Multiple sequence alignment - TraesCS5D01G244500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G244500 chr5D 100.000 5249 0 0 1 5249 352928562 352933810 0.000000e+00 9694.0
1 TraesCS5D01G244500 chr5D 92.121 165 8 1 4882 5041 250435116 250434952 1.470000e-55 228.0
2 TraesCS5D01G244500 chr5D 92.121 165 7 1 4883 5041 451543517 451543681 1.470000e-55 228.0
3 TraesCS5D01G244500 chr5D 90.099 101 9 1 2477 2576 282007018 282007118 4.270000e-26 130.0
4 TraesCS5D01G244500 chr5D 91.566 83 4 3 349 429 515260808 515260727 1.550000e-20 111.0
5 TraesCS5D01G244500 chr5D 90.476 63 4 1 3854 3916 398490699 398490639 1.210000e-11 82.4
6 TraesCS5D01G244500 chr5B 97.555 2658 46 3 451 3098 415992217 415994865 0.000000e+00 4530.0
7 TraesCS5D01G244500 chr5B 96.494 1141 21 5 3402 4536 415994861 415995988 0.000000e+00 1868.0
8 TraesCS5D01G244500 chr5B 93.730 319 17 3 4566 4884 415995983 415996298 4.760000e-130 475.0
9 TraesCS5D01G244500 chr5B 92.925 212 13 2 5039 5249 415996297 415996507 1.840000e-79 307.0
10 TraesCS5D01G244500 chr5B 84.314 153 13 3 1 151 415991925 415992068 7.090000e-29 139.0
11 TraesCS5D01G244500 chr5B 93.684 95 3 1 260 354 415992118 415992209 7.090000e-29 139.0
12 TraesCS5D01G244500 chr5A 94.817 1582 50 12 425 1974 452938144 452936563 0.000000e+00 2438.0
13 TraesCS5D01G244500 chr5A 92.318 1445 79 16 3402 4824 452935249 452933815 0.000000e+00 2025.0
14 TraesCS5D01G244500 chr5A 99.035 311 3 0 3093 3403 630124090 630123780 4.590000e-155 558.0
15 TraesCS5D01G244500 chr5A 96.308 325 12 0 3090 3414 79287153 79287477 7.740000e-148 534.0
16 TraesCS5D01G244500 chr5A 90.782 358 26 5 1 354 452938497 452938143 6.150000e-129 472.0
17 TraesCS5D01G244500 chr5A 86.685 368 27 11 2641 3006 452935732 452935385 6.370000e-104 388.0
18 TraesCS5D01G244500 chr5A 80.812 271 23 11 2223 2477 452936114 452935857 8.980000e-43 185.0
19 TraesCS5D01G244500 chr5A 94.667 75 4 0 5175 5249 452933795 452933721 3.320000e-22 117.0
20 TraesCS5D01G244500 chr5A 93.506 77 4 1 352 427 702465274 702465350 4.300000e-21 113.0
21 TraesCS5D01G244500 chr5A 91.358 81 6 1 350 429 702465352 702465272 5.560000e-20 110.0
22 TraesCS5D01G244500 chr5A 91.379 58 5 0 3002 3059 452935442 452935385 4.360000e-11 80.5
23 TraesCS5D01G244500 chr5A 100.000 35 0 0 2994 3028 452935375 452935341 1.220000e-06 65.8
24 TraesCS5D01G244500 chr4D 98.107 317 5 1 3090 3405 43651393 43651709 7.680000e-153 551.0
25 TraesCS5D01G244500 chr4D 90.526 95 8 1 2477 2570 11465267 11465361 1.980000e-24 124.0
26 TraesCS5D01G244500 chr4D 85.714 105 14 1 2474 2577 79216923 79217027 5.560000e-20 110.0
27 TraesCS5D01G244500 chr4D 86.275 102 11 3 2477 2576 259497265 259497365 2.000000e-19 108.0
28 TraesCS5D01G244500 chr4D 87.671 73 4 3 353 421 136958784 136958855 4.360000e-11 80.5
29 TraesCS5D01G244500 chr4D 83.696 92 3 5 349 428 11557344 11557435 5.640000e-10 76.8
30 TraesCS5D01G244500 chr4D 97.674 43 0 1 344 386 275755127 275755086 7.290000e-09 73.1
31 TraesCS5D01G244500 chr4D 97.619 42 1 0 385 426 476309413 476309372 7.290000e-09 73.1
32 TraesCS5D01G244500 chr4D 92.157 51 2 2 352 401 484424412 484424461 2.620000e-08 71.3
33 TraesCS5D01G244500 chr4D 92.157 51 3 1 382 431 488960922 488960872 2.620000e-08 71.3
34 TraesCS5D01G244500 chr4D 92.157 51 2 2 352 401 488960876 488960925 2.620000e-08 71.3
35 TraesCS5D01G244500 chr4D 93.478 46 3 0 385 430 507728056 507728011 9.430000e-08 69.4
36 TraesCS5D01G244500 chr4D 90.385 52 3 2 385 435 9296508 9296458 3.390000e-07 67.6
37 TraesCS5D01G244500 chr7D 98.697 307 4 0 3097 3403 510609979 510610285 3.570000e-151 545.0
38 TraesCS5D01G244500 chr7D 92.771 166 6 1 4882 5041 126233642 126233477 8.790000e-58 235.0
39 TraesCS5D01G244500 chr7D 91.463 164 8 3 4883 5040 264976371 264976534 2.460000e-53 220.0
40 TraesCS5D01G244500 chr7D 88.182 110 11 2 2477 2585 514658812 514658920 4.270000e-26 130.0
41 TraesCS5D01G244500 chr7D 90.099 101 9 1 2477 2576 600224522 600224622 4.270000e-26 130.0
42 TraesCS5D01G244500 chr7D 87.273 110 10 4 2477 2582 550233547 550233656 7.140000e-24 122.0
43 TraesCS5D01G244500 chr4A 97.500 320 7 1 3094 3412 546123844 546123525 3.570000e-151 545.0
44 TraesCS5D01G244500 chr4A 97.188 320 8 1 3094 3412 93621991 93621672 1.660000e-149 540.0
45 TraesCS5D01G244500 chr1A 97.205 322 6 3 3094 3413 243434392 243434072 4.620000e-150 542.0
46 TraesCS5D01G244500 chr1A 90.099 101 9 1 2477 2576 334203707 334203607 4.270000e-26 130.0
47 TraesCS5D01G244500 chr1A 90.000 90 8 1 2488 2576 352174110 352174199 1.190000e-21 115.0
48 TraesCS5D01G244500 chr1A 93.421 76 4 1 352 426 530602290 530602365 1.550000e-20 111.0
49 TraesCS5D01G244500 chr1A 92.308 78 3 2 352 426 489569106 489569183 2.000000e-19 108.0
50 TraesCS5D01G244500 chr1A 92.308 78 3 2 353 427 489569183 489569106 2.000000e-19 108.0
51 TraesCS5D01G244500 chr1A 92.208 77 5 1 353 428 530602365 530602289 2.000000e-19 108.0
52 TraesCS5D01G244500 chr1A 88.158 76 8 1 353 427 492058222 492058297 7.240000e-14 89.8
53 TraesCS5D01G244500 chr6A 97.170 318 8 1 3097 3414 86115619 86115303 2.150000e-148 536.0
54 TraesCS5D01G244500 chr6A 90.099 101 9 1 2477 2576 222554999 222554899 4.270000e-26 130.0
55 TraesCS5D01G244500 chr6A 94.231 52 1 2 351 401 596669119 596669169 1.570000e-10 78.7
56 TraesCS5D01G244500 chr6A 85.185 81 5 5 353 426 47670340 47670260 5.640000e-10 76.8
57 TraesCS5D01G244500 chr6A 92.453 53 2 2 386 438 121660077 121660127 2.030000e-09 75.0
58 TraesCS5D01G244500 chr3A 95.770 331 12 2 3087 3415 363316295 363315965 2.780000e-147 532.0
59 TraesCS5D01G244500 chr3A 91.411 163 11 1 4882 5041 243212167 243212329 2.460000e-53 220.0
60 TraesCS5D01G244500 chr3A 90.476 63 5 1 3855 3916 581848877 581848939 1.210000e-11 82.4
61 TraesCS5D01G244500 chr3B 82.262 451 35 21 4401 4841 274669695 274669280 1.080000e-91 348.0
62 TraesCS5D01G244500 chr3B 81.223 458 39 24 4396 4841 21928462 21928884 5.070000e-85 326.0
63 TraesCS5D01G244500 chr3B 89.655 87 7 1 352 436 13104226 13104140 5.560000e-20 110.0
64 TraesCS5D01G244500 chr3B 91.935 62 4 1 3859 3920 94493052 94493112 9.370000e-13 86.1
65 TraesCS5D01G244500 chr3B 89.062 64 7 0 3854 3917 351291192 351291129 4.360000e-11 80.5
66 TraesCS5D01G244500 chr2D 94.410 161 8 1 4882 5041 177208039 177208199 4.060000e-61 246.0
67 TraesCS5D01G244500 chr2D 88.073 109 12 1 2474 2581 106326810 106326918 1.530000e-25 128.0
68 TraesCS5D01G244500 chr2D 89.216 102 9 2 2477 2577 340262081 340262181 5.520000e-25 126.0
69 TraesCS5D01G244500 chr2D 88.298 94 3 2 353 438 76750387 76750480 7.190000e-19 106.0
70 TraesCS5D01G244500 chr2B 92.638 163 9 1 4882 5041 354139998 354139836 1.140000e-56 231.0
71 TraesCS5D01G244500 chr2B 88.073 109 12 1 2474 2581 154991084 154991192 1.530000e-25 128.0
72 TraesCS5D01G244500 chr2A 91.975 162 11 1 4882 5041 213418965 213419126 5.290000e-55 226.0
73 TraesCS5D01G244500 chr2A 93.220 59 4 0 3858 3916 695141770 695141828 2.600000e-13 87.9
74 TraesCS5D01G244500 chr1B 91.875 160 10 3 4882 5041 596163194 596163038 2.460000e-53 220.0
75 TraesCS5D01G244500 chr1D 93.069 101 6 1 2477 2576 100459085 100458985 4.240000e-31 147.0
76 TraesCS5D01G244500 chr1D 88.764 89 9 1 2477 2564 479523141 479523229 2.000000e-19 108.0
77 TraesCS5D01G244500 chr1D 87.912 91 10 1 353 442 470796197 470796107 7.190000e-19 106.0
78 TraesCS5D01G244500 chr1D 86.517 89 2 3 352 431 101277190 101277277 7.240000e-14 89.8
79 TraesCS5D01G244500 chr1D 87.500 80 4 1 353 426 92968203 92968124 2.600000e-13 87.9
80 TraesCS5D01G244500 chr1D 87.179 78 7 1 353 430 307417045 307416971 9.370000e-13 86.1
81 TraesCS5D01G244500 chr1D 91.379 58 4 1 351 407 71281493 71281550 1.570000e-10 78.7
82 TraesCS5D01G244500 chr1D 100.000 42 0 0 385 426 365894467 365894426 1.570000e-10 78.7
83 TraesCS5D01G244500 chr1D 87.302 63 4 3 385 444 433922716 433922655 9.430000e-08 69.4
