGCACCA 59.658 61.111 34.16 16.11 35.14 4.17
305 306 2.027625 GTGAGCTACGGTGCACCAC 61.028 63.158 34.16 19.40 35.14 4.16
317 318 2.825982 CACCACCCTCGGTGTTGA 59.174 61.111 9.84 0.00 46.82 3.18
318 319 1.147376 CACCACCCTCGGTGTTGAA 59.853 57.895 9.84 0.00 46.82 2.69
319 320 0.884704 CACCACCCTCGGTGTTGAAG 60.885 60.000 9.84 0.00 46.82 3.02
321 322 3.981313 ACCCTCGGTGTTGAAGGT 58.019 55.556 0.00 0.00 32.98 3.50
322 323 3.152662 ACCCTCGGTGTTGAAGGTA 57.847 52.632 0.00 0.00 30.83 3.08
323 324 0.683412 ACCCTCGGTGTTGAAGGTAC 59.317 55.000 0.00 0.00 30.83 3.34
324 325 0.682852 CCCTCGGTGTTGAAGGTACA 59.317 55.000 0.00 0.00 0.00 2.90
325 326 1.607251 CCCTCGGTGTTGAAGGTACAC 60.607 57.143 0.00 0.00 43.96 2.90
326 327 1.069513 CCTCGGTGTTGAAGGTACACA 59.930 52.381 8.22 0.00 45.95 3.72
327 328 2.404215 CTCGGTGTTGAAGGTACACAG 58.596 52.381 8.22 4.51 45.95 3.66
328 329 1.758280 TCGGTGTTGAAGGTACACAGT 59.242 47.619 8.22 0.00 45.95 3.55
329 330 1.864711 CGGTGTTGAAGGTACACAGTG 59.135 52.381 0.00 0.00 45.95 3.66
330 331 2.482316 CGGTGTTGAAGGTACACAGTGA 60.482 50.000 7.81 0.00 45.95 3.41
331 332 3.740115 GGTGTTGAAGGTACACAGTGAT 58.260 45.455 7.81 0.00 45.95 3.06
332 333 3.498397 GGTGTTGAAGGTACACAGTGATG 59.502 47.826 7.81 0.00 45.95 3.07
333 334 4.127171 GTGTTGAAGGTACACAGTGATGT 58.873 43.478 7.81 0.05 44.08 3.06
334 335 4.024893 GTGTTGAAGGTACACAGTGATGTG 60.025 45.833 7.81 6.83 44.08 3.21
342 343 2.650900 CACAGTGATGTGTTCGTGTG 57.349 50.000 0.00 0.00 36.28 3.82
343 344 0.937304 ACAGTGATGTGTTCGTGTGC 59.063 50.000 0.00 0.00 0.00 4.57
344 345 0.111134 CAGTGATGTGTTCGTGTGCG 60.111 55.000 0.00 0.00 39.92 5.34
345 346 0.249280 AGTGATGTGTTCGTGTGCGA 60.249 50.000 0.00 0.00 46.36 5.10
354 355 3.719588 TCGTGTGCGAACAAAATCG 57.280 47.368 0.00 0.00 44.92 3.34
355 356 0.931702 TCGTGTGCGAACAAAATCGT 59.068 45.000 0.00 0.00 44.92 3.73
356 357 1.071107 TCGTGTGCGAACAAAATCGTC 60.071 47.619 0.00 0.00 44.92 4.20
357 358 1.332465 CGTGTGCGAACAAAATCGTCA 60.332 47.619 0.00 0.00 44.49 4.35
358 359 2.710760 GTGTGCGAACAAAATCGTCAA 58.289 42.857 0.00 0.00 44.49 3.18
359 360 3.102276 GTGTGCGAACAAAATCGTCAAA 58.898 40.909 0.00 0.00 44.49 2.69
360 361 3.062124 GTGTGCGAACAAAATCGTCAAAC 60.062 43.478 0.00 0.00 44.49 2.93
361 362 2.466205 GTGCGAACAAAATCGTCAAACC 59.534 45.455 0.00 0.00 44.49 3.27
362 363 1.706597 GCGAACAAAATCGTCAAACCG 59.293 47.619 0.00 0.00 44.49 4.44
363 364 2.303537 CGAACAAAATCGTCAAACCGG 58.696 47.619 0.00 0.00 38.01 5.28
364 365 2.286536 CGAACAAAATCGTCAAACCGGT 60.287 45.455 0.00 0.00 38.01 5.28
365 366 3.697982 GAACAAAATCGTCAAACCGGTT 58.302 40.909 15.86 15.86 31.23 4.44
366 367 3.073144 ACAAAATCGTCAAACCGGTTG 57.927 42.857 23.08 15.06 38.71 3.77
367 368 2.424246 ACAAAATCGTCAAACCGGTTGT 59.576 40.909 23.08 8.11 38.47 3.32
368 369 3.040099 CAAAATCGTCAAACCGGTTGTC 58.960 45.455 23.08 13.07 38.47 3.18
369 370 1.956297 AATCGTCAAACCGGTTGTCA 58.044 45.000 23.08 4.65 38.47 3.58
370 371 1.956297 ATCGTCAAACCGGTTGTCAA 58.044 45.000 23.08 6.37 38.47 3.18
371 372 1.735386 TCGTCAAACCGGTTGTCAAA 58.265 45.000 23.08 4.11 38.47 2.69
372 373 1.397692 TCGTCAAACCGGTTGTCAAAC 59.602 47.619 23.08 13.27 38.47 2.93
373 374 1.817609 GTCAAACCGGTTGTCAAACG 58.182 50.000 23.08 16.19 38.47 3.60
374 375 1.397692 GTCAAACCGGTTGTCAAACGA 59.602 47.619 24.28 6.28 38.47 3.85
375 376 2.082231 TCAAACCGGTTGTCAAACGAA 58.918 42.857 24.28 1.67 38.47 3.85
376 377 2.486982 TCAAACCGGTTGTCAAACGAAA 59.513 40.909 24.28 2.01 38.47 3.46
377 378 2.836479 AACCGGTTGTCAAACGAAAG 57.164 45.000 24.28 10.17 37.15 2.62
378 379 3.671164 CAAACCGGTTGTCAAACGAAAGT 60.671 43.478 24.28 10.82 38.11 2.66
379 380 5.709110 CAAACCGGTTGTCAAACGAAAGTG 61.709 45.833 24.28 12.02 37.07 3.16
418 419 9.418045 TGCCAAAAATTAGATTAAAGTGTTAGC 57.582 29.630 0.00 0.00 0.00 3.09
419 420 9.639601 GCCAAAAATTAGATTAAAGTGTTAGCT 57.360 29.630 0.00 0.00 0.00 3.32
429 430 9.516314 AGATTAAAGTGTTAGCTTTTTGTTGAC 57.484 29.630 0.00 0.00 39.22 3.18
430 431 7.728580 TTAAAGTGTTAGCTTTTTGTTGACG 57.271 32.000 0.00 0.00 39.22 4.35
431 432 4.957759 AGTGTTAGCTTTTTGTTGACGT 57.042 36.364 0.00 0.00 0.00 4.34
432 433 5.305139 AGTGTTAGCTTTTTGTTGACGTT 57.695 34.783 0.00 0.00 0.00 3.99
433 434 5.705902 AGTGTTAGCTTTTTGTTGACGTTT 58.294 33.333 0.00 0.00 0.00 3.60
434 435 5.798434 AGTGTTAGCTTTTTGTTGACGTTTC 59.202 36.000 0.00 0.00 0.00 2.78
435 436 4.789119 TGTTAGCTTTTTGTTGACGTTTCG 59.211 37.500 0.00 0.00 0.00 3.46
436 437 3.750639 AGCTTTTTGTTGACGTTTCGA 57.249 38.095 0.00 0.00 0.00 3.71
437 438 4.287238 AGCTTTTTGTTGACGTTTCGAT 57.713 36.364 0.00 0.00 0.00 3.59
438 439 5.412526 AGCTTTTTGTTGACGTTTCGATA 57.587 34.783 0.00 0.00 0.00 2.92
439 440 5.440685 AGCTTTTTGTTGACGTTTCGATAG 58.559 37.500 0.00 0.00 0.00 2.08
440 441 5.007332 AGCTTTTTGTTGACGTTTCGATAGT 59.993 36.000 0.00 0.00 37.40 2.12
