Multiple sequence alignment - TraesCS5D01G244100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G244100 chr5D 100.000 2649 0 0 960 3608 352692898 352695546 0.000000e+00 4892.0
1 TraesCS5D01G244100 chr5D 100.000 622 0 0 1 622 352691939 352692560 0.000000e+00 1149.0
2 TraesCS5D01G244100 chr5A 94.807 1964 78 15 1079 3026 453343390 453345345 0.000000e+00 3040.0
3 TraesCS5D01G244100 chr5A 95.597 318 13 1 960 1276 453343307 453343624 3.210000e-140 508.0
4 TraesCS5D01G244100 chr5A 82.911 474 51 14 1 459 453288731 453289189 2.020000e-107 399.0
5 TraesCS5D01G244100 chr5A 88.430 121 12 2 492 612 453343080 453343198 1.040000e-30 145.0
6 TraesCS5D01G244100 chr5B 91.314 2245 128 25 1079 3273 415648294 415650521 0.000000e+00 3003.0
7 TraesCS5D01G244100 chr5B 95.950 321 9 2 960 1276 415648208 415648528 5.340000e-143 518.0
8 TraesCS5D01G244100 chr5B 86.702 188 13 7 3413 3597 415650863 415651041 7.900000e-47 198.0
9 TraesCS5D01G244100 chr2B 84.034 119 19 0 106 224 704356008 704355890 8.190000e-22 115.0
10 TraesCS5D01G244100 chr6A 84.956 113 15 1 114 224 116603859 116603747 2.940000e-21 113.0
11 TraesCS5D01G244100 chr4D 84.615 104 14 2 122 224 459389130 459389028 6.370000e-18 102.0
12 TraesCS5D01G244100 chr3B 90.278 72 7 0 113 184 751226845 751226916 1.070000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G244100 chr5D 352691939 352695546 3607 False 3020.500000 4892 100.000000 1 3608 2 chr5D.!!$F1 3607
1 TraesCS5D01G244100 chr5A 453343080 453345345 2265 False 1231.000000 3040 92.944667 492 3026 3 chr5A.!!$F2 2534
2 TraesCS5D01G244100 chr5B 415648208 415651041 2833 False 1239.666667 3003 91.322000 960 3597 3 chr5B.!!$F1 2637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.032615 AGCCAAACTTGACCAACCCA 60.033 50.0 0.0 0.0 0.0 4.51 F
221 222 0.038310 TGCTTCCCGACAGAGAGAGA 59.962 55.0 0.0 0.0 0.0 3.10 F
1569 1574 0.106819 AGGCCGACGAGTACCAGTAT 60.107 55.0 0.0 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1574 1.710996 CCTCCTCCTCCTCCTCGCTA 61.711 65.0 0.0 0.0 0.00 4.26 R
1663 1674 1.853963 AAGCTACCAGACTCATCGGT 58.146 50.0 0.0 0.0 36.27 4.69 R
3282 3325 0.106819 ACAGATCATGGAAGGGCAGC 60.107 55.0 0.0 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.963172 AAAAGTCACCCGTGAAGGTC 58.037 50.000 0.00 0.00 41.85 3.85
20 21 0.108019 AAAGTCACCCGTGAAGGTCC 59.892 55.000 0.00 0.00 41.85 4.46
21 22 1.765597 AAGTCACCCGTGAAGGTCCC 61.766 60.000 0.00 0.00 41.85 4.46
22 23 3.307906 TCACCCGTGAAGGTCCCG 61.308 66.667 0.00 0.00 38.39 5.14
25 26 4.323477 CCCGTGAAGGTCCCGCAA 62.323 66.667 0.00 0.00 38.74 4.85
26 27 2.742372 CCGTGAAGGTCCCGCAAG 60.742 66.667 0.00 0.00 34.51 4.01
38 39 4.687464 CGCAAGGGGTAAACTCGT 57.313 55.556 0.00 0.00 0.00 4.18
39 40 2.922779 CGCAAGGGGTAAACTCGTT 58.077 52.632 0.00 0.00 0.00 3.85
40 41 2.083167 CGCAAGGGGTAAACTCGTTA 57.917 50.000 0.00 0.00 0.00 3.18
41 42 1.997606 CGCAAGGGGTAAACTCGTTAG 59.002 52.381 0.00 0.00 0.00 2.34
42 43 2.611224 CGCAAGGGGTAAACTCGTTAGT 60.611 50.000 0.00 0.00 37.65 2.24
66 67 4.394439 TTTTAGCCAAACTTGACCAACC 57.606 40.909 0.00 0.00 0.00 3.77
67 68 1.989706 TAGCCAAACTTGACCAACCC 58.010 50.000 0.00 0.00 0.00 4.11
68 69 0.032615 AGCCAAACTTGACCAACCCA 60.033 50.000 0.00 0.00 0.00 4.51
69 70 1.047801 GCCAAACTTGACCAACCCAT 58.952 50.000 0.00 0.00 0.00 4.00
70 71 2.158385 AGCCAAACTTGACCAACCCATA 60.158 45.455 0.00 0.00 0.00 2.74
71 72 2.630580 GCCAAACTTGACCAACCCATAA 59.369 45.455 0.00 0.00 0.00 1.90
72 73 3.306019 GCCAAACTTGACCAACCCATAAG 60.306 47.826 0.00 0.00 0.00 1.73
73 74 3.258123 CCAAACTTGACCAACCCATAAGG 59.742 47.826 0.00 0.00 43.78 2.69
85 86 3.864789 CCCATAAGGTAAGACCATGCT 57.135 47.619 0.00 0.00 41.95 3.79
86 87 4.170468 CCCATAAGGTAAGACCATGCTT 57.830 45.455 0.00 0.00 41.95 3.91
87 88 5.304686 CCCATAAGGTAAGACCATGCTTA 57.695 43.478 0.00 0.00 41.95 3.09
88 89 5.308825 CCCATAAGGTAAGACCATGCTTAG 58.691 45.833 0.00 0.00 41.95 2.18
89 90 4.757149 CCATAAGGTAAGACCATGCTTAGC 59.243 45.833 11.95 11.95 44.85 3.09
91 92 2.311124 GGTAAGACCATGCTTAGCGT 57.689 50.000 0.00 0.00 38.56 5.07
92 93 3.447918 GGTAAGACCATGCTTAGCGTA 57.552 47.619 0.00 0.00 38.56 4.42
93 94 3.788937 GGTAAGACCATGCTTAGCGTAA 58.211 45.455 0.00 0.00 38.56 3.18
94 95 3.554731 GGTAAGACCATGCTTAGCGTAAC 59.445 47.826 0.00 0.00 38.56 2.50
95 96 2.311124 AGACCATGCTTAGCGTAACC 57.689 50.000 0.00 0.00 0.00 2.85
96 97 1.831736 AGACCATGCTTAGCGTAACCT 59.168 47.619 0.00 0.00 0.00 3.50
97 98 2.236395 AGACCATGCTTAGCGTAACCTT 59.764 45.455 0.00 0.00 0.00 3.50
98 99 2.351726 GACCATGCTTAGCGTAACCTTG 59.648 50.000 0.00 0.00 0.00 3.61
99 100 2.027561 ACCATGCTTAGCGTAACCTTGA 60.028 45.455 0.00 0.00 0.00 3.02
100 101 2.609459 CCATGCTTAGCGTAACCTTGAG 59.391 50.000 0.00 0.00 0.00 3.02
101 102 3.262420 CATGCTTAGCGTAACCTTGAGT 58.738 45.455 0.00 0.00 0.00 3.41
102 103 3.396260 TGCTTAGCGTAACCTTGAGTT 57.604 42.857 0.00 0.00 42.83 3.01
103 104 3.735591 TGCTTAGCGTAACCTTGAGTTT 58.264 40.909 0.00 0.00 40.05 2.66
104 105 4.131596 TGCTTAGCGTAACCTTGAGTTTT 58.868 39.130 0.00 0.00 40.05 2.43
105 106 4.577283 TGCTTAGCGTAACCTTGAGTTTTT 59.423 37.500 0.00 0.00 40.05 1.94
136 137 7.859613 CTTTTTAAGAAAAGCTTGCTAGACC 57.140 36.000 0.00 0.00 43.60 3.85
137 138 7.582667 TTTTTAAGAAAAGCTTGCTAGACCT 57.417 32.000 0.00 0.00 37.42 3.85
138 139 7.582667 TTTTAAGAAAAGCTTGCTAGACCTT 57.417 32.000 0.00 0.00 37.42 3.50
139 140 7.582667 TTTAAGAAAAGCTTGCTAGACCTTT 57.417 32.000 0.00 0.00 37.42 3.11
140 141 8.685838 TTTAAGAAAAGCTTGCTAGACCTTTA 57.314 30.769 0.00 0.00 37.42 1.85
141 142 8.863872 TTAAGAAAAGCTTGCTAGACCTTTAT 57.136 30.769 0.00 0.00 37.42 1.40
142 143 7.767250 AAGAAAAGCTTGCTAGACCTTTATT 57.233 32.000 0.00 0.00 34.93 1.40
143 144 7.150783 AGAAAAGCTTGCTAGACCTTTATTG 57.849 36.000 0.00 0.00 0.00 1.90
144 145 6.942576 AGAAAAGCTTGCTAGACCTTTATTGA 59.057 34.615 0.00 0.00 0.00 2.57
145 146 7.613411 AGAAAAGCTTGCTAGACCTTTATTGAT 59.387 33.333 0.00 0.00 0.00 2.57
146 147 7.709149 AAAGCTTGCTAGACCTTTATTGATT 57.291 32.000 0.00 0.00 0.00 2.57
147 148 8.807948 AAAGCTTGCTAGACCTTTATTGATTA 57.192 30.769 0.00 0.00 0.00 1.75
148 149 8.443953 AAGCTTGCTAGACCTTTATTGATTAG 57.556 34.615 0.00 0.00 0.00 1.73
149 150 6.484977 AGCTTGCTAGACCTTTATTGATTAGC 59.515 38.462 0.00 0.00 34.24 3.09
150 151 6.484977 GCTTGCTAGACCTTTATTGATTAGCT 59.515 38.462 0.00 0.00 34.62 3.32
151 152 7.657761 GCTTGCTAGACCTTTATTGATTAGCTA 59.342 37.037 0.00 0.00 34.62 3.32
152 153 9.547753 CTTGCTAGACCTTTATTGATTAGCTAA 57.452 33.333 8.99 8.99 34.62 3.09
153 154 9.899661 TTGCTAGACCTTTATTGATTAGCTAAA 57.100 29.630 10.85 0.00 34.62 1.85
154 155 9.899661 TGCTAGACCTTTATTGATTAGCTAAAA 57.100 29.630 10.85 1.34 34.62 1.52
161 162 8.958043 CCTTTATTGATTAGCTAAAATGTTCGC 58.042 33.333 10.85 0.00 0.00 4.70
162 163 9.502145 CTTTATTGATTAGCTAAAATGTTCGCA 57.498 29.630 10.85 0.00 0.00 5.10
163 164 9.502145 TTTATTGATTAGCTAAAATGTTCGCAG 57.498 29.630 10.85 0.00 0.00 5.18
164 165 5.484173 TGATTAGCTAAAATGTTCGCAGG 57.516 39.130 10.85 0.00 0.00 4.85
165 166 4.335315 TGATTAGCTAAAATGTTCGCAGGG 59.665 41.667 10.85 0.00 0.00 4.45
166 167 2.489938 AGCTAAAATGTTCGCAGGGA 57.510 45.000 0.00 0.00 0.00 4.20
167 168 3.004752 AGCTAAAATGTTCGCAGGGAT 57.995 42.857 0.00 0.00 0.00 3.85
168 169 3.356290 AGCTAAAATGTTCGCAGGGATT 58.644 40.909 0.00 0.00 0.00 3.01
169 170 4.523083 AGCTAAAATGTTCGCAGGGATTA 58.477 39.130 0.00 0.00 0.00 1.75
170 171 5.133221 AGCTAAAATGTTCGCAGGGATTAT 58.867 37.500 0.00 0.00 0.00 1.28
171 172 6.296026 AGCTAAAATGTTCGCAGGGATTATA 58.704 36.000 0.00 0.00 0.00 0.98
172 173 6.770785 AGCTAAAATGTTCGCAGGGATTATAA 59.229 34.615 0.00 0.00 0.00 0.98
173 174 7.448469 AGCTAAAATGTTCGCAGGGATTATAAT 59.552 33.333 0.00 0.00 0.00 1.28
174 175 8.082242 GCTAAAATGTTCGCAGGGATTATAATT 58.918 33.333 0.00 0.00 0.00 1.40
175 176 9.398170 CTAAAATGTTCGCAGGGATTATAATTG 57.602 33.333 0.00 0.00 0.00 2.32