84 TraesCS5D01G244500 chr7B 91.089 101 8 1 2477 2576 716493531 716493431 9.170000e-28 135.0
85 TraesCS5D01G244500 chr7B 94.737 76 4 0 353 428 156633921 156633846 9.230000e-23 119.0
86 TraesCS5D01G244500 chr6B 88.288 111 8 5 2477 2585 507471555 507471662 1.530000e-25 128.0
87 TraesCS5D01G244500 chr6B 92.500 80 4 2 353 432 696484356 696484279 4.300000e-21 113.0
88 TraesCS5D01G244500 chr6B 93.421 76 4 1 352 426 55682338 55682263 1.550000e-20 111.0
89 TraesCS5D01G244500 chrUn 88.462 104 11 1 2477 2579 3061978 3061875 1.980000e-24 124.0
90 TraesCS5D01G244500 chrUn 87.500 96 11 1 2485 2579 3062185 3062090 5.560000e-20 110.0
91 TraesCS5D01G244500 chrUn 88.636 88 9 1 2477 2563 15465961 15466048 7.190000e-19 106.0
92 TraesCS5D01G244500 chrUn 85.294 102 14 1 2477 2577 100172266 100172165 2.590000e-18 104.0
93 TraesCS5D01G244500 chrUn 86.022 93 9 4 2486 2576 403597377 403597287 4.330000e-16 97.1
94 TraesCS5D01G244500 chrUn 88.608 79 8 1 2486 2563 327067878 327067956 1.560000e-15 95.3
95 TraesCS5D01G244500 chrUn 86.905 84 5 3 353 430 27556382 27556465 7.240000e-14 89.8
96 TraesCS5D01G244500 chrUn 88.158 76 8 1 2487 2561 245963175 245963250 7.240000e-14 89.8
97 TraesCS5D01G244500 chrUn 87.179 78 9 1 2485 2561 316654755 316654678 2.600000e-13 87.9
98 TraesCS5D01G244500 chrUn 94.000 50 3 0 382 431 30435000 30434951 5.640000e-10 76.8
99 TraesCS5D01G244500 chrUn 83.908 87 2 1 353 427 12907673 12907587 7.290000e-09 73.1
100 TraesCS5D01G244500 chrUn 95.556 45 2 0 382 426 55795749 55795793 7.290000e-09 73.1
101 TraesCS5D01G244500 chrUn 97.619 42 1 0 385 426 62656160 62656201 7.290000e-09 73.1
102 TraesCS5D01G244500 chrUn 93.617 47 3 0 385 431 1181967 1181921 2.620000e-08 71.3
103 TraesCS5D01G244500 chrUn 93.617 47 3 0 382 428 319987259 319987305 2.620000e-08 71.3
104 TraesCS5D01G244500 chrUn 92.000 50 2 2 353 401 30140734 30140686 9.430000e-08 69.4
105 TraesCS5D01G244500 chrUn 93.617 47 2 1 382 427 194667127 194667173 9.430000e-08 69.4
106 TraesCS5D01G244500 chrUn 93.617 47 2 1 352 397 194667173 194667127 9.430000e-08 69.4
107 TraesCS5D01G244500 chrUn 100.000 37 0 0 353 389 337364392 337364428 9.430000e-08 69.4
108 TraesCS5D01G244500 chrUn 95.349 43 1 1 352 393 6054483 6054441 3.390000e-07 67.6
109 TraesCS5D01G244500 chrUn 82.418 91 3 7 353 430 45523586 45523496 3.390000e-07 67.6
110 TraesCS5D01G244500 chrUn 93.333 45 3 0 382 426 65676714 65676758 3.390000e-07 67.6
111 TraesCS5D01G244500 chrUn 90.196 51 3 2 352 401 28294170 28294121 1.220000e-06 65.8
112 TraesCS5D01G244500 chrUn 90.196 51 3 2 346 394 86556043 86555993 1.220000e-06 65.8
113 TraesCS5D01G244500 chrUn 88.679 53 4 2 350 401 81901912 81901861 4.390000e-06 63.9
114 TraesCS5D01G244500 chr3D 89.109 101 10 1 2477 2576 463716871 463716971 1.980000e-24 124.0
115 TraesCS5D01G244500 chr3D 91.026 78 6 1 351 428 477245564 477245640 2.590000e-18 104.0
116 TraesCS5D01G244500 chr4B 87.736 106 12 1 2474 2578 110708142 110708247 7.140000e-24 122.0
117 TraesCS5D01G244500 chr4B 87.619 105 12 1 2473 2576 613008766 613008870 2.570000e-23 121.0
118 TraesCS5D01G244500 chr4B 86.607 112 9 6 2477 2584 479155514 479155623 9.230000e-23 119.0
119 TraesCS5D01G244500 chr4B 92.105 76 5 1 353 427 47495817 47495742 7.190000e-19 106.0
120 TraesCS5D01G244500 chr4B 92.857 70 4 1 352 420 47495742 47495811 3.340000e-17 100.0
121 TraesCS5D01G244500 chr4B 92.647 68 5 0 359 426 13415753 13415686 1.200000e-16 99.0
122 TraesCS5D01G244500 chr4B 89.744 78 3 3 353 426 510351821 510351745 1.560000e-15 95.3
123 TraesCS5D01G244500 chr6D 87.379 103 7 6 2486 2585 317078877 317078778 4.300000e-21 113.0
124 TraesCS5D01G244500 chr6D 88.421 95 8 3 2484 2576 57825672 57825579 1.550000e-20 111.0
125 TraesCS5D01G244500 chr6D 93.333 60 4 0 3858 3917 33901460 33901519 7.240000e-14 89.8
126 TraesCS5D01G244500 chr6D 94.000 50 1 2 353 401 2103641 2103689 2.030000e-09 75.0
127 TraesCS5D01G244500 chr6D 97.619 42 1 0 385 426 126426888 126426847 7.290000e-09 73.1
128 TraesCS5D01G244500 chr6D 93.750 48 3 0 382 429 344059354 344059401 7.290000e-09 73.1
129 TraesCS5D01G244500 chr6D 93.617 47 3 0 351 397 25766569 25766523 2.620000e-08 71.3
130 TraesCS5D01G244500 chr6D 89.655 58 3 3 345 401 67915792 67915737 2.620000e-08 71.3
131 TraesCS5D01G244500 chr7A 92.063 63 4 1 3855 3916 281374332 281374270 2.600000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G244500 chr5D 352928562 352933810 5248 False 9694.0000 9694 100.0000 1 5249 1 chr5D.!!$F2 5248
1 TraesCS5D01G244500 chr5B 415991925 415996507 4582 False 1243.0000 4530 93.1170 1 5249 6 chr5B.!!$F1 5248
2 TraesCS5D01G244500 chr5A 452933721 452938497 4776 True 721.4125 2438 91.4325 1 5249 8 chr5A.!!$R3 5248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.322366 TTCTGCGGCATCAACCATGA 60.322 50.000 1.75 0.0 40.57 3.07 F
70 71 0.391597 TGGGTCTCCACGAGTGTTTC 59.608 55.000 2.36 0.0 38.32 2.78 F
71 72 0.680061 GGGTCTCCACGAGTGTTTCT 59.320 55.000 2.36 0.0 0.00 2.52 F
1005 1041 0.948623 TCCGTGTCCGTTTGATGCTG 60.949 55.000 0.00 0.0 0.00 4.41 F
2151 2288 6.524586 GCTAAATGTGCAACTTCAGTACATTC 59.475 38.462 9.43 0.0 46.67 2.67 F
3115 3479 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.0 46.91 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1005 1041 1.229529 TCCCCACCTGTCCTCCTTC 60.230 63.158 0.00 0.00 0.00 3.46 R
1200 1236 3.438216 TCCATGTTCATGGAGCTGAAA 57.562 42.857 25.03 6.71 45.19 2.69 R
1929 1971 5.241728 ACGCATAGATAGTGTAGAAGATGCA 59.758 40.000 0.00 0.00 38.65 3.96 R
2965 3281 1.198408 CCGCGACGTCTAATATAGCCA 59.802 52.381 14.70 0.00 0.00 4.75 R
4083 4451 0.034089 GCCTATTTCTGTGTGGGGCT 60.034 55.000 0.00 0.00 35.73 5.19 R
4931 5318 0.175760 ATTCACGCTCCGTATGCAGT 59.824 50.000 0.00 0.00 38.32 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.322366 TTCTGCGGCATCAACCATGA 60.322 50.000 1.75 0.00 40.57 3.07
39 40 0.745486 TGCGGCATCAACCATGAGAG 60.745 55.000 0.00 0.00 39.39 3.20
44 45 2.286872 GCATCAACCATGAGAGGAGTG 58.713 52.381 0.00 0.00 39.39 3.51
60 61 1.975680 GAGTGGTTACTTGGGTCTCCA 59.024 52.381 0.00 0.00 42.25 3.86
70 71 0.391597 TGGGTCTCCACGAGTGTTTC 59.608 55.000 2.36 0.00 38.32 2.78
71 72 0.680061 GGGTCTCCACGAGTGTTTCT 59.320 55.000 2.36 0.00 0.00 2.52
72 73 1.891150 GGGTCTCCACGAGTGTTTCTA 59.109 52.381 2.36 0.00 0.00 2.10
73 74 2.352519 GGGTCTCCACGAGTGTTTCTAC 60.353 54.545 2.36 0.00 0.00 2.59
74 75 2.295349 GGTCTCCACGAGTGTTTCTACA 59.705 50.000 2.36 0.00 0.00 2.74
75 76 3.056749 GGTCTCCACGAGTGTTTCTACAT 60.057 47.826 2.36 0.00 36.50 2.29
112 116 6.871492 TGTTGTCGCATGTAGAAAAGAGAATA 59.129 34.615 0.00 0.00 0.00 1.75
115 119 8.317891 TGTCGCATGTAGAAAAGAGAATAAAA 57.682 30.769 0.00 0.00 0.00 1.52
145 149 9.944663 GTACACAATAGATTTGACAAAAGTTGA 57.055 29.630 4.41 0.00 0.00 3.18
168 172 4.406003 AGCATTAAGTGGACTAGATCGGTT 59.594 41.667 0.00 0.00 0.00 4.44
206 210 4.636648 AGTGTTCACCGACAACAACATTTA 59.363 37.500 0.00 0.00 35.53 1.40
207 211 5.298276 AGTGTTCACCGACAACAACATTTAT 59.702 36.000 0.00 0.00 35.53 1.40
217 222 8.652463 CCGACAACAACATTTATTTTTATTCCC 58.348 33.333 0.00 0.00 0.00 3.97
251 256 8.698973 TTCCATTTACTGACTTGTAAAATGGA 57.301 30.769 18.93 18.93 43.02 3.41
253 258 8.792633 TCCATTTACTGACTTGTAAAATGGAAG 58.207 33.333 20.01 1.59 43.02 3.46
311 316 7.941919 ACTCCAAGGTTTTTCTTCTGAAATAC 58.058 34.615 0.00 0.00 41.24 1.89
312 317 7.780271 ACTCCAAGGTTTTTCTTCTGAAATACT 59.220 33.333 10.25 0.72 41.02 2.12
313 318 9.284968 CTCCAAGGTTTTTCTTCTGAAATACTA 57.715 33.333 10.25 0.00 41.02 1.82
361 366 4.762289 ACATTGATGTTCTACTCCCTCC 57.238 45.455 0.00 0.00 37.90 4.30
362 367 3.133003 ACATTGATGTTCTACTCCCTCCG 59.867 47.826 0.00 0.00 37.90 4.63
363 368 2.526888 TGATGTTCTACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
364 369 2.816411 TGATGTTCTACTCCCTCCGTT 58.184 47.619 0.00 0.00 0.00 4.44
365 370 3.170717 TGATGTTCTACTCCCTCCGTTT 58.829 45.455 0.00 0.00 0.00 3.60
366 371 3.194968 TGATGTTCTACTCCCTCCGTTTC 59.805 47.826 0.00 0.00 0.00 2.78
