Multiple sequence alignment - TraesCS5D01G243100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G243100 chr5D 100.000 6364 0 0 1 6364 351392376 351398739 0.000000e+00 11753.0
1 TraesCS5D01G243100 chr5D 92.458 358 23 4 1 356 384426184 384425829 5.690000e-140 508.0
2 TraesCS5D01G243100 chr5D 100.000 219 0 0 1930 2148 351394091 351394309 7.680000e-109 405.0
3 TraesCS5D01G243100 chr5D 100.000 219 0 0 1716 1934 351394305 351394523 7.680000e-109 405.0
4 TraesCS5D01G243100 chr5D 79.675 246 38 8 345 580 351337559 351337316 3.950000e-37 167.0
5 TraesCS5D01G243100 chr5B 92.972 2803 106 31 3631 6364 412454426 412457206 0.000000e+00 4000.0
6 TraesCS5D01G243100 chr5B 91.855 884 54 11 2433 3301 412453475 412454355 0.000000e+00 1218.0
7 TraesCS5D01G243100 chr5B 89.524 630 25 11 688 1306 412452119 412452718 0.000000e+00 760.0
8 TraesCS5D01G243100 chr5B 84.144 637 51 22 1319 1934 412452776 412453383 7.160000e-159 571.0
9 TraesCS5D01G243100 chr5B 89.439 303 27 4 1942 2243 412453179 412453477 1.670000e-100 377.0
10 TraesCS5D01G243100 chr5B 87.970 266 29 2 3176 3440 121249500 121249763 1.720000e-80 311.0
11 TraesCS5D01G243100 chr5B 92.593 81 6 0 3655 3735 393755554 393755634 4.030000e-22 117.0
12 TraesCS5D01G243100 chr5A 92.231 2600 132 30 3438 5979 451733818 451736405 0.000000e+00 3618.0
13 TraesCS5D01G243100 chr5A 90.748 508 35 6 2279 2775 451732356 451732862 0.000000e+00 667.0
14 TraesCS5D01G243100 chr5A 90.836 371 33 1 2797 3167 451733443 451733812 4.430000e-136 496.0
15 TraesCS5D01G243100 chr5A 92.560 336 24 1 631 965 451730744 451731079 1.240000e-131 481.0
16 TraesCS5D01G243100 chr5A 87.361 269 32 1 3176 3444 132782014 132781748 2.230000e-79 307.0
17 TraesCS5D01G243100 chr5A 82.353 357 23 12 6024 6364 451736408 451736740 2.260000e-69 274.0
18 TraesCS5D01G243100 chr5A 95.000 40 2 0 1011 1050 268040202 268040241 5.330000e-06 63.9
19 TraesCS5D01G243100 chr5A 95.000 40 2 0 1011 1050 268040411 268040450 5.330000e-06 63.9
20 TraesCS5D01G243100 chr2D 93.771 594 25 7 1 585 6990623 6991213 0.000000e+00 881.0
21 TraesCS5D01G243100 chr2D 88.777 597 50 7 1 583 315480768 315481361 0.000000e+00 715.0
22 TraesCS5D01G243100 chr2D 78.543 247 41 8 347 583 77557335 77557091 1.110000e-32 152.0
23 TraesCS5D01G243100 chr6D 91.122 597 43 3 1 587 421588532 421587936 0.000000e+00 800.0
24 TraesCS5D01G243100 chr6D 81.600 250 35 7 345 584 421599901 421600149 5.030000e-46 196.0
25 TraesCS5D01G243100 chr6D 97.260 73 1 1 3663 3735 16750790 16750861 8.660000e-24 122.0
26 TraesCS5D01G243100 chr3D 88.567 586 49 15 1 583 388542548 388543118 0.000000e+00 695.0
27 TraesCS5D01G243100 chr3D 89.173 508 30 6 100 583 18330823 18330317 1.520000e-170 610.0
28 TraesCS5D01G243100 chr3D 92.717 357 21 4 1 355 399666597 399666244 1.580000e-140 510.0
29 TraesCS5D01G243100 chr3D 81.742 597 69 26 1 583 2387828 2387258 4.490000e-126 462.0
30 TraesCS5D01G243100 chr3D 91.892 74 4 2 3663 3735 343452036 343451964 1.130000e-17 102.0
31 TraesCS5D01G243100 chr3D 95.000 40 2 0 1011 1050 546262245 546262284 5.330000e-06 63.9
32 TraesCS5D01G243100 chr1D 86.555 595 66 9 1 585 12492767 12492177 1.500000e-180 643.0
33 TraesCS5D01G243100 chr1D 86.331 278 33 4 3176 3452 541848 541575 1.340000e-76 298.0
34 TraesCS5D01G243100 chr1D 89.286 56 4 2 3693 3748 368030426 368030373 1.140000e-07 69.4
35 TraesCS5D01G243100 chr3B 88.155 515 48 8 1 507 173241640 173242149 9.130000e-168 601.0
36 TraesCS5D01G243100 chr3B 84.483 348 45 4 244 583 453226570 453226916 1.020000e-87 335.0
37 TraesCS5D01G243100 chr3B 88.302 265 25 2 3176 3440 97755885 97756143 4.790000e-81 313.0
38 TraesCS5D01G243100 chr3B 81.641 256 41 2 333 584 217315777 217316030 2.330000e-49 207.0
39 TraesCS5D01G243100 chr3B 95.775 71 3 0 3665 3735 811444107 811444037 1.450000e-21 115.0
40 TraesCS5D01G243100 chr3B 91.358 81 7 0 3655 3735 678722706 678722786 1.880000e-20 111.0
41 TraesCS5D01G243100 chr7B 83.502 594 82 12 1 583 480248035 480248623 2.020000e-149 540.0
42 TraesCS5D01G243100 chr7B 89.130 46 5 0 1010 1055 329364897 329364852 2.480000e-04 58.4
43 TraesCS5D01G243100 chr1A 82.513 589 88 9 1 578 259897638 259898222 2.650000e-138 503.0
44 TraesCS5D01G243100 chr1A 87.912 273 26 4 3173 3441 434422672 434422941 1.330000e-81 315.0
45 TraesCS5D01G243100 chr7D 82.383 596 78 18 5 583 175820302 175819717 1.590000e-135 494.0
46 TraesCS5D01G243100 chr7D 79.675 246 39 7 347 583 501419033 501419276 3.950000e-37 167.0
47 TraesCS5D01G243100 chr7D 89.062 64 1 5 3655 3716 610219939 610219998 2.460000e-09 75.0
48 TraesCS5D01G243100 chr1B 88.015 267 30 1 3173 3439 376614968 376615232 1.330000e-81 315.0
49 TraesCS5D01G243100 chr1B 100.000 34 0 0 1017 1050 576227607 576227574 5.330000e-06 63.9
50 TraesCS5D01G243100 chr3A 89.286 252 23 2 3177 3428 475281059 475281306 4.790000e-81 313.0
51 TraesCS5D01G243100 chr3A 86.441 59 6 2 991 1048 64318825 64318882 5.330000e-06 63.9
52 TraesCS5D01G243100 chr2B 87.879 264 30 1 3176 3439 673002687 673002426 6.200000e-80 309.0
53 TraesCS5D01G243100 chr2B 95.062 81 4 0 3655 3735 760258423 760258343 1.860000e-25 128.0
54 TraesCS5D01G243100 chr2B 92.500 80 6 0 3655 3734 673092424 673092503 1.450000e-21 115.0
55 TraesCS5D01G243100 chr2B 100.000 34 0 0 1017 1050 576574424 576574391 5.330000e-06 63.9
56 TraesCS5D01G243100 chr2A 87.879 264 30 1 3176 3439 606574489 606574228 6.200000e-80 309.0
57 TraesCS5D01G243100 chr4D 81.423 253 37 6 345 587 437701285 437701033 1.400000e-46 198.0
58 TraesCS5D01G243100 chr4D 92.593 81 6 0 3655 3735 134126441 134126521 4.030000e-22 117.0
59 TraesCS5D01G243100 chr4D 91.026 78 5 2 3656 3732 315089793 315089717 3.140000e-18 104.0
60 TraesCS5D01G243100 chr4B 80.077 261 41 6 334 585 171122307 171122049 3.920000e-42 183.0
61 TraesCS5D01G243100 chr4B 92.593 81 6 0 3655 3735 159632290 159632210 4.030000e-22 117.0
62 TraesCS5D01G243100 chr4B 87.654 81 10 0 3655 3735 134605896 134605816 1.890000e-15 95.3
63 TraesCS5D01G243100 chr4A 93.878 49 3 0 3663 3711 728434706 728434658 2.460000e-09 75.0
64 TraesCS5D01G243100 chr6B 100.000 34 0 0 1017 1050 48068671 48068638 5.330000e-06 63.9
65 TraesCS5D01G243100 chr6A 95.000 40 2 0 1011 1050 545334224 545334263 5.330000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G243100 chr5D 351392376 351398739 6363 False 11753.0 11753 100.0000 1 6364 1 chr5D.!!$F1 6363
1 TraesCS5D01G243100 chr5B 412452119 412457206 5087 False 1385.2 4000 89.5868 688 6364 5 chr5B.!!$F3 5676
2 TraesCS5D01G243100 chr5A 451730744 451736740 5996 False 1107.2 3618 89.7456 631 6364 5 chr5A.!!$F2 5733
3 TraesCS5D01G243100 chr2D 6990623 6991213 590 False 881.0 881 93.7710 1 585 1 chr2D.!!$F1 584
4 TraesCS5D01G243100 chr2D 315480768 315481361 593 False 715.0 715 88.7770 1 583 1 chr2D.!!$F2 582
5 TraesCS5D01G243100 chr6D 421587936 421588532 596 True 800.0 800 91.1220 1 587 1 chr6D.!!$R1 586
6 TraesCS5D01G243100 chr3D 388542548 388543118 570 False 695.0 695 88.5670 1 583 1 chr3D.!!$F1 582
7 TraesCS5D01G243100 chr3D 18330317 18330823 506 True 610.0 610 89.1730 100 583 1 chr3D.!!$R2 483
8 TraesCS5D01G243100 chr3D 2387258 2387828 570 True 462.0 462 81.7420 1 583 1 chr3D.!!$R1 582
9 TraesCS5D01G243100 chr1D 12492177 12492767 590 True 643.0 643 86.5550 1 585 1 chr1D.!!$R2 584
10 TraesCS5D01G243100 chr3B 173241640 173242149 509 False 601.0 601 88.1550 1 507 1 chr3B.!!$F2 506
11 TraesCS5D01G243100 chr7B 480248035 480248623 588 False 540.0 540 83.5020 1 583 1 chr7B.!!$F1 582
12 TraesCS5D01G243100 chr1A 259897638 259898222 584 False 503.0 503 82.5130 1 578 1 chr1A.!!$F1 577
13 TraesCS5D01G243100 chr7D 175819717 175820302 585 True 494.0 494 82.3830 5 583 1 chr7D.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 650 0.030638 CTGTTCGGTGCTTTGTTGGG 59.969 55.0 0.00 0.0 0.00 4.12 F