176 177 5.964958 ATGTTCGCAGGGATTATAATTGG 57.035 39.130 0.00 0.00 0.00 3.16
177 178 4.141287 TGTTCGCAGGGATTATAATTGGG 58.859 43.478 0.00 3.23 0.00 4.12
178 179 4.142038 GTTCGCAGGGATTATAATTGGGT 58.858 43.478 0.00 0.00 0.00 4.51
179 180 4.015872 TCGCAGGGATTATAATTGGGTC 57.984 45.455 0.00 0.00 0.00 4.46
180 181 3.392947 TCGCAGGGATTATAATTGGGTCA 59.607 43.478 0.00 0.00 0.00 4.02
181 182 4.042809 TCGCAGGGATTATAATTGGGTCAT 59.957 41.667 0.00 0.00 0.00 3.06
182 183 4.156556 CGCAGGGATTATAATTGGGTCATG 59.843 45.833 0.00 0.00 0.00 3.07
183 184 4.082026 GCAGGGATTATAATTGGGTCATGC 60.082 45.833 0.00 4.13 0.00 4.06
184 185 4.156556 CAGGGATTATAATTGGGTCATGCG 59.843 45.833 0.00 0.00 0.00 4.73
185 186 3.443681 GGGATTATAATTGGGTCATGCGG 59.556 47.826 0.00 0.00 0.00 5.69
186 187 4.331968 GGATTATAATTGGGTCATGCGGA 58.668 43.478 0.00 0.00 0.00 5.54
187 188 4.396166 GGATTATAATTGGGTCATGCGGAG 59.604 45.833 0.00 0.00 0.00 4.63
188 189 4.431416 TTATAATTGGGTCATGCGGAGT 57.569 40.909 0.00 0.00 0.00 3.85
189 190 5.554437 TTATAATTGGGTCATGCGGAGTA 57.446 39.130 0.00 0.00 0.00 2.59
190 191 2.038387 AATTGGGTCATGCGGAGTAC 57.962 50.000 0.00 0.00 0.00 2.73
191 192 1.204146 ATTGGGTCATGCGGAGTACT 58.796 50.000 0.00 0.00 0.00 2.73
192 193 0.535335 TTGGGTCATGCGGAGTACTC 59.465 55.000 14.87 14.87 0.00 2.59
193 194 0.613572 TGGGTCATGCGGAGTACTCA 60.614 55.000 23.91 5.18 0.00 3.41
194 195 0.535335 GGGTCATGCGGAGTACTCAA 59.465 55.000 23.91 9.65 0.00 3.02
195 196 1.641577 GGTCATGCGGAGTACTCAAC 58.358 55.000 23.91 15.12 0.00 3.18
196 197 1.641577 GTCATGCGGAGTACTCAACC 58.358 55.000 23.91 11.63 0.00 3.77
197 198 1.067142 GTCATGCGGAGTACTCAACCA 60.067 52.381 23.91 16.46 0.00 3.67
198 199 1.067142 TCATGCGGAGTACTCAACCAC 60.067 52.381 23.91 8.70 0.00 4.16
199 200 0.108804 ATGCGGAGTACTCAACCACG 60.109 55.000 23.91 17.63 0.00 4.94
200 201 1.445582 GCGGAGTACTCAACCACGG 60.446 63.158 23.91 2.98 0.00 4.94
201 202 1.870055 GCGGAGTACTCAACCACGGA 61.870 60.000 23.91 0.00 0.00 4.69
202 203 0.815734 CGGAGTACTCAACCACGGAT 59.184 55.000 23.91 0.00 0.00 4.18
203 204 1.469251 CGGAGTACTCAACCACGGATG 60.469 57.143 23.91 0.00 0.00 3.51
204 205 1.641577 GAGTACTCAACCACGGATGC 58.358 55.000 18.20 0.00 0.00 3.91
205 206 1.204941 GAGTACTCAACCACGGATGCT 59.795 52.381 18.20 0.00 0.00 3.79
206 207 1.623811 AGTACTCAACCACGGATGCTT 59.376 47.619 0.00 0.00 0.00 3.91
207 208 2.000447 GTACTCAACCACGGATGCTTC 59.000 52.381 0.00 0.00 0.00 3.86
208 209 0.321653 ACTCAACCACGGATGCTTCC 60.322 55.000 8.60 8.60 38.81 3.46
209 210 1.002624 TCAACCACGGATGCTTCCC 60.003 57.895 12.77 0.00 39.01 3.97
216 217 4.844420 GGATGCTTCCCGACAGAG 57.156 61.111 7.41 0.00 35.84 3.35
217 218 2.202866 GGATGCTTCCCGACAGAGA 58.797 57.895 7.41 0.00 35.84 3.10
218 219 0.103937 GGATGCTTCCCGACAGAGAG 59.896 60.000 7.41 0.00 35.84 3.20
219 220 1.107114 GATGCTTCCCGACAGAGAGA 58.893 55.000 0.00 0.00 0.00 3.10
220 221 1.066908 GATGCTTCCCGACAGAGAGAG 59.933 57.143 0.00 0.00 0.00 3.20
221 222 0.038310 TGCTTCCCGACAGAGAGAGA 59.962 55.000 0.00 0.00 0.00 3.10
222 223 1.178276 GCTTCCCGACAGAGAGAGAA 58.822 55.000 0.00 0.00 0.00 2.87
223 224 1.546476 GCTTCCCGACAGAGAGAGAAA 59.454 52.381 0.00 0.00 0.00 2.52
224 225 2.167487 GCTTCCCGACAGAGAGAGAAAT 59.833 50.000 0.00 0.00 0.00 2.17
225 226 3.736740 GCTTCCCGACAGAGAGAGAAATC 60.737 52.174 0.00 0.00 0.00 2.17
226 227 2.017782 TCCCGACAGAGAGAGAAATCG 58.982 52.381 0.00 0.00 0.00 3.34
227 228 1.746220 CCCGACAGAGAGAGAAATCGT 59.254 52.381 0.00 0.00 0.00 3.73
228 229 2.943690 CCCGACAGAGAGAGAAATCGTA 59.056 50.000 0.00 0.00 0.00 3.43
229 230 3.377485 CCCGACAGAGAGAGAAATCGTAA 59.623 47.826 0.00 0.00 0.00 3.18
230 231 4.036971 CCCGACAGAGAGAGAAATCGTAAT 59.963 45.833 0.00 0.00 0.00 1.89
231 232 5.450688 CCCGACAGAGAGAGAAATCGTAATT 60.451 44.000 0.00 0.00 0.00 1.40
232 233 6.238676 CCCGACAGAGAGAGAAATCGTAATTA 60.239 42.308 0.00 0.00 0.00 1.40
233 234 6.853872 CCGACAGAGAGAGAAATCGTAATTAG 59.146 42.308 0.00 0.00 0.00 1.73
234 235 7.254829 CCGACAGAGAGAGAAATCGTAATTAGA 60.255 40.741 0.00 0.00 0.00 2.10
235 236 8.286800 CGACAGAGAGAGAAATCGTAATTAGAT 58.713 37.037 0.00 0.00 0.00 1.98
236 237 9.959749 GACAGAGAGAGAAATCGTAATTAGATT 57.040 33.333 5.04 5.04 39.75 2.40
260 261 6.753107 TTTTTAGGCTAGATGCTTGTAACC 57.247 37.500 0.00 0.00 42.39 2.85
261 262 5.693769 TTTAGGCTAGATGCTTGTAACCT 57.306 39.130 0.00 4.44 42.39 3.50
262 263 3.828875 AGGCTAGATGCTTGTAACCTC 57.171 47.619 0.00 0.00 42.39 3.85
263 264 3.107601 AGGCTAGATGCTTGTAACCTCA 58.892 45.455 0.00 0.00 42.39 3.86
264 265 3.519510 AGGCTAGATGCTTGTAACCTCAA 59.480 43.478 0.00 0.00 42.39 3.02
265 266 3.873952 GGCTAGATGCTTGTAACCTCAAG 59.126 47.826 0.00 2.58 45.09 3.02
266 267 4.508662 GCTAGATGCTTGTAACCTCAAGT 58.491 43.478 0.00 0.00 44.41 3.16
267 268 4.938226 GCTAGATGCTTGTAACCTCAAGTT 59.062 41.667 0.00 0.00 44.41 2.66
268 269 6.106673 GCTAGATGCTTGTAACCTCAAGTTA 58.893 40.000 0.00 0.00 44.41 2.24
269 270 6.594159 GCTAGATGCTTGTAACCTCAAGTTAA 59.406 38.462 0.00 0.00 44.41 2.01
270 271 7.281100 GCTAGATGCTTGTAACCTCAAGTTAAT 59.719 37.037 0.00 1.46 44.41 1.40
271 272 9.167311 CTAGATGCTTGTAACCTCAAGTTAATT 57.833 33.333 7.98 0.00 42.56 1.40
272 273 8.409358 AGATGCTTGTAACCTCAAGTTAATTT 57.591 30.769 7.98 0.00 42.56 1.82
273 274 8.860088 AGATGCTTGTAACCTCAAGTTAATTTT 58.140 29.630 7.98 0.00 42.56 1.82
274 275 9.129209 GATGCTTGTAACCTCAAGTTAATTTTC 57.871 33.333 7.98 0.00 42.56 2.29
275 276 8.232913 TGCTTGTAACCTCAAGTTAATTTTCT 57.767 30.769 7.98 0.00 42.56 2.52
276 277 8.691797 TGCTTGTAACCTCAAGTTAATTTTCTT 58.308 29.630 7.98 0.00 42.56 2.52
280 281 8.789762 TGTAACCTCAAGTTAATTTTCTTAGGC 58.210 33.333 0.00 0.00 42.56 3.93
281 282 6.835819 ACCTCAAGTTAATTTTCTTAGGCC 57.164 37.500 0.00 0.00 0.00 5.19
282 283 6.311735 ACCTCAAGTTAATTTTCTTAGGCCA 58.688 36.000 5.01 0.00 0.00 5.36
283 284 6.780522 ACCTCAAGTTAATTTTCTTAGGCCAA 59.219 34.615 5.01 0.00 0.00 4.52
284 285 7.289084 ACCTCAAGTTAATTTTCTTAGGCCAAA 59.711 33.333 5.01 0.00 0.00 3.28
285 286 7.598869 CCTCAAGTTAATTTTCTTAGGCCAAAC 59.401 37.037 5.01 0.00 0.00 2.93
286 287 8.012957 TCAAGTTAATTTTCTTAGGCCAAACA 57.987 30.769 5.01 0.00 0.00 2.83
287 288 8.646900 TCAAGTTAATTTTCTTAGGCCAAACAT 58.353 29.630 5.01 0.00 0.00 2.71
288 289 9.921637 CAAGTTAATTTTCTTAGGCCAAACATA 57.078 29.630 5.01 0.00 0.00 2.29
291 292 8.817100 GTTAATTTTCTTAGGCCAAACATATGC 58.183 33.333 5.01 0.00 0.00 3.14
292 293 6.796785 ATTTTCTTAGGCCAAACATATGCT 57.203 33.333 5.01 0.00 0.00 3.79
293 294 6.603940 TTTTCTTAGGCCAAACATATGCTT 57.396 33.333 5.01 0.00 0.00 3.91
294 295 6.603940 TTTCTTAGGCCAAACATATGCTTT 57.396 33.333 5.01 0.27 0.00 3.51
295 296 7.710676 TTTCTTAGGCCAAACATATGCTTTA 57.289 32.000 5.01 0.00 0.00 1.85
296 297 7.896383 TTCTTAGGCCAAACATATGCTTTAT 57.104 32.000 5.01 0.00 0.00 1.40
297 298 7.896383 TCTTAGGCCAAACATATGCTTTATT 57.104 32.000 5.01 0.00 0.00 1.40
298 299 7.715657 TCTTAGGCCAAACATATGCTTTATTG 58.284 34.615 5.01 1.31 0.00 1.90
299 300 7.559533 TCTTAGGCCAAACATATGCTTTATTGA 59.440 33.333 5.01 0.00 0.00 2.57
300 301 6.736110 AGGCCAAACATATGCTTTATTGAT 57.264 33.333 5.01 0.00 0.00 2.57
301 302 6.518493 AGGCCAAACATATGCTTTATTGATG 58.482 36.000 5.01 0.00 0.00 3.07
302 303 5.178067 GGCCAAACATATGCTTTATTGATGC 59.822 40.000 1.58 1.77 0.00 3.91
303 304 5.987347 GCCAAACATATGCTTTATTGATGCT 59.013 36.000 1.58 0.00 0.00 3.79
304 305 6.480981 GCCAAACATATGCTTTATTGATGCTT 59.519 34.615 1.58 0.00 0.00 3.91
305 306 7.652909 GCCAAACATATGCTTTATTGATGCTTA 59.347 33.333 1.58 0.00 0.00 3.09
306 307 9.188588 CCAAACATATGCTTTATTGATGCTTAG 57.811 33.333 1.58 0.00 0.00 2.18
307 308 9.955208 CAAACATATGCTTTATTGATGCTTAGA 57.045 29.630 1.58 0.00 0.00 2.10
309 310 9.956720 AACATATGCTTTATTGATGCTTAGAAC 57.043 29.630 1.58 0.00 0.00 3.01
310 311 8.285394 ACATATGCTTTATTGATGCTTAGAACG 58.715 33.333 1.58 0.00 0.00 3.95
