Multiple sequence alignment - TraesCS5D01G243900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G243900 chr5D 100.000 3286 0 0 1 3286 352218189 352221474 0.000000e+00 6069
1 TraesCS5D01G243900 chr5D 82.456 228 37 2 1038 1265 413058989 413058765 2.590000e-46 196
2 TraesCS5D01G243900 chr5B 93.656 3310 96 45 1 3286 416852162 416848943 0.000000e+00 4844
3 TraesCS5D01G243900 chr5B 82.805 221 33 4 1046 1265 497757969 497757753 3.350000e-45 193
4 TraesCS5D01G243900 chr5A 91.451 2281 88 41 582 2796 453877598 453875359 0.000000e+00 3033
5 TraesCS5D01G243900 chr5A 89.647 425 24 12 1 414 453878352 453877937 1.040000e-144 523
6 TraesCS5D01G243900 chr5A 81.897 232 39 2 1034 1265 525079281 525079053 3.350000e-45 193
7 TraesCS5D01G243900 chr4D 86.826 334 38 6 1489 1819 301763371 301763041 5.180000e-98 368
8 TraesCS5D01G243900 chr4D 86.275 102 13 1 971 1071 301763479 301763378 3.470000e-20 110
9 TraesCS5D01G243900 chr2B 86.634 202 24 2 1057 1258 146442449 146442251 1.530000e-53 220
10 TraesCS5D01G243900 chr2A 86.634 202 24 2 1057 1258 92318263 92318065 1.530000e-53 220
11 TraesCS5D01G243900 chr2D 87.179 195 22 2 1064 1258 94319393 94319202 5.520000e-53 219
12 TraesCS5D01G243900 chr2D 83.598 189 26 5 1071 1258 512043233 512043049 4.360000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G243900 chr5D 352218189 352221474 3285 False 6069 6069 100.000 1 3286 1 chr5D.!!$F1 3285
1 TraesCS5D01G243900 chr5B 416848943 416852162 3219 True 4844 4844 93.656 1 3286 1 chr5B.!!$R1 3285
2 TraesCS5D01G243900 chr5A 453875359 453878352 2993 True 1778 3033 90.549 1 2796 2 chr5A.!!$R2 2795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 1115 0.179018 GCCACCACCTCAAACTCACT 60.179 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2582 2890 1.357258 CGCCACAGTTCAGCAGCTAG 61.357 60.0 0.0 0.0 0.0 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 26 2.154798 CTCCTCCGCAACGAAGGACA 62.155 60.000 0.00 0.00 35.38 4.02
53 55 5.220931 GCACAGAAAATCTCAACTCAACAGT 60.221 40.000 0.00 0.00 0.00 3.55
55 57 7.467267 GCACAGAAAATCTCAACTCAACAGTAA 60.467 37.037 0.00 0.00 30.14 2.24
59 61 9.442047 AGAAAATCTCAACTCAACAGTAATAGG 57.558 33.333 0.00 0.00 30.14 2.57
154 156 3.330267 GGACTTGGAACAGTGATCTGAC 58.670 50.000 0.00 0.00 43.76 3.51
187 193 1.097547 CAAAGGAGCCTATGTGCCCG 61.098 60.000 0.00 0.00 0.00 6.13
201 207 2.125673 CCCGTTCGTACCCTGCTG 60.126 66.667 0.00 0.00 0.00 4.41
239 251 2.604614 GCGATGGCGGAAATCCAATTAC 60.605 50.000 0.00 0.00 37.13 1.89
240 252 2.349438 CGATGGCGGAAATCCAATTACG 60.349 50.000 0.00 0.00 37.13 3.18