1722 1912 0.026803 GCAGTTTCTCGCGCCATTAG 59.973 55.0 0.00 0.0 0.00 1.73 F
2043 2237 0.108615 CAGTGCAGTAAGTAGCCGCT 60.109 55.0 0.00 0.0 0.00 5.52 F
2044 2238 0.108615 AGTGCAGTAAGTAGCCGCTG 60.109 55.0 2.16 0.0 0.00 5.18 F
3589 4531 0.034283 TTGCCAGCCATAGCATGACA 60.034 50.0 0.00 0.0 43.56 3.58 F
4361 5324 2.289072 GGCTGCTATCGAGGCTATCAAA 60.289 50.0 13.07 0.0 33.29 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2218 0.108615 AGCGGCTACTTACTGCACTG 60.109 55.000 0.00 0.00 42.07 3.66 R
3582 4524 0.181114 TGCTATCCCTGGTGTCATGC 59.819 55.000 0.00 0.00 0.00 4.06 R
3589 4531 1.298953 ACCAACATGCTATCCCTGGT 58.701 50.000 0.00 0.00 32.31 4.00 R
4177 5140 9.713740 CATAAGAGATTAAATCACAAGCTCAAC 57.286 33.333 3.52 0.00 40.14 3.18 R
4658 5621 0.037882 TCTTCGAGACTGCAGCCTTG 60.038 55.000 15.27 12.85 0.00 3.61 R
6032 7044 0.032615 AGAAGCAACAACCCAACCCA 60.033 50.000 0.00 0.00 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.550481 ACAAATTTCCAAATCCAAGCCAAAAT 59.450 30.769 0.00 0.00 0.00 1.82
296 332 3.751479 AGTGACACACAGACTATGCAA 57.249 42.857 8.59 0.00 36.74 4.08
316 352 1.153509 GCCTAAGAAACGGGCGCTA 60.154 57.895 7.64 0.00 36.37 4.26
361 397 0.947244 GCTAGGCGCTGCACATTAAT 59.053 50.000 7.64 0.00 35.14 1.40
555 602 4.394795 GTCAGTTCGTGATTTGATTTCGG 58.605 43.478 0.00 0.00 37.56 4.30
562 609 3.009723 GTGATTTGATTTCGGCCTGAGA 58.990 45.455 0.00 0.00 0.00 3.27
587 634 6.182627 TCAAATATGTGATTTCTGCCTCTGT 58.817 36.000 0.00 0.00 0.00 3.41
588 635 6.660521 TCAAATATGTGATTTCTGCCTCTGTT 59.339 34.615 0.00 0.00 0.00 3.16
589 636 6.690194 AATATGTGATTTCTGCCTCTGTTC 57.310 37.500 0.00 0.00 0.00 3.18
590 637 2.416747 TGTGATTTCTGCCTCTGTTCG 58.583 47.619 0.00 0.00 0.00 3.95
591 638 1.734465 GTGATTTCTGCCTCTGTTCGG 59.266 52.381 0.00 0.00 0.00 4.30
592 639 1.347707 TGATTTCTGCCTCTGTTCGGT 59.652 47.619 0.00 0.00 0.00 4.69
593 640 1.734465 GATTTCTGCCTCTGTTCGGTG 59.266 52.381 0.00 0.00 0.00 4.94
594 641 0.884704 TTTCTGCCTCTGTTCGGTGC 60.885 55.000 0.00 0.00 0.00 5.01
595 642 1.758440 TTCTGCCTCTGTTCGGTGCT 61.758 55.000 0.00 0.00 0.00 4.40
596 643 1.302033 CTGCCTCTGTTCGGTGCTT 60.302 57.895 0.00 0.00 0.00 3.91
597 644 0.886490 CTGCCTCTGTTCGGTGCTTT 60.886 55.000 0.00 0.00 0.00 3.51
598 645 1.165907 TGCCTCTGTTCGGTGCTTTG 61.166 55.000 0.00 0.00 0.00 2.77
599 646 1.166531 GCCTCTGTTCGGTGCTTTGT 61.167 55.000 0.00 0.00 0.00 2.83
600 647 1.308998 CCTCTGTTCGGTGCTTTGTT 58.691 50.000 0.00 0.00 0.00 2.83
601 648 1.002468 CCTCTGTTCGGTGCTTTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
602 649 1.002468 CTCTGTTCGGTGCTTTGTTGG 60.002 52.381 0.00 0.00 0.00 3.77
603 650 0.030638 CTGTTCGGTGCTTTGTTGGG 59.969 55.000 0.00 0.00 0.00 4.12
604 651 1.299850 GTTCGGTGCTTTGTTGGGC 60.300 57.895 0.00 0.00 0.00 5.36
605 652 1.454847 TTCGGTGCTTTGTTGGGCT 60.455 52.632 0.00 0.00 0.00 5.19
606 653 1.733402 TTCGGTGCTTTGTTGGGCTG 61.733 55.000 0.00 0.00 0.00 4.85
607 654 2.736531 GGTGCTTTGTTGGGCTGG 59.263 61.111 0.00 0.00 0.00 4.85
608 655 2.133641 GGTGCTTTGTTGGGCTGGT 61.134 57.895 0.00 0.00 0.00 4.00
609 656 0.825840 GGTGCTTTGTTGGGCTGGTA 60.826 55.000 0.00 0.00 0.00 3.25
610 657 1.036707 GTGCTTTGTTGGGCTGGTAA 58.963 50.000 0.00 0.00 0.00 2.85
611 658 1.410882 GTGCTTTGTTGGGCTGGTAAA 59.589 47.619 0.00 0.00 0.00 2.01
612 659 1.686052 TGCTTTGTTGGGCTGGTAAAG 59.314 47.619 0.00 0.00 0.00 1.85
613 660 1.000843 GCTTTGTTGGGCTGGTAAAGG 59.999 52.381 0.00 0.00 0.00 3.11
614 661 2.593026 CTTTGTTGGGCTGGTAAAGGA 58.407 47.619 0.00 0.00 0.00 3.36
615 662 2.286365 TTGTTGGGCTGGTAAAGGAG 57.714 50.000 0.00 0.00 0.00 3.69
616 663 0.251165 TGTTGGGCTGGTAAAGGAGC 60.251 55.000 0.00 0.00 34.23 4.70
617 664 0.251165 GTTGGGCTGGTAAAGGAGCA 60.251 55.000 0.00 0.00 36.90 4.26
618 665 0.704076 TTGGGCTGGTAAAGGAGCAT 59.296 50.000 0.00 0.00 36.90 3.79
619 666 0.034186 TGGGCTGGTAAAGGAGCATG 60.034 55.000 0.00 0.00 36.90 4.06
620 667 0.753111 GGGCTGGTAAAGGAGCATGG 60.753 60.000 0.00 0.00 36.90 3.66
621 668 0.255890 GGCTGGTAAAGGAGCATGGA 59.744 55.000 0.00 0.00 36.90 3.41
622 669 1.340991 GGCTGGTAAAGGAGCATGGAA 60.341 52.381 0.00 0.00 36.90 3.53
623 670 1.745653 GCTGGTAAAGGAGCATGGAAC 59.254 52.381 0.00 0.00 34.32 3.62
643 690 2.990967 CCCAACAGGCCGCATTGT 60.991 61.111 13.49 3.05 0.00 2.71
680 727 2.576832 CCCACCACTACGGACGGTT 61.577 63.158 0.00 0.00 38.63 4.44
797 844 0.903454 ATCTCCGGTCCCAAACGAGT 60.903 55.000 0.00 0.00 0.00 4.18
798 845 1.374252 CTCCGGTCCCAAACGAGTG 60.374 63.158 0.00 0.00 0.00 3.51
886 939 2.530958 ATTCACCCTAACCCGCACGG 62.531 60.000 1.02 1.02 37.81 4.94
888 941 2.924101 ACCCTAACCCGCACGGAA 60.924 61.111 11.42 0.00 37.50 4.30
929 982 4.277593 CCAAAAGGCGCCGCACAA 62.278 61.111 23.20 0.00 0.00 3.33
985 1041 4.803426 CTGCTCACTCGACCGGCC 62.803 72.222 0.00 0.00 0.00 6.13
1038 1094 2.203938 TCCACCTCCACCTCCACC 60.204 66.667 0.00 0.00 0.00 4.61
1039 1095 2.203998 CCACCTCCACCTCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
1040 1096 2.294078 CCACCTCCACCTCCACCTC 61.294 68.421 0.00 0.00 0.00 3.85
1102 1158 1.979619 ATTAAACCTCCCCTCCGCCG 61.980 60.000 0.00 0.00 0.00 6.46
1263 1319 4.446413 CCCGTACAGGTCCGTGCC 62.446 72.222 0.00 0.00 38.74 5.01
1325 1444 7.414540 GGTGTCAAAATTAGCATACCTCTGAAG 60.415 40.741 0.00 0.00 0.00 3.02
1327 1446 7.119699 TGTCAAAATTAGCATACCTCTGAAGTG 59.880 37.037 0.00 0.00 0.00 3.16
1331 1450 8.894768 AAATTAGCATACCTCTGAAGTGTATC 57.105 34.615 0.00 0.00 0.00 2.24
1335 1460 1.557099 ACCTCTGAAGTGTATCGCCA 58.443 50.000 0.00 0.00 0.00 5.69
1337 1462 2.501723 ACCTCTGAAGTGTATCGCCAAT 59.498 45.455 0.00 0.00 0.00 3.16
1339 1464 3.941483 CCTCTGAAGTGTATCGCCAATTT 59.059 43.478 0.00 0.00 0.00 1.82
1344 1469 4.155826 TGAAGTGTATCGCCAATTTTCCTG 59.844 41.667 0.00 0.00 0.00 3.86
1368 1493 1.497991 TCGAACTACTGTTGCTGCAC 58.502 50.000 0.00 0.00 36.39 4.57
1461 1592 2.415893 GCTGTGCATAACCATGTGAACC 60.416 50.000 0.00 0.00 34.40 3.62
1493 1624 6.425577 GAGTAGCTCCAATATAGTAGGACG 57.574 45.833 0.00 0.00 0.00 4.79
1506 1637 9.745880 AATATAGTAGGACGTATTTTGTCACAG 57.254 33.333 0.00 0.00 38.10 3.66
1562 1693 7.739498 TTTTTAGGCTAGTTACAACTTCAGG 57.261 36.000 0.00 0.00 40.37 3.86
1579 1721 1.069906 CAGGTTGCGTTTGCTACTGTC 60.070 52.381 2.24 0.00 44.71 3.51
1648 1800 1.880894 GGGAAAACCTAACTGCCGC 59.119 57.895 0.00 0.00 35.85 6.53
1654 1806 0.320771 AACCTAACTGCCGCAGACAG 60.321 55.000 27.12 19.97 41.08 3.51
1659 1811 3.143675 ACTGCCGCAGACAGTATTG 57.856 52.632 27.12 0.00 46.32 1.90
1661 1813 1.078497 TGCCGCAGACAGTATTGGG 60.078 57.895 0.00 0.00 0.00 4.12
1663 1815 1.369091 GCCGCAGACAGTATTGGGTG 61.369 60.000 0.00 0.00 0.00 4.61
1664 1816 1.369091 CCGCAGACAGTATTGGGTGC 61.369 60.000 4.55 4.55 35.13 5.01
1666 1818 1.533625 GCAGACAGTATTGGGTGCAA 58.466 50.000 8.59 0.00 37.20 4.08
1667 1819 2.094675 GCAGACAGTATTGGGTGCAAT 58.905 47.619 8.59 0.00 37.20 3.56
1701 1891 7.101054 TCTTTATATTTGTGCGGTTGTAGACT 58.899 34.615 0.00 0.00 0.00 3.24
1704 1894 0.941542 TTGTGCGGTTGTAGACTTGC 59.058 50.000 0.00 0.00 0.00 4.01
1705 1895 0.179070 TGTGCGGTTGTAGACTTGCA 60.179 50.000 0.00 0.00 37.30 4.08
1706 1896 0.512952 GTGCGGTTGTAGACTTGCAG 59.487 55.000 0.00 0.00 39.20 4.41
1708 1898 1.226746 GCGGTTGTAGACTTGCAGTT 58.773 50.000 0.00 0.00 32.35 3.16
1709 1899 1.602377 GCGGTTGTAGACTTGCAGTTT 59.398 47.619 0.00 0.00 32.35 2.66
1710 1900 2.349532 GCGGTTGTAGACTTGCAGTTTC 60.350 50.000 0.00 0.00 32.35 2.78
1711 1901 3.131396 CGGTTGTAGACTTGCAGTTTCT 58.869 45.455 0.00 0.00 0.00 2.52
1712 1902 3.184581 CGGTTGTAGACTTGCAGTTTCTC 59.815 47.826 0.00 0.00 0.00 2.87
1713 1903 3.184581 GGTTGTAGACTTGCAGTTTCTCG 59.815 47.826 0.00 0.00 0.00 4.04
1714 1904 2.404215 TGTAGACTTGCAGTTTCTCGC 58.596 47.619 0.00 0.00 0.00 5.03
1715 1905 1.387084 GTAGACTTGCAGTTTCTCGCG 59.613 52.381 0.00 0.00 0.00 5.87
1716 1906 1.154580 GACTTGCAGTTTCTCGCGC 60.155 57.895 0.00 0.00 0.00 6.86
1717 1907 2.174349 CTTGCAGTTTCTCGCGCC 59.826 61.111 0.00 0.00 0.00 6.53