367 372 2.600790 TGTTCTACTCCCTCCGTTTCA 58.399 47.619 0.00 0.00 0.00 2.69
368 373 2.967201 TGTTCTACTCCCTCCGTTTCAA 59.033 45.455 0.00 0.00 0.00 2.69
369 374 3.388676 TGTTCTACTCCCTCCGTTTCAAA 59.611 43.478 0.00 0.00 0.00 2.69
370 375 4.141665 TGTTCTACTCCCTCCGTTTCAAAA 60.142 41.667 0.00 0.00 0.00 2.44
371 376 4.903045 TCTACTCCCTCCGTTTCAAAAT 57.097 40.909 0.00 0.00 0.00 1.82
372 377 6.168389 GTTCTACTCCCTCCGTTTCAAAATA 58.832 40.000 0.00 0.00 0.00 1.40
373 378 5.974108 TCTACTCCCTCCGTTTCAAAATAG 58.026 41.667 0.00 0.00 0.00 1.73
374 379 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
375 380 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
376 381 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
377 382 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
378 383 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
379 384 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
380 385 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
381 386 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
382 387 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
383 388 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
384 389 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
385 390 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
386 391 7.094549 CCGTTTCAAAATAGATGACCCAACTTA 60.095 37.037 0.00 0.00 0.00 2.24
387 392 7.962918 CGTTTCAAAATAGATGACCCAACTTAG 59.037 37.037 0.00 0.00 0.00 2.18
388 393 8.793592 GTTTCAAAATAGATGACCCAACTTAGT 58.206 33.333 0.00 0.00 0.00 2.24
417 422 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
418 423 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
419 424 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
420 425 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
421 426 6.049955 AGTCATCTATTTTGAAACGGAGGA 57.950 37.500 0.00 0.00 0.00 3.71
422 427 6.472887 AGTCATCTATTTTGAAACGGAGGAA 58.527 36.000 0.00 0.00 0.00 3.36
423 428 6.595716 AGTCATCTATTTTGAAACGGAGGAAG 59.404 38.462 0.00 0.00 0.00 3.46
424 429 6.371825 GTCATCTATTTTGAAACGGAGGAAGT 59.628 38.462 0.00 0.00 0.00 3.01
425 430 7.548075 GTCATCTATTTTGAAACGGAGGAAGTA 59.452 37.037 0.00 0.00 0.00 2.24
431 436 5.640189 TTGAAACGGAGGAAGTAGTAGAG 57.360 43.478 0.00 0.00 0.00 2.43
523 528 1.472662 CCACGGTGAAGGGAGACACT 61.473 60.000 10.28 0.00 37.22 3.55
674 679 2.438434 GATTGGCCCACAGGTCCG 60.438 66.667 0.00 0.00 36.69 4.79
900 931 1.261238 CCTCTCACCCACCACTCTCC 61.261 65.000 0.00 0.00 0.00 3.71
906 937 1.687493 CCCACCACTCTCCCTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
979 1010 1.394917 CGGTTTGAGGCGAATTCTCTG 59.605 52.381 3.52 0.00 32.78 3.35
1005 1041 0.948623 TCCGTGTCCGTTTGATGCTG 60.949 55.000 0.00 0.00 0.00 4.41
2151 2288 6.524586 GCTAAATGTGCAACTTCAGTACATTC 59.475 38.462 9.43 0.00 46.67 2.67
2525 2782 9.692749 TGAAATGGATGTATCTAGACGTATTTC 57.307 33.333 0.00 6.14 33.65 2.17
2792 3108 7.715249 AGATTAATAGCTCCTTTATTGCGAACA 59.285 33.333 0.00 0.00 0.00 3.18
2873 3189 7.487822 AAGAGAGGTAATTGATTGTCTCTCA 57.512 36.000 23.84 0.00 42.68 3.27
2967 3283 8.004087 CCATTTTCTTATGGATGGCTATATGG 57.996 38.462 0.00 0.00 46.63 2.74
2968 3284 7.417116 CCATTTTCTTATGGATGGCTATATGGC 60.417 40.741 1.74 1.74 46.63 4.40
3093 3457 4.069304 TGTTGAGTTACACCCTGCAATAC 58.931 43.478 0.00 0.00 0.00 1.89
3094 3458 4.202419 TGTTGAGTTACACCCTGCAATACT 60.202 41.667 0.00 0.00 0.00 2.12
3095 3459 5.012251 TGTTGAGTTACACCCTGCAATACTA 59.988 40.000 0.00 0.00 0.00 1.82
3096 3460 5.748670 TGAGTTACACCCTGCAATACTAA 57.251 39.130 0.00 0.00 0.00 2.24
3097 3461 5.730550 TGAGTTACACCCTGCAATACTAAG 58.269 41.667 0.00 0.00 0.00 2.18
3098 3462 5.099042 AGTTACACCCTGCAATACTAAGG 57.901 43.478 0.00 0.00 0.00 2.69
3099 3463 2.420058 ACACCCTGCAATACTAAGGC 57.580 50.000 0.00 0.00 0.00 4.35
3100 3464 1.064685 ACACCCTGCAATACTAAGGCC 60.065 52.381 0.00 0.00 0.00 5.19
3101 3465 1.212935 CACCCTGCAATACTAAGGCCT 59.787 52.381 0.00 0.00 0.00 5.19
3102 3466 1.490910 ACCCTGCAATACTAAGGCCTC 59.509 52.381 5.23 0.00 0.00 4.70
3103 3467 1.202818 CCCTGCAATACTAAGGCCTCC 60.203 57.143 5.23 0.00 0.00 4.30
3104 3468 1.771255 CCTGCAATACTAAGGCCTCCT 59.229 52.381 5.23 0.00 33.87 3.69
3105 3469 2.173569 CCTGCAATACTAAGGCCTCCTT 59.826 50.000 5.23 3.40 46.63 3.36
3106 3470 3.372025 CCTGCAATACTAAGGCCTCCTTT 60.372 47.826 5.23 0.00 41.69 3.11
3107 3471 3.620488 TGCAATACTAAGGCCTCCTTTG 58.380 45.455 5.23 7.58 41.69 2.77
3108 3472 2.952310 GCAATACTAAGGCCTCCTTTGG 59.048 50.000 5.23 0.00 41.69 3.28
3109 3473 3.624959 GCAATACTAAGGCCTCCTTTGGT 60.625 47.826 5.23 0.00 41.69 3.67
3110 3474 4.600062 CAATACTAAGGCCTCCTTTGGTT 58.400 43.478 5.23 0.00 41.69 3.67
3111 3475 4.948062 ATACTAAGGCCTCCTTTGGTTT 57.052 40.909 5.23 0.00 41.69 3.27
3112 3476 2.876581 ACTAAGGCCTCCTTTGGTTTG 58.123 47.619 5.23 0.00 41.69 2.93
3113 3477 2.171003 CTAAGGCCTCCTTTGGTTTGG 58.829 52.381 5.23 0.00 41.69 3.28
3114 3478 0.560688 AAGGCCTCCTTTGGTTTGGA 59.439 50.000 5.23 0.00 41.69 3.53
3115 3479 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
3121 3485 4.039603 CTCCTTTGGTTTGGAGGAATCT 57.960 45.455 0.00 0.00 44.44 2.40
3122 3486 4.013050 CTCCTTTGGTTTGGAGGAATCTC 58.987 47.826 0.00 0.00 44.44 2.75
3123 3487 3.397618 TCCTTTGGTTTGGAGGAATCTCA 59.602 43.478 0.00 0.00 41.69 3.27
3124 3488 4.044571 TCCTTTGGTTTGGAGGAATCTCAT 59.955 41.667 0.00 0.00 41.69 2.90
3125 3489 5.252863 TCCTTTGGTTTGGAGGAATCTCATA 59.747 40.000 0.00 0.00 41.69 2.15
3126 3490 5.591877 CCTTTGGTTTGGAGGAATCTCATAG 59.408 44.000 0.00 0.00 41.69 2.23
3127 3491 4.778213 TGGTTTGGAGGAATCTCATAGG 57.222 45.455 0.00 0.00 41.69 2.57
3128 3492 4.370776 TGGTTTGGAGGAATCTCATAGGA 58.629 43.478 0.00 0.00 41.69 2.94
3129 3493 4.788075 TGGTTTGGAGGAATCTCATAGGAA 59.212 41.667 0.00 0.00 41.69 3.36
3130 3494 5.433051 TGGTTTGGAGGAATCTCATAGGAAT 59.567 40.000 0.00 0.00 41.69 3.01
3131 3495 6.068853 TGGTTTGGAGGAATCTCATAGGAATT 60.069 38.462 0.00 0.00 41.69 2.17
3132 3496 6.488344 GGTTTGGAGGAATCTCATAGGAATTC 59.512 42.308 0.00 0.00 41.69 2.17
3133 3497 7.286313 GTTTGGAGGAATCTCATAGGAATTCT 58.714 38.462 5.23 0.00 41.69 2.40
3134 3498 8.432805 GTTTGGAGGAATCTCATAGGAATTCTA 58.567 37.037 5.23 0.00 41.69 2.10
3135 3499 7.789202 TGGAGGAATCTCATAGGAATTCTAG 57.211 40.000 5.23 0.00 41.69 2.43
3136 3500 7.539292 TGGAGGAATCTCATAGGAATTCTAGA 58.461 38.462 5.23 0.00 41.69 2.43
3137 3501 7.673504 TGGAGGAATCTCATAGGAATTCTAGAG 59.326 40.741 5.23 7.80 41.69 2.43
3138 3502 7.124147 GGAGGAATCTCATAGGAATTCTAGAGG 59.876 44.444 5.23 0.00 41.69 3.69
3139 3503 7.774713 AGGAATCTCATAGGAATTCTAGAGGA 58.225 38.462 5.23 0.00 30.80 3.71
3140 3504 8.409029 AGGAATCTCATAGGAATTCTAGAGGAT 58.591 37.037 5.23 0.86 30.80 3.24
3141 3505 9.707957 GGAATCTCATAGGAATTCTAGAGGATA 57.292 37.037 5.23 0.00 30.80 2.59
3143 3507 9.713684 AATCTCATAGGAATTCTAGAGGATAGG 57.286 37.037 5.23 0.00 30.80 2.57
3144 3508 8.469924 TCTCATAGGAATTCTAGAGGATAGGA 57.530 38.462 5.23 0.00 30.80 2.94
3145 3509 9.079239 TCTCATAGGAATTCTAGAGGATAGGAT 57.921 37.037 5.23 0.00 30.80 3.24
3146 3510 9.713684 CTCATAGGAATTCTAGAGGATAGGATT 57.286 37.037 5.23 0.00 0.00 3.01
3147 3511 9.707957 TCATAGGAATTCTAGAGGATAGGATTC 57.292 37.037 5.23 7.20 38.32 2.52
3148 3512 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
3179 3543 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
3180 3544 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
3181 3545 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
3182 3546 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
3183 3547 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
3184 3548 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
3185 3549 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
3186 3550 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
3187 3551 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
3188 3552 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