311 312 6.925610 ATGCTTTATTGATGCTTAGAACGA 57.074 33.333 0.00 0.00 0.00 3.85
312 313 6.735678 TGCTTTATTGATGCTTAGAACGAA 57.264 33.333 0.00 0.00 0.00 3.85
313 314 7.320443 TGCTTTATTGATGCTTAGAACGAAT 57.680 32.000 0.00 0.00 0.00 3.34
314 315 8.432110 TGCTTTATTGATGCTTAGAACGAATA 57.568 30.769 0.00 0.00 0.00 1.75
315 316 9.056005 TGCTTTATTGATGCTTAGAACGAATAT 57.944 29.630 0.00 0.00 0.00 1.28
316 317 9.884465 GCTTTATTGATGCTTAGAACGAATATT 57.116 29.630 0.00 0.00 0.00 1.28
321 322 7.402811 TGATGCTTAGAACGAATATTTACGG 57.597 36.000 0.00 0.00 0.00 4.02
322 323 7.204604 TGATGCTTAGAACGAATATTTACGGA 58.795 34.615 0.00 0.00 0.00 4.69
323 324 7.870954 TGATGCTTAGAACGAATATTTACGGAT 59.129 33.333 0.00 0.00 0.00 4.18
324 325 9.350357 GATGCTTAGAACGAATATTTACGGATA 57.650 33.333 0.00 0.00 0.00 2.59
325 326 8.511465 TGCTTAGAACGAATATTTACGGATAC 57.489 34.615 0.00 0.00 0.00 2.24
326 327 8.355169 TGCTTAGAACGAATATTTACGGATACT 58.645 33.333 0.00 0.00 0.00 2.12
327 328 8.636843 GCTTAGAACGAATATTTACGGATACTG 58.363 37.037 0.00 0.00 0.00 2.74
328 329 9.674824 CTTAGAACGAATATTTACGGATACTGT 57.325 33.333 0.00 0.00 0.00 3.55
329 330 7.925703 AGAACGAATATTTACGGATACTGTG 57.074 36.000 0.00 0.00 0.00 3.66
330 331 7.709947 AGAACGAATATTTACGGATACTGTGA 58.290 34.615 0.00 0.00 0.00 3.58
331 332 7.646922 AGAACGAATATTTACGGATACTGTGAC 59.353 37.037 0.00 0.00 0.00 3.67
332 333 7.035840 ACGAATATTTACGGATACTGTGACT 57.964 36.000 0.00 0.00 0.00 3.41
333 334 6.916387 ACGAATATTTACGGATACTGTGACTG 59.084 38.462 0.00 0.00 0.00 3.51
334 335 6.362551 CGAATATTTACGGATACTGTGACTGG 59.637 42.308 0.00 0.00 0.00 4.00
335 336 6.971726 ATATTTACGGATACTGTGACTGGA 57.028 37.500 0.00 0.00 0.00 3.86
336 337 5.871396 ATTTACGGATACTGTGACTGGAT 57.129 39.130 0.00 0.00 0.00 3.41
337 338 4.913335 TTACGGATACTGTGACTGGATC 57.087 45.455 6.16 6.16 0.00 3.36
338 339 2.735151 ACGGATACTGTGACTGGATCA 58.265 47.619 15.31 0.00 33.79 2.92
339 340 3.300388 ACGGATACTGTGACTGGATCAT 58.700 45.455 15.31 1.71 40.28 2.45
340 341 4.470602 ACGGATACTGTGACTGGATCATA 58.529 43.478 15.31 0.00 40.28 2.15
341 342 4.278669 ACGGATACTGTGACTGGATCATAC 59.721 45.833 15.31 0.00 40.28 2.39
342 343 4.278419 CGGATACTGTGACTGGATCATACA 59.722 45.833 15.31 0.00 40.28 2.29
343 344 5.221244 CGGATACTGTGACTGGATCATACAA 60.221 44.000 15.31 0.00 40.28 2.41
344 345 6.517362 CGGATACTGTGACTGGATCATACAAT 60.517 42.308 15.31 0.00 40.28 2.71
345 346 7.220030 GGATACTGTGACTGGATCATACAATT 58.780 38.462 15.31 0.00 40.28 2.32
346 347 7.172190 GGATACTGTGACTGGATCATACAATTG 59.828 40.741 15.31 3.24 40.28 2.32
347 348 5.809001 ACTGTGACTGGATCATACAATTGT 58.191 37.500 16.68 16.68 40.28 2.71
348 349 5.877012 ACTGTGACTGGATCATACAATTGTC 59.123 40.000 15.85 0.00 40.28 3.18
349 350 5.185454 TGTGACTGGATCATACAATTGTCC 58.815 41.667 15.85 10.30 40.28 4.02
350 351 4.576463 GTGACTGGATCATACAATTGTCCC 59.424 45.833 15.85 10.10 40.28 4.46
351 352 4.227073 TGACTGGATCATACAATTGTCCCA 59.773 41.667 15.85 13.78 29.99 4.37
352 353 4.785301 ACTGGATCATACAATTGTCCCAG 58.215 43.478 25.58 25.58 40.13 4.45
353 354 3.554934 TGGATCATACAATTGTCCCAGC 58.445 45.455 15.85 2.34 0.00 4.85
354 355 2.887152 GGATCATACAATTGTCCCAGCC 59.113 50.000 15.85 8.16 0.00 4.85
355 356 3.554934 GATCATACAATTGTCCCAGCCA 58.445 45.455 15.85 0.00 0.00 4.75
356 357 3.003394 TCATACAATTGTCCCAGCCAG 57.997 47.619 15.85 0.00 0.00 4.85
357 358 2.575735 TCATACAATTGTCCCAGCCAGA 59.424 45.455 15.85 0.00 0.00 3.86
358 359 2.489938 TACAATTGTCCCAGCCAGAC 57.510 50.000 15.85 0.00 34.72 3.51
359 360 0.478072 ACAATTGTCCCAGCCAGACA 59.522 50.000 4.92 0.00 42.36 3.41
360 361 0.883833 CAATTGTCCCAGCCAGACAC 59.116 55.000 0.00 0.00 43.70 3.67
361 362 0.606401 AATTGTCCCAGCCAGACACG 60.606 55.000 0.86 0.00 43.70 4.49
362 363 1.480212 ATTGTCCCAGCCAGACACGA 61.480 55.000 0.86 0.00 43.70 4.35
363 364 1.480212 TTGTCCCAGCCAGACACGAT 61.480 55.000 0.86 0.00 43.70 3.73
364 365 1.448540 GTCCCAGCCAGACACGATG 60.449 63.158 0.00 0.00 34.27 3.84
365 366 2.124983 CCCAGCCAGACACGATGG 60.125 66.667 0.00 0.00 41.04 3.51
370 371 4.643795 CCAGACACGATGGCCAAT 57.356 55.556 10.96 0.00 0.00 3.16
371 372 3.778619 CCAGACACGATGGCCAATA 57.221 52.632 10.96 0.00 0.00 1.90
372 373 1.299541 CCAGACACGATGGCCAATAC 58.700 55.000 10.96 3.39 0.00 1.89
373 374 1.299541 CAGACACGATGGCCAATACC 58.700 55.000 10.96 0.00 0.00 2.73
374 375 1.134401 CAGACACGATGGCCAATACCT 60.134 52.381 10.96 0.00 0.00 3.08
375 376 2.102420 CAGACACGATGGCCAATACCTA 59.898 50.000 10.96 0.00 0.00 3.08
376 377 2.769663 AGACACGATGGCCAATACCTAA 59.230 45.455 10.96 0.00 0.00 2.69
377 378 3.391296 AGACACGATGGCCAATACCTAAT 59.609 43.478 10.96 0.00 0.00 1.73
378 379 3.476552 ACACGATGGCCAATACCTAATG 58.523 45.455 10.96 2.44 0.00 1.90
379 380 3.135712 ACACGATGGCCAATACCTAATGA 59.864 43.478 10.96 0.00 0.00 2.57
380 381 4.133820 CACGATGGCCAATACCTAATGAA 58.866 43.478 10.96 0.00 0.00 2.57
381 382 4.024048 CACGATGGCCAATACCTAATGAAC 60.024 45.833 10.96 0.00 0.00 3.18
382 383 4.133820 CGATGGCCAATACCTAATGAACA 58.866 43.478 10.96 0.00 0.00 3.18
383 384 4.578516 CGATGGCCAATACCTAATGAACAA 59.421 41.667 10.96 0.00 0.00 2.83
384 385 5.277974 CGATGGCCAATACCTAATGAACAAG 60.278 44.000 10.96 0.00 0.00 3.16
385 386 3.699038 TGGCCAATACCTAATGAACAAGC 59.301 43.478 0.61 0.00 0.00 4.01
386 387 3.954258 GGCCAATACCTAATGAACAAGCT 59.046 43.478 0.00 0.00 0.00 3.74
387 388 5.130350 GGCCAATACCTAATGAACAAGCTA 58.870 41.667 0.00 0.00 0.00 3.32
388 389 5.239525 GGCCAATACCTAATGAACAAGCTAG 59.760 44.000 0.00 0.00 0.00 3.42
389 390 5.239525 GCCAATACCTAATGAACAAGCTAGG 59.760 44.000 0.00 0.00 37.52 3.02
390 391 5.239525 CCAATACCTAATGAACAAGCTAGGC 59.760 44.000 0.00 0.00 35.30 3.93
391 392 2.906354 ACCTAATGAACAAGCTAGGCG 58.094 47.619 0.00 0.00 35.30 5.52
392 393 2.500098 ACCTAATGAACAAGCTAGGCGA 59.500 45.455 0.00 0.00 35.30 5.54
393 394 3.134804 ACCTAATGAACAAGCTAGGCGAT 59.865 43.478 0.00 0.00 35.30 4.58
394 395 3.496130 CCTAATGAACAAGCTAGGCGATG 59.504 47.826 0.00 0.00 0.00 3.84
395 396 1.303309 ATGAACAAGCTAGGCGATGC 58.697 50.000 0.00 0.00 0.00 3.91
396 397 1.083806 TGAACAAGCTAGGCGATGCG 61.084 55.000 0.00 0.00 0.00 4.73
409 410 2.842208 CGATGCGCCTCCAAATTAAA 57.158 45.000 4.18 0.00 0.00 1.52
410 411 3.143807 CGATGCGCCTCCAAATTAAAA 57.856 42.857 4.18 0.00 0.00 1.52
411 412 3.705604 CGATGCGCCTCCAAATTAAAAT 58.294 40.909 4.18 0.00 0.00 1.82
412 413 4.111916 CGATGCGCCTCCAAATTAAAATT 58.888 39.130 4.18 0.00 0.00 1.82
413 414 4.207019 CGATGCGCCTCCAAATTAAAATTC 59.793 41.667 4.18 0.00 0.00 2.17
414 415 4.799564 TGCGCCTCCAAATTAAAATTCT 57.200 36.364 4.18 0.00 0.00 2.40
415 416 5.146010 TGCGCCTCCAAATTAAAATTCTT 57.854 34.783 4.18 0.00 0.00 2.52
416 417 5.546526 TGCGCCTCCAAATTAAAATTCTTT 58.453 33.333 4.18 0.00 0.00 2.52
417 418 5.994668 TGCGCCTCCAAATTAAAATTCTTTT 59.005 32.000 4.18 0.00 36.67 2.27
418 419 6.484977 TGCGCCTCCAAATTAAAATTCTTTTT 59.515 30.769 4.18 0.00 38.56 1.94
443 444 8.751302 TTTTAGCGTCTCCAAATTAAATTTCC 57.249 30.769 0.00 0.00 0.00 3.13
444 445 7.696992 TTAGCGTCTCCAAATTAAATTTCCT 57.303 32.000 0.00 0.00 0.00 3.36
445 446 8.795842 TTAGCGTCTCCAAATTAAATTTCCTA 57.204 30.769 0.00 0.00 0.00 2.94
446 447 7.085052 AGCGTCTCCAAATTAAATTTCCTAC 57.915 36.000 0.00 0.00 0.00 3.18
447 448 6.095021 AGCGTCTCCAAATTAAATTTCCTACC 59.905 38.462 0.00 0.00 0.00 3.18
448 449 6.095021 GCGTCTCCAAATTAAATTTCCTACCT 59.905 38.462 0.00 0.00 0.00 3.08
449 450 7.472543 CGTCTCCAAATTAAATTTCCTACCTG 58.527 38.462 0.00 0.00 0.00 4.00
450 451 7.415206 CGTCTCCAAATTAAATTTCCTACCTGG 60.415 40.741 0.00 0.00 37.10 4.45
451 452 7.614192 GTCTCCAAATTAAATTTCCTACCTGGA 59.386 37.037 0.00 0.67 44.51 3.86
478 479 4.765813 TTATGTAGTTGCTCCTTACCCC 57.234 45.455 0.00 0.00 0.00 4.95
479 480 1.282382 TGTAGTTGCTCCTTACCCCC 58.718 55.000 0.00 0.00 0.00 5.40
510 511 4.336280 GGAGCCTAGATGTTCCAAAAAGT 58.664 43.478 0.00 0.00 0.00 2.66