441 442 5.113529 GCTTTTTGTTGACGTTTCGATAGTG 59.886 40.000 0.00 0.00 37.40 2.74
442 443 4.718858 TTTGTTGACGTTTCGATAGTGG 57.281 40.909 0.00 0.00 37.40 4.00
443 444 3.374220 TGTTGACGTTTCGATAGTGGT 57.626 42.857 0.00 0.00 37.40 4.16
444 445 4.502171 TGTTGACGTTTCGATAGTGGTA 57.498 40.909 0.00 0.00 37.40 3.25
445 446 4.478699 TGTTGACGTTTCGATAGTGGTAG 58.521 43.478 0.00 0.00 37.40 3.18
446 447 4.022935 TGTTGACGTTTCGATAGTGGTAGT 60.023 41.667 0.00 0.00 37.40 2.73
447 448 4.771590 TGACGTTTCGATAGTGGTAGTT 57.228 40.909 0.00 0.00 37.40 2.24
448 449 4.726416 TGACGTTTCGATAGTGGTAGTTC 58.274 43.478 0.00 0.00 37.40 3.01
449 450 4.216042 TGACGTTTCGATAGTGGTAGTTCA 59.784 41.667 0.00 0.00 37.40 3.18
450 451 4.730657 ACGTTTCGATAGTGGTAGTTCAG 58.269 43.478 0.00 0.00 37.40 3.02
451 452 4.217118 ACGTTTCGATAGTGGTAGTTCAGT 59.783 41.667 0.00 0.00 37.40 3.41
452 453 4.557690 CGTTTCGATAGTGGTAGTTCAGTG 59.442 45.833 0.00 0.00 37.40 3.66
453 454 5.467705 GTTTCGATAGTGGTAGTTCAGTGT 58.532 41.667 0.00 0.00 37.40 3.55
454 455 4.696899 TCGATAGTGGTAGTTCAGTGTG 57.303 45.455 0.00 0.00 37.40 3.82
455 456 4.329392 TCGATAGTGGTAGTTCAGTGTGA 58.671 43.478 0.00 0.00 37.40 3.58
456 457 4.155462 TCGATAGTGGTAGTTCAGTGTGAC 59.845 45.833 0.00 0.00 37.40 3.67
457 458 4.082949 CGATAGTGGTAGTTCAGTGTGACA 60.083 45.833 0.00 0.00 0.00 3.58
458 459 5.393135 CGATAGTGGTAGTTCAGTGTGACAT 60.393 44.000 0.00 0.00 0.00 3.06
459 460 6.183360 CGATAGTGGTAGTTCAGTGTGACATA 60.183 42.308 0.00 0.00 0.00 2.29
460 461 5.801531 AGTGGTAGTTCAGTGTGACATAA 57.198 39.130 0.00 0.00 0.00 1.90
461 462 6.169557 AGTGGTAGTTCAGTGTGACATAAA 57.830 37.500 0.00 0.00 0.00 1.40
462 463 5.989777 AGTGGTAGTTCAGTGTGACATAAAC 59.010 40.000 0.00 0.00 0.00 2.01
463 464 5.178809 GTGGTAGTTCAGTGTGACATAAACC 59.821 44.000 0.00 0.00 0.00 3.27
464 465 4.387862 GGTAGTTCAGTGTGACATAAACCG 59.612 45.833 0.00 0.00 0.00 4.44
465 466 4.067972 AGTTCAGTGTGACATAAACCGT 57.932 40.909 0.00 0.00 0.00 4.83
466 467 3.807622 AGTTCAGTGTGACATAAACCGTG 59.192 43.478 0.00 0.00 0.00 4.94
467 468 3.737032 TCAGTGTGACATAAACCGTGA 57.263 42.857 0.00 0.00 0.00 4.35
468 469 4.061357 TCAGTGTGACATAAACCGTGAA 57.939 40.909 0.00 0.00 0.00 3.18
469 470 4.637276 TCAGTGTGACATAAACCGTGAAT 58.363 39.130 0.00 0.00 0.00 2.57
470 471 4.450757 TCAGTGTGACATAAACCGTGAATG 59.549 41.667 0.00 0.00 0.00 2.67
471 472 4.213270 CAGTGTGACATAAACCGTGAATGT 59.787 41.667 0.00 0.00 36.57 2.71
472 473 4.819630 AGTGTGACATAAACCGTGAATGTT 59.180 37.500 0.00 0.00 34.09 2.71
513 514 4.761739 TCACATGTTAAGCTTTCCTCTTGG 59.238 41.667 3.20 0.00 0.00 3.61
594 596 2.766875 TACCCGCGATTTGACGTGCA 62.767 55.000 8.23 0.00 41.50 4.57
596 598 1.792057 CCGCGATTTGACGTGCAAC 60.792 57.895 8.23 0.00 41.50 4.17
614 616 5.063438 GTGCAACACGAAAATATCTGAGCTA 59.937 40.000 0.00 0.00 36.32 3.32
615 617 5.063438 TGCAACACGAAAATATCTGAGCTAC 59.937 40.000 0.00 0.00 0.00 3.58
616 618 5.292101 GCAACACGAAAATATCTGAGCTACT 59.708 40.000 0.00 0.00 0.00 2.57
617 619 6.700020 CAACACGAAAATATCTGAGCTACTG 58.300 40.000 0.00 0.00 0.00 2.74
631 633 2.726633 GCTACTGCTTTTGTTCGCAAA 58.273 42.857 0.00 0.00 44.48 3.68
632 634 2.721090 GCTACTGCTTTTGTTCGCAAAG 59.279 45.455 0.00 0.00 46.36 2.77
643 645 2.421775 TGTTCGCAAAGAAACAGAGCAA 59.578 40.909 0.00 0.00 41.10 3.91
647 649 3.002656 TCGCAAAGAAACAGAGCAAAGAG 59.997 43.478 0.00 0.00 0.00 2.85
651 653 5.237344 GCAAAGAAACAGAGCAAAGAGTCTA 59.763 40.000 0.00 0.00 0.00 2.59
669 671 4.593206 AGTCTAGTTTCATGACCTGTCCAA 59.407 41.667 0.00 0.00 0.00 3.53
738 742 6.658816 TGCTAATACAAACCAGTTGATCACAT 59.341 34.615 0.00 0.00 39.87 3.21
763 767 1.600076 CTGCTTGCCTGCTGACAGT 60.600 57.895 3.99 0.00 42.81 3.55
821 826 3.510388 TCTTGTCTGGATTAGAGCGTG 57.490 47.619 0.00 0.00 35.70 5.34
1019 1024 2.636412 CGCCCGTCTCCTTCACTCA 61.636 63.158 0.00 0.00 0.00 3.41
1036 1041 0.105224 TCACAGCCGTTTTTCTCCGA 59.895 50.000 0.00 0.00 0.00 4.55
1075 1084 2.647875 CCGCATCCAAACGCCAAA 59.352 55.556 0.00 0.00 0.00 3.28
1375 1384 0.178831 AGATGGGGTTCACCTTCCCT 60.179 55.000 3.80 0.00 43.00 4.20
2170 2340 2.757917 GACTCCCTCAGGCGAGCT 60.758 66.667 8.68 0.00 38.00 4.09
2347 2520 0.445043 GCGTCGGCCGTTAATCTTTT 59.555 50.000 27.15 0.00 39.32 2.27
2348 2521 1.528400 GCGTCGGCCGTTAATCTTTTC 60.528 52.381 27.15 3.26 39.32 2.29
2351 2524 3.259902 GTCGGCCGTTAATCTTTTCTCT 58.740 45.455 27.15 0.00 0.00 3.10
2532 2712 2.148768 AGAAACAACGTCCCGGAAATC 58.851 47.619 0.73 0.00 0.00 2.17
2546 2726 2.223144 CGGAAATCAACGCTGTTCTTCA 59.777 45.455 0.00 0.00 0.00 3.02
2574 2759 2.064242 AACCCTTGTGTTCCCCTCCG 62.064 60.000 0.00 0.00 0.00 4.63
2576 2761 1.003718 CCTTGTGTTCCCCTCCGTC 60.004 63.158 0.00 0.00 0.00 4.79
2577 2762 1.481056 CCTTGTGTTCCCCTCCGTCT 61.481 60.000 0.00 0.00 0.00 4.18
2578 2763 0.037232 CTTGTGTTCCCCTCCGTCTC 60.037 60.000 0.00 0.00 0.00 3.36