3189 3553 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
3190 3554 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
3191 3555 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
3192 3556 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
3193 3557 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
3194 3558 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
3195 3559 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
3229 3593 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
3230 3594 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
3231 3595 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
3232 3596 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
3233 3597 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
3234 3598 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
3235 3599 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
3236 3600 4.478317 TGGTTCCTATCCTCCACATTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
3237 3601 5.669904 TGGTTCCTATCCTCCACATTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
3238 3602 6.183361 TGGTTCCTATCCTCCACATTTCATAG 60.183 42.308 0.00 0.00 0.00 2.23
3239 3603 6.234177 GTTCCTATCCTCCACATTTCATAGG 58.766 44.000 0.00 0.00 35.93 2.57
3240 3604 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
3241 3605 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
3242 3606 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
3243 3607 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
3244 3608 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
3247 3611 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
3248 3612 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
3262 3626 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
3271 3635 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
3272 3636 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
3273 3637 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
3274 3638 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
3275 3639 6.375455 TGAGCCTAGACTCAATGGAAAAATTC 59.625 38.462 6.25 0.00 43.59 2.17
3276 3640 6.183360 GAGCCTAGACTCAATGGAAAAATTCC 60.183 42.308 0.51 2.12 42.14 3.01
3277 3641 8.285329 GAGCCTAGACTCAATGGAAAAATTCCT 61.285 40.741 10.28 0.00 42.21 3.36
3288 3652 5.984233 GGAAAAATTCCTTTGGTGTCAAC 57.016 39.130 1.86 0.00 46.57 3.18
3289 3653 4.814234 GGAAAAATTCCTTTGGTGTCAACC 59.186 41.667 1.86 0.00 46.57 3.77
3317 3681 7.921041 TGACATCTCATTTCCTATTCCTACT 57.079 36.000 0.00 0.00 0.00 2.57
3318 3682 7.957002 TGACATCTCATTTCCTATTCCTACTC 58.043 38.462 0.00 0.00 0.00 2.59
3319 3683 7.565029 TGACATCTCATTTCCTATTCCTACTCA 59.435 37.037 0.00 0.00 0.00 3.41
3320 3684 8.503428 ACATCTCATTTCCTATTCCTACTCAT 57.497 34.615 0.00 0.00 0.00 2.90
3321 3685 9.607333 ACATCTCATTTCCTATTCCTACTCATA 57.393 33.333 0.00 0.00 0.00 2.15
3339 3703 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
3340 3704 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
3341 3705 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
3342 3706 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
3343 3707 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
3344 3708 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
3353 3717 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
3354 3718 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
3355 3719 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
3356 3720 9.330063 GATACATGTCATCTCATTTCCTACAAA 57.670 33.333 0.00 0.00 0.00 2.83
3357 3721 9.685276 ATACATGTCATCTCATTTCCTACAAAA 57.315 29.630 0.00 0.00 0.00 2.44
3358 3722 8.585471 ACATGTCATCTCATTTCCTACAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
3359 3723 9.028284 ACATGTCATCTCATTTCCTACAAAATT 57.972 29.630 0.00 0.00 0.00 1.82
3360 3724 9.512435 CATGTCATCTCATTTCCTACAAAATTC 57.488 33.333 0.00 0.00 0.00 2.17
3361 3725 8.634335 TGTCATCTCATTTCCTACAAAATTCA 57.366 30.769 0.00 0.00 0.00 2.57
3362 3726 9.246670 TGTCATCTCATTTCCTACAAAATTCAT 57.753 29.630 0.00 0.00 0.00 2.57
3372 3736 9.893634 TTTCCTACAAAATTCATATTCCTACGA 57.106 29.630 0.00 0.00 0.00 3.43
3384 3748 9.937876 TTCATATTCCTACGATAATCCTATCCT 57.062 33.333 0.00 0.00 31.68 3.24
3389 3753 9.937876 ATTCCTACGATAATCCTATCCTATGAA 57.062 33.333 0.00 0.00 31.68 2.57
3390 3754 8.749026 TCCTACGATAATCCTATCCTATGAAC 57.251 38.462 0.00 0.00 31.68 3.18
3391 3755 7.778853 TCCTACGATAATCCTATCCTATGAACC 59.221 40.741 0.00 0.00 31.68 3.62
3392 3756 7.560262 CCTACGATAATCCTATCCTATGAACCA 59.440 40.741 0.00 0.00 31.68 3.67
3393 3757 7.792364 ACGATAATCCTATCCTATGAACCAA 57.208 36.000 0.00 0.00 31.68 3.67
3394 3758 8.202461 ACGATAATCCTATCCTATGAACCAAA 57.798 34.615 0.00 0.00 31.68 3.28
3395 3759 8.656806 ACGATAATCCTATCCTATGAACCAAAA 58.343 33.333 0.00 0.00 31.68 2.44
3396 3760 9.155975 CGATAATCCTATCCTATGAACCAAAAG 57.844 37.037 0.00 0.00 31.68 2.27
3399 3763 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
3400 3764 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
4078 4446 4.402056 TCTTTTCTCACAAGGAGTCGTT 57.598 40.909 0.00 0.00 44.40 3.85
4083 4451 6.829229 TTTCTCACAAGGAGTCGTTCTATA 57.171 37.500 0.00 0.00 44.40 1.31
4101 4469 3.864789 ATAGCCCCACACAGAAATAGG 57.135 47.619 0.00 0.00 0.00 2.57
4108 4476 4.956075 CCCCACACAGAAATAGGCTATTTT 59.044 41.667 28.06 17.29 38.42 1.82
4109 4477 5.163519 CCCCACACAGAAATAGGCTATTTTG 60.164 44.000 28.06 25.96 38.42 2.44
4113 4481 7.336931 CCACACAGAAATAGGCTATTTTGTAGT 59.663 37.037 28.06 24.43 38.42 2.73
4155 4523 5.449304 CAAAATCTTGTACTGACGGGAAAC 58.551 41.667 0.00 0.00 0.00 2.78
4160 4528 4.039973 TCTTGTACTGACGGGAAACTGATT 59.960 41.667 0.00 0.00 41.09 2.57
4218 4586 2.357517 CGGAAGAAGCGGCAGTGT 60.358 61.111 1.45 0.00 0.00 3.55
4463 4837 3.840666 TGGCAGTCCTTCAGAATCTAGTT 59.159 43.478 0.00 0.00 0.00 2.24
4504 4881 7.147976 GGTTTGCATAACATCAGTCTTTTTCT 58.852 34.615 11.93 0.00 0.00 2.52
4505 4882 7.653311 GGTTTGCATAACATCAGTCTTTTTCTT 59.347 33.333 11.93 0.00 0.00 2.52
4506 4883 8.694394 GTTTGCATAACATCAGTCTTTTTCTTC 58.306 33.333 0.00 0.00 0.00 2.87
4536 4913 4.495422 TCTTCTAACTTTGCGCCTTAGAG 58.505 43.478 4.18 0.00 30.16 2.43
4538 4915 3.846360 TCTAACTTTGCGCCTTAGAGAC 58.154 45.455 4.18 0.00 0.00 3.36
4539 4916 2.841442 AACTTTGCGCCTTAGAGACT 57.159 45.000 4.18 0.00 0.00 3.24
4540 4917 3.955650 AACTTTGCGCCTTAGAGACTA 57.044 42.857 4.18 0.00 0.00 2.59
4541 4918 3.512033 ACTTTGCGCCTTAGAGACTAG 57.488 47.619 4.18 0.00 0.00 2.57
4542 4919 2.826725 ACTTTGCGCCTTAGAGACTAGT 59.173 45.455 4.18 0.00 0.00 2.57
4543 4920 4.015084 ACTTTGCGCCTTAGAGACTAGTA 58.985 43.478 4.18 0.00 0.00 1.82
4571 4948 7.234355 AGATAAGTTGGGTTTGAGTTTCAGAT 58.766 34.615 0.00 0.00 0.00 2.90
4582 4959 6.706055 TTGAGTTTCAGATGTCGATGTAAC 57.294 37.500 0.00 0.00 0.00 2.50
4589 4966 6.132791 TCAGATGTCGATGTAACTAAGTCC 57.867 41.667 0.00 0.00 0.00 3.85
4734 5121 3.459232 TGCGTTGCTTATATCTGCTCT 57.541 42.857 2.30 0.00 0.00 4.09
4737 5124 4.271049 TGCGTTGCTTATATCTGCTCTTTC 59.729 41.667 2.30 0.00 0.00 2.62
4750 5137 2.493278 TGCTCTTTCTTAATTGCCTGGC 59.507 45.455 12.87 12.87 0.00 4.85
4845 5232 6.154021 GGATCCTTCATTGGCATTGCTTATAT 59.846 38.462 3.84 0.00 0.00 0.86
4868 5255 6.392625 TTTTGGACATTCACGGTATTTCAA 57.607 33.333 0.00 0.00 0.00 2.69
4882 5269 5.514914 CGGTATTTCAAAATGCGTTGCTTAT 59.485 36.000 0.00 0.00 32.63 1.73
4883 5270 6.689241 CGGTATTTCAAAATGCGTTGCTTATA 59.311 34.615 0.00 0.00 32.63 0.98
4884 5271 7.305190 CGGTATTTCAAAATGCGTTGCTTATAC 60.305 37.037 0.00 0.00 32.63 1.47
4885 5272 7.700656 GGTATTTCAAAATGCGTTGCTTATACT 59.299 33.333 0.00 0.00 32.63 2.12
4886 5273 7.740519 ATTTCAAAATGCGTTGCTTATACTC 57.259 32.000 0.00 0.00 0.00 2.59
4887 5274 5.229921 TCAAAATGCGTTGCTTATACTCC 57.770 39.130 0.00 0.00 0.00 3.85
4888 5275 4.095782 TCAAAATGCGTTGCTTATACTCCC 59.904 41.667 0.00 0.00 0.00 4.30
4889 5276 3.560636 AATGCGTTGCTTATACTCCCT 57.439 42.857 0.00 0.00 0.00 4.20