513 514 4.079253 GCCTAGATGTTCCAAAAAGTCCA 58.921 43.478 0.00 0.00 0.00 4.02
520 521 6.721208 AGATGTTCCAAAAAGTCCATGTATGT 59.279 34.615 0.00 0.00 0.00 2.29
574 575 4.454161 TGATCACACGTATTTTTCCACCAG 59.546 41.667 0.00 0.00 0.00 4.00
579 580 1.615919 CGTATTTTTCCACCAGGGCCT 60.616 52.381 0.00 0.00 36.21 5.19
612 613 2.696759 CCCGTAAAGCCCAAAGCCG 61.697 63.158 0.00 0.00 45.47 5.52
613 614 2.178273 CGTAAAGCCCAAAGCCGC 59.822 61.111 0.00 0.00 45.47 6.53
614 615 2.178273 GTAAAGCCCAAAGCCGCG 59.822 61.111 0.00 0.00 45.47 6.46
1229 1234 4.908487 CCCTAGCCCCTACCGCGA 62.908 72.222 8.23 0.00 0.00 5.87
1230 1235 3.603671 CCTAGCCCCTACCGCGAC 61.604 72.222 8.23 0.00 0.00 5.19
1231 1236 3.603671 CTAGCCCCTACCGCGACC 61.604 72.222 8.23 0.00 0.00 4.79
1260 1265 4.426313 CGGTCCCCAAGCCCCTTC 62.426 72.222 0.00 0.00 0.00 3.46
1261 1266 4.062032 GGTCCCCAAGCCCCTTCC 62.062 72.222 0.00 0.00 0.00 3.46
1262 1267 4.426313 GTCCCCAAGCCCCTTCCG 62.426 72.222 0.00 0.00 0.00 4.30
1569 1574 0.106819 AGGCCGACGAGTACCAGTAT 60.107 55.000 0.00 0.00 0.00 2.12
1614 1622 0.902531 AGGAATCGCCGAAGAAGGAA 59.097 50.000 0.00 0.00 43.43 3.36
1796 1807 1.364626 CGCCACAGGAAGTCTGATGC 61.365 60.000 0.00 1.67 46.18 3.91
2051 2062 3.406764 GCAAGAGCTCAAGGAAGAAGAA 58.593 45.455 17.77 0.00 37.91 2.52
2262 2273 4.286297 TGGTCATATTAGCTATGGTGGC 57.714 45.455 0.00 0.00 38.23 5.01
2280 2291 1.080230 CGCACTGAGACCTGGTGAG 60.080 63.158 2.82 0.00 33.32 3.51
2370 2381 5.642919 GTCTGCAGATGAGATTCAGAAGTTT 59.357 40.000 21.47 0.00 35.81 2.66
2400 2411 2.505819 GGGGTATGTGATGAGTGGAAGT 59.494 50.000 0.00 0.00 0.00 3.01
2649 2660 3.457610 ACAAAGAAATGGTTGCCACTG 57.542 42.857 0.00 0.00 35.80 3.66
2698 2718 4.177026 ACTAGTGATGTCGAGTTTGCATC 58.823 43.478 0.00 6.12 39.37 3.91
2985 3022 0.313672 TGGCACTTGCGGATTTCAAC 59.686 50.000 0.00 0.00 43.26 3.18
3007 3044 9.140286 TCAACTAAATCTTCACTATCTGAAACG 57.860 33.333 0.00 0.00 38.47 3.60
3059 3099 7.496346 TTGTTTGTCCTAAGATCATAGAGGT 57.504 36.000 6.55 0.00 0.00 3.85
3062 3102 8.642432 TGTTTGTCCTAAGATCATAGAGGTATG 58.358 37.037 6.55 0.00 37.92 2.39
3068 3108 9.547279 TCCTAAGATCATAGAGGTATGCATTTA 57.453 33.333 3.54 0.00 36.68 1.40
3069 3109 9.593134 CCTAAGATCATAGAGGTATGCATTTAC 57.407 37.037 3.54 0.00 36.68 2.01
3072 3112 8.427902 AGATCATAGAGGTATGCATTTACTCA 57.572 34.615 20.18 11.01 36.68 3.41
3080 3120 8.803235 AGAGGTATGCATTTACTCATTATACGA 58.197 33.333 20.18 0.00 0.00 3.43
3081 3121 9.419297 GAGGTATGCATTTACTCATTATACGAA 57.581 33.333 3.54 0.00 0.00 3.85
3138 3178 5.406477 GGATCCTTGTTTTGCTGAATTTCAC 59.594 40.000 3.84 0.00 0.00 3.18
3140 3180 4.111916 CCTTGTTTTGCTGAATTTCACGT 58.888 39.130 0.00 0.00 0.00 4.49
3142 3182 3.443037 TGTTTTGCTGAATTTCACGTGG 58.557 40.909 17.00 0.00 0.00 4.94
3143 3183 2.791383 TTTGCTGAATTTCACGTGGG 57.209 45.000 17.00 0.00 0.00 4.61
3144 3184 0.313672 TTGCTGAATTTCACGTGGGC 59.686 50.000 17.00 9.25 0.00 5.36
3146 3186 0.598065 GCTGAATTTCACGTGGGCTT 59.402 50.000 17.00 6.41 0.00 4.35
3182 3223 5.787380 TGATACACCTATGAGCAGCAATAG 58.213 41.667 0.00 1.60 0.00 1.73
3186 3227 4.878397 ACACCTATGAGCAGCAATAGTTTC 59.122 41.667 12.03 0.00 0.00 2.78
3189 3230 5.762218 ACCTATGAGCAGCAATAGTTTCATC 59.238 40.000 12.03 0.00 0.00 2.92
3190 3231 5.180868 CCTATGAGCAGCAATAGTTTCATCC 59.819 44.000 12.03 0.00 0.00 3.51
3191 3232 3.954200 TGAGCAGCAATAGTTTCATCCA 58.046 40.909 0.00 0.00 0.00 3.41
3209 3252 7.230849 TCATCCATTAATTCATGGTTATGGC 57.769 36.000 16.49 0.00 43.94 4.40
3210 3253 5.703978 TCCATTAATTCATGGTTATGGCG 57.296 39.130 16.49 0.00 43.94 5.69
3217 3260 1.202758 TCATGGTTATGGCGATCACCC 60.203 52.381 9.31 0.00 34.97 4.61
3220 3263 0.463116 GGTTATGGCGATCACCCGTT 60.463 55.000 0.76 0.00 0.00 4.44
3226 3269 1.004595 GGCGATCACCCGTTAAGAAC 58.995 55.000 0.00 0.00 0.00 3.01
3227 3270 1.405121 GGCGATCACCCGTTAAGAACT 60.405 52.381 0.00 0.00 0.00 3.01
3228 3271 1.659098 GCGATCACCCGTTAAGAACTG 59.341 52.381 0.00 0.00 0.00 3.16
3229 3272 1.659098 CGATCACCCGTTAAGAACTGC 59.341 52.381 0.00 0.00 0.00 4.40
3230 3273 2.007608 GATCACCCGTTAAGAACTGCC 58.992 52.381 0.00 0.00 0.00 4.85
3231 3274 0.320073 TCACCCGTTAAGAACTGCCG 60.320 55.000 0.00 0.00 0.00 5.69
3232 3275 0.601841 CACCCGTTAAGAACTGCCGT 60.602 55.000 0.00 0.00 0.00 5.68
3233 3276 0.320160 ACCCGTTAAGAACTGCCGTC 60.320 55.000 0.00 0.00 0.00 4.79
3234 3277 1.017701 CCCGTTAAGAACTGCCGTCC 61.018 60.000 0.00 0.00 0.00 4.79
3235 3278 1.017701 CCGTTAAGAACTGCCGTCCC 61.018 60.000 0.00 0.00 0.00 4.46
3236 3279 0.320073 CGTTAAGAACTGCCGTCCCA 60.320 55.000 0.00 0.00 0.00 4.37
3237 3280 1.674817 CGTTAAGAACTGCCGTCCCAT 60.675 52.381 0.00 0.00 0.00 4.00
3238 3281 1.737793 GTTAAGAACTGCCGTCCCATG 59.262 52.381 0.00 0.00 0.00 3.66
3239 3282 1.271856 TAAGAACTGCCGTCCCATGA 58.728 50.000 0.00 0.00 0.00 3.07
3240 3283 0.620556 AAGAACTGCCGTCCCATGAT 59.379 50.000 0.00 0.00 0.00 2.45
3241 3284 0.179000 AGAACTGCCGTCCCATGATC 59.821 55.000 0.00 0.00 0.00 2.92
3242 3285 0.107703 GAACTGCCGTCCCATGATCA 60.108 55.000 0.00 0.00 0.00 2.92
3243 3286 0.107508 AACTGCCGTCCCATGATCAG 60.108 55.000 0.09 0.00 0.00 2.90
3244 3287 1.267574 ACTGCCGTCCCATGATCAGT 61.268 55.000 0.09 0.00 0.00 3.41
3245 3288 0.107508 CTGCCGTCCCATGATCAGTT 60.108 55.000 0.09 0.00 0.00 3.16
3246 3289 0.107703 TGCCGTCCCATGATCAGTTC 60.108 55.000 0.09 0.00 0.00 3.01
3247 3290 0.179000 GCCGTCCCATGATCAGTTCT 59.821 55.000 0.09 0.00 0.00 3.01
3248 3291 1.808133 GCCGTCCCATGATCAGTTCTC 60.808 57.143 0.09 0.00 0.00 2.87
3249 3292 1.759445 CCGTCCCATGATCAGTTCTCT 59.241 52.381 0.09 0.00 0.00 3.10
3250 3293 2.169352 CCGTCCCATGATCAGTTCTCTT 59.831 50.000 0.09 0.00 0.00 2.85
3251 3294 3.193263 CGTCCCATGATCAGTTCTCTTG 58.807 50.000 0.09 0.00 0.00 3.02
3252 3295 3.368843 CGTCCCATGATCAGTTCTCTTGT 60.369 47.826 0.09 0.00 0.00 3.16
3253 3296 3.937706 GTCCCATGATCAGTTCTCTTGTG 59.062 47.826 0.09 0.00 0.00 3.33
3254 3297 3.840078 TCCCATGATCAGTTCTCTTGTGA 59.160 43.478 0.09 0.00 0.00 3.58
3255 3298 4.081254 TCCCATGATCAGTTCTCTTGTGAG 60.081 45.833 0.09 0.00 41.51 3.51
3256 3299 4.323333 CCCATGATCAGTTCTCTTGTGAGT 60.323 45.833 0.09 0.00 40.98 3.41
3257 3300 5.105187 CCCATGATCAGTTCTCTTGTGAGTA 60.105 44.000 0.09 0.00 40.98 2.59
3258 3301 6.401394 CCATGATCAGTTCTCTTGTGAGTAA 58.599 40.000 0.09 0.00 40.98 2.24
3259 3302 6.534436 CCATGATCAGTTCTCTTGTGAGTAAG 59.466 42.308 0.09 0.00 40.98 2.34
3260 3303 5.473931 TGATCAGTTCTCTTGTGAGTAAGC 58.526 41.667 0.00 0.00 40.98 3.09
3261 3304 5.244851 TGATCAGTTCTCTTGTGAGTAAGCT 59.755 40.000 0.00 0.00 40.98 3.74
3262 3305 5.127693 TCAGTTCTCTTGTGAGTAAGCTC 57.872 43.478 0.00 0.00 40.98 4.09
3290 3333 5.951747 TGAATGTTAGATTAAAGCTGCCCTT 59.048 36.000 0.00 0.00 34.51 3.95
3300 3343 0.183014 AGCTGCCCTTCCATGATCTG 59.817 55.000 0.00 0.00 0.00 2.90
3309 3352 4.324099 CCCTTCCATGATCTGTTCTCTTGT 60.324 45.833 0.00 0.00 0.00 3.16
3312 3355 5.082251 TCCATGATCTGTTCTCTTGTGAG 57.918 43.478 0.00 0.00 41.51 3.51
3343 3386 5.947228 AATGAATGTATTAGGGTGATGCG 57.053 39.130 0.00 0.00 0.00 4.73
3347 3390 3.452755 TGTATTAGGGTGATGCGTGAG 57.547 47.619 0.00 0.00 0.00 3.51
3355 3398 2.627945 GGTGATGCGTGAGACCATTTA 58.372 47.619 0.00 0.00 0.00 1.40
3411 3455 9.778741 TGGGATGTTAGATGTCATTATTAACTC 57.221 33.333 12.86 9.49 0.00 3.01
3432 3734 7.317722 ACTCTACATTCTAAACTGTCCCTTT 57.682 36.000 0.00 0.00 0.00 3.11
3442 3744 3.199880 ACTGTCCCTTTGACTTCACTG 57.800 47.619 0.00 0.00 44.75 3.66
3447 3749 4.536090 TGTCCCTTTGACTTCACTGGATAT 59.464 41.667 0.00 0.00 44.75 1.63
3454 3756 8.186821 CCTTTGACTTCACTGGATATTTGATTC 58.813 37.037 0.00 0.00 0.00 2.52
3493 3795 6.540189 TCATCTAGCTTTAAGTTGGCAATCTC 59.460 38.462 1.92 0.00 0.00 2.75
3494 3796 5.804639 TCTAGCTTTAAGTTGGCAATCTCA 58.195 37.500 1.92 0.00 0.00 3.27
3496 3798 5.789643 AGCTTTAAGTTGGCAATCTCAAA 57.210 34.783 1.92 0.94 0.00 2.69