2579 2764 1.477685 TTGTGTTCCCCTCCGTCTCC 61.478 60.000 0.00 0.00 0.00 3.71
2580 2765 1.911766 GTGTTCCCCTCCGTCTCCA 60.912 63.158 0.00 0.00 0.00 3.86
2581 2766 1.080354 TGTTCCCCTCCGTCTCCAT 59.920 57.895 0.00 0.00 0.00 3.41
2640 2829 1.052124 TGGATACCGTTAGGGCCTGG 61.052 60.000 18.53 12.02 43.47 4.45
2641 2830 1.070957 GATACCGTTAGGGCCTGGC 59.929 63.158 18.53 11.05 43.47 4.85
2659 2848 1.817099 CCTGGCTGTGCGGAATCTC 60.817 63.158 0.00 0.00 0.00 2.75
2725 2917 5.869888 GCTTTTGCAGTCAGTACAGTAGTAT 59.130 40.000 0.00 0.00 46.58 2.12
2726 2918 7.033791 GCTTTTGCAGTCAGTACAGTAGTATA 58.966 38.462 0.00 0.00 46.58 1.47
2728 2920 9.419297 CTTTTGCAGTCAGTACAGTAGTATAAA 57.581 33.333 0.00 0.00 31.84 1.40
2888 3113 0.810426 GGGCTACGCTTTACAGAGGC 60.810 60.000 0.00 0.00 0.00 4.70
2939 3170 3.521126 AGTGTTCAGCATACTCCTCCAAT 59.479 43.478 0.00 0.00 0.00 3.16
2956 3187 3.007074 TCCAATTTGCATTGCATGTCTGT 59.993 39.130 12.95 0.00 38.88 3.41
2957 3188 3.124466 CCAATTTGCATTGCATGTCTGTG 59.876 43.478 12.95 5.41 38.88 3.66
2982 3213 3.745975 CCAAGCAAGAACATCTGAACGTA 59.254 43.478 0.00 0.00 0.00 3.57
2989 3220 6.700020 CAAGAACATCTGAACGTACATCATC 58.300 40.000 0.00 0.00 0.00 2.92
3015 3246 1.134491 AGTGGCTGGCGGTAACTAATC 60.134 52.381 0.00 0.00 0.00 1.75
3025 3259 3.063588 GCGGTAACTAATCAGGAAGCAAC 59.936 47.826 0.00 0.00 0.00 4.17
3070 3309 1.527370 GAGGAAAGGGACATCGGGG 59.473 63.158 0.00 0.00 0.00 5.73
3088 3327 1.757949 GGAGGATTAGGGAGCAGCC 59.242 63.158 0.00 0.00 0.00 4.85
3128 3367 2.746277 CCGTCCCTTTCCTTGCCG 60.746 66.667 0.00 0.00 0.00 5.69
3129 3368 2.032071 CGTCCCTTTCCTTGCCGT 59.968 61.111 0.00 0.00 0.00 5.68
3131 3370 1.072505 GTCCCTTTCCTTGCCGTGA 59.927 57.895 0.00 0.00 0.00 4.35
3185 3430 4.444838 CCGTTGTCATCGCCGGGA 62.445 66.667 2.18 0.00 36.84 5.14
3382 3630 2.020131 GCTTGTGAGCGATGGATGG 58.980 57.895 0.00 0.00 39.48 3.51
3383 3631 1.442526 GCTTGTGAGCGATGGATGGG 61.443 60.000 0.00 0.00 39.48 4.00
3387 3635 2.281345 GAGCGATGGATGGGCAGG 60.281 66.667 0.00 0.00 0.00 4.85
3449 3699 1.084289 GTCCTCTTTTAATGCGCCGT 58.916 50.000 4.18 0.00 0.00 5.68
3450 3700 1.083489 TCCTCTTTTAATGCGCCGTG 58.917 50.000 4.18 0.00 0.00 4.94
3485 3735 1.962306 GGACACGGCGCAGGTTAAA 60.962 57.895 13.26 0.00 0.00 1.52
3486 3736 1.495951 GACACGGCGCAGGTTAAAG 59.504 57.895 13.26 0.00 0.00 1.85
3488 3738 3.053896 ACGGCGCAGGTTAAAGCC 61.054 61.111 13.26 0.00 45.67 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.654497 TCTGACATATATAAGATGCGGCTG 58.346 41.667 0.00 0.00 0.00 4.85
2 3 5.046529 CCTCTGACATATATAAGATGCGGC 58.953 45.833 0.00 0.00 0.00 6.53
4 5 6.749578 GTCACCTCTGACATATATAAGATGCG 59.250 42.308 0.00 0.00 45.57 4.73
7 8 6.127591 GCCGTCACCTCTGACATATATAAGAT 60.128 42.308 2.02 0.00 46.47 2.40
8 9 5.183331 GCCGTCACCTCTGACATATATAAGA 59.817 44.000 2.02 0.00 46.47 2.10
9 10 5.184096 AGCCGTCACCTCTGACATATATAAG 59.816 44.000 2.02 0.00 46.47 1.73
10 11 5.048013 CAGCCGTCACCTCTGACATATATAA 60.048 44.000 2.02 0.00 46.47 0.98
11 12 4.459337 CAGCCGTCACCTCTGACATATATA 59.541 45.833 2.02 0.00 46.47 0.86
12 13 3.256879 CAGCCGTCACCTCTGACATATAT 59.743 47.826 2.02 0.00 46.47 0.86
13 14 2.623416 CAGCCGTCACCTCTGACATATA 59.377 50.000 2.02 0.00 46.47 0.86
14 15 1.410517 CAGCCGTCACCTCTGACATAT 59.589 52.381 2.02 0.00 46.47 1.78
16 17 0.900182 TCAGCCGTCACCTCTGACAT 60.900 55.000 2.02 0.00 46.47 3.06
18 19 1.080434 GTCAGCCGTCACCTCTGAC 60.080 63.158 7.97 7.97 46.38 3.51
19 20 2.276116 GGTCAGCCGTCACCTCTGA 61.276 63.158 0.00 0.00 34.78 3.27
20 21 2.262915 GGTCAGCCGTCACCTCTG 59.737 66.667 0.00 0.00 0.00 3.35
32 33 1.195448 GATTGTGTGCTGTTCGGTCAG 59.805 52.381 3.97 3.97 38.35 3.51
33 34 1.225855 GATTGTGTGCTGTTCGGTCA 58.774 50.000 0.00 0.00 0.00 4.02
34 35 0.163788 CGATTGTGTGCTGTTCGGTC 59.836 55.000 0.00 0.00 0.00 4.79
35 36 1.841663 GCGATTGTGTGCTGTTCGGT 61.842 55.000 0.00 0.00 0.00 4.69
36 37 1.154413 GCGATTGTGTGCTGTTCGG 60.154 57.895 0.00 0.00 0.00 4.30
38 39 2.118228 TTTGCGATTGTGTGCTGTTC 57.882 45.000 0.00 0.00 0.00 3.18
39 40 2.575694 TTTTGCGATTGTGTGCTGTT 57.424 40.000 0.00 0.00 0.00 3.16
40 41 2.798976 ATTTTGCGATTGTGTGCTGT 57.201 40.000 0.00 0.00 0.00 4.40
42 43 3.913548 TGTATTTTGCGATTGTGTGCT 57.086 38.095 0.00 0.00 0.00 4.40
44 45 9.158364 GTAATAGATGTATTTTGCGATTGTGTG 57.842 33.333 0.00 0.00 31.04 3.82
45 46 8.888716 TGTAATAGATGTATTTTGCGATTGTGT 58.111 29.630 0.00 0.00 31.04 3.72
81 82 8.943002 GGGATAGAACGAAAAGTAGATGAAAAA 58.057 33.333 0.00 0.00 0.00 1.94
83 84 7.617225 TGGGATAGAACGAAAAGTAGATGAAA 58.383 34.615 0.00 0.00 0.00 2.69
84 85 7.177832 TGGGATAGAACGAAAAGTAGATGAA 57.822 36.000 0.00 0.00 0.00 2.57
85 86 6.785337 TGGGATAGAACGAAAAGTAGATGA 57.215 37.500 0.00 0.00 0.00 2.92
86 87 6.986817 ACATGGGATAGAACGAAAAGTAGATG 59.013 38.462 0.00 0.00 0.00 2.90
87 88 7.125792 ACATGGGATAGAACGAAAAGTAGAT 57.874 36.000 0.00 0.00 0.00 1.98