4890 5277 2.596904 TGCGTTGCTTATACTCCCTC 57.403 50.000 0.00 0.00 0.00 4.30
4891 5278 1.138266 TGCGTTGCTTATACTCCCTCC 59.862 52.381 0.00 0.00 0.00 4.30
4892 5279 1.868519 GCGTTGCTTATACTCCCTCCG 60.869 57.143 0.00 0.00 0.00 4.63
4893 5280 1.407979 CGTTGCTTATACTCCCTCCGT 59.592 52.381 0.00 0.00 0.00 4.69
4894 5281 2.159142 CGTTGCTTATACTCCCTCCGTT 60.159 50.000 0.00 0.00 0.00 4.44
4895 5282 3.677976 CGTTGCTTATACTCCCTCCGTTT 60.678 47.826 0.00 0.00 0.00 3.60
4896 5283 3.814005 TGCTTATACTCCCTCCGTTTC 57.186 47.619 0.00 0.00 0.00 2.78
4897 5284 3.371965 TGCTTATACTCCCTCCGTTTCT 58.628 45.455 0.00 0.00 0.00 2.52
4898 5285 4.539726 TGCTTATACTCCCTCCGTTTCTA 58.460 43.478 0.00 0.00 0.00 2.10
4899 5286 4.957954 TGCTTATACTCCCTCCGTTTCTAA 59.042 41.667 0.00 0.00 0.00 2.10
4900 5287 5.422970 TGCTTATACTCCCTCCGTTTCTAAA 59.577 40.000 0.00 0.00 0.00 1.85
4901 5288 6.099269 TGCTTATACTCCCTCCGTTTCTAAAT 59.901 38.462 0.00 0.00 0.00 1.40
4902 5289 7.288389 TGCTTATACTCCCTCCGTTTCTAAATA 59.712 37.037 0.00 0.00 0.00 1.40
4903 5290 8.312564 GCTTATACTCCCTCCGTTTCTAAATAT 58.687 37.037 0.00 0.00 0.00 1.28
4906 5293 8.904099 ATACTCCCTCCGTTTCTAAATATTTG 57.096 34.615 11.05 1.65 0.00 2.32
4907 5294 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
4908 5295 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
4909 5296 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
4910 5297 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
4911 5298 7.551617 TCCCTCCGTTTCTAAATATTTGTCTTC 59.448 37.037 11.05 0.00 0.00 2.87
4912 5299 7.553044 CCCTCCGTTTCTAAATATTTGTCTTCT 59.447 37.037 11.05 0.00 0.00 2.85
4913 5300 8.947115 CCTCCGTTTCTAAATATTTGTCTTCTT 58.053 33.333 11.05 0.00 0.00 2.52
4929 5316 8.964476 TTGTCTTCTTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4930 5317 8.370493 TGTCTTCTTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4931 5318 8.204160 TGTCTTCTTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4932 5319 8.491950 GTCTTCTTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4933 5320 8.424918 TCTTCTTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4934 5321 7.953158 TCTTAGAGATTTCAACAAGTGACTG 57.047 36.000 0.00 0.00 35.39 3.51
4935 5322 6.425114 TCTTAGAGATTTCAACAAGTGACTGC 59.575 38.462 0.00 0.00 35.39 4.40
4936 5323 4.454678 AGAGATTTCAACAAGTGACTGCA 58.545 39.130 0.00 0.00 35.39 4.41
4937 5324 5.068636 AGAGATTTCAACAAGTGACTGCAT 58.931 37.500 0.00 0.00 35.39 3.96
4938 5325 6.233434 AGAGATTTCAACAAGTGACTGCATA 58.767 36.000 0.00 0.00 35.39 3.14
4939 5326 6.148480 AGAGATTTCAACAAGTGACTGCATAC 59.852 38.462 0.00 0.00 35.39 2.39
4940 5327 4.466567 TTTCAACAAGTGACTGCATACG 57.533 40.909 0.00 0.00 35.39 3.06
4941 5328 2.412870 TCAACAAGTGACTGCATACGG 58.587 47.619 0.00 0.00 0.00 4.02
4942 5329 2.036604 TCAACAAGTGACTGCATACGGA 59.963 45.455 0.00 0.00 0.00 4.69
4943 5330 2.370281 ACAAGTGACTGCATACGGAG 57.630 50.000 0.00 0.00 36.48 4.63
4944 5331 1.002366 CAAGTGACTGCATACGGAGC 58.998 55.000 0.00 0.00 32.91 4.70
4945 5332 0.458543 AAGTGACTGCATACGGAGCG 60.459 55.000 0.00 0.00 32.91 5.03
4946 5333 1.153823 GTGACTGCATACGGAGCGT 60.154 57.895 0.00 0.00 44.35 5.07
4947 5334 1.153842 TGACTGCATACGGAGCGTG 60.154 57.895 0.00 0.00 41.39 5.34
4948 5335 1.138883 GACTGCATACGGAGCGTGA 59.861 57.895 0.00 0.00 41.39 4.35
4949 5336 0.457853 GACTGCATACGGAGCGTGAA 60.458 55.000 0.00 0.00 41.39 3.18
4950 5337 0.175760 ACTGCATACGGAGCGTGAAT 59.824 50.000 0.00 0.00 41.39 2.57
4951 5338 0.855349 CTGCATACGGAGCGTGAATC 59.145 55.000 0.00 0.00 41.39 2.52
4952 5339 0.459899 TGCATACGGAGCGTGAATCT 59.540 50.000 0.00 0.00 41.39 2.40
4953 5340 1.679153 TGCATACGGAGCGTGAATCTA 59.321 47.619 0.00 0.00 41.39 1.98
4954 5341 2.052157 GCATACGGAGCGTGAATCTAC 58.948 52.381 0.00 0.00 41.39 2.59
4955 5342 2.543031 GCATACGGAGCGTGAATCTACA 60.543 50.000 0.00 0.00 41.39 2.74
4956 5343 2.838386 TACGGAGCGTGAATCTACAC 57.162 50.000 0.00 0.00 41.39 2.90
4957 5344 1.174783 ACGGAGCGTGAATCTACACT 58.825 50.000 0.00 0.00 39.18 3.55
4958 5345 1.132643 ACGGAGCGTGAATCTACACTC 59.867 52.381 0.00 0.00 39.18 3.51
4959 5346 1.402259 CGGAGCGTGAATCTACACTCT 59.598 52.381 0.00 0.00 38.32 3.24
4960 5347 2.612672 CGGAGCGTGAATCTACACTCTA 59.387 50.000 0.00 0.00 36.23 2.43
4961 5348 3.064958 CGGAGCGTGAATCTACACTCTAA 59.935 47.826 0.00 0.00 36.23 2.10
4962 5349 4.438336 CGGAGCGTGAATCTACACTCTAAA 60.438 45.833 0.00 0.00 36.23 1.85
4963 5350 5.408356 GGAGCGTGAATCTACACTCTAAAA 58.592 41.667 0.00 0.00 36.23 1.52
4964 5351 6.043411 GGAGCGTGAATCTACACTCTAAAAT 58.957 40.000 0.00 0.00 36.23 1.82
4965 5352 7.201145 GGAGCGTGAATCTACACTCTAAAATA 58.799 38.462 0.00 0.00 36.23 1.40
4966 5353 7.868415 GGAGCGTGAATCTACACTCTAAAATAT 59.132 37.037 0.00 0.00 36.23 1.28
4967 5354 8.581057 AGCGTGAATCTACACTCTAAAATATG 57.419 34.615 0.00 0.00 34.69 1.78
4968 5355 8.198109 AGCGTGAATCTACACTCTAAAATATGT 58.802 33.333 0.00 0.00 34.69 2.29
4969 5356 8.818057 GCGTGAATCTACACTCTAAAATATGTT 58.182 33.333 0.00 0.00 38.47 2.71
4992 5379 9.081204 TGTTTATATACATCCGTATGTGGTAGT 57.919 33.333 3.56 0.00 45.99 2.73
4993 5380 9.565213 GTTTATATACATCCGTATGTGGTAGTC 57.435 37.037 3.56 0.00 45.99 2.59
4994 5381 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
4995 5382 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
4996 5383 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
4997 5384 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
4998 5385 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
4999 5386 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
5000 5387 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
5001 5388 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
5002 5389 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
5003 5390 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
5004 5391 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
5005 5392 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
5006 5393 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
5007 5394 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
5008 5395 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
5009 5396 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
5010 5397 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
5011 5398 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
5012 5399 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
5016 5403 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
5017 5404 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
5034 5421 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
5035 5422 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5036 5423 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5037 5424 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5058 5445 7.615365 AGGGAGTATTTTGCATGACAATAGAAA 59.385 33.333 0.00 0.00 38.31 2.52
5060 5447 9.638239 GGAGTATTTTGCATGACAATAGAAAAA 57.362 29.630 0.00 0.00 38.31 1.94
5074 5462 5.952526 ATAGAAAAACAACCCCGTAACAG 57.047 39.130 0.00 0.00 0.00 3.16
5133 5521 0.665835 TGCTTTCGCGTGGTTTTCAT 59.334 45.000 5.77 0.00 39.65 2.57
5189 5577 4.759793 TCTCCCTATGCTAACCAGGATA 57.240 45.455 0.00 0.00 34.27 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.158143 AGACCCAAGTAACCACTCCTCT 60.158 50.000 0.00 0.00 32.29 3.69
39 40 1.278413 GGAGACCCAAGTAACCACTCC 59.722 57.143 0.00 0.00 36.23 3.85
44 45 0.971386 TCGTGGAGACCCAAGTAACC 59.029 55.000 0.00 0.00 45.59 2.85
145 149 3.961408 ACCGATCTAGTCCACTTAATGCT 59.039 43.478 0.00 0.00 0.00 3.79
206 210 4.159693 GGAAGCGGTGAAGGGAATAAAAAT 59.840 41.667 0.00 0.00 0.00 1.82
207 211 3.508402 GGAAGCGGTGAAGGGAATAAAAA 59.492 43.478 0.00 0.00 0.00 1.94
217 222 3.125316 GTCAGTAAATGGAAGCGGTGAAG 59.875 47.826 0.00 0.00 0.00 3.02
271 276 9.596308 AAACCTTGGAGTAGTTTAACCAATAAT 57.404 29.630 0.00 0.00 40.78 1.28
354 359 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