1718 1908 2.590291 TTGCAGTTTCTCGCGCCA 60.590 55.556 0.00 0.00 0.00 5.69
1719 1909 1.915614 CTTGCAGTTTCTCGCGCCAT 61.916 55.000 0.00 0.00 0.00 4.40
1720 1910 1.514678 TTGCAGTTTCTCGCGCCATT 61.515 50.000 0.00 0.00 0.00 3.16
1721 1911 0.672091 TGCAGTTTCTCGCGCCATTA 60.672 50.000 0.00 0.00 0.00 1.90
1722 1912 0.026803 GCAGTTTCTCGCGCCATTAG 59.973 55.000 0.00 0.00 0.00 1.73
1723 1913 0.652592 CAGTTTCTCGCGCCATTAGG 59.347 55.000 0.00 0.00 38.23 2.69
1740 1930 6.459923 CCATTAGGCAGATAGGAAGTTAGTC 58.540 44.000 0.00 0.00 0.00 2.59
1809 2000 2.601266 GCAAGAACGTTCGCAGCTTTTA 60.601 45.455 25.03 0.00 0.00 1.52
1818 2009 0.588252 CGCAGCTTTTACAGTGCAGT 59.412 50.000 0.00 0.00 35.57 4.40
1824 2015 5.389935 GCAGCTTTTACAGTGCAGTAAGTAG 60.390 44.000 0.00 0.55 35.57 2.57
1827 2018 2.933495 TACAGTGCAGTAAGTAGCCG 57.067 50.000 0.00 0.00 0.00 5.52
1831 2022 1.084370 GTGCAGTAAGTAGCCGCTGG 61.084 60.000 2.16 0.00 0.00 4.85
1832 2023 1.254975 TGCAGTAAGTAGCCGCTGGA 61.255 55.000 2.16 0.00 0.00 3.86
1873 2067 3.585732 AGAACGTCAGAAGGGGGATAAAA 59.414 43.478 0.00 0.00 0.00 1.52
1904 2098 9.525826 ACTGTTTGAGAGAAAAGGATTGATATT 57.474 29.630 0.00 0.00 0.00 1.28
1953 2147 6.426646 CCATTAGGCAGATAGGAAGTTAGT 57.573 41.667 0.00 0.00 0.00 2.24
1954 2148 6.459923 CCATTAGGCAGATAGGAAGTTAGTC 58.540 44.000 0.00 0.00 0.00 2.59
1955 2149 6.268847 CCATTAGGCAGATAGGAAGTTAGTCT 59.731 42.308 0.00 0.00 0.00 3.24
1956 2150 7.451877 CCATTAGGCAGATAGGAAGTTAGTCTA 59.548 40.741 0.00 0.00 0.00 2.59
1957 2151 8.519526 CATTAGGCAGATAGGAAGTTAGTCTAG 58.480 40.741 0.00 0.00 0.00 2.43
1958 2152 6.020881 AGGCAGATAGGAAGTTAGTCTAGT 57.979 41.667 0.00 0.00 0.00 2.57
1959 2153 6.436890 AGGCAGATAGGAAGTTAGTCTAGTT 58.563 40.000 0.00 0.00 0.00 2.24
1960 2154 7.584532 AGGCAGATAGGAAGTTAGTCTAGTTA 58.415 38.462 0.00 0.00 0.00 2.24
1961 2155 8.228905 AGGCAGATAGGAAGTTAGTCTAGTTAT 58.771 37.037 0.00 0.00 0.00 1.89
1962 2156 8.862085 GGCAGATAGGAAGTTAGTCTAGTTATT 58.138 37.037 0.00 0.00 0.00 1.40
1970 2164 9.085250 GGAAGTTAGTCTAGTTATTTGTGTAGC 57.915 37.037 0.00 0.00 0.00 3.58
1971 2165 9.635520 GAAGTTAGTCTAGTTATTTGTGTAGCA 57.364 33.333 0.00 0.00 0.00 3.49
1973 2167 9.587772 AGTTAGTCTAGTTATTTGTGTAGCATG 57.412 33.333 0.00 0.00 0.00 4.06
1974 2168 9.367444 GTTAGTCTAGTTATTTGTGTAGCATGT 57.633 33.333 0.00 0.00 0.00 3.21
1975 2169 9.938280 TTAGTCTAGTTATTTGTGTAGCATGTT 57.062 29.630 0.00 0.00 0.00 2.71
1976 2170 8.256611 AGTCTAGTTATTTGTGTAGCATGTTG 57.743 34.615 0.00 0.00 0.00 3.33
1977 2171 6.961554 GTCTAGTTATTTGTGTAGCATGTTGC 59.038 38.462 0.00 0.00 45.46 4.17
1997 2191 2.405690 GCTAAGAAGCGTAATAGCGAGC 59.594 50.000 0.00 0.00 43.00 5.03
1998 2192 2.873133 AAGAAGCGTAATAGCGAGCT 57.127 45.000 2.25 2.25 43.00 4.09
1999 2193 3.984508 AAGAAGCGTAATAGCGAGCTA 57.015 42.857 7.31 7.31 43.00 3.32
2000 2194 3.546002 AGAAGCGTAATAGCGAGCTAG 57.454 47.619 10.71 0.00 43.00 3.42
2001 2195 2.879646 AGAAGCGTAATAGCGAGCTAGT 59.120 45.455 10.71 10.33 43.00 2.57
2002 2196 2.690173 AGCGTAATAGCGAGCTAGTG 57.310 50.000 14.33 1.14 43.00 2.74
2003 2197 1.053811 GCGTAATAGCGAGCTAGTGC 58.946 55.000 14.33 12.03 40.05 4.40
2004 2198 1.599667 GCGTAATAGCGAGCTAGTGCA 60.600 52.381 17.59 0.00 42.74 4.57
2005 2199 2.727777 CGTAATAGCGAGCTAGTGCAA 58.272 47.619 17.59 0.00 42.74 4.08
2006 2200 2.721603 CGTAATAGCGAGCTAGTGCAAG 59.278 50.000 17.59 2.45 42.74 4.01
2007 2201 3.548214 CGTAATAGCGAGCTAGTGCAAGA 60.548 47.826 17.59 0.00 42.74 3.02
2008 2202 3.526931 AATAGCGAGCTAGTGCAAGAA 57.473 42.857 10.71 0.00 42.74 2.52
2009 2203 2.279582 TAGCGAGCTAGTGCAAGAAC 57.720 50.000 0.00 0.00 42.74 3.01
2010 2204 0.734253 AGCGAGCTAGTGCAAGAACG 60.734 55.000 7.69 0.00 42.74 3.95
2011 2205 1.009389 GCGAGCTAGTGCAAGAACGT 61.009 55.000 0.00 0.00 42.74 3.99
2012 2206 1.419374 CGAGCTAGTGCAAGAACGTT 58.581 50.000 0.00 0.00 42.74 3.99
2013 2207 1.387084 CGAGCTAGTGCAAGAACGTTC 59.613 52.381 20.71 20.71 42.74 3.95
2014 2208 1.387084 GAGCTAGTGCAAGAACGTTCG 59.613 52.381 21.87 10.48 42.74 3.95
2015 2209 0.179248 GCTAGTGCAAGAACGTTCGC 60.179 55.000 21.87 19.69 39.41 4.70
2016 2210 1.136690 CTAGTGCAAGAACGTTCGCA 58.863 50.000 21.94 21.94 0.00 5.10
2017 2211 1.125021 CTAGTGCAAGAACGTTCGCAG 59.875 52.381 24.99 18.27 34.49 5.18
2018 2212 1.722507 GTGCAAGAACGTTCGCAGC 60.723 57.895 24.99 25.18 34.49 5.25
2019 2213 1.887242 TGCAAGAACGTTCGCAGCT 60.887 52.632 28.99 11.40 0.00 4.24
2020 2214 1.279840 GCAAGAACGTTCGCAGCTT 59.720 52.632 25.03 12.77 0.00 3.74
2021 2215 0.317020 GCAAGAACGTTCGCAGCTTT 60.317 50.000 25.03 12.17 0.00 3.51
2022 2216 1.859998 GCAAGAACGTTCGCAGCTTTT 60.860 47.619 25.03 11.59 0.00 2.27
2023 2217 2.601266 GCAAGAACGTTCGCAGCTTTTA 60.601 45.455 25.03 0.00 0.00 1.52
2024 2218 2.943843 AGAACGTTCGCAGCTTTTAC 57.056 45.000 21.87 0.00 0.00 2.01
2025 2219 2.206750 AGAACGTTCGCAGCTTTTACA 58.793 42.857 21.87 0.00 0.00 2.41
2026 2220 2.221055 AGAACGTTCGCAGCTTTTACAG 59.779 45.455 21.87 0.00 0.00 2.74
2027 2221 1.578583 ACGTTCGCAGCTTTTACAGT 58.421 45.000 0.00 0.00 0.00 3.55
2028 2222 1.260561 ACGTTCGCAGCTTTTACAGTG 59.739 47.619 0.00 0.00 0.00 3.66
2029 2223 1.674908 GTTCGCAGCTTTTACAGTGC 58.325 50.000 0.00 0.00 0.00 4.40
2030 2224 1.002900 GTTCGCAGCTTTTACAGTGCA 60.003 47.619 0.00 0.00 35.57 4.57
2031 2225 0.867746 TCGCAGCTTTTACAGTGCAG 59.132 50.000 0.00 0.00 35.57 4.41
2032 2226 0.588252 CGCAGCTTTTACAGTGCAGT 59.412 50.000 0.00 0.00 35.57 4.40
2033 2227 1.798223 CGCAGCTTTTACAGTGCAGTA 59.202 47.619 0.00 0.00 35.57 2.74
2034 2228 2.223144 CGCAGCTTTTACAGTGCAGTAA 59.777 45.455 0.00 0.00 35.57 2.24
2035 2229 3.665323 CGCAGCTTTTACAGTGCAGTAAG 60.665 47.826 0.00 0.00 35.57 2.34
2036 2230 3.251004 GCAGCTTTTACAGTGCAGTAAGT 59.749 43.478 0.00 0.00 35.57 2.24
2037 2231 4.451096 GCAGCTTTTACAGTGCAGTAAGTA 59.549 41.667 0.00 0.00 35.57 2.24
2038 2232 5.389935 GCAGCTTTTACAGTGCAGTAAGTAG 60.390 44.000 0.00 0.55 35.57 2.57
2039 2233 4.691216 AGCTTTTACAGTGCAGTAAGTAGC 59.309 41.667 17.81 17.81 40.24 3.58
2040 2234 4.142881 GCTTTTACAGTGCAGTAAGTAGCC 60.143 45.833 16.19 6.42 37.42 3.93
2041 2235 2.933495 TACAGTGCAGTAAGTAGCCG 57.067 50.000 0.00 0.00 0.00 5.52
2042 2236 0.389948 ACAGTGCAGTAAGTAGCCGC 60.390 55.000 0.00 0.00 0.00 6.53
2043 2237 0.108615 CAGTGCAGTAAGTAGCCGCT 60.109 55.000 0.00 0.00 0.00 5.52
2044 2238 0.108615 AGTGCAGTAAGTAGCCGCTG 60.109 55.000 2.16 0.00 0.00 5.18
2045 2239 1.084370 GTGCAGTAAGTAGCCGCTGG 61.084 60.000 2.16 0.00 0.00 4.85
2046 2240 1.254975 TGCAGTAAGTAGCCGCTGGA 61.255 55.000 2.16 0.00 0.00 3.86
2047 2241 0.528684 GCAGTAAGTAGCCGCTGGAG 60.529 60.000 2.16 0.00 0.00 3.86
2048 2242 0.818296 CAGTAAGTAGCCGCTGGAGT 59.182 55.000 2.16 0.00 0.00 3.85
2049 2243 1.204941 CAGTAAGTAGCCGCTGGAGTT 59.795 52.381 2.16 0.00 0.00 3.01
2050 2244 1.900486 AGTAAGTAGCCGCTGGAGTTT 59.100 47.619 2.16 0.00 0.00 2.66
2051 2245 2.302157 AGTAAGTAGCCGCTGGAGTTTT 59.698 45.455 2.16 0.00 0.00 2.43
2052 2246 1.809684 AAGTAGCCGCTGGAGTTTTC 58.190 50.000 2.16 0.00 0.00 2.29
2053 2247 0.977395 AGTAGCCGCTGGAGTTTTCT 59.023 50.000 2.16 0.00 0.00 2.52
2054 2248 1.348036 AGTAGCCGCTGGAGTTTTCTT 59.652 47.619 2.16 0.00 0.00 2.52
2055 2249 1.732809 GTAGCCGCTGGAGTTTTCTTC 59.267 52.381 2.16 0.00 0.00 2.87
2056 2250 0.606673 AGCCGCTGGAGTTTTCTTCC 60.607 55.000 0.00 0.00 0.00 3.46
2057 2251 0.889186 GCCGCTGGAGTTTTCTTCCA 60.889 55.000 0.00 0.00 0.00 3.53
2068 2262 8.760980 TGGAGTTTTCTTCCAGAATTTAAGAA 57.239 30.769 0.00 0.00 37.44 2.52
2069 2263 8.630037 TGGAGTTTTCTTCCAGAATTTAAGAAC 58.370 33.333 0.00 0.00 38.57 3.01
2070 2264 7.803659 GGAGTTTTCTTCCAGAATTTAAGAACG 59.196 37.037 0.00 0.00 38.57 3.95
2071 2265 8.221965 AGTTTTCTTCCAGAATTTAAGAACGT 57.778 30.769 0.00 0.00 38.57 3.99
2072 2266 8.343366 AGTTTTCTTCCAGAATTTAAGAACGTC 58.657 33.333 0.00 0.00 38.57 4.34
2073 2267 7.795482 TTTCTTCCAGAATTTAAGAACGTCA 57.205 32.000 0.00 0.00 38.57 4.35