3501 3803 8.028938 GCTTTAAGTTGGCAATCTCAAATTAGA 58.971 33.333 1.92 0.00 36.49 2.10
3502 3804 9.912634 CTTTAAGTTGGCAATCTCAAATTAGAA 57.087 29.630 1.92 0.00 36.49 2.10
3506 3808 8.814038 AGTTGGCAATCTCAAATTAGAATACT 57.186 30.769 1.92 0.00 0.00 2.12
3507 3809 8.680903 AGTTGGCAATCTCAAATTAGAATACTG 58.319 33.333 1.92 0.00 0.00 2.74
3508 3810 8.462016 GTTGGCAATCTCAAATTAGAATACTGT 58.538 33.333 1.92 0.00 0.00 3.55
3509 3811 9.679661 TTGGCAATCTCAAATTAGAATACTGTA 57.320 29.630 0.00 0.00 0.00 2.74
3510 3812 9.679661 TGGCAATCTCAAATTAGAATACTGTAA 57.320 29.630 0.00 0.00 0.00 2.41
3526 3828 4.563061 ACTGTAAACCGGATGAAGTACAC 58.437 43.478 9.46 0.00 0.00 2.90
3528 3830 4.813027 TGTAAACCGGATGAAGTACACTC 58.187 43.478 9.46 0.00 0.00 3.51
3559 3861 6.648879 ACATAACTTTCAAAGGCTGCTTAA 57.351 33.333 1.31 0.00 0.00 1.85
3568 3870 7.524717 TTCAAAGGCTGCTTAAGAACTTATT 57.475 32.000 6.67 0.00 0.00 1.40
3570 3872 8.630054 TCAAAGGCTGCTTAAGAACTTATTTA 57.370 30.769 6.67 0.00 0.00 1.40
3584 3889 9.907229 AAGAACTTATTTATAAACAGGCTAGCT 57.093 29.630 15.72 0.00 0.00 3.32
3586 3891 9.937175 GAACTTATTTATAAACAGGCTAGCTTG 57.063 33.333 23.99 23.99 0.00 4.01
3597 3902 3.620821 CAGGCTAGCTTGCTTAAGAACTC 59.379 47.826 19.45 0.00 0.00 3.01
3598 3903 3.261897 AGGCTAGCTTGCTTAAGAACTCA 59.738 43.478 19.45 0.00 0.00 3.41
3599 3904 4.080638 AGGCTAGCTTGCTTAAGAACTCAT 60.081 41.667 19.45 0.00 0.00 2.90
3600 3905 4.272261 GGCTAGCTTGCTTAAGAACTCATC 59.728 45.833 19.45 0.00 0.00 2.92
3601 3906 5.115480 GCTAGCTTGCTTAAGAACTCATCT 58.885 41.667 13.17 0.00 41.32 2.90
3602 3907 6.276847 GCTAGCTTGCTTAAGAACTCATCTA 58.723 40.000 13.17 0.00 37.42 1.98
3603 3908 6.928492 GCTAGCTTGCTTAAGAACTCATCTAT 59.072 38.462 13.17 0.00 37.42 1.98
3604 3909 7.095691 GCTAGCTTGCTTAAGAACTCATCTATG 60.096 40.741 13.17 0.00 37.42 2.23
3605 3910 6.054295 AGCTTGCTTAAGAACTCATCTATGG 58.946 40.000 6.67 0.00 37.42 2.74
3606 3911 6.051717 GCTTGCTTAAGAACTCATCTATGGA 58.948 40.000 6.67 0.00 37.42 3.41
3607 3912 6.018343 GCTTGCTTAAGAACTCATCTATGGAC 60.018 42.308 6.67 0.00 37.42 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.476291 GGACCTTCACGGGTGACTTTT 60.476 52.381 0.04 0.00 40.06 2.27
1 2 0.108019 GGACCTTCACGGGTGACTTT 59.892 55.000 0.04 0.00 40.06 2.66
2 3 1.752833 GGACCTTCACGGGTGACTT 59.247 57.895 0.04 0.00 40.06 3.01
3 4 2.214920 GGGACCTTCACGGGTGACT 61.215 63.158 0.04 0.00 40.06 3.41
4 5 2.346365 GGGACCTTCACGGGTGAC 59.654 66.667 0.04 0.00 40.06 3.67
5 6 3.307906 CGGGACCTTCACGGGTGA 61.308 66.667 0.00 0.00 40.12 4.02
8 9 4.323477 TTGCGGGACCTTCACGGG 62.323 66.667 0.00 0.00 44.81 5.28
9 10 2.742372 CTTGCGGGACCTTCACGG 60.742 66.667 0.00 0.00 44.81 4.94
20 21 0.604511 AACGAGTTTACCCCTTGCGG 60.605 55.000 0.00 0.00 0.00 5.69
21 22 1.997606 CTAACGAGTTTACCCCTTGCG 59.002 52.381 0.00 0.00 0.00 4.85
22 23 3.049708 ACTAACGAGTTTACCCCTTGC 57.950 47.619 0.00 0.00 28.61 4.01
44 45 4.383226 GGGTTGGTCAAGTTTGGCTAAAAA 60.383 41.667 0.00 0.00 35.04 1.94
45 46 3.133183 GGGTTGGTCAAGTTTGGCTAAAA 59.867 43.478 0.00 0.00 35.04 1.52
46 47 2.696187 GGGTTGGTCAAGTTTGGCTAAA 59.304 45.455 0.00 0.00 35.04 1.85
47 48 2.312390 GGGTTGGTCAAGTTTGGCTAA 58.688 47.619 0.00 0.00 30.61 3.09
48 49 1.215673 TGGGTTGGTCAAGTTTGGCTA 59.784 47.619 0.00 0.00 32.28 3.93
49 50 0.032615 TGGGTTGGTCAAGTTTGGCT 60.033 50.000 0.00 0.00 32.28 4.75
50 51 1.047801 ATGGGTTGGTCAAGTTTGGC 58.952 50.000 0.00 0.00 0.00 4.52
51 52 3.258123 CCTTATGGGTTGGTCAAGTTTGG 59.742 47.826 0.00 0.00 0.00 3.28
52 53 4.519540 CCTTATGGGTTGGTCAAGTTTG 57.480 45.455 0.00 0.00 0.00 2.93
65 66 3.864789 AGCATGGTCTTACCTTATGGG 57.135 47.619 0.00 0.00 39.58 4.00
66 67 4.757149 GCTAAGCATGGTCTTACCTTATGG 59.243 45.833 0.00 0.00 39.58 2.74
67 68 4.449068 CGCTAAGCATGGTCTTACCTTATG 59.551 45.833 0.00 0.00 39.58 1.90
68 69 4.101119 ACGCTAAGCATGGTCTTACCTTAT 59.899 41.667 0.00 0.00 39.58 1.73
69 70 3.449737 ACGCTAAGCATGGTCTTACCTTA 59.550 43.478 0.00 0.00 39.58 2.69
70 71 2.236395 ACGCTAAGCATGGTCTTACCTT 59.764 45.455 0.00 0.00 39.58 3.50
71 72 1.831736 ACGCTAAGCATGGTCTTACCT 59.168 47.619 0.00 0.00 39.58 3.08
72 73 2.311124 ACGCTAAGCATGGTCTTACC 57.689 50.000 0.00 0.00 39.22 2.85
73 74 3.554731 GGTTACGCTAAGCATGGTCTTAC 59.445 47.826 0.00 0.00 36.26 2.34
74 75 3.449737 AGGTTACGCTAAGCATGGTCTTA 59.550 43.478 0.00 0.00 38.57 2.10
75 76 2.236395 AGGTTACGCTAAGCATGGTCTT 59.764 45.455 0.00 0.00 38.57 3.01
76 77 1.831736 AGGTTACGCTAAGCATGGTCT 59.168 47.619 0.00 0.00 38.57 3.85
77 78 2.311124 AGGTTACGCTAAGCATGGTC 57.689 50.000 0.00 0.00 38.57 4.02
78 79 2.027561 TCAAGGTTACGCTAAGCATGGT 60.028 45.455 0.00 0.00 38.57 3.55
79 80 2.609459 CTCAAGGTTACGCTAAGCATGG 59.391 50.000 0.00 0.00 38.57 3.66
80 81 3.262420 ACTCAAGGTTACGCTAAGCATG 58.738 45.455 8.80 0.00 38.57 4.06
81 82 3.611766 ACTCAAGGTTACGCTAAGCAT 57.388 42.857 8.80 0.00 38.57 3.79
82 83 3.396260 AACTCAAGGTTACGCTAAGCA 57.604 42.857 8.80 0.00 38.57 3.91
83 84 4.744136 AAAACTCAAGGTTACGCTAAGC 57.256 40.909 0.00 0.00 37.12 3.09
113 114 7.582667 AGGTCTAGCAAGCTTTTCTTAAAAA 57.417 32.000 0.00 0.00 32.74 1.94
114 115 7.582667 AAGGTCTAGCAAGCTTTTCTTAAAA 57.417 32.000 0.00 0.00 33.33 1.52
115 116 7.582667 AAAGGTCTAGCAAGCTTTTCTTAAA 57.417 32.000 0.00 0.00 42.63 1.52
116 117 8.863872 ATAAAGGTCTAGCAAGCTTTTCTTAA 57.136 30.769 12.27 0.00 42.63 1.85
117 118 8.730680 CAATAAAGGTCTAGCAAGCTTTTCTTA 58.269 33.333 12.27 0.00 42.63 2.10
118 119 7.448469 TCAATAAAGGTCTAGCAAGCTTTTCTT 59.552 33.333 12.27 6.10 42.63 2.52
119 120 6.942576 TCAATAAAGGTCTAGCAAGCTTTTCT 59.057 34.615 12.27 0.00 42.63 2.52
120 121 7.145932 TCAATAAAGGTCTAGCAAGCTTTTC 57.854 36.000 12.27 0.00 42.63 2.29
121 122 7.709149 ATCAATAAAGGTCTAGCAAGCTTTT 57.291 32.000 12.27 0.00 42.63 2.27
122 123 7.709149 AATCAATAAAGGTCTAGCAAGCTTT 57.291 32.000 11.85 11.85 45.90 3.51
123 124 7.012799 GCTAATCAATAAAGGTCTAGCAAGCTT 59.987 37.037 0.00 0.00 38.57 3.74
124 125 6.484977 GCTAATCAATAAAGGTCTAGCAAGCT 59.515 38.462 0.00 0.00 32.44 3.74
125 126 6.484977 AGCTAATCAATAAAGGTCTAGCAAGC 59.515 38.462 0.00 0.00 34.17 4.01
126 127 9.547753 TTAGCTAATCAATAAAGGTCTAGCAAG 57.452 33.333 0.86 0.00 34.17 4.01
127 128 9.899661 TTTAGCTAATCAATAAAGGTCTAGCAA 57.100 29.630 7.08 0.00 34.17 3.91
128 129 9.899661 TTTTAGCTAATCAATAAAGGTCTAGCA 57.100 29.630 7.08 0.00 34.17 3.49
135 136 8.958043 GCGAACATTTTAGCTAATCAATAAAGG 58.042 33.333 7.08 1.86 31.08 3.11
136 137 9.502145 TGCGAACATTTTAGCTAATCAATAAAG 57.498 29.630 7.08 0.00 34.62 1.85
137 138 9.502145 CTGCGAACATTTTAGCTAATCAATAAA 57.498 29.630 7.08 0.00 34.62 1.40
138 139 8.128582 CCTGCGAACATTTTAGCTAATCAATAA 58.871 33.333 7.08 0.00 34.62 1.40
139 140 7.255104 CCCTGCGAACATTTTAGCTAATCAATA 60.255 37.037 7.08 0.00 34.62 1.90
140 141 6.460123 CCCTGCGAACATTTTAGCTAATCAAT 60.460 38.462 7.08 2.23 34.62 2.57
141 142 5.163663 CCCTGCGAACATTTTAGCTAATCAA 60.164 40.000 7.08 0.00 34.62 2.57
142 143 4.335315 CCCTGCGAACATTTTAGCTAATCA 59.665 41.667 7.08 0.00 34.62 2.57
143 144 4.574828 TCCCTGCGAACATTTTAGCTAATC 59.425 41.667 7.08 0.37 34.62 1.75
144 145 4.523083 TCCCTGCGAACATTTTAGCTAAT 58.477 39.130 7.08 0.00 34.62 1.73
145 146 3.945346 TCCCTGCGAACATTTTAGCTAA 58.055 40.909 0.86 0.86 34.62 3.09
146 147 3.620427 TCCCTGCGAACATTTTAGCTA 57.380 42.857 0.00 0.00 34.62 3.32
147 148 2.489938 TCCCTGCGAACATTTTAGCT 57.510 45.000 0.00 0.00 34.62 3.32
148 149 3.782889 AATCCCTGCGAACATTTTAGC 57.217 42.857 0.00 0.00 34.15 3.09
149 150 9.398170 CAATTATAATCCCTGCGAACATTTTAG 57.602 33.333 0.00 0.00 0.00 1.85
150 151 8.356657 CCAATTATAATCCCTGCGAACATTTTA 58.643 33.333 0.00 0.00 0.00 1.52
151 152 7.209475 CCAATTATAATCCCTGCGAACATTTT 58.791 34.615 0.00 0.00 0.00 1.82
152 153 6.239289 CCCAATTATAATCCCTGCGAACATTT 60.239 38.462 0.00 0.00 0.00 2.32
153 154 5.243730 CCCAATTATAATCCCTGCGAACATT 59.756 40.000 0.00 0.00 0.00 2.71
154 155 4.766891 CCCAATTATAATCCCTGCGAACAT 59.233 41.667 0.00 0.00 0.00 2.71