355 360 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
356 361 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
357 362 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
358 363 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
359 364 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
360 365 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
361 366 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
362 367 8.793592 ACTAAGTTGGGTCATCTATTTTGAAAC 58.206 33.333 0.00 0.00 0.00 2.78
363 368 8.934023 ACTAAGTTGGGTCATCTATTTTGAAA 57.066 30.769 0.00 0.00 0.00 2.69
391 396 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
392 397 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
393 398 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
394 399 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
395 400 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
396 401 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
397 402 6.106673 TCCTCCGTTTCAAAATAGATGACTC 58.893 40.000 0.00 0.00 0.00 3.36
398 403 6.049955 TCCTCCGTTTCAAAATAGATGACT 57.950 37.500 0.00 0.00 0.00 3.41
399 404 6.371825 ACTTCCTCCGTTTCAAAATAGATGAC 59.628 38.462 0.00 0.00 0.00 3.06
400 405 6.472887 ACTTCCTCCGTTTCAAAATAGATGA 58.527 36.000 0.00 0.00 0.00 2.92
401 406 6.743575 ACTTCCTCCGTTTCAAAATAGATG 57.256 37.500 0.00 0.00 0.00 2.90
402 407 7.621796 ACTACTTCCTCCGTTTCAAAATAGAT 58.378 34.615 0.00 0.00 0.00 1.98
403 408 7.001099 ACTACTTCCTCCGTTTCAAAATAGA 57.999 36.000 0.00 0.00 0.00 1.98
404 409 8.248945 TCTACTACTTCCTCCGTTTCAAAATAG 58.751 37.037 0.00 0.00 0.00 1.73
405 410 8.125978 TCTACTACTTCCTCCGTTTCAAAATA 57.874 34.615 0.00 0.00 0.00 1.40
406 411 7.001099 TCTACTACTTCCTCCGTTTCAAAAT 57.999 36.000 0.00 0.00 0.00 1.82
407 412 6.266103 TCTCTACTACTTCCTCCGTTTCAAAA 59.734 38.462 0.00 0.00 0.00 2.44
408 413 5.771666 TCTCTACTACTTCCTCCGTTTCAAA 59.228 40.000 0.00 0.00 0.00 2.69
409 414 5.319453 TCTCTACTACTTCCTCCGTTTCAA 58.681 41.667 0.00 0.00 0.00 2.69
410 415 4.914983 TCTCTACTACTTCCTCCGTTTCA 58.085 43.478 0.00 0.00 0.00 2.69
411 416 5.182760 TGTTCTCTACTACTTCCTCCGTTTC 59.817 44.000 0.00 0.00 0.00 2.78
412 417 5.075493 TGTTCTCTACTACTTCCTCCGTTT 58.925 41.667 0.00 0.00 0.00 3.60
413 418 4.660168 TGTTCTCTACTACTTCCTCCGTT 58.340 43.478 0.00 0.00 0.00 4.44
414 419 4.298103 TGTTCTCTACTACTTCCTCCGT 57.702 45.455 0.00 0.00 0.00 4.69
415 420 5.640189 TTTGTTCTCTACTACTTCCTCCG 57.360 43.478 0.00 0.00 0.00 4.63
416 421 6.756221 TGTTTTGTTCTCTACTACTTCCTCC 58.244 40.000 0.00 0.00 0.00 4.30
417 422 8.834749 AATGTTTTGTTCTCTACTACTTCCTC 57.165 34.615 0.00 0.00 0.00 3.71
418 423 8.429641 TGAATGTTTTGTTCTCTACTACTTCCT 58.570 33.333 0.00 0.00 0.00 3.36
419 424 8.496751 GTGAATGTTTTGTTCTCTACTACTTCC 58.503 37.037 0.00 0.00 0.00 3.46
420 425 9.042008 TGTGAATGTTTTGTTCTCTACTACTTC 57.958 33.333 0.00 0.00 0.00 3.01
421 426 8.958119 TGTGAATGTTTTGTTCTCTACTACTT 57.042 30.769 0.00 0.00 0.00 2.24
422 427 9.561069 AATGTGAATGTTTTGTTCTCTACTACT 57.439 29.630 0.00 0.00 0.00 2.57
523 528 1.228003 CCGCTGTTGGTGGTGGTTA 60.228 57.895 0.00 0.00 40.52 2.85
586 591 3.945285 GCTTCCGGACAAAAATATCCTCA 59.055 43.478 1.83 0.00 32.33 3.86
588 593 3.288092 GGCTTCCGGACAAAAATATCCT 58.712 45.455 1.83 0.00 32.33 3.24
692 697 2.098614 TGGTTAATACTACGTGGCGGA 58.901 47.619 0.00 0.00 0.00 5.54
900 931 2.175499 AGATGAGACAGAGAGGGAGAGG 59.825 54.545 0.00 0.00 0.00 3.69
906 937 3.628942 CAGAGACAGATGAGACAGAGAGG 59.371 52.174 0.00 0.00 0.00 3.69
979 1010 3.802418 AACGGACACGGACACCAGC 62.802 63.158 0.00 0.00 46.48 4.85
1005 1041 1.229529 TCCCCACCTGTCCTCCTTC 60.230 63.158 0.00 0.00 0.00 3.46
1105 1141 4.554036 GATGGACCCCTGCCTCGC 62.554 72.222 0.00 0.00 0.00 5.03
1200 1236 3.438216 TCCATGTTCATGGAGCTGAAA 57.562 42.857 25.03 6.71 45.19 2.69
1929 1971 5.241728 ACGCATAGATAGTGTAGAAGATGCA 59.758 40.000 0.00 0.00 38.65 3.96
2151 2288 8.562892 CATTGCTATAAATCCTCCTTTACACAG 58.437 37.037 0.00 0.00 0.00 3.66
2407 2664 2.031157 AGGCAAATTACTGCGACAACAC 60.031 45.455 0.00 0.00 43.60 3.32
2525 2782 6.560433 CGCTTAAACGAATGTATCTAGCACTG 60.560 42.308 0.00 0.00 34.06 3.66
2792 3108 7.172019 ACGATGAAAAGAAACAATTAGTACCGT 59.828 33.333 0.00 0.00 0.00 4.83
2873 3189 6.663734 AGAAATAGGAAAGTTTGGGATCGAT 58.336 36.000 0.00 0.00 0.00 3.59
2962 3278 4.261072 CCGCGACGTCTAATATAGCCATAT 60.261 45.833 14.70 0.00 0.00 1.78
2963 3279 3.064408 CCGCGACGTCTAATATAGCCATA 59.936 47.826 14.70 0.00 0.00 2.74
2964 3280 2.159421 CCGCGACGTCTAATATAGCCAT 60.159 50.000 14.70 0.00 0.00 4.40
2965 3281 1.198408 CCGCGACGTCTAATATAGCCA 59.802 52.381 14.70 0.00 0.00 4.75
2966 3282 1.198637 ACCGCGACGTCTAATATAGCC 59.801 52.381 14.70 0.00 0.00 3.93
2967 3283 2.608467 ACCGCGACGTCTAATATAGC 57.392 50.000 14.70 6.63 0.00 2.97
2968 3284 4.917887 AGTACCGCGACGTCTAATATAG 57.082 45.455 14.70 0.00 0.00 1.31
3073 3437 4.634012 AGTATTGCAGGGTGTAACTCAA 57.366 40.909 0.00 0.00 42.69 3.02
3093 3457 2.171003 CCAAACCAAAGGAGGCCTTAG 58.829 52.381 6.77 0.00 43.92 2.18
3094 3458 1.783979 TCCAAACCAAAGGAGGCCTTA 59.216 47.619 6.77 0.00 43.92 2.69
3096 3460 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19
3097 3461 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
3101 3465 3.397618 TGAGATTCCTCCAAACCAAAGGA 59.602 43.478 0.00 0.00 38.66 3.36
3102 3466 3.766545 TGAGATTCCTCCAAACCAAAGG 58.233 45.455 0.00 0.00 38.66 3.11
3103 3467 5.591877 CCTATGAGATTCCTCCAAACCAAAG 59.408 44.000 0.00 0.00 38.66 2.77
3104 3468 5.252863 TCCTATGAGATTCCTCCAAACCAAA 59.747 40.000 0.00 0.00 38.66 3.28
3105 3469 4.788075 TCCTATGAGATTCCTCCAAACCAA 59.212 41.667 0.00 0.00 38.66 3.67
3106 3470 4.370776 TCCTATGAGATTCCTCCAAACCA 58.629 43.478 0.00 0.00 38.66 3.67
3107 3471 5.373812 TTCCTATGAGATTCCTCCAAACC 57.626 43.478 0.00 0.00 38.66 3.27
3108 3472 7.286313 AGAATTCCTATGAGATTCCTCCAAAC 58.714 38.462 0.65 0.00 38.66 2.93
3109 3473 7.457380 AGAATTCCTATGAGATTCCTCCAAA 57.543 36.000 0.65 0.00 38.66 3.28
3110 3474 8.013072 TCTAGAATTCCTATGAGATTCCTCCAA 58.987 37.037 0.65 0.00 38.66 3.53
3111 3475 7.539292 TCTAGAATTCCTATGAGATTCCTCCA 58.461 38.462 0.65 0.00 38.66 3.86
3112 3476 7.124147 CCTCTAGAATTCCTATGAGATTCCTCC 59.876 44.444 0.65 0.00 38.66 4.30
3113 3477 7.893302 TCCTCTAGAATTCCTATGAGATTCCTC 59.107 40.741 0.65 0.00 39.86 3.71
3114 3478 7.774713 TCCTCTAGAATTCCTATGAGATTCCT 58.225 38.462 0.65 0.00 30.71 3.36
3115 3479 8.608185 ATCCTCTAGAATTCCTATGAGATTCC 57.392 38.462 0.65 0.00 30.71 3.01
3117 3481 9.713684 CCTATCCTCTAGAATTCCTATGAGATT 57.286 37.037 0.65 0.00 30.71 2.40
3118 3482 9.079239 TCCTATCCTCTAGAATTCCTATGAGAT 57.921 37.037 0.65 1.28 30.71 2.75
3119 3483 8.469924 TCCTATCCTCTAGAATTCCTATGAGA 57.530 38.462 0.65 0.00 30.71 3.27
3120 3484 9.713684 AATCCTATCCTCTAGAATTCCTATGAG 57.286 37.037 0.65 4.96 0.00 2.90
3121 3485 9.707957 GAATCCTATCCTCTAGAATTCCTATGA 57.292 37.037 0.65 0.00 0.00 2.15
3122 3486 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
3157 3521 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
3158 3522 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
3159 3523 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
3160 3524 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
3161 3525 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
3162 3526 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
3163 3527 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
3164 3528 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
3165 3529 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
3166 3530 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
3167 3531 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
3168 3532 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
3169 3533 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
3170 3534 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
3171 3535 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