88 89 6.540438 ACATGGGATAGAACGAAAAGTAGA 57.460 37.500 0.00 0.00 0.00 2.59
90 91 7.333423 CAGAAACATGGGATAGAACGAAAAGTA 59.667 37.037 0.00 0.00 0.00 2.24
91 92 6.149474 CAGAAACATGGGATAGAACGAAAAGT 59.851 38.462 0.00 0.00 0.00 2.66
93 94 5.106317 GCAGAAACATGGGATAGAACGAAAA 60.106 40.000 0.00 0.00 0.00 2.29
94 95 4.394920 GCAGAAACATGGGATAGAACGAAA 59.605 41.667 0.00 0.00 0.00 3.46
95 96 3.938963 GCAGAAACATGGGATAGAACGAA 59.061 43.478 0.00 0.00 0.00 3.85
96 97 3.197766 AGCAGAAACATGGGATAGAACGA 59.802 43.478 0.00 0.00 0.00 3.85
97 98 3.535561 AGCAGAAACATGGGATAGAACG 58.464 45.455 0.00 0.00 0.00 3.95
98 99 6.529220 AGATAGCAGAAACATGGGATAGAAC 58.471 40.000 0.00 0.00 0.00 3.01
99 100 6.517362 CGAGATAGCAGAAACATGGGATAGAA 60.517 42.308 0.00 0.00 0.00 2.10
100 101 5.047731 CGAGATAGCAGAAACATGGGATAGA 60.048 44.000 0.00 0.00 0.00 1.98
102 103 4.588951 ACGAGATAGCAGAAACATGGGATA 59.411 41.667 0.00 0.00 0.00 2.59
103 104 3.389329 ACGAGATAGCAGAAACATGGGAT 59.611 43.478 0.00 0.00 0.00 3.85
104 105 2.766263 ACGAGATAGCAGAAACATGGGA 59.234 45.455 0.00 0.00 0.00 4.37
105 106 3.185246 ACGAGATAGCAGAAACATGGG 57.815 47.619 0.00 0.00 0.00 4.00
106 107 4.437239 AGAACGAGATAGCAGAAACATGG 58.563 43.478 0.00 0.00 0.00 3.66
107 108 5.578336 TGAAGAACGAGATAGCAGAAACATG 59.422 40.000 0.00 0.00 0.00 3.21
108 109 5.724328 TGAAGAACGAGATAGCAGAAACAT 58.276 37.500 0.00 0.00 0.00 2.71
109 110 5.134202 TGAAGAACGAGATAGCAGAAACA 57.866 39.130 0.00 0.00 0.00 2.83
110 111 6.091441 ACAATGAAGAACGAGATAGCAGAAAC 59.909 38.462 0.00 0.00 0.00 2.78
111 112 6.166279 ACAATGAAGAACGAGATAGCAGAAA 58.834 36.000 0.00 0.00 0.00 2.52
112 113 5.724328 ACAATGAAGAACGAGATAGCAGAA 58.276 37.500 0.00 0.00 0.00 3.02
113 114 5.330455 ACAATGAAGAACGAGATAGCAGA 57.670 39.130 0.00 0.00 0.00 4.26
114 115 5.809562 AGAACAATGAAGAACGAGATAGCAG 59.190 40.000 0.00 0.00 0.00 4.24
115 116 5.724328 AGAACAATGAAGAACGAGATAGCA 58.276 37.500 0.00 0.00 0.00 3.49
116 117 6.654793 AAGAACAATGAAGAACGAGATAGC 57.345 37.500 0.00 0.00 0.00 2.97
117 118 7.954248 CACAAAGAACAATGAAGAACGAGATAG 59.046 37.037 0.00 0.00 0.00 2.08
118 119 7.441157 ACACAAAGAACAATGAAGAACGAGATA 59.559 33.333 0.00 0.00 0.00 1.98
119 120 6.260936 ACACAAAGAACAATGAAGAACGAGAT 59.739 34.615 0.00 0.00 0.00 2.75
120 121 5.584649 ACACAAAGAACAATGAAGAACGAGA 59.415 36.000 0.00 0.00 0.00 4.04
121 122 5.810525 ACACAAAGAACAATGAAGAACGAG 58.189 37.500 0.00 0.00 0.00 4.18
122 123 5.811399 ACACAAAGAACAATGAAGAACGA 57.189 34.783 0.00 0.00 0.00 3.85
123 124 5.229887 CCAACACAAAGAACAATGAAGAACG 59.770 40.000 0.00 0.00 0.00 3.95
124 125 6.329496 TCCAACACAAAGAACAATGAAGAAC 58.671 36.000 0.00 0.00 0.00 3.01
125 126 6.376864 TCTCCAACACAAAGAACAATGAAGAA 59.623 34.615 0.00 0.00 0.00 2.52
126 127 5.885352 TCTCCAACACAAAGAACAATGAAGA 59.115 36.000 0.00 0.00 0.00 2.87
127 128 6.135290 TCTCCAACACAAAGAACAATGAAG 57.865 37.500 0.00 0.00 0.00 3.02
128 129 5.450412 GCTCTCCAACACAAAGAACAATGAA 60.450 40.000 0.00 0.00 0.00 2.57
129 130 4.036734 GCTCTCCAACACAAAGAACAATGA 59.963 41.667 0.00 0.00 0.00 2.57
130 131 4.037208 AGCTCTCCAACACAAAGAACAATG 59.963 41.667 0.00 0.00 0.00 2.82
131 132 4.037208 CAGCTCTCCAACACAAAGAACAAT 59.963 41.667 0.00 0.00 0.00 2.71
132 133 3.378112 CAGCTCTCCAACACAAAGAACAA 59.622 43.478 0.00 0.00 0.00 2.83
133 134 2.945008 CAGCTCTCCAACACAAAGAACA 59.055 45.455 0.00 0.00 0.00 3.18
134 135 2.945668 ACAGCTCTCCAACACAAAGAAC 59.054 45.455 0.00 0.00 0.00 3.01
135 136 2.945008 CACAGCTCTCCAACACAAAGAA 59.055 45.455 0.00 0.00 0.00 2.52
136 137 2.170397 TCACAGCTCTCCAACACAAAGA 59.830 45.455 0.00 0.00 0.00 2.52
137 138 2.564771 TCACAGCTCTCCAACACAAAG 58.435 47.619 0.00 0.00 0.00 2.77
138 139 2.708216 TCACAGCTCTCCAACACAAA 57.292 45.000 0.00 0.00 0.00 2.83
139 140 2.708216 TTCACAGCTCTCCAACACAA 57.292 45.000 0.00 0.00 0.00 3.33
140 141 2.550855 GGATTCACAGCTCTCCAACACA 60.551 50.000 0.00 0.00 0.00 3.72
141 142 2.079925 GGATTCACAGCTCTCCAACAC 58.920 52.381 0.00 0.00 0.00 3.32
142 143 1.003580 GGGATTCACAGCTCTCCAACA 59.996 52.381 0.00 0.00 0.00 3.33
143 144 1.743996 GGGATTCACAGCTCTCCAAC 58.256 55.000 0.00 0.00 0.00 3.77
144 145 0.250234 CGGGATTCACAGCTCTCCAA 59.750 55.000 0.00 0.00 0.00 3.53
145 146 0.614697 TCGGGATTCACAGCTCTCCA 60.615 55.000 0.00 0.00 0.00 3.86
146 147 0.103937 CTCGGGATTCACAGCTCTCC 59.896 60.000 0.00 0.00 0.00 3.71
147 148 0.103937 CCTCGGGATTCACAGCTCTC 59.896 60.000 0.00 0.00 0.00 3.20
148 149 1.965754 GCCTCGGGATTCACAGCTCT 61.966 60.000 0.00 0.00 0.00 4.09
149 150 1.522580 GCCTCGGGATTCACAGCTC 60.523 63.158 0.00 0.00 0.00 4.09
150 151 1.965754 GAGCCTCGGGATTCACAGCT 61.966 60.000 0.00 0.00 0.00 4.24
151 152 1.522580 GAGCCTCGGGATTCACAGC 60.523 63.158 0.00 0.00 0.00 4.40
152 153 1.339610 CTAGAGCCTCGGGATTCACAG 59.660 57.143 0.00 0.00 0.00 3.66
153 154 1.403814 CTAGAGCCTCGGGATTCACA 58.596 55.000 0.00 0.00 0.00 3.58