241 253 2.116827 TGGCGGAAATCCAATTACGT 57.883 45.000 0.00 0.00 35.14 3.57
242 254 3.263489 TGGCGGAAATCCAATTACGTA 57.737 42.857 0.00 0.00 35.14 3.57
409 422 2.649034 CCCGGCGCGAGTATACAT 59.351 61.111 12.10 0.00 0.00 2.29
414 427 1.728179 CGGCGCGAGTATACATGGTAG 60.728 57.143 12.10 0.00 0.00 3.18
426 439 8.253867 AGTATACATGGTAGTATTTTCCCGAA 57.746 34.615 5.50 0.00 36.23 4.30
431 444 3.054948 TGGTAGTATTTTCCCGAACCTGG 60.055 47.826 0.00 0.00 0.00 4.45
487 500 4.536065 TGTGTGACGAGCATTTGATTTTC 58.464 39.130 0.00 0.00 0.00 2.29
538 753 5.852282 ATATTTTGGGATCGAAAGGGTTG 57.148 39.130 0.00 0.00 30.50 3.77
621 861 5.348997 GGTCTACCTTGAAAGTTGAATCTCG 59.651 44.000 0.00 0.00 0.00 4.04
661 901 1.232621 CCCTCCGAAACGAAACACCC 61.233 60.000 0.00 0.00 0.00 4.61
662 902 0.533308 CCTCCGAAACGAAACACCCA 60.533 55.000 0.00 0.00 0.00 4.51
663 903 0.865769 CTCCGAAACGAAACACCCAG 59.134 55.000 0.00 0.00 0.00 4.45
664 904 0.464870 TCCGAAACGAAACACCCAGA 59.535 50.000 0.00 0.00 0.00 3.86
787 1032 3.721706 CCCGCCTGCCTTCCTTCT 61.722 66.667 0.00 0.00 0.00 2.85
863 1115 0.179018 GCCACCACCTCAAACTCACT 60.179 55.000 0.00 0.00 0.00 3.41
866 1118 1.068588 CACCACCTCAAACTCACTCGA 59.931 52.381 0.00 0.00 0.00 4.04
868 1120 1.068588 CCACCTCAAACTCACTCGACA 59.931 52.381 0.00 0.00 0.00 4.35
869 1121 2.128035 CACCTCAAACTCACTCGACAC 58.872 52.381 0.00 0.00 0.00 3.67
870 1122 1.068741 ACCTCAAACTCACTCGACACC 59.931 52.381 0.00 0.00 0.00 4.16
871 1123 1.605712 CCTCAAACTCACTCGACACCC 60.606 57.143 0.00 0.00 0.00 4.61
872 1124 0.391597 TCAAACTCACTCGACACCCC 59.608 55.000 0.00 0.00 0.00 4.95
930 1192 0.680618 TTTAGAAACCTCCGCCGACA 59.319 50.000 0.00 0.00 0.00 4.35
958 1220 3.133901 TCCAACTGTTTCAGTGCAGTAGA 59.866 43.478 3.12 1.60 44.62 2.59
959 1221 4.067896 CCAACTGTTTCAGTGCAGTAGAT 58.932 43.478 3.12 0.00 44.62 1.98
968 1230 2.031245 CAGTGCAGTAGATCCTCTAGCG 60.031 54.545 0.00 0.00 28.01 4.26
969 1231 1.950909 GTGCAGTAGATCCTCTAGCGT 59.049 52.381 0.00 0.00 28.01 5.07
970 1232 2.031508 GTGCAGTAGATCCTCTAGCGTC 60.032 54.545 0.00 0.00 28.01 5.19
971 1233 1.538075 GCAGTAGATCCTCTAGCGTCC 59.462 57.143 0.00 0.00 28.01 4.79
972 1234 1.801771 CAGTAGATCCTCTAGCGTCCG 59.198 57.143 0.00 0.00 28.01 4.79
973 1235 1.158434 GTAGATCCTCTAGCGTCCGG 58.842 60.000 0.00 0.00 28.01 5.14
974 1236 0.605860 TAGATCCTCTAGCGTCCGGC 60.606 60.000 0.00 0.00 44.05 6.13
1260 1522 1.993370 CAGCTCAACACCTACGTAAGC 59.007 52.381 5.26 5.26 45.62 3.09
1261 1523 0.989890 GCTCAACACCTACGTAAGCG 59.010 55.000 0.00 0.00 45.62 4.68
1262 1524 0.989890 CTCAACACCTACGTAAGCGC 59.010 55.000 0.00 0.00 42.83 5.92