2074 2268 7.421530 TTCTTCCAGAATTTAAGAACGTCAG 57.578 36.000 0.00 0.00 35.02 3.51
2075 2269 6.755206 TCTTCCAGAATTTAAGAACGTCAGA 58.245 36.000 0.00 0.00 0.00 3.27
2076 2270 7.214381 TCTTCCAGAATTTAAGAACGTCAGAA 58.786 34.615 0.00 0.00 0.00 3.02
2077 2271 7.385205 TCTTCCAGAATTTAAGAACGTCAGAAG 59.615 37.037 0.00 0.00 0.00 2.85
2078 2272 5.932303 TCCAGAATTTAAGAACGTCAGAAGG 59.068 40.000 0.00 0.00 0.00 3.46
2079 2273 5.122396 CCAGAATTTAAGAACGTCAGAAGGG 59.878 44.000 0.00 0.00 0.00 3.95
2080 2274 5.122396 CAGAATTTAAGAACGTCAGAAGGGG 59.878 44.000 0.00 0.00 0.00 4.79
2081 2275 3.412237 TTTAAGAACGTCAGAAGGGGG 57.588 47.619 0.00 0.00 0.00 5.40
2082 2276 2.314071 TAAGAACGTCAGAAGGGGGA 57.686 50.000 0.00 0.00 0.00 4.81
2083 2277 1.657804 AAGAACGTCAGAAGGGGGAT 58.342 50.000 0.00 0.00 0.00 3.85
2084 2278 2.544844 AGAACGTCAGAAGGGGGATA 57.455 50.000 0.00 0.00 0.00 2.59
2085 2279 2.829023 AGAACGTCAGAAGGGGGATAA 58.171 47.619 0.00 0.00 0.00 1.75
2086 2280 3.178865 AGAACGTCAGAAGGGGGATAAA 58.821 45.455 0.00 0.00 0.00 1.40
2087 2281 3.585732 AGAACGTCAGAAGGGGGATAAAA 59.414 43.478 0.00 0.00 0.00 1.52
2088 2282 4.042435 AGAACGTCAGAAGGGGGATAAAAA 59.958 41.667 0.00 0.00 0.00 1.94
2089 2283 4.586306 ACGTCAGAAGGGGGATAAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2090 2284 4.930696 ACGTCAGAAGGGGGATAAAAATT 58.069 39.130 0.00 0.00 0.00 1.82
2091 2285 6.069705 ACGTCAGAAGGGGGATAAAAATTA 57.930 37.500 0.00 0.00 0.00 1.40
2092 2286 6.486941 ACGTCAGAAGGGGGATAAAAATTAA 58.513 36.000 0.00 0.00 0.00 1.40
2093 2287 6.376299 ACGTCAGAAGGGGGATAAAAATTAAC 59.624 38.462 0.00 0.00 0.00 2.01
2094 2288 6.602009 CGTCAGAAGGGGGATAAAAATTAACT 59.398 38.462 0.00 0.00 0.00 2.24
2095 2289 7.415206 CGTCAGAAGGGGGATAAAAATTAACTG 60.415 40.741 0.00 0.00 0.00 3.16
2096 2290 7.396339 GTCAGAAGGGGGATAAAAATTAACTGT 59.604 37.037 0.00 0.00 0.00 3.55
2097 2291 7.953493 TCAGAAGGGGGATAAAAATTAACTGTT 59.047 33.333 0.00 0.00 0.00 3.16
2098 2292 8.593679 CAGAAGGGGGATAAAAATTAACTGTTT 58.406 33.333 0.00 0.00 0.00 2.83
2099 2293 8.593679 AGAAGGGGGATAAAAATTAACTGTTTG 58.406 33.333 0.00 0.00 0.00 2.93
2100 2294 8.499288 AAGGGGGATAAAAATTAACTGTTTGA 57.501 30.769 0.00 0.00 0.00 2.69
2101 2295 8.134202 AGGGGGATAAAAATTAACTGTTTGAG 57.866 34.615 0.00 0.00 0.00 3.02
2102 2296 7.953493 AGGGGGATAAAAATTAACTGTTTGAGA 59.047 33.333 0.00 0.00 0.00 3.27
2103 2297 8.251026 GGGGGATAAAAATTAACTGTTTGAGAG 58.749 37.037 0.00 0.00 0.00 3.20
2104 2298 9.020731 GGGGATAAAAATTAACTGTTTGAGAGA 57.979 33.333 0.00 0.00 0.00 3.10
2113 2307 9.971922 AATTAACTGTTTGAGAGAAAAGGATTG 57.028 29.630 0.00 0.00 0.00 2.67
2114 2308 8.746052 TTAACTGTTTGAGAGAAAAGGATTGA 57.254 30.769 0.00 0.00 0.00 2.57
2115 2309 7.830099 AACTGTTTGAGAGAAAAGGATTGAT 57.170 32.000 0.00 0.00 0.00 2.57
2116 2310 8.924511 AACTGTTTGAGAGAAAAGGATTGATA 57.075 30.769 0.00 0.00 0.00 2.15
2117 2311 9.525826 AACTGTTTGAGAGAAAAGGATTGATAT 57.474 29.630 0.00 0.00 0.00 1.63
2118 2312 9.525826 ACTGTTTGAGAGAAAAGGATTGATATT 57.474 29.630 0.00 0.00 0.00 1.28
2157 2351 6.442513 GCTCTATTAGCCATGTTTTTCACT 57.557 37.500 0.00 0.00 46.25 3.41
2159 2353 6.094048 GCTCTATTAGCCATGTTTTTCACTGA 59.906 38.462 0.00 0.00 46.25 3.41
2163 2357 4.942761 AGCCATGTTTTTCACTGAATGT 57.057 36.364 0.00 0.00 0.00 2.71
2167 2361 6.869913 AGCCATGTTTTTCACTGAATGTTATG 59.130 34.615 0.00 0.00 0.00 1.90
2193 2387 5.014123 ACTTGTAATGGAATCCCTTCTGTCA 59.986 40.000 0.00 0.00 0.00 3.58
2194 2388 5.715439 TGTAATGGAATCCCTTCTGTCAT 57.285 39.130 0.00 0.00 0.00 3.06
2217 2412 6.748333 TGCAATATTCAAGAAGAGAAGTGG 57.252 37.500 0.00 0.00 0.00 4.00
2227 2422 4.260170 AGAAGAGAAGTGGCAGCATAAAG 58.740 43.478 0.00 0.00 0.00 1.85
2244 2439 7.109006 GCATAAAGCATCCCAAAATATTTCG 57.891 36.000 0.10 0.00 44.79 3.46
2250 2491 7.111247 AGCATCCCAAAATATTTCGAATTCA 57.889 32.000 6.22 0.00 0.00 2.57
2253 2494 7.439056 GCATCCCAAAATATTTCGAATTCACAT 59.561 33.333 6.22 0.00 0.00 3.21
2280 2521 5.603750 TCTGGTCAGGCCCATATTATCTAT 58.396 41.667 0.00 0.00 36.04 1.98
2281 2522 5.663106 TCTGGTCAGGCCCATATTATCTATC 59.337 44.000 0.00 0.00 36.04 2.08
2282 2523 5.349690 TGGTCAGGCCCATATTATCTATCA 58.650 41.667 0.00 0.00 36.04 2.15
2283 2524 5.790096 TGGTCAGGCCCATATTATCTATCAA 59.210 40.000 0.00 0.00 36.04 2.57
2284 2525 6.448061 TGGTCAGGCCCATATTATCTATCAAT 59.552 38.462 0.00 0.00 36.04 2.57
2286 2527 8.494433 GGTCAGGCCCATATTATCTATCAATTA 58.506 37.037 0.00 0.00 0.00 1.40
2287 2528 9.553064 GTCAGGCCCATATTATCTATCAATTAG 57.447 37.037 0.00 0.00 0.00 1.73
2339 2705 4.460263 TGGAAACTATGCGCCTTATTCAT 58.540 39.130 4.18 0.00 0.00 2.57
2353 2719 8.030106 GCGCCTTATTCATAGAATTCTAGTACT 58.970 37.037 19.51 0.00 0.00 2.73
2365 2731 6.697892 AGAATTCTAGTACTGCTTATGTTCGC 59.302 38.462 6.06 0.00 0.00 4.70
2371 2737 2.991250 ACTGCTTATGTTCGCTCCATT 58.009 42.857 0.00 0.00 0.00 3.16
2407 2773 4.472496 TGCATTCTGCCATGTACCATAAT 58.528 39.130 0.00 0.00 44.23 1.28
2431 2797 4.310769 GTCCATATGTTAGGCTGCTACTG 58.689 47.826 0.00 0.00 0.00 2.74
2533 2899 9.930158 AAATTTATATGTGTATGTACCACCCTT 57.070 29.630 0.00 0.00 0.00 3.95
2535 2901 7.678207 TTATATGTGTATGTACCACCCTTCA 57.322 36.000 0.00 0.00 0.00 3.02
2628 2994 2.355010 AATGCTCCAGATAGCCCAAC 57.645 50.000 0.00 0.00 42.05 3.77
2642 3017 1.086696 CCCAACAATAGTGAGCCGTG 58.913 55.000 0.00 0.00 0.00 4.94
2709 3084 5.404946 CCATGCCATTAGTCAAAAGAACTG 58.595 41.667 0.00 0.00 0.00 3.16
2810 3747 0.893727 CACTTGGGGTTTCTTCCGGG 60.894 60.000 0.00 0.00 0.00 5.73
2830 3767 8.430573 TCCGGGAATTATATACATCAGAAAGA 57.569 34.615 0.00 0.00 0.00 2.52
2871 3808 8.533569 AGGAGAAAGGAACAAAATCTTAACAA 57.466 30.769 0.00 0.00 0.00 2.83
2890 3829 5.356882 ACAAACATGTAGATTGTTGGACG 57.643 39.130 8.30 0.00 39.87 4.79
2897 3836 5.666969 TGTAGATTGTTGGACGTTTCTTG 57.333 39.130 0.00 0.00 0.00 3.02
2950 3890 6.238759 GGCAGACCATCCTAAATATCACAAAC 60.239 42.308 0.00 0.00 35.26 2.93
2960 3900 8.998814 TCCTAAATATCACAAACTCCCATCTTA 58.001 33.333 0.00 0.00 0.00 2.10
3026 3966 3.447586 TGTTCTGACCATACCTGTCTAGC 59.552 47.826 0.00 0.00 33.83 3.42
3129 4070 7.283127 TGTGAAAGCCATATTGGAAGATAGAAC 59.717 37.037 0.00 0.00 40.96 3.01
3185 4126 3.138468 AGGGCAATTACAATACTCCCTCC 59.862 47.826 0.00 0.00 38.13 4.30
3186 4127 3.139077 GGCAATTACAATACTCCCTCCG 58.861 50.000 0.00 0.00 0.00 4.63
3205 4146 5.510690 CCTCCGTTCCATAATGTAGTGCATA 60.511 44.000 0.00 0.00 36.67 3.14
3243 4184 5.478407 AGTCAAAAACCTCACAAACTTTGG 58.522 37.500 6.47 0.00 34.12 3.28
3266 4207 6.156519 GGCCAAGTTCGTTGAGAAAAATATT 58.843 36.000 0.00 0.00 41.10 1.28
3389 4330 7.771183 TGAACTAGATCAAAGTTTGCAAAGTT 58.229 30.769 23.54 23.54 37.31 2.66
3431 4372 1.409790 TGCACTGCATTATGGAATGGC 59.590 47.619 0.00 0.00 42.44 4.40
3432 4373 1.409790 GCACTGCATTATGGAATGGCA 59.590 47.619 0.00 0.00 42.44 4.92
3433 4374 2.545113 GCACTGCATTATGGAATGGCAG 60.545 50.000 10.10 10.10 44.31 4.85
3434 4375 2.035449 CACTGCATTATGGAATGGCAGG 59.965 50.000 15.34 2.32 43.74 4.85
3435 4376 2.091720 ACTGCATTATGGAATGGCAGGA 60.092 45.455 15.34 0.00 43.74 3.86
3436 4377 2.557056 CTGCATTATGGAATGGCAGGAG 59.443 50.000 0.00 0.00 42.44 3.69
3448 4389 7.168219 TGGAATGGCAGGAGTATTGTATAATC 58.832 38.462 0.00 0.00 0.00 1.75
3491 4433 4.121317 AGTGCATGACAAAAACAATGGTG 58.879 39.130 0.00 0.00 0.00 4.17
3492 4434 3.870419 GTGCATGACAAAAACAATGGTGT 59.130 39.130 0.00 0.00 40.75 4.16
3532 4474 2.513317 TCTTCATCATGGCCATAACCCA 59.487 45.455 20.30 1.70 36.66 4.51
3553 4495 1.417890 GCATGCCCTGTATCTAGGTGT 59.582 52.381 6.36 0.00 36.02 4.16
3589 4531 0.034283 TTGCCAGCCATAGCATGACA 60.034 50.000 0.00 0.00 43.56 3.58
3617 4559 6.064717 GGGATAGCATGTTGGTTAGAGAAAT 58.935 40.000 0.00 0.00 0.00 2.17
3618 4560 6.205658 GGGATAGCATGTTGGTTAGAGAAATC 59.794 42.308 0.00 0.00 0.00 2.17
3619 4561 6.767902 GGATAGCATGTTGGTTAGAGAAATCA 59.232 38.462 0.00 0.00 0.00 2.57
3621 4563 6.506500 AGCATGTTGGTTAGAGAAATCAAG 57.493 37.500 0.00 0.00 38.87 3.02