155 156 4.141287 CCCAATTATAATCCCTGCGAACA 58.859 43.478 0.00 0.00 0.00 3.18
156 157 4.142038 ACCCAATTATAATCCCTGCGAAC 58.858 43.478 0.00 0.00 0.00 3.95
157 158 4.141367 TGACCCAATTATAATCCCTGCGAA 60.141 41.667 0.00 0.00 0.00 4.70
158 159 3.392947 TGACCCAATTATAATCCCTGCGA 59.607 43.478 0.00 0.00 0.00 5.10
159 160 3.750371 TGACCCAATTATAATCCCTGCG 58.250 45.455 0.00 0.00 0.00 5.18
160 161 4.082026 GCATGACCCAATTATAATCCCTGC 60.082 45.833 0.00 0.00 0.00 4.85
161 162 4.156556 CGCATGACCCAATTATAATCCCTG 59.843 45.833 0.00 0.00 0.00 4.45
162 163 4.335416 CGCATGACCCAATTATAATCCCT 58.665 43.478 0.00 0.00 0.00 4.20
163 164 3.443681 CCGCATGACCCAATTATAATCCC 59.556 47.826 0.00 0.00 0.00 3.85
164 165 4.331968 TCCGCATGACCCAATTATAATCC 58.668 43.478 0.00 0.00 0.00 3.01
165 166 5.003804 ACTCCGCATGACCCAATTATAATC 58.996 41.667 0.00 0.00 0.00 1.75
166 167 4.985538 ACTCCGCATGACCCAATTATAAT 58.014 39.130 0.00 0.00 0.00 1.28
167 168 4.431416 ACTCCGCATGACCCAATTATAA 57.569 40.909 0.00 0.00 0.00 0.98
168 169 4.591498 AGTACTCCGCATGACCCAATTATA 59.409 41.667 0.00 0.00 0.00 0.98
169 170 3.391296 AGTACTCCGCATGACCCAATTAT 59.609 43.478 0.00 0.00 0.00 1.28
170 171 2.769663 AGTACTCCGCATGACCCAATTA 59.230 45.455 0.00 0.00 0.00 1.40
171 172 1.559682 AGTACTCCGCATGACCCAATT 59.440 47.619 0.00 0.00 0.00 2.32
172 173 1.139058 GAGTACTCCGCATGACCCAAT 59.861 52.381 12.13 0.00 0.00 3.16
173 174 0.535335 GAGTACTCCGCATGACCCAA 59.465 55.000 12.13 0.00 0.00 4.12
174 175 0.613572 TGAGTACTCCGCATGACCCA 60.614 55.000 20.11 0.00 0.00 4.51
175 176 0.535335 TTGAGTACTCCGCATGACCC 59.465 55.000 20.11 0.00 0.00 4.46
176 177 1.641577 GTTGAGTACTCCGCATGACC 58.358 55.000 20.11 0.00 0.00 4.02
177 178 1.067142 TGGTTGAGTACTCCGCATGAC 60.067 52.381 20.11 8.73 0.00 3.06
178 179 1.067142 GTGGTTGAGTACTCCGCATGA 60.067 52.381 20.11 0.00 0.00 3.07
179 180 1.359848 GTGGTTGAGTACTCCGCATG 58.640 55.000 20.11 0.00 0.00 4.06
180 181 0.108804 CGTGGTTGAGTACTCCGCAT 60.109 55.000 20.11 0.00 0.00 4.73
181 182 1.287815 CGTGGTTGAGTACTCCGCA 59.712 57.895 20.11 0.00 0.00 5.69
182 183 1.445582 CCGTGGTTGAGTACTCCGC 60.446 63.158 20.11 11.08 0.00 5.54
183 184 0.815734 ATCCGTGGTTGAGTACTCCG 59.184 55.000 20.11 14.72 0.00 4.63
184 185 1.739371 GCATCCGTGGTTGAGTACTCC 60.739 57.143 20.11 6.28 0.00 3.85
185 186 1.204941 AGCATCCGTGGTTGAGTACTC 59.795 52.381 16.32 16.32 30.39 2.59
186 187 1.267121 AGCATCCGTGGTTGAGTACT 58.733 50.000 0.00 0.00 30.39 2.73
187 188 2.000447 GAAGCATCCGTGGTTGAGTAC 59.000 52.381 1.13 0.00 45.43 2.73
188 189 1.066430 GGAAGCATCCGTGGTTGAGTA 60.066 52.381 0.00 0.00 45.43 2.59
189 190 0.321653 GGAAGCATCCGTGGTTGAGT 60.322 55.000 0.00 0.00 45.43 3.41
190 191 2.471255 GGAAGCATCCGTGGTTGAG 58.529 57.895 0.00 0.00 45.43 3.02
191 192 4.713946 GGAAGCATCCGTGGTTGA 57.286 55.556 0.00 0.00 45.43 3.18
199 200 0.103937 CTCTCTGTCGGGAAGCATCC 59.896 60.000 0.00 0.00 45.77 3.51
200 201 1.066908 CTCTCTCTGTCGGGAAGCATC 59.933 57.143 0.00 0.00 0.00 3.91
201 202 1.110442 CTCTCTCTGTCGGGAAGCAT 58.890 55.000 0.00 0.00 0.00 3.79
202 203 0.038310 TCTCTCTCTGTCGGGAAGCA 59.962 55.000 0.00 0.00 0.00 3.91
203 204 1.178276 TTCTCTCTCTGTCGGGAAGC 58.822 55.000 0.00 0.00 0.00 3.86
204 205 3.488384 CGATTTCTCTCTCTGTCGGGAAG 60.488 52.174 0.00 0.00 0.00 3.46
205 206 2.423892 CGATTTCTCTCTCTGTCGGGAA 59.576 50.000 0.00 0.00 0.00 3.97
206 207 2.017782 CGATTTCTCTCTCTGTCGGGA 58.982 52.381 0.00 0.00 0.00 5.14
207 208 1.746220 ACGATTTCTCTCTCTGTCGGG 59.254 52.381 0.00 0.00 33.75 5.14
208 209 4.617808 TTACGATTTCTCTCTCTGTCGG 57.382 45.455 0.00 0.00 33.75 4.79
209 210 7.631822 TCTAATTACGATTTCTCTCTCTGTCG 58.368 38.462 0.00 0.00 35.42 4.35
210 211 9.959749 AATCTAATTACGATTTCTCTCTCTGTC 57.040 33.333 0.00 0.00 0.00 3.51
254 255 8.789762 GCCTAAGAAAATTAACTTGAGGTTACA 58.210 33.333 7.13 0.00 39.77 2.41
255 256 8.242053 GGCCTAAGAAAATTAACTTGAGGTTAC 58.758 37.037 0.00 0.00 39.77 2.50
256 257 7.945664 TGGCCTAAGAAAATTAACTTGAGGTTA 59.054 33.333 3.32 0.00 39.17 2.85
257 258 6.780522 TGGCCTAAGAAAATTAACTTGAGGTT 59.219 34.615 3.32 0.00 41.54 3.50
258 259 6.311735 TGGCCTAAGAAAATTAACTTGAGGT 58.688 36.000 3.32 0.00 0.00 3.85
259 260 6.834168 TGGCCTAAGAAAATTAACTTGAGG 57.166 37.500 3.32 9.59 0.00 3.86
260 261 8.141268 TGTTTGGCCTAAGAAAATTAACTTGAG 58.859 33.333 3.32 1.52 0.00 3.02
261 262 8.012957 TGTTTGGCCTAAGAAAATTAACTTGA 57.987 30.769 3.32 0.00 0.00 3.02
262 263 8.831715 ATGTTTGGCCTAAGAAAATTAACTTG 57.168 30.769 3.32 0.15 0.00 3.16
265 266 8.817100 GCATATGTTTGGCCTAAGAAAATTAAC 58.183 33.333 3.32 0.00 0.00 2.01
266 267 8.757877 AGCATATGTTTGGCCTAAGAAAATTAA 58.242 29.630 3.32 0.00 0.00 1.40
267 268 8.305046 AGCATATGTTTGGCCTAAGAAAATTA 57.695 30.769 3.32 0.00 0.00 1.40
268 269 7.186570 AGCATATGTTTGGCCTAAGAAAATT 57.813 32.000 3.32 0.00 0.00 1.82
269 270 6.796785 AGCATATGTTTGGCCTAAGAAAAT 57.203 33.333 3.32 0.00 0.00 1.82
270 271 6.603940 AAGCATATGTTTGGCCTAAGAAAA 57.396 33.333 3.32 0.00 0.00 2.29
271 272 6.603940 AAAGCATATGTTTGGCCTAAGAAA 57.396 33.333 3.32 0.00 0.00 2.52
272 273 7.896383 ATAAAGCATATGTTTGGCCTAAGAA 57.104 32.000 3.32 0.00 0.00 2.52
273 274 7.559533 TCAATAAAGCATATGTTTGGCCTAAGA 59.440 33.333 3.32 0.43 0.00 2.10
274 275 7.715657 TCAATAAAGCATATGTTTGGCCTAAG 58.284 34.615 3.32 0.00 0.00 2.18
275 276 7.652524 TCAATAAAGCATATGTTTGGCCTAA 57.347 32.000 3.32 0.00 0.00 2.69
276 277 7.660112 CATCAATAAAGCATATGTTTGGCCTA 58.340 34.615 3.32 0.00 0.00 3.93
277 278 6.518493 CATCAATAAAGCATATGTTTGGCCT 58.482 36.000 3.32 0.00 0.00 5.19
278 279 5.178067 GCATCAATAAAGCATATGTTTGGCC 59.822 40.000 5.49 0.00 0.00 5.36
279 280 5.987347 AGCATCAATAAAGCATATGTTTGGC 59.013 36.000 5.49 2.49 0.00 4.52
280 281 9.188588 CTAAGCATCAATAAAGCATATGTTTGG 57.811 33.333 5.49 0.00 0.00 3.28
281 282 9.955208 TCTAAGCATCAATAAAGCATATGTTTG 57.045 29.630 5.49 2.67 0.00 2.93
283 284 9.956720 GTTCTAAGCATCAATAAAGCATATGTT 57.043 29.630 4.29 0.00 0.00 2.71
284 285 8.285394 CGTTCTAAGCATCAATAAAGCATATGT 58.715 33.333 4.29 0.00 0.00 2.29
285 286 8.498358 TCGTTCTAAGCATCAATAAAGCATATG 58.502 33.333 0.00 0.00 0.00 1.78
286 287 8.607441 TCGTTCTAAGCATCAATAAAGCATAT 57.393 30.769 0.00 0.00 0.00 1.78
287 288 8.432110 TTCGTTCTAAGCATCAATAAAGCATA 57.568 30.769 0.00 0.00 0.00 3.14
288 289 6.925610 TCGTTCTAAGCATCAATAAAGCAT 57.074 33.333 0.00 0.00 0.00 3.79
289 290 6.735678 TTCGTTCTAAGCATCAATAAAGCA 57.264 33.333 0.00 0.00 0.00 3.91
290 291 9.884465 AATATTCGTTCTAAGCATCAATAAAGC 57.116 29.630 0.00 0.00 0.00 3.51
295 296 8.495949 CCGTAAATATTCGTTCTAAGCATCAAT 58.504 33.333 0.00 0.00 0.00 2.57
296 297 7.707464 TCCGTAAATATTCGTTCTAAGCATCAA 59.293 33.333 0.00 0.00 0.00 2.57
297 298 7.204604 TCCGTAAATATTCGTTCTAAGCATCA 58.795 34.615 0.00 0.00 0.00 3.07
298 299 7.633361 TCCGTAAATATTCGTTCTAAGCATC 57.367 36.000 0.00 0.00 0.00 3.91
299 300 9.136952 GTATCCGTAAATATTCGTTCTAAGCAT 57.863 33.333 0.00 0.00 0.00 3.79
300 301 8.355169 AGTATCCGTAAATATTCGTTCTAAGCA 58.645 33.333 0.00 0.00 0.00 3.91
301 302 8.636843 CAGTATCCGTAAATATTCGTTCTAAGC 58.363 37.037 0.00 0.00 0.00 3.09
302 303 9.674824 ACAGTATCCGTAAATATTCGTTCTAAG 57.325 33.333 0.00 0.00 0.00 2.18
303 304 9.454585 CACAGTATCCGTAAATATTCGTTCTAA 57.545 33.333 0.00 0.00 0.00 2.10
304 305 8.839343 TCACAGTATCCGTAAATATTCGTTCTA 58.161 33.333 0.00 0.00 0.00 2.10
305 306 7.646922 GTCACAGTATCCGTAAATATTCGTTCT 59.353 37.037 0.00 0.00 0.00 3.01
306 307 7.646922 AGTCACAGTATCCGTAAATATTCGTTC 59.353 37.037 0.00 0.00 0.00 3.95
307 308 7.434307 CAGTCACAGTATCCGTAAATATTCGTT 59.566 37.037 0.00 0.00 0.00 3.85
308 309 6.916387 CAGTCACAGTATCCGTAAATATTCGT 59.084 38.462 0.00 0.00 0.00 3.85
309 310 6.362551 CCAGTCACAGTATCCGTAAATATTCG 59.637 42.308 0.00 0.00 0.00 3.34
310 311 7.431249 TCCAGTCACAGTATCCGTAAATATTC 58.569 38.462 0.00 0.00 0.00 1.75
311 312 7.356089 TCCAGTCACAGTATCCGTAAATATT 57.644 36.000 0.00 0.00 0.00 1.28