3172 3536 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
3210 3574 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
3211 3575 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
3212 3576 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
3213 3577 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
3214 3578 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
3215 3579 6.043243 TCCTATGAAATGTGGAGGATAGGAAC 59.957 42.308 0.00 0.00 38.86 3.62
3216 3580 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
3217 3581 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
3218 3582 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
3219 3583 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
3221 3585 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
3222 3586 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
3236 3600 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
3237 3601 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
3238 3602 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
3241 3605 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
3242 3606 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
3243 3607 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
3244 3608 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
3245 3609 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
3246 3610 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
3247 3611 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
3248 3612 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
3249 3613 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
3250 3614 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
3251 3615 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
3252 3616 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
3263 3627 8.334633 GGTTGACACCAAAGGAATTTTTCCATT 61.335 37.037 8.87 0.31 46.88 3.16
3264 3628 6.911529 GGTTGACACCAAAGGAATTTTTCCAT 60.912 38.462 8.87 0.00 46.88 3.41
3265 3629 5.627968 GGTTGACACCAAAGGAATTTTTCCA 60.628 40.000 8.87 0.00 46.88 3.53
3266 3630 4.814234 GGTTGACACCAAAGGAATTTTTCC 59.186 41.667 0.00 0.00 45.80 3.13
3267 3631 5.984233 GGTTGACACCAAAGGAATTTTTC 57.016 39.130 0.00 0.00 43.61 2.29
3292 3656 8.503428 AGTAGGAATAGGAAATGAGATGTCAT 57.497 34.615 0.00 0.00 46.01 3.06
3293 3657 7.565029 TGAGTAGGAATAGGAAATGAGATGTCA 59.435 37.037 0.00 0.00 37.02 3.58
3294 3658 7.957002 TGAGTAGGAATAGGAAATGAGATGTC 58.043 38.462 0.00 0.00 0.00 3.06
3295 3659 7.921041 TGAGTAGGAATAGGAAATGAGATGT 57.079 36.000 0.00 0.00 0.00 3.06
3313 3677 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
3314 3678 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
3315 3679 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
3316 3680 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
3317 3681 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
3318 3682 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
3328 3692 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
3329 3693 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
3330 3694 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
3331 3695 9.685276 TTTTGTAGGAAATGAGATGACATGTAT 57.315 29.630 0.00 0.00 0.00 2.29
3332 3696 9.685276 ATTTTGTAGGAAATGAGATGACATGTA 57.315 29.630 0.00 0.00 0.00 2.29
3333 3697 8.585471 ATTTTGTAGGAAATGAGATGACATGT 57.415 30.769 0.00 0.00 0.00 3.21
3334 3698 9.512435 GAATTTTGTAGGAAATGAGATGACATG 57.488 33.333 0.00 0.00 30.06 3.21
3335 3699 9.246670 TGAATTTTGTAGGAAATGAGATGACAT 57.753 29.630 0.00 0.00 30.06 3.06
3336 3700 8.634335 TGAATTTTGTAGGAAATGAGATGACA 57.366 30.769 0.00 0.00 30.06 3.58
3346 3710 9.893634 TCGTAGGAATATGAATTTTGTAGGAAA 57.106 29.630 0.00 0.00 0.00 3.13
3358 3722 9.937876 AGGATAGGATTATCGTAGGAATATGAA 57.062 33.333 1.23 0.00 37.20 2.57
3363 3727 9.937876 TTCATAGGATAGGATTATCGTAGGAAT 57.062 33.333 14.87 0.00 44.20 3.01
3364 3728 9.186837 GTTCATAGGATAGGATTATCGTAGGAA 57.813 37.037 14.87 14.87 45.40 3.36
3365 3729 7.778853 GGTTCATAGGATAGGATTATCGTAGGA 59.221 40.741 7.24 7.24 41.67 2.94
3366 3730 7.560262 TGGTTCATAGGATAGGATTATCGTAGG 59.440 40.741 1.23 3.78 39.00 3.18
3367 3731 8.521170 TGGTTCATAGGATAGGATTATCGTAG 57.479 38.462 1.23 0.00 39.00 3.51
3368 3732 8.888836 TTGGTTCATAGGATAGGATTATCGTA 57.111 34.615 0.00 0.00 39.58 3.43
3369 3733 7.792364 TTGGTTCATAGGATAGGATTATCGT 57.208 36.000 0.00 0.00 37.20 3.73
3370 3734 9.155975 CTTTTGGTTCATAGGATAGGATTATCG 57.844 37.037 0.00 0.00 37.20 2.92
3373 3737 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
3374 3738 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
3375 3739 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
3376 3740 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
3377 3741 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
3378 3742 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
3379 3743 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
3380 3744 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
3381 3745 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
3382 3746 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
3383 3747 4.336713 GCTTAGGCCTCTTTTGGTTCATAG 59.663 45.833 9.68 0.00 0.00 2.23
3384 3748 4.263727 TGCTTAGGCCTCTTTTGGTTCATA 60.264 41.667 9.68 0.00 37.74 2.15
3385 3749 3.092301 GCTTAGGCCTCTTTTGGTTCAT 58.908 45.455 9.68 0.00 0.00 2.57
3386 3750 2.158534 TGCTTAGGCCTCTTTTGGTTCA 60.159 45.455 9.68 0.00 37.74 3.18
3387 3751 2.514803 TGCTTAGGCCTCTTTTGGTTC 58.485 47.619 9.68 0.00 37.74 3.62
3388 3752 2.675658 TGCTTAGGCCTCTTTTGGTT 57.324 45.000 9.68 0.00 37.74 3.67
3389 3753 2.450476 CATGCTTAGGCCTCTTTTGGT 58.550 47.619 9.68 0.00 37.74 3.67
3390 3754 1.135721 GCATGCTTAGGCCTCTTTTGG 59.864 52.381 9.68 0.00 37.74 3.28
3391 3755 2.097825 AGCATGCTTAGGCCTCTTTTG 58.902 47.619 16.30 3.12 37.74 2.44
3392 3756 2.521547 AGCATGCTTAGGCCTCTTTT 57.478 45.000 16.30 0.00 37.74 2.27
3393 3757 2.521547 AAGCATGCTTAGGCCTCTTT 57.478 45.000 31.09 2.92 37.74 2.52
3394 3758 2.521547 AAAGCATGCTTAGGCCTCTT 57.478 45.000 32.12 12.16 34.84 2.85
3395 3759 2.521547 AAAAGCATGCTTAGGCCTCT 57.478 45.000 32.12 12.93 34.84 3.69
3396 3760 4.614946 CAATAAAAGCATGCTTAGGCCTC 58.385 43.478 32.12 0.00 34.84 4.70
3397 3761 3.181472 GCAATAAAAGCATGCTTAGGCCT 60.181 43.478 32.12 14.47 37.12 5.19
3398 3762 3.126073 GCAATAAAAGCATGCTTAGGCC 58.874 45.455 32.12 14.99 37.12 5.19
3399 3763 3.784338 TGCAATAAAAGCATGCTTAGGC 58.216 40.909 32.12 26.77 40.66 3.93
3864 4232 1.282738 GGGGGTTATGGTCCTTTTCGA 59.717 52.381 0.00 0.00 0.00 3.71
4055 4423 4.962155 ACGACTCCTTGTGAGAAAAGATT 58.038 39.130 0.00 0.00 44.42 2.40
4078 4446 4.593206 CCTATTTCTGTGTGGGGCTATAGA 59.407 45.833 3.21 0.00 0.00 1.98
4083 4451 0.034089 GCCTATTTCTGTGTGGGGCT 60.034 55.000 0.00 0.00 35.73 5.19
4155 4523 1.467734 GCCTGCTGTCAGTCAAATCAG 59.532 52.381 0.93 0.00 38.66 2.90
4160 4528 2.431683 GGGCCTGCTGTCAGTCAA 59.568 61.111 0.84 0.00 38.66 3.18
4218 4586 1.492319 CGGTCAACGTTCTCCGCAAA 61.492 55.000 21.81 0.00 41.42 3.68
4224 4592 2.741211 GGGCCGGTCAACGTTCTC 60.741 66.667 9.07 0.00 42.24 2.87
4463 4837 3.476552 CAAACCCAGACAAGCTCTACAA 58.523 45.455 0.00 0.00 0.00 2.41
4504 4881 6.292919 GCGCAAAGTTAGAAGAAGAAGAAGAA 60.293 38.462 0.30 0.00 0.00 2.52
4505 4882 5.177696 GCGCAAAGTTAGAAGAAGAAGAAGA 59.822 40.000 0.30 0.00 0.00 2.87
4506 4883 5.378180 GCGCAAAGTTAGAAGAAGAAGAAG 58.622 41.667 0.30 0.00 0.00 2.85
4536 4913 8.964772 TCAAACCCAACTTATCTAGTACTAGTC 58.035 37.037 25.58 0.00 35.54 2.59
4538 4915 8.968969 ACTCAAACCCAACTTATCTAGTACTAG 58.031 37.037 21.87 21.87 35.54 2.57
4539 4916 8.890410 ACTCAAACCCAACTTATCTAGTACTA 57.110 34.615 1.89 1.89 35.54 1.82
4540 4917 7.793948 ACTCAAACCCAACTTATCTAGTACT 57.206 36.000 0.00 0.00 35.54 2.73
4541 4918 8.843885 AAACTCAAACCCAACTTATCTAGTAC 57.156 34.615 0.00 0.00 35.54 2.73
4542 4919 8.653191 TGAAACTCAAACCCAACTTATCTAGTA 58.347 33.333 0.00 0.00 35.54 1.82