3623 4565 5.415701 GCATGTTGGTTAGAGAAATCAAGGA 59.584 40.000 0.00 0.00 38.87 3.36
3625 4567 6.877611 TGTTGGTTAGAGAAATCAAGGAAC 57.122 37.500 0.00 0.00 38.87 3.62
3626 4568 6.361433 TGTTGGTTAGAGAAATCAAGGAACA 58.639 36.000 0.00 0.00 38.87 3.18
3764 4708 5.528043 TTATTTTGCAGAGTTTGGAGCAA 57.472 34.783 0.00 0.00 44.36 3.91
3854 4800 3.561725 CAGAAGACAGGTTGGACAGAAAC 59.438 47.826 0.00 0.00 0.00 2.78
3995 4955 6.818142 ACCTTTCATGCTTGGTAAAATATTGC 59.182 34.615 0.00 0.00 0.00 3.56
4150 5111 9.932207 TTGTATCCATTCTTAAACGAGTTAGAA 57.068 29.630 0.00 4.32 0.00 2.10
4151 5112 9.362539 TGTATCCATTCTTAAACGAGTTAGAAC 57.637 33.333 4.02 0.00 0.00 3.01
4271 5234 2.929116 CAGATGAGCATGCTCGCG 59.071 61.111 35.68 22.52 45.48 5.87
4349 5312 4.006319 ACTTTGTCAAAGAGGCTGCTATC 58.994 43.478 28.07 0.00 41.02 2.08
4361 5324 2.289072 GGCTGCTATCGAGGCTATCAAA 60.289 50.000 13.07 0.00 33.29 2.69
4445 5408 3.710209 AGATTTCTCAAGGACAGTGGG 57.290 47.619 0.00 0.00 0.00 4.61
4484 5447 8.258007 CCTGATAAGGAAGTTACTGTTACATCA 58.742 37.037 0.00 1.40 0.00 3.07
4658 5621 1.405391 GCAGTCCCTCTTGAAGAGCTC 60.405 57.143 16.57 5.27 40.98 4.09
4817 5780 1.208052 GAGGTCTATGACAAGCTGGCA 59.792 52.381 0.00 0.00 41.29 4.92
4844 5807 2.880890 GGCGGATCATATATCAATGGCC 59.119 50.000 0.00 0.00 0.00 5.36
5351 6314 1.821332 CCGGATGAAGGCCAAGCTC 60.821 63.158 5.01 0.00 0.00 4.09
5360 6323 0.327591 AGGCCAAGCTCAGGAAGAAG 59.672 55.000 5.01 0.00 0.00 2.85
5370 6333 1.635487 TCAGGAAGAAGTGATTGGGGG 59.365 52.381 0.00 0.00 0.00 5.40
5398 6368 5.334879 GGTTTCGTGTAGCTGTTGATTGATT 60.335 40.000 0.00 0.00 0.00 2.57
5411 6386 8.437742 GCTGTTGATTGATTGTTTGAATAAAGG 58.562 33.333 0.00 0.00 0.00 3.11
5463 6441 3.641437 TGCATGTAACACTTTTCTGGC 57.359 42.857 0.00 0.00 0.00 4.85
5464 6442 2.031245 TGCATGTAACACTTTTCTGGCG 60.031 45.455 0.00 0.00 0.00 5.69
5465 6443 2.225491 GCATGTAACACTTTTCTGGCGA 59.775 45.455 0.00 0.00 0.00 5.54
5496 6474 3.496331 TCTGTATGTCCTGTCTGTGACA 58.504 45.455 0.37 0.37 44.86 3.58
5497 6475 3.255888 TCTGTATGTCCTGTCTGTGACAC 59.744 47.826 0.00 0.00 43.69 3.67
5589 6567 3.123116 GCACGAGTACTAGAACTTTTGCC 59.877 47.826 10.22 0.00 34.13 4.52
5659 6643 2.002586 GTGTCACCACTCCATCAATCG 58.997 52.381 0.00 0.00 38.61 3.34
5713 6720 7.253905 AGCACTTGTAAAATTCTACCTCCTA 57.746 36.000 0.00 0.00 0.00 2.94
5802 6811 3.367292 CCAAATAAATGTGTCAAGCCGCT 60.367 43.478 0.00 0.00 0.00 5.52
5841 6850 1.268992 CCGGTTCCCCTGGTGTCATA 61.269 60.000 0.00 0.00 0.00 2.15
5858 6867 8.892723 TGGTGTCATAATCAGATTGTTACATTC 58.107 33.333 9.40 6.79 0.00 2.67
5875 6884 2.356913 CCACGCACGACATGTCCA 60.357 61.111 20.03 0.00 0.00 4.02
5878 6887 1.080501 ACGCACGACATGTCCAGAG 60.081 57.895 20.03 15.61 0.00 3.35
6001 7013 2.034066 CCTCCACGGCCACATGTT 59.966 61.111 2.24 0.00 0.00 2.71
6002 7014 2.040544 CCTCCACGGCCACATGTTC 61.041 63.158 2.24 0.00 0.00 3.18
6003 7015 1.003355 CTCCACGGCCACATGTTCT 60.003 57.895 2.24 0.00 0.00 3.01
6004 7016 0.606401 CTCCACGGCCACATGTTCTT 60.606 55.000 2.24 0.00 0.00 2.52
6024 7036 3.487120 TCTCCGGTGAAGATAGATCGA 57.513 47.619 3.14 0.00 0.00 3.59
6028 7040 2.287668 CCGGTGAAGATAGATCGACCAC 60.288 54.545 0.00 0.00 0.00 4.16
6029 7041 2.287668 CGGTGAAGATAGATCGACCACC 60.288 54.545 15.13 15.13 39.57 4.61
6030 7042 2.036089 GGTGAAGATAGATCGACCACCC 59.964 54.545 14.60 3.98 38.36 4.61
6031 7043 2.693591 GTGAAGATAGATCGACCACCCA 59.306 50.000 0.00 0.00 0.00 4.51
6032 7044 3.322254 GTGAAGATAGATCGACCACCCAT 59.678 47.826 0.00 0.00 0.00 4.00
6033 7045 3.321968 TGAAGATAGATCGACCACCCATG 59.678 47.826 0.00 0.00 0.00 3.66
6047 7059 1.370810 CCATGGGTTGGGTTGTTGC 59.629 57.895 2.85 0.00 42.33 4.17
6073 7085 1.001378 GTGTGCGCCATGAAAACTCTT 60.001 47.619 4.18 0.00 0.00 2.85
6074 7086 1.680735 TGTGCGCCATGAAAACTCTTT 59.319 42.857 4.18 0.00 0.00 2.52
6142 7164 3.706373 GAGACGGCTGGCTGGGAA 61.706 66.667 5.01 0.00 0.00 3.97
6143 7165 3.249189 AGACGGCTGGCTGGGAAA 61.249 61.111 0.00 0.00 0.00 3.13
6144 7166 3.056328 GACGGCTGGCTGGGAAAC 61.056 66.667 6.36 0.00 0.00 2.78
6148 7170 1.678970 GGCTGGCTGGGAAACGAAT 60.679 57.895 0.00 0.00 0.00 3.34
6239 7261 3.943034 CACCAAACGCGCGACCAA 61.943 61.111 39.36 0.00 0.00 3.67
6277 7299 3.292159 GTTGCCCGGGTTCACACC 61.292 66.667 24.63 3.28 43.37 4.16
6278 7300 3.494254 TTGCCCGGGTTCACACCT 61.494 61.111 24.63 0.00 43.65 4.00
6329 7365 3.146726 ATGCCATGCTGATTGCCGC 62.147 57.895 0.00 0.00 42.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.440826 TGCTAGTTTGTGGAAACCCTAA 57.559 40.909 0.00 0.00 42.25 2.69
224 229 2.117423 CACCCCACCCAAACCCTC 59.883 66.667 0.00 0.00 0.00 4.30
555 602 7.361127 CAGAAATCACATATTTGATCTCAGGC 58.639 38.462 7.70 0.00 35.02 4.85
562 609 6.832384 ACAGAGGCAGAAATCACATATTTGAT 59.168 34.615 0.00 0.00 37.87 2.57
587 634 1.454847 AGCCCAACAAAGCACCGAA 60.455 52.632 0.00 0.00 0.00 4.30
588 635 2.192861 CAGCCCAACAAAGCACCGA 61.193 57.895 0.00 0.00 0.00 4.69
589 636 2.336088 CAGCCCAACAAAGCACCG 59.664 61.111 0.00 0.00 0.00 4.94
590 637 0.825840 TACCAGCCCAACAAAGCACC 60.826 55.000 0.00 0.00 0.00 5.01
591 638 1.036707 TTACCAGCCCAACAAAGCAC 58.963 50.000 0.00 0.00 0.00 4.40
592 639 1.686052 CTTTACCAGCCCAACAAAGCA 59.314 47.619 0.00 0.00 0.00 3.91
593 640 1.000843 CCTTTACCAGCCCAACAAAGC 59.999 52.381 0.00 0.00 0.00 3.51
594 641 2.558359 CTCCTTTACCAGCCCAACAAAG 59.442 50.000 0.00 0.00 0.00 2.77
595 642 2.593026 CTCCTTTACCAGCCCAACAAA 58.407 47.619 0.00 0.00 0.00 2.83
596 643 1.821666 GCTCCTTTACCAGCCCAACAA 60.822 52.381 0.00 0.00 0.00 2.83
597 644 0.251165 GCTCCTTTACCAGCCCAACA 60.251 55.000 0.00 0.00 0.00 3.33
598 645 0.251165 TGCTCCTTTACCAGCCCAAC 60.251 55.000 0.00 0.00 34.47 3.77
599 646 0.704076 ATGCTCCTTTACCAGCCCAA 59.296 50.000 0.00 0.00 34.47 4.12
600 647 0.034186 CATGCTCCTTTACCAGCCCA 60.034 55.000 0.00 0.00 34.47 5.36
601 648 0.753111 CCATGCTCCTTTACCAGCCC 60.753 60.000 0.00 0.00 34.47 5.19
602 649 0.255890 TCCATGCTCCTTTACCAGCC 59.744 55.000 0.00 0.00 34.47 4.85
603 650 1.745653 GTTCCATGCTCCTTTACCAGC 59.254 52.381 0.00 0.00 36.08 4.85
604 651 3.012518 CTGTTCCATGCTCCTTTACCAG 58.987 50.000 0.00 0.00 0.00 4.00
605 652 2.879756 GCTGTTCCATGCTCCTTTACCA 60.880 50.000 0.00 0.00 0.00 3.25
606 653 1.745653 GCTGTTCCATGCTCCTTTACC 59.254 52.381 0.00 0.00 0.00 2.85
607 654 1.745653 GGCTGTTCCATGCTCCTTTAC 59.254 52.381 0.00 0.00 34.01 2.01
608 655 1.340991 GGGCTGTTCCATGCTCCTTTA 60.341 52.381 0.00 0.00 36.21 1.85
609 656 0.613012 GGGCTGTTCCATGCTCCTTT 60.613 55.000 0.00 0.00 36.21 3.11
610 657 1.000396 GGGCTGTTCCATGCTCCTT 60.000 57.895 0.00 0.00 36.21 3.36
611 658 1.792757 TTGGGCTGTTCCATGCTCCT 61.793 55.000 0.00 0.00 36.58 3.69
612 659 1.304381 TTGGGCTGTTCCATGCTCC 60.304 57.895 0.00 0.00 36.58 4.70
613 660 0.895100 TGTTGGGCTGTTCCATGCTC 60.895 55.000 0.00 0.00 36.58 4.26
614 661 0.896940 CTGTTGGGCTGTTCCATGCT 60.897 55.000 0.00 0.00 36.58 3.79
615 662 1.588082 CTGTTGGGCTGTTCCATGC 59.412 57.895 0.00 0.00 36.58 4.06
616 663 2.269978 CCTGTTGGGCTGTTCCATG 58.730 57.895 0.00 0.00 36.58 3.66
617 664 4.850193 CCTGTTGGGCTGTTCCAT 57.150 55.556 0.00 0.00 36.58 3.41
626 673 2.990967 ACAATGCGGCCTGTTGGG 60.991 61.111 0.00 0.00 38.36 4.12
627 674 2.568090 GACAATGCGGCCTGTTGG 59.432 61.111 0.00 0.00 0.00 3.77
628 675 2.176546 CGACAATGCGGCCTGTTG 59.823 61.111 0.00 5.61 0.00 3.33
629 676 2.031919 TCGACAATGCGGCCTGTT 59.968 55.556 0.00 0.00 0.00 3.16
630 677 2.434884 CTCGACAATGCGGCCTGT 60.435 61.111 0.00 0.00 0.00 4.00
631 678 2.434884 ACTCGACAATGCGGCCTG 60.435 61.111 0.00 0.00 0.00 4.85
632 679 2.434884 CACTCGACAATGCGGCCT 60.435 61.111 0.00 0.00 0.00 5.19
633 680 4.166011 GCACTCGACAATGCGGCC 62.166 66.667 0.00 0.00 30.97 6.13
634 681 4.166011 GGCACTCGACAATGCGGC 62.166 66.667 0.00 0.00 43.02 6.53
635 682 2.434884 AGGCACTCGACAATGCGG 60.435 61.111 5.69 0.00 43.02 5.69
643 690 2.031012 CAGCAACCAGGCACTCGA 59.969 61.111 0.00 0.00 34.60 4.04