1357 1624 2.127270 GCGTGTGTGGCAATGTCG 60.127 61.111 0.00 0.00 0.00 4.35
1358 1625 2.127270 CGTGTGTGGCAATGTCGC 60.127 61.111 0.00 0.00 0.00 5.19
1359 1626 2.891221 CGTGTGTGGCAATGTCGCA 61.891 57.895 0.00 0.00 0.00 5.10
1360 1627 1.358402 GTGTGTGGCAATGTCGCAA 59.642 52.632 1.50 0.00 26.63 4.85
1361 1628 0.248825 GTGTGTGGCAATGTCGCAAA 60.249 50.000 1.50 0.00 26.63 3.68
1362 1629 0.248825 TGTGTGGCAATGTCGCAAAC 60.249 50.000 1.50 0.00 26.63 2.93
1363 1630 0.030638 GTGTGGCAATGTCGCAAACT 59.969 50.000 1.50 0.00 26.63 2.66
1364 1631 0.310543 TGTGGCAATGTCGCAAACTC 59.689 50.000 0.00 0.00 0.00 3.01
1575 1842 3.872603 ACCGCCACCAGCAGTTCA 61.873 61.111 0.00 0.00 44.04 3.18
1580 1847 1.075482 CCACCAGCAGTTCATGGGT 59.925 57.895 0.00 0.00 41.13 4.51
1586 1853 1.064906 CAGCAGTTCATGGGTGAGGAT 60.065 52.381 0.00 0.00 35.39 3.24
2353 2628 3.573491 GGTAGCATCCGCGTTGCC 61.573 66.667 22.80 11.71 45.49 4.52
2479 2763 4.072839 GCAAGTGCTTAGTTAGGGTTCTT 58.927 43.478 0.00 0.00 38.21 2.52
2480 2764 4.154375 GCAAGTGCTTAGTTAGGGTTCTTC 59.846 45.833 0.00 0.00 38.21 2.87
2481 2765 5.552178 CAAGTGCTTAGTTAGGGTTCTTCT 58.448 41.667 0.00 0.00 0.00 2.85
2489 2773 7.363968 GCTTAGTTAGGGTTCTTCTGTCTGTAT 60.364 40.741 0.00 0.00 0.00 2.29
2582 2890 4.778534 TGTACAGTACTGCTCCAGTAAC 57.221 45.455 22.90 8.57 46.55 2.50
2664 2972 3.036577 GCAGCAAGTCAGCAGCAA 58.963 55.556 0.00 0.00 45.12 3.91
2665 2973 1.081376 GCAGCAAGTCAGCAGCAAG 60.081 57.895 0.00 0.00 45.12 4.01
2666 2974 1.081376 CAGCAAGTCAGCAGCAAGC 60.081 57.895 0.00 0.00 46.19 4.01
2695 3003 5.571357 TCGATTTAAAATCGCTTTCTTTGGC 59.429 36.000 0.00 0.00 40.95 4.52
2803 3117 1.602165 GGTCACACACACAGGTCGTAG 60.602 57.143 0.00 0.00 0.00 3.51
2864 3186 4.304048 ACTGCTGTAGAGTAGTACCAGT 57.696 45.455 8.93 0.00 42.78 4.00
2865 3187 5.432680 ACTGCTGTAGAGTAGTACCAGTA 57.567 43.478 8.93 0.00 42.78 2.74
2866 3188 5.184711 ACTGCTGTAGAGTAGTACCAGTAC 58.815 45.833 8.93 0.00 42.78 2.73
3016 3342 3.073735 AGAGGACTGAGCTGGCCG 61.074 66.667 0.00 0.00 0.00 6.13
3048 3374 6.155475 AGAAGATCTTGGGAAGTCTAATCG 57.845 41.667 14.00 0.00 0.00 3.34
3083 3409 1.977293 GAGGCCGGGCAAGAGATCTT 61.977 60.000 31.59 5.38 36.45 2.40
3120 3446 2.048222 CGGCTCAGCGAAACCTCA 60.048 61.111 0.00 0.00 0.00 3.86
3121 3447 1.448540 CGGCTCAGCGAAACCTCAT 60.449 57.895 0.00 0.00 0.00 2.90
3122 3448 1.424493 CGGCTCAGCGAAACCTCATC 61.424 60.000 0.00 0.00 0.00 2.92
3123 3449 0.107945 GGCTCAGCGAAACCTCATCT 60.108 55.000 0.00 0.00 0.00 2.90
3124 3450 1.285578 GCTCAGCGAAACCTCATCTC 58.714 55.000 0.00 0.00 0.00 2.75
3136 3462 1.480312 CCTCATCTCCATCTCTCGGGT 60.480 57.143 0.00 0.00 0.00 5.28