4543 4920 7.514721 TGAAACTCAAACCCAACTTATCTAGT 58.485 34.615 0.00 0.00 39.32 2.57
4571 4948 3.446161 CCCAGGACTTAGTTACATCGACA 59.554 47.826 0.00 0.00 0.00 4.35
4582 4959 4.518249 GTTTCTTGGATCCCAGGACTTAG 58.482 47.826 12.73 0.00 39.34 2.18
4589 4966 1.279271 AGGACGTTTCTTGGATCCCAG 59.721 52.381 9.90 8.07 33.81 4.45
4706 5093 6.291269 GCAGATATAAGCAACGCATTCAAAAC 60.291 38.462 0.00 0.00 0.00 2.43
4734 5121 4.329462 AAAACGCCAGGCAATTAAGAAA 57.671 36.364 13.30 0.00 0.00 2.52
4737 5124 4.992688 TGATAAAACGCCAGGCAATTAAG 58.007 39.130 13.30 0.00 0.00 1.85
4750 5137 3.550561 TCAAAGCGTGCTTGATAAAACG 58.449 40.909 8.03 0.00 36.26 3.60
4845 5232 6.392625 TTGAAATACCGTGAATGTCCAAAA 57.607 33.333 0.00 0.00 0.00 2.44
4866 5253 4.096382 AGGGAGTATAAGCAACGCATTTTG 59.904 41.667 0.00 0.00 0.00 2.44
4868 5255 3.877508 GAGGGAGTATAAGCAACGCATTT 59.122 43.478 0.00 0.00 0.00 2.32
4882 5269 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
4883 5270 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
4884 5271 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
4885 5272 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
4886 5273 7.553044 AGAAGACAAATATTTAGAAACGGAGGG 59.447 37.037 0.00 0.00 0.00 4.30
4887 5274 8.494016 AGAAGACAAATATTTAGAAACGGAGG 57.506 34.615 0.00 0.00 0.00 4.30
4903 5290 9.396022 ACTTGTTGAAATCTCTAAGAAGACAAA 57.604 29.630 0.00 0.00 31.47 2.83
4904 5291 8.830580 CACTTGTTGAAATCTCTAAGAAGACAA 58.169 33.333 0.00 0.00 31.47 3.18
4905 5292 8.204160 TCACTTGTTGAAATCTCTAAGAAGACA 58.796 33.333 0.00 0.00 31.47 3.41
4906 5293 8.491950 GTCACTTGTTGAAATCTCTAAGAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4907 5294 8.424918 AGTCACTTGTTGAAATCTCTAAGAAGA 58.575 33.333 0.00 0.00 35.39 2.87
4908 5295 8.494347 CAGTCACTTGTTGAAATCTCTAAGAAG 58.506 37.037 0.00 0.00 35.39 2.85
4909 5296 7.041780 GCAGTCACTTGTTGAAATCTCTAAGAA 60.042 37.037 0.00 0.00 35.39 2.52
4910 5297 6.425114 GCAGTCACTTGTTGAAATCTCTAAGA 59.575 38.462 0.00 0.00 35.39 2.10
4911 5298 6.203530 TGCAGTCACTTGTTGAAATCTCTAAG 59.796 38.462 0.00 0.00 35.39 2.18
4912 5299 6.054941 TGCAGTCACTTGTTGAAATCTCTAA 58.945 36.000 0.00 0.00 35.39 2.10
4913 5300 5.610398 TGCAGTCACTTGTTGAAATCTCTA 58.390 37.500 0.00 0.00 35.39 2.43
4914 5301 4.454678 TGCAGTCACTTGTTGAAATCTCT 58.545 39.130 0.00 0.00 35.39 3.10
4915 5302 4.818534 TGCAGTCACTTGTTGAAATCTC 57.181 40.909 0.00 0.00 35.39 2.75
4916 5303 5.106948 CGTATGCAGTCACTTGTTGAAATCT 60.107 40.000 0.00 0.00 35.39 2.40
4917 5304 5.082059 CGTATGCAGTCACTTGTTGAAATC 58.918 41.667 0.00 0.00 35.39 2.17
4918 5305 4.083324 CCGTATGCAGTCACTTGTTGAAAT 60.083 41.667 0.00 0.00 35.39 2.17
4919 5306 3.249799 CCGTATGCAGTCACTTGTTGAAA 59.750 43.478 0.00 0.00 35.39 2.69
4920 5307 2.805671 CCGTATGCAGTCACTTGTTGAA 59.194 45.455 0.00 0.00 35.39 2.69
4921 5308 2.036604 TCCGTATGCAGTCACTTGTTGA 59.963 45.455 0.00 0.00 0.00 3.18
4922 5309 2.412870 TCCGTATGCAGTCACTTGTTG 58.587 47.619 0.00 0.00 0.00 3.33
4923 5310 2.688507 CTCCGTATGCAGTCACTTGTT 58.311 47.619 0.00 0.00 0.00 2.83
4924 5311 1.673033 GCTCCGTATGCAGTCACTTGT 60.673 52.381 0.00 0.00 0.00 3.16
4925 5312 1.002366 GCTCCGTATGCAGTCACTTG 58.998 55.000 0.00 0.00 0.00 3.16
4926 5313 0.458543 CGCTCCGTATGCAGTCACTT 60.459 55.000 0.00 0.00 0.00 3.16
4927 5314 1.139734 CGCTCCGTATGCAGTCACT 59.860 57.895 0.00 0.00 0.00 3.41
4928 5315 1.153823 ACGCTCCGTATGCAGTCAC 60.154 57.895 0.00 0.00 38.73 3.67
4929 5316 1.153842 CACGCTCCGTATGCAGTCA 60.154 57.895 0.00 0.00 38.32 3.41
4930 5317 0.457853 TTCACGCTCCGTATGCAGTC 60.458 55.000 0.00 0.00 38.32 3.51
4931 5318 0.175760 ATTCACGCTCCGTATGCAGT 59.824 50.000 0.00 0.00 38.32 4.40
4932 5319 0.855349 GATTCACGCTCCGTATGCAG 59.145 55.000 0.00 0.00 38.32 4.41
4933 5320 0.459899 AGATTCACGCTCCGTATGCA 59.540 50.000 0.00 0.00 38.32 3.96
4934 5321 2.052157 GTAGATTCACGCTCCGTATGC 58.948 52.381 0.00 0.00 38.32 3.14
4935 5322 3.043586 GTGTAGATTCACGCTCCGTATG 58.956 50.000 0.00 0.00 38.32 2.39
4936 5323 2.950309 AGTGTAGATTCACGCTCCGTAT 59.050 45.455 0.00 0.00 42.40 3.06
4937 5324 2.353889 GAGTGTAGATTCACGCTCCGTA 59.646 50.000 13.99 0.00 45.96 4.02
4938 5325 1.132643 GAGTGTAGATTCACGCTCCGT 59.867 52.381 13.99 0.00 45.96 4.69
4939 5326 1.828832 GAGTGTAGATTCACGCTCCG 58.171 55.000 13.99 0.00 45.96 4.63
4942 5329 8.198109 ACATATTTTAGAGTGTAGATTCACGCT 58.802 33.333 7.98 7.98 46.57 5.07
4943 5330 8.354011 ACATATTTTAGAGTGTAGATTCACGC 57.646 34.615 0.00 0.00 42.40 5.34
4966 5353 9.081204 ACTACCACATACGGATGTATATAAACA 57.919 33.333 14.23 0.00 44.82 2.83
4967 5354 9.565213 GACTACCACATACGGATGTATATAAAC 57.435 37.037 14.23 0.00 44.82 2.01
4968 5355 8.742777 GGACTACCACATACGGATGTATATAAA 58.257 37.037 14.23 0.00 44.82 1.40
4969 5356 7.889600 TGGACTACCACATACGGATGTATATAA 59.110 37.037 14.23 0.00 44.82 0.98
4970 5357 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
4971 5358 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
4972 5359 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
4973 5360 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
4974 5361 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
4990 5377 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
4991 5378 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
5008 5395 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
5009 5396 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
5010 5397 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5011 5398 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5012 5399 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5013 5400 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5014 5401 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5015 5402 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5016 5403 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5017 5404 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
5018 5405 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
5019 5406 7.277396 CAAAATACTCCCTCCGTTCCTAAATA 58.723 38.462 0.00 0.00 0.00 1.40
5020 5407 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
5021 5408 5.493809 CAAAATACTCCCTCCGTTCCTAAA 58.506 41.667 0.00 0.00 0.00 1.85
5022 5409 4.624604 GCAAAATACTCCCTCCGTTCCTAA 60.625 45.833 0.00 0.00 0.00 2.69
5023 5410 3.118519 GCAAAATACTCCCTCCGTTCCTA 60.119 47.826 0.00 0.00 0.00 2.94
5024 5411 2.355818 GCAAAATACTCCCTCCGTTCCT 60.356 50.000 0.00 0.00 0.00 3.36
5025 5412 2.014857 GCAAAATACTCCCTCCGTTCC 58.985 52.381 0.00 0.00 0.00 3.62
5026 5413 2.706890 TGCAAAATACTCCCTCCGTTC 58.293 47.619 0.00 0.00 0.00 3.95
5027 5414 2.871096 TGCAAAATACTCCCTCCGTT 57.129 45.000 0.00 0.00 0.00 4.44
5028 5415 2.238646 TCATGCAAAATACTCCCTCCGT 59.761 45.455 0.00 0.00 0.00 4.69
5029 5416 2.614057 GTCATGCAAAATACTCCCTCCG 59.386 50.000 0.00 0.00 0.00 4.63
5030 5417 3.620488 TGTCATGCAAAATACTCCCTCC 58.380 45.455 0.00 0.00 0.00 4.30
5031 5418 5.841957 ATTGTCATGCAAAATACTCCCTC 57.158 39.130 6.65 0.00 40.91 4.30
5032 5419 6.662755 TCTATTGTCATGCAAAATACTCCCT 58.337 36.000 6.65 0.00 40.91 4.20
5033 5420 6.942532 TCTATTGTCATGCAAAATACTCCC 57.057 37.500 6.65 0.00 40.91 4.30
5034 5421 9.638239 TTTTTCTATTGTCATGCAAAATACTCC 57.362 29.630 6.65 0.00 40.91 3.85
5036 5423 9.979578 TGTTTTTCTATTGTCATGCAAAATACT 57.020 25.926 6.65 0.00 40.91 2.12
5058 5445 0.824595 GGGCTGTTACGGGGTTGTTT 60.825 55.000 0.00 0.00 0.00 2.83
5060 5447 1.785353 ATGGGCTGTTACGGGGTTGT 61.785 55.000 0.00 0.00 0.00 3.32
5063 5450 1.218844 AATATGGGCTGTTACGGGGT 58.781 50.000 0.00 0.00 0.00 4.95
5095 5483 7.432350 AAAGCAATGTTGTGAAGTTTCAAAA 57.568 28.000 0.00 0.00 39.21 2.44
5133 5521 5.793030 AACAAATATTCGGTGGAAACCAA 57.207 34.783 0.00 0.00 34.18 3.67
5167 5555 3.414759 TCCTGGTTAGCATAGGGAGAA 57.585 47.619 0.00 0.00 32.39 2.87
5189 5577 4.033709 AGGATAACCTATGCCGCATCTAT 58.966 43.478 9.71 3.33 45.83 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.