312 313 6.971726 TCCAGTCACAGTATCCGTAAATAT 57.028 37.500 0.00 0.00 0.00 1.28
313 314 6.548251 TGATCCAGTCACAGTATCCGTAAATA 59.452 38.462 0.00 0.00 0.00 1.40
314 315 5.362717 TGATCCAGTCACAGTATCCGTAAAT 59.637 40.000 0.00 0.00 0.00 1.40
315 316 4.707934 TGATCCAGTCACAGTATCCGTAAA 59.292 41.667 0.00 0.00 0.00 2.01
316 317 4.274978 TGATCCAGTCACAGTATCCGTAA 58.725 43.478 0.00 0.00 0.00 3.18
317 318 3.893521 TGATCCAGTCACAGTATCCGTA 58.106 45.455 0.00 0.00 0.00 4.02
318 319 2.735151 TGATCCAGTCACAGTATCCGT 58.265 47.619 0.00 0.00 0.00 4.69
319 320 4.278419 TGTATGATCCAGTCACAGTATCCG 59.722 45.833 0.00 0.00 40.28 4.18
320 321 5.791336 TGTATGATCCAGTCACAGTATCC 57.209 43.478 0.00 0.00 40.28 2.59
321 322 7.712639 ACAATTGTATGATCCAGTCACAGTATC 59.287 37.037 9.97 0.00 40.28 2.24
322 323 7.568349 ACAATTGTATGATCCAGTCACAGTAT 58.432 34.615 9.97 0.00 40.28 2.12
323 324 6.946340 ACAATTGTATGATCCAGTCACAGTA 58.054 36.000 9.97 0.00 40.28 2.74
324 325 5.809001 ACAATTGTATGATCCAGTCACAGT 58.191 37.500 9.97 0.00 40.28 3.55
325 326 5.295292 GGACAATTGTATGATCCAGTCACAG 59.705 44.000 11.95 0.00 40.28 3.66
326 327 5.185454 GGACAATTGTATGATCCAGTCACA 58.815 41.667 11.95 0.00 40.28 3.58
327 328 4.576463 GGGACAATTGTATGATCCAGTCAC 59.424 45.833 11.95 0.00 40.28 3.67
328 329 4.227073 TGGGACAATTGTATGATCCAGTCA 59.773 41.667 11.95 0.00 36.82 3.41
329 330 4.780815 TGGGACAATTGTATGATCCAGTC 58.219 43.478 11.95 0.00 31.92 3.51
330 331 4.785301 CTGGGACAATTGTATGATCCAGT 58.215 43.478 22.59 0.00 38.70 4.00
331 332 3.567164 GCTGGGACAATTGTATGATCCAG 59.433 47.826 24.57 24.57 41.85 3.86
332 333 3.554934 GCTGGGACAATTGTATGATCCA 58.445 45.455 11.95 12.65 38.70 3.41
333 334 2.887152 GGCTGGGACAATTGTATGATCC 59.113 50.000 11.95 7.90 38.70 3.36
334 335 3.554934 TGGCTGGGACAATTGTATGATC 58.445 45.455 11.95 0.00 38.70 2.92
335 336 3.202818 TCTGGCTGGGACAATTGTATGAT 59.797 43.478 11.95 0.00 38.70 2.45
336 337 2.575735 TCTGGCTGGGACAATTGTATGA 59.424 45.455 11.95 0.00 38.70 2.15
337 338 2.684881 GTCTGGCTGGGACAATTGTATG 59.315 50.000 11.95 3.37 38.70 2.39
338 339 2.308570 TGTCTGGCTGGGACAATTGTAT 59.691 45.455 11.95 0.00 40.21 2.29
339 340 1.702401 TGTCTGGCTGGGACAATTGTA 59.298 47.619 11.95 0.00 40.21 2.41
340 341 0.478072 TGTCTGGCTGGGACAATTGT 59.522 50.000 11.78 11.78 40.21 2.71
341 342 0.883833 GTGTCTGGCTGGGACAATTG 59.116 55.000 3.24 3.24 43.90 2.32
342 343 0.606401 CGTGTCTGGCTGGGACAATT 60.606 55.000 9.29 0.00 43.90 2.32
343 344 1.003355 CGTGTCTGGCTGGGACAAT 60.003 57.895 9.29 0.00 43.90 2.71
344 345 1.480212 ATCGTGTCTGGCTGGGACAA 61.480 55.000 9.29 0.00 43.90 3.18
345 346 1.913262 ATCGTGTCTGGCTGGGACA 60.913 57.895 4.89 4.89 40.78 4.02
346 347 1.448540 CATCGTGTCTGGCTGGGAC 60.449 63.158 0.00 0.00 0.00 4.46
347 348 2.659063 CCATCGTGTCTGGCTGGGA 61.659 63.158 0.00 0.00 0.00 4.37
348 349 2.124983 CCATCGTGTCTGGCTGGG 60.125 66.667 0.00 0.00 0.00 4.45
353 354 1.299541 GTATTGGCCATCGTGTCTGG 58.700 55.000 6.09 0.00 36.81 3.86
354 355 1.134401 AGGTATTGGCCATCGTGTCTG 60.134 52.381 6.09 0.00 0.00 3.51
355 356 1.204146 AGGTATTGGCCATCGTGTCT 58.796 50.000 6.09 0.00 0.00 3.41
356 357 2.902705 TAGGTATTGGCCATCGTGTC 57.097 50.000 6.09 0.00 0.00 3.67
357 358 3.135712 TCATTAGGTATTGGCCATCGTGT 59.864 43.478 6.09 0.00 0.00 4.49
358 359 3.738982 TCATTAGGTATTGGCCATCGTG 58.261 45.455 6.09 0.00 0.00 4.35
359 360 4.134563 GTTCATTAGGTATTGGCCATCGT 58.865 43.478 6.09 4.89 0.00 3.73
360 361 4.133820 TGTTCATTAGGTATTGGCCATCG 58.866 43.478 6.09 0.00 0.00 3.84
361 362 5.507985 GCTTGTTCATTAGGTATTGGCCATC 60.508 44.000 6.09 0.00 0.00 3.51
362 363 4.342092 GCTTGTTCATTAGGTATTGGCCAT 59.658 41.667 6.09 0.00 0.00 4.40
363 364 3.699038 GCTTGTTCATTAGGTATTGGCCA 59.301 43.478 0.00 0.00 0.00 5.36
364 365 3.954258 AGCTTGTTCATTAGGTATTGGCC 59.046 43.478 0.00 0.00 0.00 5.36
365 366 5.239525 CCTAGCTTGTTCATTAGGTATTGGC 59.760 44.000 0.00 0.00 0.00 4.52
366 367 5.239525 GCCTAGCTTGTTCATTAGGTATTGG 59.760 44.000 0.00 0.00 36.02 3.16
367 368 5.050091 CGCCTAGCTTGTTCATTAGGTATTG 60.050 44.000 0.00 0.00 36.02 1.90
368 369 5.057149 CGCCTAGCTTGTTCATTAGGTATT 58.943 41.667 0.00 0.00 36.02 1.89
369 370 4.344102 TCGCCTAGCTTGTTCATTAGGTAT 59.656 41.667 0.00 0.00 36.02 2.73
370 371 3.702548 TCGCCTAGCTTGTTCATTAGGTA 59.297 43.478 0.00 0.00 36.02 3.08
371 372 2.500098 TCGCCTAGCTTGTTCATTAGGT 59.500 45.455 0.00 0.00 36.02 3.08
372 373 3.179443 TCGCCTAGCTTGTTCATTAGG 57.821 47.619 0.00 0.00 36.56 2.69
373 374 3.059325 GCATCGCCTAGCTTGTTCATTAG 60.059 47.826 0.00 0.00 0.00 1.73
374 375 2.872245 GCATCGCCTAGCTTGTTCATTA 59.128 45.455 0.00 0.00 0.00 1.90
375 376 1.672881 GCATCGCCTAGCTTGTTCATT 59.327 47.619 0.00 0.00 0.00 2.57
376 377 1.303309 GCATCGCCTAGCTTGTTCAT 58.697 50.000 0.00 0.00 0.00 2.57
377 378 1.083806 CGCATCGCCTAGCTTGTTCA 61.084 55.000 0.00 0.00 0.00 3.18
378 379 1.638467 CGCATCGCCTAGCTTGTTC 59.362 57.895 0.00 0.00 0.00 3.18
379 380 3.799753 CGCATCGCCTAGCTTGTT 58.200 55.556 0.00 0.00 0.00 2.83
390 391 2.842208 TTTAATTTGGAGGCGCATCG 57.158 45.000 16.72 0.00 0.00 3.84
391 392 5.351458 AGAATTTTAATTTGGAGGCGCATC 58.649 37.500 14.84 14.84 0.00 3.91
392 393 5.343307 AGAATTTTAATTTGGAGGCGCAT 57.657 34.783 10.83 0.00 0.00 4.73
393 394 4.799564 AGAATTTTAATTTGGAGGCGCA 57.200 36.364 10.83 0.00 0.00 6.09
417 418 9.198837 GGAAATTTAATTTGGAGACGCTAAAAA 57.801 29.630 7.72 0.00 30.39 1.94
418 419 8.581578 AGGAAATTTAATTTGGAGACGCTAAAA 58.418 29.630 7.72 0.00 30.39 1.52
419 420 8.117813 AGGAAATTTAATTTGGAGACGCTAAA 57.882 30.769 7.72 0.00 31.47 1.85
420 421 7.696992 AGGAAATTTAATTTGGAGACGCTAA 57.303 32.000 7.72 0.00 31.47 3.09
421 422 7.281549 GGTAGGAAATTTAATTTGGAGACGCTA 59.718 37.037 7.72 0.00 31.47 4.26
422 423 6.095021 GGTAGGAAATTTAATTTGGAGACGCT 59.905 38.462 7.72 0.00 31.47 5.07
423 424 6.095021 AGGTAGGAAATTTAATTTGGAGACGC 59.905 38.462 7.72 0.00 31.47 5.19
424 425 7.415206 CCAGGTAGGAAATTTAATTTGGAGACG 60.415 40.741 7.72 0.00 41.22 4.18
425 426 7.614192 TCCAGGTAGGAAATTTAATTTGGAGAC 59.386 37.037 7.72 1.25 45.65 3.36
426 427 7.704727 TCCAGGTAGGAAATTTAATTTGGAGA 58.295 34.615 7.72 0.00 45.65 3.71
427 428 7.954666 TCCAGGTAGGAAATTTAATTTGGAG 57.045 36.000 7.72 0.00 45.65 3.86
454 455 5.947566 GGGGTAAGGAGCAACTACATAAAAA 59.052 40.000 0.00 0.00 0.00 1.94
455 456 5.503002 GGGGTAAGGAGCAACTACATAAAA 58.497 41.667 0.00 0.00 0.00 1.52
456 457 4.080186 GGGGGTAAGGAGCAACTACATAAA 60.080 45.833 0.00 0.00 0.00 1.40
457 458 3.457012 GGGGGTAAGGAGCAACTACATAA 59.543 47.826 0.00 0.00 0.00 1.90
458 459 3.043418 GGGGGTAAGGAGCAACTACATA 58.957 50.000 0.00 0.00 0.00 2.29
459 460 1.844497 GGGGGTAAGGAGCAACTACAT 59.156 52.381 0.00 0.00 0.00 2.29
460 461 1.282382 GGGGGTAAGGAGCAACTACA 58.718 55.000 0.00 0.00 0.00 2.74
479 480 2.700407 ATCTAGGCTCCCCGACGAGG 62.700 65.000 0.00 0.00 40.63 4.63
480 481 1.228306 ATCTAGGCTCCCCGACGAG 60.228 63.158 0.00 0.00 35.76 4.18
481 482 1.528542 CATCTAGGCTCCCCGACGA 60.529 63.158 0.00 0.00 35.76 4.20
482 483 1.392710 AACATCTAGGCTCCCCGACG 61.393 60.000 0.00 0.00 35.76 5.12
483 484 0.389757 GAACATCTAGGCTCCCCGAC 59.610 60.000 0.00 0.00 35.76 4.79
484 485 0.759436 GGAACATCTAGGCTCCCCGA 60.759 60.000 0.00 0.00 35.76 5.14
485 486 1.048724 TGGAACATCTAGGCTCCCCG 61.049 60.000 0.00 0.00 35.76 5.73
486 487 1.213296 TTGGAACATCTAGGCTCCCC 58.787 55.000 0.00 0.00 39.30 4.81
487 488 3.366052 TTTTGGAACATCTAGGCTCCC 57.634 47.619 0.00 0.00 39.30 4.30
488 489 4.336280 ACTTTTTGGAACATCTAGGCTCC 58.664 43.478 0.00 0.00 39.30 4.70
489 490 4.396478 GGACTTTTTGGAACATCTAGGCTC 59.604 45.833 0.00 0.00 39.30 4.70
490 491 4.202567 TGGACTTTTTGGAACATCTAGGCT 60.203 41.667 0.00 0.00 39.30 4.58
532 533 5.359576 TGATCACATACATGGGCTTTTTACC 59.640 40.000 0.00 0.00 0.00 2.85
533 534 6.127758 TGTGATCACATACATGGGCTTTTTAC 60.128 38.462 24.56 0.00 36.21 2.01
534 535 5.948758 TGTGATCACATACATGGGCTTTTTA 59.051 36.000 24.56 0.00 36.21 1.52