154 155 0.676736 CCTAGAGCCTCGGGATTCAC 59.323 60.000 1.35 0.00 0.00 3.18
155 156 0.556258 TCCTAGAGCCTCGGGATTCA 59.444 55.000 5.56 0.00 0.00 2.57
156 157 1.253100 CTCCTAGAGCCTCGGGATTC 58.747 60.000 9.29 0.00 0.00 2.52
157 158 0.558712 ACTCCTAGAGCCTCGGGATT 59.441 55.000 9.29 2.78 32.04 3.01
158 159 0.558712 AACTCCTAGAGCCTCGGGAT 59.441 55.000 9.29 0.00 32.04 3.85
159 160 0.395862 CAACTCCTAGAGCCTCGGGA 60.396 60.000 8.69 8.69 32.04 5.14
160 161 0.684805 ACAACTCCTAGAGCCTCGGG 60.685 60.000 0.00 1.19 32.04 5.14
161 162 1.134965 CAACAACTCCTAGAGCCTCGG 60.135 57.143 0.00 0.00 32.04 4.63
162 163 1.819288 TCAACAACTCCTAGAGCCTCG 59.181 52.381 0.00 0.00 32.04 4.63
163 164 3.591023 GTTCAACAACTCCTAGAGCCTC 58.409 50.000 0.00 0.00 32.04 4.70
164 165 2.303311 GGTTCAACAACTCCTAGAGCCT 59.697 50.000 0.00 0.00 32.04 4.58
165 166 2.701107 GGTTCAACAACTCCTAGAGCC 58.299 52.381 0.00 0.00 32.04 4.70
166 167 2.029290 TCGGTTCAACAACTCCTAGAGC 60.029 50.000 0.00 0.00 32.04 4.09
167 168 3.576648 GTCGGTTCAACAACTCCTAGAG 58.423 50.000 0.00 0.00 35.52 2.43
168 169 2.298163 GGTCGGTTCAACAACTCCTAGA 59.702 50.000 0.00 0.00 32.50 2.43
169 170 2.299297 AGGTCGGTTCAACAACTCCTAG 59.701 50.000 0.00 0.00 31.40 3.02
170 171 2.322658 AGGTCGGTTCAACAACTCCTA 58.677 47.619 0.00 0.00 31.40 2.94
171 172 1.129058 AGGTCGGTTCAACAACTCCT 58.871 50.000 0.00 0.00 32.50 3.69
172 173 2.612221 CCTAGGTCGGTTCAACAACTCC 60.612 54.545 0.00 0.00 32.50 3.85
173 174 2.612221 CCCTAGGTCGGTTCAACAACTC 60.612 54.545 8.29 0.00 32.50 3.01
174 175 1.346722 CCCTAGGTCGGTTCAACAACT 59.653 52.381 8.29 0.00 32.50 3.16
175 176 1.804601 CCCTAGGTCGGTTCAACAAC 58.195 55.000 8.29 0.00 0.00 3.32
176 177 0.035739 GCCCTAGGTCGGTTCAACAA 59.964 55.000 8.29 0.00 0.00 2.83
177 178 1.122632 TGCCCTAGGTCGGTTCAACA 61.123 55.000 8.29 0.00 0.00 3.33
178 179 0.391263 CTGCCCTAGGTCGGTTCAAC 60.391 60.000 8.29 0.00 0.00 3.18
179 180 1.980052 CTGCCCTAGGTCGGTTCAA 59.020 57.895 8.29 0.00 0.00 2.69
180 181 2.656069 GCTGCCCTAGGTCGGTTCA 61.656 63.158 8.29 0.00 0.00 3.18
181 182 2.187163 GCTGCCCTAGGTCGGTTC 59.813 66.667 8.29 0.00 0.00 3.62
182 183 3.400054 GGCTGCCCTAGGTCGGTT 61.400 66.667 7.66 0.00 0.00 4.44
185 186 1.821061 CTATGGGCTGCCCTAGGTCG 61.821 65.000 35.80 15.67 45.70 4.79
186 187 2.062070 CTATGGGCTGCCCTAGGTC 58.938 63.158 35.80 11.26 45.70 3.85
187 188 2.150051 GCTATGGGCTGCCCTAGGT 61.150 63.158 35.80 21.51 45.70 3.08
188 189 2.753029 GCTATGGGCTGCCCTAGG 59.247 66.667 35.80 24.75 45.70 3.02
189 190 2.753029 GGCTATGGGCTGCCCTAG 59.247 66.667 35.80 30.35 45.70 3.02
194 195 1.678635 TGTTGTGGCTATGGGCTGC 60.679 57.895 3.83 0.00 41.46 5.25
195 196 0.322816 AGTGTTGTGGCTATGGGCTG 60.323 55.000 3.83 0.00 41.46 4.85
196 197 0.035056 GAGTGTTGTGGCTATGGGCT 60.035 55.000 3.83 0.00 41.46 5.19
197 198 1.032114 GGAGTGTTGTGGCTATGGGC 61.032 60.000 0.00 0.00 40.90 5.36
198 199 0.744414 CGGAGTGTTGTGGCTATGGG 60.744 60.000 0.00 0.00 0.00 4.00
199 200 0.036388 ACGGAGTGTTGTGGCTATGG 60.036 55.000 0.00 0.00 42.51 2.74
200 201 3.532896 ACGGAGTGTTGTGGCTATG 57.467 52.632 0.00 0.00 42.51 2.23
216 217 1.664321 CTAGAAGGGACCCCGTCACG 61.664 65.000 20.36 8.86 45.06 4.35
217 218 0.324091 TCTAGAAGGGACCCCGTCAC 60.324 60.000 20.36 0.00 45.06 3.67
218 219 0.635009 ATCTAGAAGGGACCCCGTCA 59.365 55.000 20.36 7.96 45.06 4.35
219 220 1.041437 CATCTAGAAGGGACCCCGTC 58.959 60.000 7.00 12.29 43.40 4.79
220 221 0.338814 ACATCTAGAAGGGACCCCGT 59.661 55.000 7.00 0.00 41.95 5.28
221 222 0.753262 CACATCTAGAAGGGACCCCG 59.247 60.000 7.00 0.00 41.95 5.73
222 223 1.486726 CACACATCTAGAAGGGACCCC 59.513 57.143 7.00 1.17 0.00 4.95
223 224 2.093447 CACACACATCTAGAAGGGACCC 60.093 54.545 3.81 0.59 0.00 4.46
224 225 2.093447 CCACACACATCTAGAAGGGACC 60.093 54.545 3.81 0.00 0.00 4.46
225 226 2.567615 ACCACACACATCTAGAAGGGAC 59.432 50.000 3.81 0.00 0.00 4.46
226 227 2.902608 ACCACACACATCTAGAAGGGA 58.097 47.619 3.81 0.00 0.00 4.20
227 228 3.703001 AACCACACACATCTAGAAGGG 57.297 47.619 0.00 0.00 0.00 3.95
228 229 4.641396 TGAAACCACACACATCTAGAAGG 58.359 43.478 0.00 0.00 0.00 3.46
229 230 5.541845 TCTGAAACCACACACATCTAGAAG 58.458 41.667 0.00 0.00 0.00 2.85
230 231 5.545063 TCTGAAACCACACACATCTAGAA 57.455 39.130 0.00 0.00 0.00 2.10
231 232 5.745312 ATCTGAAACCACACACATCTAGA 57.255 39.130 0.00 0.00 0.00 2.43
232 233 6.169094 AGAATCTGAAACCACACACATCTAG 58.831 40.000 0.00 0.00 0.00 2.43
233 234 6.114187 AGAATCTGAAACCACACACATCTA 57.886 37.500 0.00 0.00 0.00 1.98
234 235 4.978099 AGAATCTGAAACCACACACATCT 58.022 39.130 0.00 0.00 0.00 2.90
235 236 4.756642 TGAGAATCTGAAACCACACACATC 59.243 41.667 0.00 0.00 34.92 3.06
236 237 4.717877 TGAGAATCTGAAACCACACACAT 58.282 39.130 0.00 0.00 34.92 3.21
237 238 4.129380 CTGAGAATCTGAAACCACACACA 58.871 43.478 0.00 0.00 35.94 3.72