3141 3467 1.743321 CTCCATCTCTCGGGTGAGGC 61.743 65.000 0.00 0.00 42.79 4.70
3142 3468 2.415010 CATCTCTCGGGTGAGGCG 59.585 66.667 0.00 0.00 42.79 5.52
3144 3470 1.379977 ATCTCTCGGGTGAGGCGAA 60.380 57.895 0.00 0.00 42.79 4.70
3151 3477 3.787001 GGTGAGGCGAAGGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
3153 3479 4.005978 TGAGGCGAAGGGAGGGGA 62.006 66.667 0.00 0.00 0.00 4.81
3154 3480 3.471806 GAGGCGAAGGGAGGGGAC 61.472 72.222 0.00 0.00 0.00 4.46
3157 3483 4.452733 GCGAAGGGAGGGGACGTG 62.453 72.222 0.00 0.00 0.00 4.49
3158 3484 3.771160 CGAAGGGAGGGGACGTGG 61.771 72.222 0.00 0.00 0.00 4.94
3159 3485 4.097361 GAAGGGAGGGGACGTGGC 62.097 72.222 0.00 0.00 0.00 5.01
3160 3486 4.974438 AAGGGAGGGGACGTGGCA 62.974 66.667 0.00 0.00 0.00 4.92
3161 3487 4.741239 AGGGAGGGGACGTGGCAT 62.741 66.667 0.00 0.00 0.00 4.40
3162 3488 4.176752 GGGAGGGGACGTGGCATC 62.177 72.222 0.00 0.00 0.00 3.91
3163 3489 4.530857 GGAGGGGACGTGGCATCG 62.531 72.222 0.00 7.71 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 17 2.338984 GTGCGACCTGTCCTTCGT 59.661 61.111 0.00 0.00 37.56 3.85
24 26 2.808543 GTTGAGATTTTCTGTGCGACCT 59.191 45.455 0.00 0.00 0.00 3.85
55 57 9.508642 GGTTTCTCTATTTTGCTATTAGCCTAT 57.491 33.333 13.01 6.41 41.51 2.57
58 60 6.016192 GGGGTTTCTCTATTTTGCTATTAGCC 60.016 42.308 13.01 0.00 41.51 3.93
59 61 6.293462 CGGGGTTTCTCTATTTTGCTATTAGC 60.293 42.308 8.80 8.80 42.82 3.09
154 156 1.500303 TCCTTTGGATGGATGGATGGG 59.500 52.381 0.00 0.00 0.00 4.00
187 193 0.815734 TCTAGCAGCAGGGTACGAAC 59.184 55.000 0.00 0.00 0.00 3.95
201 207 0.798771 CGCACGTGACCTCTTCTAGC 60.799 60.000 22.23 0.00 0.00 3.42
239 251 2.823196 TGCCGCAGAAAAATGATACG 57.177 45.000 0.00 0.00 0.00 3.06
240 252 7.017645 CAGTATATGCCGCAGAAAAATGATAC 58.982 38.462 0.00 0.00 0.00 2.24
241 253 6.710295 ACAGTATATGCCGCAGAAAAATGATA 59.290 34.615 0.00 0.00 0.00 2.15
242 254 5.532406 ACAGTATATGCCGCAGAAAAATGAT 59.468 36.000 0.00 0.00 0.00 2.45
402 414 7.386025 GGTTCGGGAAAATACTACCATGTATAC 59.614 40.741 0.00 0.00 33.29 1.47
403 415 7.290714 AGGTTCGGGAAAATACTACCATGTATA 59.709 37.037 0.00 0.00 33.29 1.47
409 422 3.054948 CCAGGTTCGGGAAAATACTACCA 60.055 47.826 0.00 0.00 0.00 3.25
426 439 4.301072 TGGATCGATTTCTTTTCCAGGT 57.699 40.909 0.00 0.00 32.80 4.00
431 444 6.963805 GTCTGATGTTGGATCGATTTCTTTTC 59.036 38.462 0.00 0.00 0.00 2.29
473 486 3.740044 TCCGTCGAAAATCAAATGCTC 57.260 42.857 0.00 0.00 0.00 4.26
487 500 2.030958 CCCGACCCTTTTTCCGTCG 61.031 63.158 2.01 2.01 46.79 5.12
538 753 1.807142 CTCCGTTTTGAGGCCTCTTTC 59.193 52.381 32.28 18.25 0.00 2.62