680 727 2.871096 ATCTGGACGGGTTTTTGCTA 57.129 45.000 0.00 0.00 0.00 3.49
729 776 4.838486 CGTCGGCGAGTGAGCTCC 62.838 72.222 11.20 2.40 41.33 4.70
754 801 1.868519 GCCGTATGTGATTCGAGGTCC 60.869 57.143 0.00 0.00 0.00 4.46
797 844 1.301401 CTTTCGGCTTGGTCGTCCA 60.301 57.895 0.00 0.00 42.66 4.02
798 845 2.677979 GCTTTCGGCTTGGTCGTCC 61.678 63.158 0.00 0.00 38.06 4.79
808 861 2.282180 TGGGGAACTGCTTTCGGC 60.282 61.111 0.00 0.00 42.22 5.54
860 913 0.746923 GGTTAGGGTGAATGACGGGC 60.747 60.000 0.00 0.00 0.00 6.13
886 939 2.034221 GACTGCCAGGTGGGGTTC 59.966 66.667 0.00 0.00 37.04 3.62
888 941 2.930562 GAGACTGCCAGGTGGGGT 60.931 66.667 0.00 0.00 37.04 4.95
987 1043 4.838152 TTCATGAGGCCGCCGAGC 62.838 66.667 3.22 0.00 0.00 5.03
988 1044 1.958205 GATTCATGAGGCCGCCGAG 60.958 63.158 3.22 0.00 0.00 4.63
1018 1074 0.618968 GTGGAGGTGGAGGTGGAGAT 60.619 60.000 0.00 0.00 0.00 2.75
1263 1319 0.037232 AGAAAAAGGGAGAGCGACGG 60.037 55.000 0.00 0.00 0.00 4.79
1296 1352 7.011482 CAGAGGTATGCTAATTTTGACACCTAC 59.989 40.741 0.00 0.00 35.34 3.18
1325 1444 3.689649 AGACAGGAAAATTGGCGATACAC 59.310 43.478 0.00 0.00 0.00 2.90
1327 1446 5.107453 CGATAGACAGGAAAATTGGCGATAC 60.107 44.000 0.00 0.00 39.76 2.24
1331 1450 3.194861 TCGATAGACAGGAAAATTGGCG 58.805 45.455 0.00 0.00 42.67 5.69
1368 1493 2.167900 TCATCTGATCTCCAGTGCACTG 59.832 50.000 35.15 35.15 43.38 3.66
1407 1532 1.080974 CGAAGCAAAAGGCCAGCTG 60.081 57.895 6.78 6.78 46.50 4.24
1483 1614 6.570692 CCTGTGACAAAATACGTCCTACTAT 58.429 40.000 0.00 0.00 32.15 2.12
1484 1615 5.622914 GCCTGTGACAAAATACGTCCTACTA 60.623 44.000 0.00 0.00 32.15 1.82
1485 1616 4.817517 CCTGTGACAAAATACGTCCTACT 58.182 43.478 0.00 0.00 32.15 2.57
1493 1624 3.568538 CAGCTTGCCTGTGACAAAATAC 58.431 45.455 0.00 0.00 36.79 1.89
1538 1669 7.284820 ACCTGAAGTTGTAACTAGCCTAAAAA 58.715 34.615 0.00 0.00 38.57 1.94
1541 1672 6.429521 AACCTGAAGTTGTAACTAGCCTAA 57.570 37.500 0.00 0.00 38.57 2.69
1562 1693 2.748461 TTGACAGTAGCAAACGCAAC 57.252 45.000 0.00 0.00 0.00 4.17
1579 1721 5.587443 TGTTTCTCATCTGAGCATACCATTG 59.413 40.000 2.21 0.00 41.80 2.82
1626 1778 2.626266 CGGCAGTTAGGTTTTCCCTTTT 59.374 45.455 0.00 0.00 42.73 2.27
1648 1800 4.789012 AAATTGCACCCAATACTGTCTG 57.211 40.909 0.00 0.00 40.69 3.51
1654 1806 6.398095 AGAAGCTAAAAATTGCACCCAATAC 58.602 36.000 0.00 0.00 40.69 1.89
1658 1810 4.953940 AAGAAGCTAAAAATTGCACCCA 57.046 36.364 0.00 0.00 0.00 4.51
1659 1811 9.599866 AATATAAAGAAGCTAAAAATTGCACCC 57.400 29.630 0.00 0.00 0.00 4.61
1666 1818 9.301153 CCGCACAAATATAAAGAAGCTAAAAAT 57.699 29.630 0.00 0.00 0.00 1.82
1667 1819 8.301002 ACCGCACAAATATAAAGAAGCTAAAAA 58.699 29.630 0.00 0.00 0.00 1.94
1686 1838 0.179070 TGCAAGTCTACAACCGCACA 60.179 50.000 0.00 0.00 33.22 4.57
1701 1891 1.514678 AATGGCGCGAGAAACTGCAA 61.515 50.000 12.10 0.00 0.00 4.08
1704 1894 0.652592 CCTAATGGCGCGAGAAACTG 59.347 55.000 12.10 0.00 0.00 3.16
1705 1895 3.065575 CCTAATGGCGCGAGAAACT 57.934 52.632 12.10 0.00 0.00 2.66
1716 1906 6.268847 AGACTAACTTCCTATCTGCCTAATGG 59.731 42.308 0.00 0.00 0.00 3.16
1717 1907 7.296628 AGACTAACTTCCTATCTGCCTAATG 57.703 40.000 0.00 0.00 0.00 1.90
1718 1908 8.228905 ACTAGACTAACTTCCTATCTGCCTAAT 58.771 37.037 0.00 0.00 0.00 1.73
1719 1909 7.584532 ACTAGACTAACTTCCTATCTGCCTAA 58.415 38.462 0.00 0.00 0.00 2.69
1720 1910 7.151694 ACTAGACTAACTTCCTATCTGCCTA 57.848 40.000 0.00 0.00 0.00 3.93
1721 1911 6.020881 ACTAGACTAACTTCCTATCTGCCT 57.979 41.667 0.00 0.00 0.00 4.75
1722 1912 6.718522 AACTAGACTAACTTCCTATCTGCC 57.281 41.667 0.00 0.00 0.00 4.85
1730 1920 9.085250 GCTACACAAATAACTAGACTAACTTCC 57.915 37.037 0.00 0.00 0.00 3.46
1772 1963 3.966154 TCTTGCACTAGCTCGCTATTAC 58.034 45.455 0.00 0.00 42.74 1.89
1780 1971 1.387084 CGAACGTTCTTGCACTAGCTC 59.613 52.381 24.80 0.00 42.74 4.09
1809 2000 0.389948 GCGGCTACTTACTGCACTGT 60.390 55.000 0.00 0.00 39.31 3.55
1818 2009 2.565834 AGAAAACTCCAGCGGCTACTTA 59.434 45.455 0.26 0.00 0.00 2.24
1824 2015 0.889186 TGGAAGAAAACTCCAGCGGC 60.889 55.000 0.00 0.00 38.07 6.53
1873 2067 9.971922 CAATCCTTTTCTCTCAAACAGTTAATT 57.028 29.630 0.00 0.00 0.00 1.40
1930 2124 6.268847 AGACTAACTTCCTATCTGCCTAATGG 59.731 42.308 0.00 0.00 0.00 3.16
1931 2125 7.296628 AGACTAACTTCCTATCTGCCTAATG 57.703 40.000 0.00 0.00 0.00 1.90
1932 2126 8.228905 ACTAGACTAACTTCCTATCTGCCTAAT 58.771 37.037 0.00 0.00 0.00 1.73
1933 2127 7.584532 ACTAGACTAACTTCCTATCTGCCTAA 58.415 38.462 0.00 0.00 0.00 2.69
1934 2128 7.151694 ACTAGACTAACTTCCTATCTGCCTA 57.848 40.000 0.00 0.00 0.00 3.93
1935 2129 6.020881 ACTAGACTAACTTCCTATCTGCCT 57.979 41.667 0.00 0.00 0.00 4.75
1936 2130 6.718522 AACTAGACTAACTTCCTATCTGCC 57.281 41.667 0.00 0.00 0.00 4.85
1944 2138 9.085250 GCTACACAAATAACTAGACTAACTTCC 57.915 37.037 0.00 0.00 0.00 3.46
1945 2139 9.635520 TGCTACACAAATAACTAGACTAACTTC 57.364 33.333 0.00 0.00 0.00 3.01
1947 2141 9.587772 CATGCTACACAAATAACTAGACTAACT 57.412 33.333 0.00 0.00 0.00 2.24
1948 2142 9.367444 ACATGCTACACAAATAACTAGACTAAC 57.633 33.333 0.00 0.00 0.00 2.34
1949 2143 9.938280 AACATGCTACACAAATAACTAGACTAA 57.062 29.630 0.00 0.00 0.00 2.24
1950 2144 9.366216 CAACATGCTACACAAATAACTAGACTA 57.634 33.333 0.00 0.00 0.00 2.59
1951 2145 7.148407 GCAACATGCTACACAAATAACTAGACT 60.148 37.037 0.00 0.00 40.96 3.24
1952 2146 6.961554 GCAACATGCTACACAAATAACTAGAC 59.038 38.462 0.00 0.00 40.96 2.59
1953 2147 7.072177 GCAACATGCTACACAAATAACTAGA 57.928 36.000 0.00 0.00 40.96 2.43
1976 2170 2.405690 GCTCGCTATTACGCTTCTTAGC 59.594 50.000 0.00 0.00 44.21 3.09
1977 2171 3.891324 AGCTCGCTATTACGCTTCTTAG 58.109 45.455 0.00 0.00 0.00 2.18
1978 2172 3.984508 AGCTCGCTATTACGCTTCTTA 57.015 42.857 0.00 0.00 0.00 2.10
1979 2173 2.873133 AGCTCGCTATTACGCTTCTT 57.127 45.000 0.00 0.00 0.00 2.52
1980 2174 2.879646 ACTAGCTCGCTATTACGCTTCT 59.120 45.455 0.00 0.00 34.14 2.85
1981 2175 2.974536 CACTAGCTCGCTATTACGCTTC 59.025 50.000 0.00 0.00 34.14 3.86
1982 2176 2.859032 GCACTAGCTCGCTATTACGCTT 60.859 50.000 0.00 0.00 37.91 4.68
1983 2177 1.335142 GCACTAGCTCGCTATTACGCT 60.335 52.381 0.00 0.00 37.91 5.07
1984 2178 1.053811 GCACTAGCTCGCTATTACGC 58.946 55.000 0.00 0.00 37.91 4.42
1985 2179 2.401017 TGCACTAGCTCGCTATTACG 57.599 50.000 0.00 0.00 42.74 3.18
1986 2180 3.966154 TCTTGCACTAGCTCGCTATTAC 58.034 45.455 0.00 0.00 42.74 1.89
1987 2181 4.360563 GTTCTTGCACTAGCTCGCTATTA 58.639 43.478 0.00 0.00 42.74 0.98
1988 2182 3.190874 GTTCTTGCACTAGCTCGCTATT 58.809 45.455 0.00 0.00 42.74 1.73
1989 2183 2.796383 CGTTCTTGCACTAGCTCGCTAT 60.796 50.000 0.00 0.00 42.74 2.97
1990 2184 1.467543 CGTTCTTGCACTAGCTCGCTA 60.468 52.381 0.00 0.00 42.74 4.26
1991 2185 0.734253 CGTTCTTGCACTAGCTCGCT 60.734 55.000 0.00 0.00 42.74 4.93
1992 2186 1.009389 ACGTTCTTGCACTAGCTCGC 61.009 55.000 0.00 0.00 42.74 5.03
1993 2187 1.387084 GAACGTTCTTGCACTAGCTCG 59.613 52.381 20.97 0.00 42.74 5.03
1994 2188 1.387084 CGAACGTTCTTGCACTAGCTC 59.613 52.381 24.80 0.00 42.74 4.09
1995 2189 1.419374 CGAACGTTCTTGCACTAGCT 58.581 50.000 24.80 0.00 42.74 3.32
1996 2190 0.179248 GCGAACGTTCTTGCACTAGC 60.179 55.000 24.80 14.53 42.57 3.42
1997 2191 1.125021 CTGCGAACGTTCTTGCACTAG 59.875 52.381 24.80 12.59 33.12 2.57
1998 2192 1.136690 CTGCGAACGTTCTTGCACTA 58.863 50.000 24.80 6.62 33.12 2.74
1999 2193 1.934463 CTGCGAACGTTCTTGCACT 59.066 52.632 24.80 0.00 33.12 4.40
2000 2194 1.722507 GCTGCGAACGTTCTTGCAC 60.723 57.895 24.80 16.85 33.12 4.57
2001 2195 1.436195 AAGCTGCGAACGTTCTTGCA 61.436 50.000 24.80 24.07 35.75 4.08
2002 2196 0.317020 AAAGCTGCGAACGTTCTTGC 60.317 50.000 24.80 22.70 0.00 4.01
2003 2197 2.105323 AAAAGCTGCGAACGTTCTTG 57.895 45.000 24.80 15.23 0.00 3.02
2004 2198 2.610374 TGTAAAAGCTGCGAACGTTCTT 59.390 40.909 24.80 13.21 0.00 2.52
2005 2199 2.206750 TGTAAAAGCTGCGAACGTTCT 58.793 42.857 24.80 7.15 0.00 3.01
2006 2200 2.033151 ACTGTAAAAGCTGCGAACGTTC 60.033 45.455 18.47 18.47 0.00 3.95