238 239 4.380531 TCTGAGAATCTGAAACCACACAC 58.619 43.478 0.00 0.00 40.26 3.82
239 240 4.687901 TCTGAGAATCTGAAACCACACA 57.312 40.909 0.00 0.00 40.26 3.72
258 259 2.480419 CGCGATCCACAGAAAAACTTCT 59.520 45.455 0.00 0.00 0.00 2.85
259 260 2.839474 CGCGATCCACAGAAAAACTTC 58.161 47.619 0.00 0.00 0.00 3.01
260 261 1.069227 GCGCGATCCACAGAAAAACTT 60.069 47.619 12.10 0.00 0.00 2.66
261 262 0.517316 GCGCGATCCACAGAAAAACT 59.483 50.000 12.10 0.00 0.00 2.66
262 263 0.517316 AGCGCGATCCACAGAAAAAC 59.483 50.000 12.10 0.00 0.00 2.43
263 264 1.234821 AAGCGCGATCCACAGAAAAA 58.765 45.000 12.10 0.00 0.00 1.94
264 265 1.999735 CTAAGCGCGATCCACAGAAAA 59.000 47.619 12.10 0.00 0.00 2.29
265 266 1.203758 TCTAAGCGCGATCCACAGAAA 59.796 47.619 12.10 0.00 0.00 2.52
266 267 0.815095 TCTAAGCGCGATCCACAGAA 59.185 50.000 12.10 0.00 0.00 3.02
267 268 0.100682 GTCTAAGCGCGATCCACAGA 59.899 55.000 12.10 1.54 0.00 3.41
268 269 1.202973 CGTCTAAGCGCGATCCACAG 61.203 60.000 12.10 0.00 0.00 3.66
269 270 1.226575 CGTCTAAGCGCGATCCACA 60.227 57.895 12.10 0.00 0.00 4.17
270 271 1.226603 ACGTCTAAGCGCGATCCAC 60.227 57.895 12.10 0.00 34.88 4.02
271 272 1.226575 CACGTCTAAGCGCGATCCA 60.227 57.895 12.10 0.00 34.88 3.41
272 273 0.930742 CTCACGTCTAAGCGCGATCC 60.931 60.000 12.10 0.00 34.88 3.36
273 274 1.533165 GCTCACGTCTAAGCGCGATC 61.533 60.000 12.10 0.00 34.88 3.69
274 275 1.586564 GCTCACGTCTAAGCGCGAT 60.587 57.895 12.10 0.00 34.88 4.58
275 276 1.363885 TAGCTCACGTCTAAGCGCGA 61.364 55.000 12.10 0.00 43.37 5.87
276 277 1.062047 TAGCTCACGTCTAAGCGCG 59.938 57.895 0.00 0.00 43.37 6.86
277 278 1.194896 CGTAGCTCACGTCTAAGCGC 61.195 60.000 0.00 0.00 45.82 5.92
278 279 2.842995 CGTAGCTCACGTCTAAGCG 58.157 57.895 0.00 0.00 45.82 4.68
287 288 2.027625 GTGGTGCACCGTAGCTCAC 61.028 63.158 30.07 17.15 39.43 3.51
288 289 2.342279 GTGGTGCACCGTAGCTCA 59.658 61.111 30.07 8.66 39.43 4.26
289 290 2.434359 GGTGGTGCACCGTAGCTC 60.434 66.667 30.07 15.10 44.95 4.09
304 305 0.683412 GTACCTTCAACACCGAGGGT 59.317 55.000 0.23 0.23 46.32 4.34
305 306 0.682852 TGTACCTTCAACACCGAGGG 59.317 55.000 0.00 0.00 38.12 4.30
306 307 1.069513 TGTGTACCTTCAACACCGAGG 59.930 52.381 4.09 0.00 45.33 4.63
307 308 2.223971 ACTGTGTACCTTCAACACCGAG 60.224 50.000 4.09 0.00 45.33 4.63
308 309 1.758280 ACTGTGTACCTTCAACACCGA 59.242 47.619 4.09 0.00 45.33 4.69
309 310 1.864711 CACTGTGTACCTTCAACACCG 59.135 52.381 0.00 0.69 45.33 4.94
310 311 3.188159 TCACTGTGTACCTTCAACACC 57.812 47.619 7.79 0.00 45.33 4.16
311 312 4.024893 CACATCACTGTGTACCTTCAACAC 60.025 45.833 7.79 0.00 46.33 3.32
312 313 4.126437 CACATCACTGTGTACCTTCAACA 58.874 43.478 7.79 0.00 46.33 3.33
313 314 4.732285 CACATCACTGTGTACCTTCAAC 57.268 45.455 7.79 0.00 46.33 3.18
324 325 0.937304 GCACACGAACACATCACTGT 59.063 50.000 0.00 0.00 35.44 3.55
325 326 0.111134 CGCACACGAACACATCACTG 60.111 55.000 0.00 0.00 43.93 3.66
326 327 2.225348 CGCACACGAACACATCACT 58.775 52.632 0.00 0.00 43.93 3.41
327 328 4.798152 CGCACACGAACACATCAC 57.202 55.556 0.00 0.00 43.93 3.06
337 338 1.305482 GACGATTTTGTTCGCACACG 58.695 50.000 0.00 0.00 42.82 4.49
338 339 2.376915 TGACGATTTTGTTCGCACAC 57.623 45.000 0.00 0.00 42.82 3.82
339 340 3.102276 GTTTGACGATTTTGTTCGCACA 58.898 40.909 0.00 0.00 42.82 4.57
340 341 2.466205 GGTTTGACGATTTTGTTCGCAC 59.534 45.455 0.00 0.00 42.82 5.34
341 342 2.722071 GGTTTGACGATTTTGTTCGCA 58.278 42.857 0.00 0.00 42.82 5.10
342 343 1.706597 CGGTTTGACGATTTTGTTCGC 59.293 47.619 0.00 0.00 42.82 4.70
343 344 2.286536 ACCGGTTTGACGATTTTGTTCG 60.287 45.455 0.00 0.00 44.56 3.95
344 345 3.343380 ACCGGTTTGACGATTTTGTTC 57.657 42.857 0.00 0.00 35.47 3.18
345 346 3.119424 ACAACCGGTTTGACGATTTTGTT 60.119 39.130 19.55 0.00 38.73 2.83
346 347 2.424246 ACAACCGGTTTGACGATTTTGT 59.576 40.909 19.55 6.22 38.73 2.83
347 348 3.040099 GACAACCGGTTTGACGATTTTG 58.960 45.455 19.55 5.47 38.73 2.44
348 349 2.683867 TGACAACCGGTTTGACGATTTT 59.316 40.909 19.55 0.00 38.73 1.82
349 350 2.290464 TGACAACCGGTTTGACGATTT 58.710 42.857 19.55 0.00 38.73 2.17
350 351 1.956297 TGACAACCGGTTTGACGATT 58.044 45.000 19.55 0.00 38.73 3.34
351 352 1.956297 TTGACAACCGGTTTGACGAT 58.044 45.000 19.55 0.00 38.73 3.73
352 353 1.397692 GTTTGACAACCGGTTTGACGA 59.602 47.619 19.55 10.61 38.73 4.20
353 354 1.817609 GTTTGACAACCGGTTTGACG 58.182 50.000 19.55 9.16 38.73 4.35
354 355 1.397692 TCGTTTGACAACCGGTTTGAC 59.602 47.619 19.55 13.75 38.73 3.18
355 356 1.735386 TCGTTTGACAACCGGTTTGA 58.265 45.000 19.55 0.65 38.73 2.69
356 357 2.546195 TTCGTTTGACAACCGGTTTG 57.454 45.000 19.55 15.61 41.49 2.93
357 358 2.488937 ACTTTCGTTTGACAACCGGTTT 59.511 40.909 19.55 9.52 0.00 3.27
358 359 2.086094 ACTTTCGTTTGACAACCGGTT 58.914 42.857 15.86 15.86 0.00 4.44
359 360 1.399089 CACTTTCGTTTGACAACCGGT 59.601 47.619 0.00 0.00 0.00 5.28
360 361 1.268335 CCACTTTCGTTTGACAACCGG 60.268 52.381 0.00 0.00 0.00 5.28