559 781 1.764054 CCTGCACCCCCAAACCAAA 60.764 57.895 0.00 0.00 0.00 3.28
560 782 2.123077 CCTGCACCCCCAAACCAA 60.123 61.111 0.00 0.00 0.00 3.67
661 901 3.752731 CGTCTGTATGTCTGTCTGTCTG 58.247 50.000 0.00 0.00 0.00 3.51
662 902 2.162608 GCGTCTGTATGTCTGTCTGTCT 59.837 50.000 0.00 0.00 0.00 3.41
663 903 2.095212 TGCGTCTGTATGTCTGTCTGTC 60.095 50.000 0.00 0.00 0.00 3.51
664 904 1.886542 TGCGTCTGTATGTCTGTCTGT 59.113 47.619 0.00 0.00 0.00 3.41
787 1032 1.838073 GAAGGGAGTGGGCGAAGGAA 61.838 60.000 0.00 0.00 0.00 3.36
863 1115 1.270252 GGTTTTAACTCGGGGTGTCGA 60.270 52.381 0.00 0.00 37.60 4.20
866 1118 0.111061 GGGGTTTTAACTCGGGGTGT 59.889 55.000 0.00 0.00 0.00 4.16
868 1120 1.126948 TCGGGGTTTTAACTCGGGGT 61.127 55.000 0.00 0.00 31.32 4.95
869 1121 0.392060 CTCGGGGTTTTAACTCGGGG 60.392 60.000 0.00 0.00 31.32 5.73
870 1122 1.022982 GCTCGGGGTTTTAACTCGGG 61.023 60.000 0.95 3.25 31.32 5.14
871 1123 1.022982 GGCTCGGGGTTTTAACTCGG 61.023 60.000 0.00 2.51 0.00 4.63
872 1124 1.356527 CGGCTCGGGGTTTTAACTCG 61.357 60.000 0.00 0.00 0.00 4.18
930 1192 3.545703 CACTGAAACAGTTGGAGGAAGT 58.454 45.455 1.46 0.00 42.59 3.01
958 1220 3.288290 CGCCGGACGCTAGAGGAT 61.288 66.667 5.05 0.00 34.21 3.24
1294 1556 1.868498 CGTAAAGAGCAAACCGAACCA 59.132 47.619 0.00 0.00 0.00 3.67
1296 1558 3.732943 CATCGTAAAGAGCAAACCGAAC 58.267 45.455 0.00 0.00 0.00 3.95
1298 1560 1.730064 GCATCGTAAAGAGCAAACCGA 59.270 47.619 0.00 0.00 0.00 4.69
1299 1561 1.463056 TGCATCGTAAAGAGCAAACCG 59.537 47.619 0.00 0.00 32.73 4.44
1300 1562 3.429085 CATGCATCGTAAAGAGCAAACC 58.571 45.455 0.00 0.00 36.87 3.27
1341 1608 2.127270 GCGACATTGCCACACACG 60.127 61.111 0.00 0.00 0.00 4.49
1342 1609 0.248825 TTTGCGACATTGCCACACAC 60.249 50.000 0.00 0.00 0.00 3.82
1357 1624 1.444895 CCCTGCATTGCGAGTTTGC 60.445 57.895 3.84 0.00 36.91 3.68
1358 1625 1.213537 CCCCTGCATTGCGAGTTTG 59.786 57.895 3.84 0.00 0.00 2.93
1359 1626 0.827507 AACCCCTGCATTGCGAGTTT 60.828 50.000 3.84 0.00 0.00 2.66
1360 1627 1.228552 AACCCCTGCATTGCGAGTT 60.229 52.632 3.84 2.24 0.00 3.01
1361 1628 1.675641 GAACCCCTGCATTGCGAGT 60.676 57.895 3.84 0.00 0.00 4.18
1362 1629 2.409870 GGAACCCCTGCATTGCGAG 61.410 63.158 3.84 2.94 0.00 5.03
1363 1630 2.361104 GGAACCCCTGCATTGCGA 60.361 61.111 3.84 0.00 0.00 5.10
1364 1631 3.814268 CGGAACCCCTGCATTGCG 61.814 66.667 3.84 0.00 33.33 4.85
1561 1828 2.345760 CCCATGAACTGCTGGTGGC 61.346 63.158 0.00 0.00 42.22 5.01
1575 1842 1.298906 ATTGCCCCATCCTCACCCAT 61.299 55.000 0.00 0.00 0.00 4.00
1580 1847 2.279743 GCCATTGCCCCATCCTCA 59.720 61.111 0.00 0.00 0.00 3.86