2007 2201 1.937899 ACTGTAAAAGCTGCGAACGTT 59.062 42.857 0.00 0.00 0.00 3.99
2008 2202 1.260561 CACTGTAAAAGCTGCGAACGT 59.739 47.619 0.00 0.00 0.00 3.99
2009 2203 1.937359 CACTGTAAAAGCTGCGAACG 58.063 50.000 0.00 0.00 0.00 3.95
2010 2204 1.002900 TGCACTGTAAAAGCTGCGAAC 60.003 47.619 0.00 0.00 36.37 3.95
2011 2205 1.264020 CTGCACTGTAAAAGCTGCGAA 59.736 47.619 0.00 0.00 36.37 4.70
2012 2206 0.867746 CTGCACTGTAAAAGCTGCGA 59.132 50.000 0.00 0.00 36.37 5.10
2013 2207 0.588252 ACTGCACTGTAAAAGCTGCG 59.412 50.000 0.00 0.00 36.37 5.18
2014 2208 3.251004 ACTTACTGCACTGTAAAAGCTGC 59.749 43.478 0.00 0.00 35.05 5.25
2015 2209 5.389935 GCTACTTACTGCACTGTAAAAGCTG 60.390 44.000 17.20 0.00 37.87 4.24
2016 2210 4.691216 GCTACTTACTGCACTGTAAAAGCT 59.309 41.667 17.20 0.00 37.87 3.74
2017 2211 4.142881 GGCTACTTACTGCACTGTAAAAGC 60.143 45.833 16.67 16.67 38.90 3.51
2018 2212 4.091509 CGGCTACTTACTGCACTGTAAAAG 59.908 45.833 0.84 3.04 32.80 2.27
2019 2213 3.991773 CGGCTACTTACTGCACTGTAAAA 59.008 43.478 0.84 0.00 32.80 1.52
2020 2214 3.581755 CGGCTACTTACTGCACTGTAAA 58.418 45.455 0.84 0.00 32.80 2.01
2021 2215 2.673043 GCGGCTACTTACTGCACTGTAA 60.673 50.000 0.00 0.00 39.31 2.41
2022 2216 1.135199 GCGGCTACTTACTGCACTGTA 60.135 52.381 0.00 0.00 39.31 2.74
2023 2217 0.389948 GCGGCTACTTACTGCACTGT 60.390 55.000 0.00 0.00 39.31 3.55
2024 2218 0.108615 AGCGGCTACTTACTGCACTG 60.109 55.000 0.00 0.00 42.07 3.66
2025 2219 0.108615 CAGCGGCTACTTACTGCACT 60.109 55.000 0.26 0.00 42.07 4.40
2026 2220 1.084370 CCAGCGGCTACTTACTGCAC 61.084 60.000 0.26 0.00 42.07 4.57
2027 2221 1.218047 CCAGCGGCTACTTACTGCA 59.782 57.895 0.26 0.00 42.07 4.41
2028 2222 0.528684 CTCCAGCGGCTACTTACTGC 60.529 60.000 0.26 0.00 39.82 4.40
2029 2223 0.818296 ACTCCAGCGGCTACTTACTG 59.182 55.000 0.26 0.00 0.00 2.74
2030 2224 1.558233 AACTCCAGCGGCTACTTACT 58.442 50.000 0.26 0.00 0.00 2.24
2031 2225 2.381725 AAACTCCAGCGGCTACTTAC 57.618 50.000 0.26 0.00 0.00 2.34
2032 2226 2.565834 AGAAAACTCCAGCGGCTACTTA 59.434 45.455 0.26 0.00 0.00 2.24
2033 2227 1.348036 AGAAAACTCCAGCGGCTACTT 59.652 47.619 0.26 0.00 0.00 2.24
2034 2228 0.977395 AGAAAACTCCAGCGGCTACT 59.023 50.000 0.26 0.00 0.00 2.57
2035 2229 1.732809 GAAGAAAACTCCAGCGGCTAC 59.267 52.381 0.26 0.00 0.00 3.58
2036 2230 1.338769 GGAAGAAAACTCCAGCGGCTA 60.339 52.381 0.26 0.00 32.77 3.93
2037 2231 0.606673 GGAAGAAAACTCCAGCGGCT 60.607 55.000 0.00 0.00 32.77 5.52
2038 2232 0.889186 TGGAAGAAAACTCCAGCGGC 60.889 55.000 0.00 0.00 38.07 6.53
2039 2233 3.322514 TGGAAGAAAACTCCAGCGG 57.677 52.632 0.00 0.00 38.07 5.52
2051 2245 6.755206 TCTGACGTTCTTAAATTCTGGAAGA 58.245 36.000 0.00 0.00 44.68 2.87
2052 2246 7.360438 CCTTCTGACGTTCTTAAATTCTGGAAG 60.360 40.741 0.00 0.00 0.00 3.46
2053 2247 6.426937 CCTTCTGACGTTCTTAAATTCTGGAA 59.573 38.462 0.00 0.00 0.00 3.53
2054 2248 5.932303 CCTTCTGACGTTCTTAAATTCTGGA 59.068 40.000 0.00 0.00 0.00 3.86
2055 2249 5.122396 CCCTTCTGACGTTCTTAAATTCTGG 59.878 44.000 0.00 0.00 0.00 3.86
2056 2250 5.122396 CCCCTTCTGACGTTCTTAAATTCTG 59.878 44.000 0.00 0.00 0.00 3.02
2057 2251 5.246307 CCCCTTCTGACGTTCTTAAATTCT 58.754 41.667 0.00 0.00 0.00 2.40
2058 2252 4.395231 CCCCCTTCTGACGTTCTTAAATTC 59.605 45.833 0.00 0.00 0.00 2.17
2059 2253 4.042435 TCCCCCTTCTGACGTTCTTAAATT 59.958 41.667 0.00 0.00 0.00 1.82
2060 2254 3.585732 TCCCCCTTCTGACGTTCTTAAAT 59.414 43.478 0.00 0.00 0.00 1.40
2061 2255 2.974099 TCCCCCTTCTGACGTTCTTAAA 59.026 45.455 0.00 0.00 0.00 1.52
2062 2256 2.612000 TCCCCCTTCTGACGTTCTTAA 58.388 47.619 0.00 0.00 0.00 1.85
2063 2257 2.314071 TCCCCCTTCTGACGTTCTTA 57.686 50.000 0.00 0.00 0.00 2.10
2064 2258 1.657804 ATCCCCCTTCTGACGTTCTT 58.342 50.000 0.00 0.00 0.00 2.52
2065 2259 2.544844 TATCCCCCTTCTGACGTTCT 57.455 50.000 0.00 0.00 0.00 3.01
2066 2260 3.622166 TTTATCCCCCTTCTGACGTTC 57.378 47.619 0.00 0.00 0.00 3.95
2067 2261 4.376225 TTTTTATCCCCCTTCTGACGTT 57.624 40.909 0.00 0.00 0.00 3.99
2068 2262 4.586306 ATTTTTATCCCCCTTCTGACGT 57.414 40.909 0.00 0.00 0.00 4.34
2069 2263 6.602009 AGTTAATTTTTATCCCCCTTCTGACG 59.398 38.462 0.00 0.00 0.00 4.35
2070 2264 7.396339 ACAGTTAATTTTTATCCCCCTTCTGAC 59.604 37.037 0.00 0.00 0.00 3.51
2071 2265 7.475299 ACAGTTAATTTTTATCCCCCTTCTGA 58.525 34.615 0.00 0.00 0.00 3.27
2072 2266 7.718334 ACAGTTAATTTTTATCCCCCTTCTG 57.282 36.000 0.00 0.00 0.00 3.02
2073 2267 8.593679 CAAACAGTTAATTTTTATCCCCCTTCT 58.406 33.333 0.00 0.00 0.00 2.85
2074 2268 8.590204 TCAAACAGTTAATTTTTATCCCCCTTC 58.410 33.333 0.00 0.00 0.00 3.46
2075 2269 8.499288 TCAAACAGTTAATTTTTATCCCCCTT 57.501 30.769 0.00 0.00 0.00 3.95
2076 2270 7.953493 TCTCAAACAGTTAATTTTTATCCCCCT 59.047 33.333 0.00 0.00 0.00 4.79
2077 2271 8.129496 TCTCAAACAGTTAATTTTTATCCCCC 57.871 34.615 0.00 0.00 0.00 5.40
2078 2272 9.020731 TCTCTCAAACAGTTAATTTTTATCCCC 57.979 33.333 0.00 0.00 0.00 4.81
2087 2281 9.971922 CAATCCTTTTCTCTCAAACAGTTAATT 57.028 29.630 0.00 0.00 0.00 1.40
2088 2282 9.354673 TCAATCCTTTTCTCTCAAACAGTTAAT 57.645 29.630 0.00 0.00 0.00 1.40
2089 2283 8.746052 TCAATCCTTTTCTCTCAAACAGTTAA 57.254 30.769 0.00 0.00 0.00 2.01
2090 2284 8.924511 ATCAATCCTTTTCTCTCAAACAGTTA 57.075 30.769 0.00 0.00 0.00 2.24
2091 2285 7.830099 ATCAATCCTTTTCTCTCAAACAGTT 57.170 32.000 0.00 0.00 0.00 3.16
2092 2286 9.525826 AATATCAATCCTTTTCTCTCAAACAGT 57.474 29.630 0.00 0.00 0.00 3.55
2142 2336 4.942761 ACATTCAGTGAAAAACATGGCT 57.057 36.364 10.14 0.00 0.00 4.75
2159 2353 8.695456 GGGATTCCATTACAAGTTCATAACATT 58.305 33.333 4.80 0.00 0.00 2.71
2163 2357 8.336235 AGAAGGGATTCCATTACAAGTTCATAA 58.664 33.333 1.93 0.00 34.83 1.90
2167 2361 5.946377 ACAGAAGGGATTCCATTACAAGTTC 59.054 40.000 1.93 0.00 34.83 3.01
2193 2387 6.183360 GCCACTTCTCTTCTTGAATATTGCAT 60.183 38.462 0.00 0.00 0.00 3.96
2194 2388 5.124457 GCCACTTCTCTTCTTGAATATTGCA 59.876 40.000 0.00 0.00 0.00 4.08
2217 2412 2.965572 TTTGGGATGCTTTATGCTGC 57.034 45.000 0.00 0.00 43.37 5.25
2227 2422 6.756074 TGTGAATTCGAAATATTTTGGGATGC 59.244 34.615 14.26 8.85 0.00 3.91
2238 2433 7.606073 TGACCAGAAAGATGTGAATTCGAAATA 59.394 33.333 0.00 0.00 0.00 1.40
2239 2434 6.430925 TGACCAGAAAGATGTGAATTCGAAAT 59.569 34.615 0.00 0.00 0.00 2.17
2240 2435 5.762711 TGACCAGAAAGATGTGAATTCGAAA 59.237 36.000 0.00 0.00 0.00 3.46
2242 2437 4.893608 TGACCAGAAAGATGTGAATTCGA 58.106 39.130 0.04 0.00 0.00 3.71
2243 2438 4.093998 CCTGACCAGAAAGATGTGAATTCG 59.906 45.833 0.04 0.00 0.00 3.34
2244 2439 4.142513 GCCTGACCAGAAAGATGTGAATTC 60.143 45.833 0.00 0.00 0.00 2.17
2250 2491 0.329596 GGGCCTGACCAGAAAGATGT 59.670 55.000 0.84 0.00 42.05 3.06
2253 2494 1.965414 TATGGGCCTGACCAGAAAGA 58.035 50.000 4.53 0.00 45.20 2.52
2328 2694 9.347934 CAGTACTAGAATTCTATGAATAAGGCG 57.652 37.037 15.47 3.02 0.00 5.52
2339 2705 7.861372 GCGAACATAAGCAGTACTAGAATTCTA 59.139 37.037 14.42 14.42 0.00 2.10
2353 2719 2.984562 TGAATGGAGCGAACATAAGCA 58.015 42.857 0.00 0.00 35.48 3.91
2365 2731 7.741027 ATGCAGAGTATAAACATGAATGGAG 57.259 36.000 0.00 0.00 0.00 3.86
2407 2773 2.126882 AGCAGCCTAACATATGGACCA 58.873 47.619 7.80 0.00 0.00 4.02
2431 2797 3.801114 AGCTGTGGAAAACTGGAAAAC 57.199 42.857 0.00 0.00 0.00 2.43
2568 2934 2.811431 TGCAAGGACAAAATGGACGTAG 59.189 45.455 0.00 0.00 0.00 3.51
2628 2994 1.202533 CCCCTACACGGCTCACTATTG 60.203 57.143 0.00 0.00 0.00 1.90
2654 3029 2.678336 CCACGCCAAAATAGAAGTCCTC 59.322 50.000 0.00 0.00 0.00 3.71
2655 3030 2.039879 ACCACGCCAAAATAGAAGTCCT 59.960 45.455 0.00 0.00 0.00 3.85
2709 3084 6.203723 CCTATCTGCCTAAAACTCATTACAGC 59.796 42.308 0.00 0.00 0.00 4.40
2830 3767 8.977412 TCCTTTCTCCTAAATTTGTTTTGTTCT 58.023 29.630 0.00 0.00 0.00 3.01
2868 3805 4.819630 ACGTCCAACAATCTACATGTTTGT 59.180 37.500 2.30 6.08 38.90 2.83
2871 3808 5.763204 AGAAACGTCCAACAATCTACATGTT 59.237 36.000 2.30 0.00 41.50 2.71
2937 3877 9.613428 CAGTAAGATGGGAGTTTGTGATATTTA 57.387 33.333 0.00 0.00 0.00 1.40
2950 3890 2.432510 GGACTGACCAGTAAGATGGGAG 59.567 54.545 2.23 0.00 45.25 4.30