567 568 4.299796 GCCAAAGGCCCTGGTGGA 62.300 66.667 20.04 0.00 44.06 4.02
1245 1250 4.426313 CGGAAGGGGCTTGGGGAC 62.426 72.222 0.00 0.00 0.00 4.46
1569 1574 1.710996 CCTCCTCCTCCTCCTCGCTA 61.711 65.000 0.00 0.00 0.00 4.26
1614 1622 3.256383 CCTCATCGCTCTTCTCAGATGAT 59.744 47.826 7.33 0.00 45.47 2.45
1663 1674 1.853963 AAGCTACCAGACTCATCGGT 58.146 50.000 0.00 0.00 36.27 4.69
1713 1724 4.763279 CCCTTACGCCCTTTCTTTTTCTTA 59.237 41.667 0.00 0.00 0.00 2.10
1796 1807 2.293170 TGCTATCACTCTCACTCTCCG 58.707 52.381 0.00 0.00 0.00 4.63
2051 2062 5.655974 TCTTCAGAATCAGACTGACTGCTAT 59.344 40.000 7.47 0.00 45.38 2.97
2262 2273 1.080230 CTCACCAGGTCTCAGTGCG 60.080 63.158 0.00 0.00 0.00 5.34
2370 2381 5.044919 ACTCATCACATACCCCAAATCTTCA 60.045 40.000 0.00 0.00 0.00 3.02
2400 2411 1.141657 GCATTCATCCTCTGGTGCCTA 59.858 52.381 0.00 0.00 33.49 3.93
2649 2660 8.512138 ACTACAGGAAAAACATGCATAACTAAC 58.488 33.333 0.00 0.00 33.22 2.34
2698 2718 6.092748 ACAGCACAAAACAGAAGTTACAAAG 58.907 36.000 0.00 0.00 36.84 2.77
2985 3022 8.703604 TTCCGTTTCAGATAGTGAAGATTTAG 57.296 34.615 0.00 0.00 46.09 1.85
3037 3077 7.600752 GCATACCTCTATGATCTTAGGACAAAC 59.399 40.741 13.97 0.00 32.66 2.93
3041 3081 6.842437 TGCATACCTCTATGATCTTAGGAC 57.158 41.667 13.97 0.56 32.66 3.85
3056 3096 9.772973 TTTCGTATAATGAGTAAATGCATACCT 57.227 29.630 0.00 0.00 0.00 3.08
3095 3135 5.247110 GGATCCAAGCTATCCAGTCAATCTA 59.753 44.000 6.95 0.00 42.21 1.98
3096 3136 4.041444 GGATCCAAGCTATCCAGTCAATCT 59.959 45.833 6.95 0.00 42.21 2.40
3097 3137 4.041444 AGGATCCAAGCTATCCAGTCAATC 59.959 45.833 15.82 0.00 44.62 2.67
3098 3138 3.979347 AGGATCCAAGCTATCCAGTCAAT 59.021 43.478 15.82 0.00 44.62 2.57
3138 3178 6.189677 TCAAAATAATGACTAAAGCCCACG 57.810 37.500 0.00 0.00 0.00 4.94
3140 3180 8.682710 GTGTATCAAAATAATGACTAAAGCCCA 58.317 33.333 0.00 0.00 30.82 5.36
3142 3182 8.903820 AGGTGTATCAAAATAATGACTAAAGCC 58.096 33.333 0.00 0.00 30.82 4.35
3190 3231 6.803320 GTGATCGCCATAACCATGAATTAATG 59.197 38.462 0.00 0.00 33.67 1.90
3191 3232 6.071952 GGTGATCGCCATAACCATGAATTAAT 60.072 38.462 20.66 0.00 33.77 1.40
3207 3250 1.004595 GTTCTTAACGGGTGATCGCC 58.995 55.000 17.45 17.45 0.00 5.54
3209 3252 1.659098 GCAGTTCTTAACGGGTGATCG 59.341 52.381 0.00 0.00 36.23 3.69
3210 3253 2.007608 GGCAGTTCTTAACGGGTGATC 58.992 52.381 0.00 0.00 36.23 2.92
3217 3260 0.320073 TGGGACGGCAGTTCTTAACG 60.320 55.000 0.00 0.00 36.23 3.18
3220 3263 1.271856 TCATGGGACGGCAGTTCTTA 58.728 50.000 0.00 0.00 0.00 2.10
3226 3269 0.107508 AACTGATCATGGGACGGCAG 60.108 55.000 0.00 0.00 0.00 4.85
3227 3270 0.107703 GAACTGATCATGGGACGGCA 60.108 55.000 0.00 0.00 0.00 5.69
3228 3271 0.179000 AGAACTGATCATGGGACGGC 59.821 55.000 0.00 0.00 0.00 5.68
3229 3272 1.759445 AGAGAACTGATCATGGGACGG 59.241 52.381 0.00 0.00 0.00 4.79
3230 3273 3.193263 CAAGAGAACTGATCATGGGACG 58.807 50.000 0.00 0.00 0.00 4.79
3231 3274 3.937706 CACAAGAGAACTGATCATGGGAC 59.062 47.826 0.00 0.00 0.00 4.46
3232 3275 3.840078 TCACAAGAGAACTGATCATGGGA 59.160 43.478 0.00 0.00 0.00 4.37
3233 3276 4.190001 CTCACAAGAGAACTGATCATGGG 58.810 47.826 0.00 0.00 44.98 4.00
3234 3277 4.829968 ACTCACAAGAGAACTGATCATGG 58.170 43.478 0.00 0.00 44.98 3.66
3235 3278 6.035866 GCTTACTCACAAGAGAACTGATCATG 59.964 42.308 0.00 0.00 44.98 3.07
3236 3279 6.070881 AGCTTACTCACAAGAGAACTGATCAT 60.071 38.462 0.00 0.00 44.98 2.45
3237 3280 5.244851 AGCTTACTCACAAGAGAACTGATCA 59.755 40.000 0.00 0.00 44.98 2.92
3238 3281 5.719173 AGCTTACTCACAAGAGAACTGATC 58.281 41.667 0.00 0.00 44.98 2.92
3239 3282 5.719173 GAGCTTACTCACAAGAGAACTGAT 58.281 41.667 0.00 0.00 44.98 2.90
3240 3283 5.127693 GAGCTTACTCACAAGAGAACTGA 57.872 43.478 0.00 0.00 44.98 3.41
3257 3300 9.578439 GCTTTAATCTAACATTCATTTGAGCTT 57.422 29.630 0.00 0.00 0.00 3.74
3258 3301 8.964772 AGCTTTAATCTAACATTCATTTGAGCT 58.035 29.630 0.00 0.00 0.00 4.09
3259 3302 9.017669 CAGCTTTAATCTAACATTCATTTGAGC 57.982 33.333 0.00 0.00 0.00 4.26
3260 3303 9.017669 GCAGCTTTAATCTAACATTCATTTGAG 57.982 33.333 0.00 0.00 0.00 3.02
3261 3304 7.975616 GGCAGCTTTAATCTAACATTCATTTGA 59.024 33.333 0.00 0.00 0.00 2.69
3262 3305 7.223387 GGGCAGCTTTAATCTAACATTCATTTG 59.777 37.037 0.00 0.00 0.00 2.32
3263 3306 7.124750 AGGGCAGCTTTAATCTAACATTCATTT 59.875 33.333 0.00 0.00 0.00 2.32
3264 3307 6.608808 AGGGCAGCTTTAATCTAACATTCATT 59.391 34.615 0.00 0.00 0.00 2.57
3265 3308 6.131961 AGGGCAGCTTTAATCTAACATTCAT 58.868 36.000 0.00 0.00 0.00 2.57
3266 3309 5.509498 AGGGCAGCTTTAATCTAACATTCA 58.491 37.500 0.00 0.00 0.00 2.57
3267 3310 6.456795 AAGGGCAGCTTTAATCTAACATTC 57.543 37.500 0.00 0.00 0.00 2.67
3268 3311 5.360999 GGAAGGGCAGCTTTAATCTAACATT 59.639 40.000 0.00 0.00 0.00 2.71
3269 3312 4.889995 GGAAGGGCAGCTTTAATCTAACAT 59.110 41.667 0.00 0.00 0.00 2.71
3270 3313 4.263727 TGGAAGGGCAGCTTTAATCTAACA 60.264 41.667 0.00 0.00 0.00 2.41
3271 3314 4.270008 TGGAAGGGCAGCTTTAATCTAAC 58.730 43.478 0.00 0.00 0.00 2.34
3272 3315 4.584638 TGGAAGGGCAGCTTTAATCTAA 57.415 40.909 0.00 0.00 0.00 2.10
3273 3316 4.165950 TCATGGAAGGGCAGCTTTAATCTA 59.834 41.667 0.00 0.00 0.00 1.98
3274 3317 3.053395 TCATGGAAGGGCAGCTTTAATCT 60.053 43.478 0.00 0.00 0.00 2.40
3275 3318 3.290710 TCATGGAAGGGCAGCTTTAATC 58.709 45.455 0.00 0.00 0.00 1.75
3282 3325 0.106819 ACAGATCATGGAAGGGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
3290 3333 4.529769 ACTCACAAGAGAACAGATCATGGA 59.470 41.667 0.00 0.00 44.98 3.41
3337 3380 2.027653 TGGTAAATGGTCTCACGCATCA 60.028 45.455 0.00 0.00 0.00 3.07
3343 3386 3.758554 AGCACATTGGTAAATGGTCTCAC 59.241 43.478 3.70 0.00 46.34 3.51
3347 3390 2.230992 TGCAGCACATTGGTAAATGGTC 59.769 45.455 0.00 0.00 46.34 4.02
3377 3420 8.798859 ATGACATCTAACATCCCAAATATAGC 57.201 34.615 0.00 0.00 0.00 2.97
3406 3450 8.431910 AAGGGACAGTTTAGAATGTAGAGTTA 57.568 34.615 0.00 0.00 0.00 2.24
3411 3455 7.365840 GTCAAAGGGACAGTTTAGAATGTAG 57.634 40.000 0.00 0.00 46.19 2.74
3426 3728 5.779241 AATATCCAGTGAAGTCAAAGGGA 57.221 39.130 0.00 0.00 0.00 4.20
3432 3734 9.904198 TTATGAATCAAATATCCAGTGAAGTCA 57.096 29.630 0.00 0.00 0.00 3.41
3493 3795 9.104965 TCATCCGGTTTACAGTATTCTAATTTG 57.895 33.333 0.00 0.00 0.00 2.32
3494 3796 9.675464 TTCATCCGGTTTACAGTATTCTAATTT 57.325 29.630 0.00 0.00 0.00 1.82
3496 3798 8.483758 ACTTCATCCGGTTTACAGTATTCTAAT 58.516 33.333 0.00 0.00 0.00 1.73
3501 3803 6.815142 GTGTACTTCATCCGGTTTACAGTATT 59.185 38.462 0.00 0.00 0.00 1.89
3502 3804 6.154021 AGTGTACTTCATCCGGTTTACAGTAT 59.846 38.462 0.00 0.00 0.00 2.12
3503 3805 5.477984 AGTGTACTTCATCCGGTTTACAGTA 59.522 40.000 0.00 0.22 0.00 2.74
3504 3806 4.282703 AGTGTACTTCATCCGGTTTACAGT 59.717 41.667 0.00 0.00 0.00 3.55
3505 3807 4.817517 AGTGTACTTCATCCGGTTTACAG 58.182 43.478 0.00 0.00 0.00 2.74
3506 3808 4.525487 AGAGTGTACTTCATCCGGTTTACA 59.475 41.667 0.00 0.00 0.00 2.41
3507 3809 5.069501 AGAGTGTACTTCATCCGGTTTAC 57.930 43.478 0.00 0.00 0.00 2.01
3508 3810 5.733620 AAGAGTGTACTTCATCCGGTTTA 57.266 39.130 0.00 0.00 0.00 2.01
3509 3811 4.618920 AAGAGTGTACTTCATCCGGTTT 57.381 40.909 0.00 0.00 0.00 3.27
3510 3812 4.618920 AAAGAGTGTACTTCATCCGGTT 57.381 40.909 0.00 0.00 0.00 4.44
3526 3828 8.968242 GCCTTTGAAAGTTATGTACAAAAAGAG 58.032 33.333 0.00 0.00 31.70 2.85
3528 3830 8.755018 CAGCCTTTGAAAGTTATGTACAAAAAG 58.245 33.333 0.00 1.08 31.70 2.27
3545 3847 7.524717 AAATAAGTTCTTAAGCAGCCTTTGA 57.475 32.000 0.00 0.00 32.47 2.69
3559 3861 9.907229 AAGCTAGCCTGTTTATAAATAAGTTCT 57.093 29.630 12.13 5.15 0.00 3.01
3568 3870 7.335627 TCTTAAGCAAGCTAGCCTGTTTATAA 58.664 34.615 19.43 9.69 34.23 0.98
3570 3872 5.745227 TCTTAAGCAAGCTAGCCTGTTTAT 58.255 37.500 19.43 2.25 34.23 1.40
3573 3875 3.703001 TCTTAAGCAAGCTAGCCTGTT 57.297 42.857 12.13 3.51 34.23 3.16
3575 3877 3.604582 AGTTCTTAAGCAAGCTAGCCTG 58.395 45.455 12.13 10.48 34.23 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.