2129 2396 1.992277 TCTCTTGCTCCCTGCTCCC 60.992 63.158 0.00 0.00 43.37 4.30
2132 2399 2.654079 CGGTCTCTTGCTCCCTGCT 61.654 63.158 0.00 0.00 43.37 4.24
2307 2574 3.516615 CTTGCTAGGTGAGTGAGCTAAC 58.483 50.000 0.00 0.00 37.12 2.34
2479 2763 4.760715 GGGCGATTAGAGTATACAGACAGA 59.239 45.833 5.50 0.00 0.00 3.41
2480 2764 4.519350 TGGGCGATTAGAGTATACAGACAG 59.481 45.833 5.50 0.00 0.00 3.51
2481 2765 4.466827 TGGGCGATTAGAGTATACAGACA 58.533 43.478 5.50 0.00 0.00 3.41
2489 2773 1.681793 GAGTGCTGGGCGATTAGAGTA 59.318 52.381 0.00 0.00 0.00 2.59
2552 2836 4.519213 AGCAGTACTGTACAAAAACACCA 58.481 39.130 23.44 0.00 0.00 4.17
2582 2890 1.357258 CGCCACAGTTCAGCAGCTAG 61.357 60.000 0.00 0.00 0.00 3.42
2663 2971 4.576463 AGCGATTTTAAATCGAGGATGCTT 59.424 37.500 34.70 12.26 43.59 3.91
2664 2972 4.130118 AGCGATTTTAAATCGAGGATGCT 58.870 39.130 34.70 21.52 43.59 3.79
2665 2973 4.474226 AGCGATTTTAAATCGAGGATGC 57.526 40.909 34.70 19.96 43.59 3.91
2666 2974 6.719365 AGAAAGCGATTTTAAATCGAGGATG 58.281 36.000 34.70 12.45 43.59 3.51
2695 3003 4.332637 AGCGCACGCAAAAGGCAG 62.333 61.111 18.24 0.00 45.17 4.85
2914 3240 4.089361 TCTCTATCTTCACCTGTCAAGCA 58.911 43.478 0.00 0.00 0.00 3.91
3016 3342 1.140652 CCAAGATCTTCTCCAGGCTCC 59.859 57.143 4.57 0.00 0.00 4.70
3048 3374 1.141234 CTCTACGTTTCCGGCTCCC 59.859 63.158 0.00 0.00 38.78 4.30
3083 3409 2.033141 GCAGCAGCAACCAGAGGA 59.967 61.111 0.00 0.00 41.58 3.71
3105 3431 1.285578 GAGATGAGGTTTCGCTGAGC 58.714 55.000 0.00 0.00 0.00 4.26
3120 3446 1.480312 CCTCACCCGAGAGATGGAGAT 60.480 57.143 0.00 0.00 42.34 2.75
3121 3447 0.106469 CCTCACCCGAGAGATGGAGA 60.106 60.000 0.00 0.00 42.34 3.71
3122 3448 1.743321 GCCTCACCCGAGAGATGGAG 61.743 65.000 0.00 0.00 42.34 3.86
3123 3449 1.758514 GCCTCACCCGAGAGATGGA 60.759 63.158 0.00 0.00 42.34 3.41
3124 3450 2.818132 GCCTCACCCGAGAGATGG 59.182 66.667 0.00 0.00 42.34 3.51
3136 3462 4.005978 TCCCCTCCCTTCGCCTCA 62.006 66.667 0.00 0.00 0.00 3.86
3141 3467 3.771160 CCACGTCCCCTCCCTTCG 61.771 72.222 0.00 0.00 0.00 3.79
3142 3468 4.097361 GCCACGTCCCCTCCCTTC 62.097 72.222 0.00 0.00 0.00 3.46
3144 3470 4.741239 ATGCCACGTCCCCTCCCT 62.741 66.667 0.00 0.00 0.00 4.20
3246 3572 2.766229 GCCTGGTCCCTCCTCTCC 60.766 72.222 0.00 0.00 37.07 3.71
3247 3573 2.766229 GGCCTGGTCCCTCCTCTC 60.766 72.222 0.00 0.00 37.07 3.20
3248 3574 4.787280 CGGCCTGGTCCCTCCTCT 62.787 72.222 0.00 0.00 37.07 3.69
3249 3575 4.779733 TCGGCCTGGTCCCTCCTC 62.780 72.222 0.00 0.00 37.07 3.71
3250 3576 4.787280 CTCGGCCTGGTCCCTCCT 62.787 72.222 0.00 0.00 37.07 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.