2960 3900 5.030147 TGAGTAATAATGGGACTGACCAGT 58.970 41.667 1.78 1.78 45.20 4.00
3129 4070 3.363970 CGAATTTGACCGGAACTCAACAG 60.364 47.826 9.46 0.00 0.00 3.16
3167 4108 4.814771 GGAACGGAGGGAGTATTGTAATTG 59.185 45.833 0.00 0.00 0.00 2.32
3185 4126 8.932945 ATCTATATGCACTACATTATGGAACG 57.067 34.615 0.00 0.00 40.38 3.95
3218 4159 6.426633 CCAAAGTTTGTGAGGTTTTTGACTTT 59.573 34.615 14.36 0.00 36.76 2.66
3219 4160 5.931724 CCAAAGTTTGTGAGGTTTTTGACTT 59.068 36.000 14.36 0.00 0.00 3.01
3221 4162 4.092821 GCCAAAGTTTGTGAGGTTTTTGAC 59.907 41.667 14.36 0.00 0.00 3.18
3222 4163 4.249661 GCCAAAGTTTGTGAGGTTTTTGA 58.750 39.130 14.36 0.00 0.00 2.69
3223 4164 3.373748 GGCCAAAGTTTGTGAGGTTTTTG 59.626 43.478 14.36 0.00 0.00 2.44
3224 4165 3.008485 TGGCCAAAGTTTGTGAGGTTTTT 59.992 39.130 0.61 0.00 0.00 1.94
3225 4166 2.569404 TGGCCAAAGTTTGTGAGGTTTT 59.431 40.909 0.61 0.00 0.00 2.43
3243 4184 7.637709 AAATATTTTTCTCAACGAACTTGGC 57.362 32.000 0.00 0.00 0.00 4.52
3365 4306 8.534778 CAAACTTTGCAAACTTTGATCTAGTTC 58.465 33.333 26.92 0.00 34.88 3.01
3370 4311 6.633856 AGTCAAACTTTGCAAACTTTGATCT 58.366 32.000 31.56 27.24 35.08 2.75
3411 4352 1.409790 GCCATTCCATAATGCAGTGCA 59.590 47.619 22.22 22.22 44.86 4.57
3412 4353 1.409790 TGCCATTCCATAATGCAGTGC 59.590 47.619 8.58 8.58 41.06 4.40
3413 4354 2.035449 CCTGCCATTCCATAATGCAGTG 59.965 50.000 0.00 0.00 41.09 3.66
3414 4355 2.091720 TCCTGCCATTCCATAATGCAGT 60.092 45.455 8.75 0.00 41.09 4.40
3415 4356 2.557056 CTCCTGCCATTCCATAATGCAG 59.443 50.000 0.00 0.00 41.06 4.41
3416 4357 2.091720 ACTCCTGCCATTCCATAATGCA 60.092 45.455 0.00 0.00 41.06 3.96
3417 4358 2.590821 ACTCCTGCCATTCCATAATGC 58.409 47.619 0.00 0.00 41.06 3.56
3418 4359 5.771666 ACAATACTCCTGCCATTCCATAATG 59.228 40.000 0.00 0.00 41.90 1.90
3419 4360 5.957132 ACAATACTCCTGCCATTCCATAAT 58.043 37.500 0.00 0.00 0.00 1.28
3420 4361 5.387113 ACAATACTCCTGCCATTCCATAA 57.613 39.130 0.00 0.00 0.00 1.90
3421 4362 6.702449 ATACAATACTCCTGCCATTCCATA 57.298 37.500 0.00 0.00 0.00 2.74
3422 4363 3.959495 ACAATACTCCTGCCATTCCAT 57.041 42.857 0.00 0.00 0.00 3.41
3423 4364 6.508030 TTATACAATACTCCTGCCATTCCA 57.492 37.500 0.00 0.00 0.00 3.53
3424 4365 7.398024 AGATTATACAATACTCCTGCCATTCC 58.602 38.462 0.00 0.00 0.00 3.01
3425 4366 9.593134 CTAGATTATACAATACTCCTGCCATTC 57.407 37.037 0.00 0.00 0.00 2.67
3426 4367 8.543774 CCTAGATTATACAATACTCCTGCCATT 58.456 37.037 0.00 0.00 0.00 3.16
3427 4368 7.126421 CCCTAGATTATACAATACTCCTGCCAT 59.874 40.741 0.00 0.00 0.00 4.40
3428 4369 6.440647 CCCTAGATTATACAATACTCCTGCCA 59.559 42.308 0.00 0.00 0.00 4.92
3429 4370 6.630638 GCCCTAGATTATACAATACTCCTGCC 60.631 46.154 0.00 0.00 0.00 4.85
3430 4371 6.155393 AGCCCTAGATTATACAATACTCCTGC 59.845 42.308 0.00 0.00 0.00 4.85
3431 4372 7.726033 AGCCCTAGATTATACAATACTCCTG 57.274 40.000 0.00 0.00 0.00 3.86
3432 4373 9.839185 TTTAGCCCTAGATTATACAATACTCCT 57.161 33.333 0.00 0.00 0.00 3.69
3448 4389 3.476552 TCATGCCGATTTTTAGCCCTAG 58.523 45.455 0.00 0.00 0.00 3.02
3491 4433 4.058817 AGAAGGACGATCACAAAAGTGAC 58.941 43.478 0.00 0.00 36.05 3.67
3492 4434 4.336889 AGAAGGACGATCACAAAAGTGA 57.663 40.909 0.33 0.33 37.79 3.41
3505 4447 1.303309 GGCCATGATGAAGAAGGACG 58.697 55.000 0.00 0.00 0.00 4.79
3511 4453 2.513317 TGGGTTATGGCCATGATGAAGA 59.487 45.455 29.04 2.75 0.00 2.87
3532 4474 1.696336 CACCTAGATACAGGGCATGCT 59.304 52.381 18.92 0.00 40.29 3.79
3578 4520 2.945080 ATCCCTGGTGTCATGCTATG 57.055 50.000 0.00 0.00 0.00 2.23
3579 4521 2.304180 GCTATCCCTGGTGTCATGCTAT 59.696 50.000 0.00 0.00 0.00 2.97
3580 4522 1.694150 GCTATCCCTGGTGTCATGCTA 59.306 52.381 0.00 0.00 0.00 3.49
3581 4523 0.471617 GCTATCCCTGGTGTCATGCT 59.528 55.000 0.00 0.00 0.00 3.79
3582 4524 0.181114 TGCTATCCCTGGTGTCATGC 59.819 55.000 0.00 0.00 0.00 4.06
3589 4531 1.298953 ACCAACATGCTATCCCTGGT 58.701 50.000 0.00 0.00 32.31 4.00
4177 5140 9.713740 CATAAGAGATTAAATCACAAGCTCAAC 57.286 33.333 3.52 0.00 40.14 3.18
4250 5213 0.595825 CGAGCATGCTCATCTGCGTA 60.596 55.000 38.97 0.00 43.17 4.42
4253 5216 2.632541 GCGAGCATGCTCATCTGC 59.367 61.111 38.97 31.04 42.86 4.26
4271 5234 3.429410 GGTTTATTGCTCCATGCTTCACC 60.429 47.826 0.00 0.00 43.37 4.02
4361 5324 4.226427 TGCATACTGATTCTTTCCAGCT 57.774 40.909 0.00 0.00 33.90 4.24
4445 5408 3.993081 CCTTATCAGGATCGATCTGCAAC 59.007 47.826 23.96 7.86 44.19 4.17
4484 5447 1.952367 GCTATTGCTTCTGTGCACCCT 60.952 52.381 15.69 0.00 43.20 4.34
4658 5621 0.037882 TCTTCGAGACTGCAGCCTTG 60.038 55.000 15.27 12.85 0.00 3.61
4664 5627 0.750249 TGGTGTTCTTCGAGACTGCA 59.250 50.000 0.00 0.00 0.00 4.41
4817 5780 6.544931 CCATTGATATATGATCCGCCTCAAAT 59.455 38.462 0.00 0.00 0.00 2.32
4844 5807 5.337410 CCTCTCATACATGCCAGGAATAGAG 60.337 48.000 0.00 0.00 31.52 2.43
5351 6314 2.134789 CCCCCAATCACTTCTTCCTG 57.865 55.000 0.00 0.00 0.00 3.86
5370 6333 2.047560 AGCTACACGAAACCGCCC 60.048 61.111 0.00 0.00 0.00 6.13
5374 6344 3.496884 TCAATCAACAGCTACACGAAACC 59.503 43.478 0.00 0.00 0.00 3.27
5398 6368 2.562298 CAGGCAGGCCTTTATTCAAACA 59.438 45.455 10.79 0.00 45.70 2.83
5411 6386 1.301558 CGGATCAGATCAGGCAGGC 60.302 63.158 12.66 0.00 0.00 4.85
5463 6441 1.268896 ACATACAGATAACCGCCGTCG 60.269 52.381 0.00 0.00 0.00 5.12
5464 6442 2.391879 GACATACAGATAACCGCCGTC 58.608 52.381 0.00 0.00 0.00 4.79
5465 6443 1.068127 GGACATACAGATAACCGCCGT 59.932 52.381 0.00 0.00 0.00 5.68
5496 6474 2.693069 CAAGGACGCAAGAGATGAAGT 58.307 47.619 0.00 0.00 43.62 3.01
5497 6475 1.396301 GCAAGGACGCAAGAGATGAAG 59.604 52.381 0.00 0.00 43.62 3.02
5568 6546 3.364023 CGGCAAAAGTTCTAGTACTCGTG 59.636 47.826 0.00 5.46 0.00 4.35
5617 6601 2.034221 GGTGAAAAGGCCCGAGCT 59.966 61.111 0.00 0.00 39.73 4.09
5659 6643 0.997932 CACTCTGCTGCGATCACTTC 59.002 55.000 0.00 0.00 0.00 3.01
5802 6811 2.137523 GTGTCGCGGAAGTAAAAGGAA 58.862 47.619 6.13 0.00 0.00 3.36
5841 6850 4.699735 TGCGTGGAATGTAACAATCTGATT 59.300 37.500 0.00 0.00 0.00 2.57
5858 6867 2.356913 TGGACATGTCGTGCGTGG 60.357 61.111 19.33 0.00 39.19 4.94
5875 6884 2.315386 GCGGGCGACGTTTTTCTCT 61.315 57.895 0.00 0.00 46.52 3.10
5878 6887 2.426261 GTGCGGGCGACGTTTTTC 60.426 61.111 0.00 0.00 46.52 2.29
6002 7014 3.815962 TCGATCTATCTTCACCGGAGAAG 59.184 47.826 29.43 29.43 44.96 2.85
6003 7015 3.564644 GTCGATCTATCTTCACCGGAGAA 59.435 47.826 9.46 12.20 0.00 2.87
6004 7016 3.139850 GTCGATCTATCTTCACCGGAGA 58.860 50.000 9.46 1.33 0.00 3.71
6030 7042 0.758123 AAGCAACAACCCAACCCATG 59.242 50.000 0.00 0.00 0.00 3.66
6031 7043 1.047801 GAAGCAACAACCCAACCCAT 58.952 50.000 0.00 0.00 0.00 4.00
6032 7044 0.032615 AGAAGCAACAACCCAACCCA 60.033 50.000 0.00 0.00 0.00 4.51
6033 7045 1.119684 AAGAAGCAACAACCCAACCC 58.880 50.000 0.00 0.00 0.00 4.11
6034 7046 1.480545 ACAAGAAGCAACAACCCAACC 59.519 47.619 0.00 0.00 0.00 3.77
6035 7047 2.094234 ACACAAGAAGCAACAACCCAAC 60.094 45.455 0.00 0.00 0.00 3.77
6036 7048 2.094286 CACACAAGAAGCAACAACCCAA 60.094 45.455 0.00 0.00 0.00 4.12
6047 7059 0.592637 TTCATGGCGCACACAAGAAG 59.407 50.000 10.83 0.00 0.00 2.85
6132 7154 0.391130 TCGATTCGTTTCCCAGCCAG 60.391 55.000 5.89 0.00 0.00 4.85
6140 7162 3.766913 CGTCGTTTGATTCGATTCGTTTC 59.233 43.478 5.89 5.19 39.45 2.78
6141 7163 3.426191 TCGTCGTTTGATTCGATTCGTTT 59.574 39.130 5.89 0.00 39.45 3.60
6142 7164 2.981805 TCGTCGTTTGATTCGATTCGTT 59.018 40.909 5.89 0.00 39.45 3.85
6143 7165 2.587956 TCGTCGTTTGATTCGATTCGT 58.412 42.857 5.89 0.00 39.45 3.85
6144 7166 3.818385 ATCGTCGTTTGATTCGATTCG 57.182 42.857 0.00 0.00 39.46 3.34
6148 7170 4.261349 CGTTCTTATCGTCGTTTGATTCGA 59.739 41.667 0.00 0.00 36.77 3.71
6227 7249 0.110373 GAGAAAATTGGTCGCGCGTT 60.110 50.000 30.98 14.95 0.00 4.84
6238 7260 2.695147 GGATTGGCATCGGGAGAAAATT 59.305 45.455 0.00 0.00 45.37 1.82
6239 7261 2.310538 GGATTGGCATCGGGAGAAAAT 58.689 47.619 0.00 0.00 45.37 1.82
6329 7365 0.179113 GCGGGAGAGAGAGAAGCAAG 60.179 60.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.