361 362 1.399089 ACCACTTTCGTTTGACAACCG 59.601 47.619 0.00 0.00 0.00 4.44
362 363 3.624410 ACTACCACTTTCGTTTGACAACC 59.376 43.478 0.00 0.00 0.00 3.77
363 364 4.870221 ACTACCACTTTCGTTTGACAAC 57.130 40.909 0.00 0.00 0.00 3.32
364 365 5.883503 AAACTACCACTTTCGTTTGACAA 57.116 34.783 0.00 0.00 0.00 3.18
365 366 5.883503 AAAACTACCACTTTCGTTTGACA 57.116 34.783 0.00 0.00 30.74 3.58
392 393 9.418045 GCTAACACTTTAATCTAATTTTTGGCA 57.582 29.630 0.00 0.00 0.00 4.92
393 394 9.639601 AGCTAACACTTTAATCTAATTTTTGGC 57.360 29.630 0.00 0.00 0.00 4.52
403 404 9.516314 GTCAACAAAAAGCTAACACTTTAATCT 57.484 29.630 0.00 0.00 38.92 2.40
404 405 8.469125 CGTCAACAAAAAGCTAACACTTTAATC 58.531 33.333 0.00 0.00 38.92 1.75
405 406 7.971722 ACGTCAACAAAAAGCTAACACTTTAAT 59.028 29.630 0.00 0.00 38.92 1.40
406 407 7.306953 ACGTCAACAAAAAGCTAACACTTTAA 58.693 30.769 0.00 0.00 38.92 1.52
407 408 6.844254 ACGTCAACAAAAAGCTAACACTTTA 58.156 32.000 0.00 0.00 38.92 1.85
408 409 5.705902 ACGTCAACAAAAAGCTAACACTTT 58.294 33.333 0.00 0.00 41.60 2.66
409 410 5.305139 ACGTCAACAAAAAGCTAACACTT 57.695 34.783 0.00 0.00 0.00 3.16
410 411 4.957759 ACGTCAACAAAAAGCTAACACT 57.042 36.364 0.00 0.00 0.00 3.55
411 412 5.275096 CGAAACGTCAACAAAAAGCTAACAC 60.275 40.000 0.00 0.00 0.00 3.32
412 413 4.789119 CGAAACGTCAACAAAAAGCTAACA 59.211 37.500 0.00 0.00 0.00 2.41
413 414 5.023286 TCGAAACGTCAACAAAAAGCTAAC 58.977 37.500 0.00 0.00 0.00 2.34
414 415 5.219226 TCGAAACGTCAACAAAAAGCTAA 57.781 34.783 0.00 0.00 0.00 3.09
415 416 4.861389 TCGAAACGTCAACAAAAAGCTA 57.139 36.364 0.00 0.00 0.00 3.32
416 417 3.750639 TCGAAACGTCAACAAAAAGCT 57.249 38.095 0.00 0.00 0.00 3.74
417 418 5.113529 CACTATCGAAACGTCAACAAAAAGC 59.886 40.000 0.00 0.00 0.00 3.51
418 419 5.619607 CCACTATCGAAACGTCAACAAAAAG 59.380 40.000 0.00 0.00 0.00 2.27
419 420 5.064962 ACCACTATCGAAACGTCAACAAAAA 59.935 36.000 0.00 0.00 0.00 1.94
420 421 4.571580 ACCACTATCGAAACGTCAACAAAA 59.428 37.500 0.00 0.00 0.00 2.44
421 422 4.121317 ACCACTATCGAAACGTCAACAAA 58.879 39.130 0.00 0.00 0.00 2.83
422 423 3.719924 ACCACTATCGAAACGTCAACAA 58.280 40.909 0.00 0.00 0.00 2.83
423 424 3.374220 ACCACTATCGAAACGTCAACA 57.626 42.857 0.00 0.00 0.00 3.33
424 425 4.479619 ACTACCACTATCGAAACGTCAAC 58.520 43.478 0.00 0.00 0.00 3.18
425 426 4.771590 ACTACCACTATCGAAACGTCAA 57.228 40.909 0.00 0.00 0.00 3.18
426 427 4.216042 TGAACTACCACTATCGAAACGTCA 59.784 41.667 0.00 0.00 0.00 4.35
427 428 4.726416 TGAACTACCACTATCGAAACGTC 58.274 43.478 0.00 0.00 0.00 4.34
428 429 4.217118 ACTGAACTACCACTATCGAAACGT 59.783 41.667 0.00 0.00 0.00 3.99
429 430 4.557690 CACTGAACTACCACTATCGAAACG 59.442 45.833 0.00 0.00 0.00 3.60
430 431 5.345202 CACACTGAACTACCACTATCGAAAC 59.655 44.000 0.00 0.00 0.00 2.78
431 432 5.242171 TCACACTGAACTACCACTATCGAAA 59.758 40.000 0.00 0.00 0.00 3.46
432 433 4.763279 TCACACTGAACTACCACTATCGAA 59.237 41.667 0.00 0.00 0.00 3.71
433 434 4.155462 GTCACACTGAACTACCACTATCGA 59.845 45.833 0.00 0.00 0.00 3.59
434 435 4.082949 TGTCACACTGAACTACCACTATCG 60.083 45.833 0.00 0.00 0.00 2.92
435 436 5.386958 TGTCACACTGAACTACCACTATC 57.613 43.478 0.00 0.00 0.00 2.08
436 437 7.476540 TTATGTCACACTGAACTACCACTAT 57.523 36.000 0.00 0.00 0.00 2.12
437 438 6.904463 TTATGTCACACTGAACTACCACTA 57.096 37.500 0.00 0.00 0.00 2.74
438 439 5.801531 TTATGTCACACTGAACTACCACT 57.198 39.130 0.00 0.00 0.00 4.00
439 440 5.178809 GGTTTATGTCACACTGAACTACCAC 59.821 44.000 0.00 0.00 0.00 4.16
440 441 5.302360 GGTTTATGTCACACTGAACTACCA 58.698 41.667 0.00 0.00 0.00 3.25
441 442 4.387862 CGGTTTATGTCACACTGAACTACC 59.612 45.833 0.00 0.00 0.00 3.18
442 443 4.986659 ACGGTTTATGTCACACTGAACTAC 59.013 41.667 0.00 0.00 0.00 2.73
443 444 4.986034 CACGGTTTATGTCACACTGAACTA 59.014 41.667 0.00 0.00 0.00 2.24
444 445 3.807622 CACGGTTTATGTCACACTGAACT 59.192 43.478 0.00 0.00 0.00 3.01
445 446 3.805422 TCACGGTTTATGTCACACTGAAC 59.195 43.478 0.00 0.00 0.00 3.18
446 447 4.061357 TCACGGTTTATGTCACACTGAA 57.939 40.909 0.00 0.00 0.00 3.02
447 448 3.737032 TCACGGTTTATGTCACACTGA 57.263 42.857 0.00 0.00 0.00 3.41
448 449 4.213270 ACATTCACGGTTTATGTCACACTG 59.787 41.667 0.00 0.00 0.00 3.66
449 450 4.385825 ACATTCACGGTTTATGTCACACT 58.614 39.130 0.00 0.00 0.00 3.55
450 451 4.742438 ACATTCACGGTTTATGTCACAC 57.258 40.909 0.00 0.00 0.00 3.82
451 452 7.441890 AATAACATTCACGGTTTATGTCACA 57.558 32.000 5.61 0.00 31.63 3.58
452 453 8.736751 AAAATAACATTCACGGTTTATGTCAC 57.263 30.769 5.61 0.00 31.63 3.67
505 506 4.453480 AATTGTTTGAGTCCCAAGAGGA 57.547 40.909 0.00 0.00 44.91 3.71
594 596 5.292101 GCAGTAGCTCAGATATTTTCGTGTT 59.708 40.000 0.00 0.00 37.91 3.32
596 598 5.321983 GCAGTAGCTCAGATATTTTCGTG 57.678 43.478 0.00 0.00 37.91 4.35
614 616 3.502191 TTCTTTGCGAACAAAAGCAGT 57.498 38.095 0.00 0.00 44.90 4.40
615 617 3.611986 TGTTTCTTTGCGAACAAAAGCAG 59.388 39.130 0.00 0.00 44.90 4.24
616 618 3.579709 TGTTTCTTTGCGAACAAAAGCA 58.420 36.364 0.00 0.00 44.90 3.91
617 619 3.857093 TCTGTTTCTTTGCGAACAAAAGC 59.143 39.130 0.00 0.00 44.90 3.51
620 622 3.119673 TGCTCTGTTTCTTTGCGAACAAA 60.120 39.130 0.00 0.00 43.45 2.83
631 633 5.799827 ACTAGACTCTTTGCTCTGTTTCT 57.200 39.130 0.00 0.00 0.00 2.52
632 634 6.480320 TGAAACTAGACTCTTTGCTCTGTTTC 59.520 38.462 0.00 0.00 36.44 2.78
643 645 5.046950 GGACAGGTCATGAAACTAGACTCTT 60.047 44.000 0.00 0.00 32.98 2.85
647 649 4.537135 TGGACAGGTCATGAAACTAGAC 57.463 45.455 0.00 0.00 0.00 2.59
651 653 5.363580 ACAAAATTGGACAGGTCATGAAACT 59.636 36.000 0.00 0.00 0.00 2.66
763 767 1.506718 GACGCTGATCGGTGTCAGA 59.493 57.895 33.42 0.00 46.77 3.27
1019 1024 0.106149 AGTCGGAGAAAAACGGCTGT 59.894 50.000 0.00 0.00 44.17 4.40
1036 1041 2.685380 CGGGGAGCTTGGGAGAGT 60.685 66.667 0.00 0.00 0.00 3.24
1075 1084 1.898574 CTGCTTTCCCCTGTGCGTT 60.899 57.895 0.00 0.00 0.00 4.84
1975 2145 1.348036 AGCTTGTCCAGGTAGTTGTCC 59.652 52.381 0.00 0.00 0.00 4.02
2065 2235 3.064987 CTCGCCGTCGAACATCCCT 62.065 63.158 0.00 0.00 44.98 4.20
2170 2340 1.758514 GTCCTCCGAGCTCCATCCA 60.759 63.158 8.47 0.00 0.00 3.41
2336 2509 9.181805 GGGAAAAGAAAAGAGAAAAGATTAACG 57.818 33.333 0.00 0.00 0.00 3.18
2347 2520 4.505039 CCTTCGAGGGGAAAAGAAAAGAGA 60.505 45.833 5.48 0.00 33.34 3.10
2348 2521 3.753797 CCTTCGAGGGGAAAAGAAAAGAG 59.246 47.826 5.48 0.00 33.34 2.85
2351 2524 3.751518 CTCCTTCGAGGGGAAAAGAAAA 58.248 45.455 14.38 0.00 38.47 2.29
2433 2612 0.398696 ACACGAAGTAACATGGCCCA 59.601 50.000 0.00 0.00 41.61 5.36
2434 2613 0.802494 CACACGAAGTAACATGGCCC 59.198 55.000 0.00 0.00 41.61 5.80
2532 2712 1.593196 TCCCTTGAAGAACAGCGTTG 58.407 50.000 0.00 0.00 0.00 4.10
2579 2764 4.342092 GGAAAAAGATACCCACCATCCATG 59.658 45.833 0.00 0.00 0.00 3.66
2580 2765 4.232820 AGGAAAAAGATACCCACCATCCAT 59.767 41.667 0.00 0.00 0.00 3.41
2581 2766 3.596046 AGGAAAAAGATACCCACCATCCA 59.404 43.478 0.00 0.00 0.00 3.41
2588 2773 3.153919 GCACACAGGAAAAAGATACCCA 58.846 45.455 0.00 0.00 0.00 4.51
2589 2774 3.153919 TGCACACAGGAAAAAGATACCC 58.846 45.455 0.00 0.00 0.00 3.69
2640 2829 3.512516 GATTCCGCACAGCCAGGC 61.513 66.667 1.84 1.84 0.00 4.85
2641 2830 1.817099 GAGATTCCGCACAGCCAGG 60.817 63.158 0.00 0.00 0.00 4.45
2642 2831 0.463295 ATGAGATTCCGCACAGCCAG 60.463 55.000 0.00 0.00 0.00 4.85
2643 2832 0.035152 AATGAGATTCCGCACAGCCA 60.035 50.000 0.00 0.00 0.00 4.75
2644 2833 0.659957 GAATGAGATTCCGCACAGCC 59.340 55.000 0.00 0.00 33.17 4.85
2659 2848 3.425625 CCGTCGTGGTTGGTAAATGAATG 60.426 47.826 0.00 0.00 0.00 2.67
2726 2918 9.799106 CTGGTTAATCTCCTTGTGGATATATTT 57.201 33.333 0.00 0.00 42.29 1.40
2728 2920 8.742125 TCTGGTTAATCTCCTTGTGGATATAT 57.258 34.615 0.00 0.00 42.29 0.86
2770 2965 2.091665 GGTTGGATCTTGGATGGATGGT 60.092 50.000 0.00 0.00 0.00 3.55
2802 3003 5.583495 TGTAAAGCATGTAAGTTTTTGCGT 58.417 33.333 0.00 0.00 40.00 5.24
2888 3113 1.515519 ATGCCACGCACGTACGTAG 60.516 57.895 22.34 19.66 46.34 3.51
2956 3187 3.819368 TCAGATGTTCTTGCTTGGTTCA 58.181 40.909 0.00 0.00 0.00 3.18
2957 3188 4.540824 GTTCAGATGTTCTTGCTTGGTTC 58.459 43.478 0.00 0.00 0.00 3.62
3015 3246 3.058160 CAGGGCGGTTGCTTCCTG 61.058 66.667 0.00 0.00 41.92 3.86
3025 3259 0.961753 AGAAAAGAAAAGCAGGGCGG 59.038 50.000 0.00 0.00 0.00 6.13
3070 3309 1.757949 GGCTGCTCCCTAATCCTCC 59.242 63.158 0.00 0.00 0.00 4.30
3105 3344 4.324991 GGAAAGGGACGGGCGTGT 62.325 66.667 0.00 0.00 0.00 4.49
3138 3377 3.737172 CTTTTGGGGCGAGCACGG 61.737 66.667 5.52 0.00 40.15 4.94
3185 3430 3.216292 GTGCAACTTGCCCACCGT 61.216 61.111 11.29 0.00 44.23 4.83
3266 3511 1.154016 CGAGGTACCTGCACGAGTG 60.154 63.158 22.10 0.00 0.00 3.51
3267 3512 1.602888 ACGAGGTACCTGCACGAGT 60.603 57.895 22.10 6.54 0.00 4.18
3268 3513 1.154016 CACGAGGTACCTGCACGAG 60.154 63.158 22.10 11.78 0.00 4.18
3269 3514 1.583495 CTCACGAGGTACCTGCACGA 61.583 60.000 22.10 9.32 0.00 4.35
3282 3527 3.691342 CCTCAACGGCCCTCACGA 61.691 66.667 0.00 0.00 34.93 4.35
3353 3601 0.239347 CTCACAAGCAAAAGCGAGGG 59.761 55.000 0.00 0.00 0.00 4.30
3380 3628 2.132996 CCAGCAACAAACCTGCCCA 61.133 57.895 0.00 0.00 40.86 5.36
3381 3629 2.087462 GACCAGCAACAAACCTGCCC 62.087 60.000 0.00 0.00 40.86 5.36
3382 3630 1.363807 GACCAGCAACAAACCTGCC 59.636 57.895 0.00 0.00 40.86 4.85
3383 3631 0.249031 GTGACCAGCAACAAACCTGC 60.249 55.000 0.00 0.00 40.24 4.85
3387 3635 2.423538 ACTCAAGTGACCAGCAACAAAC 59.576 45.455 0.00 0.00 0.00 2.93
3423 3671 1.087771 ATTAAAAGAGGACGCGGGCG 61.088 55.000 12.47 12.04 46.03 6.13
3424 3672 0.377203 CATTAAAAGAGGACGCGGGC 59.623 55.000 12.47 0.92 0.00 6.13
3425 3673 0.377203 GCATTAAAAGAGGACGCGGG 59.623 55.000 12.47 0.00 0.00 6.13
3426 3674 0.026285 CGCATTAAAAGAGGACGCGG 59.974 55.000 12.47 0.00 37.72 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.