Multiple sequence alignment - TraesCS5D01G243000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G243000 chr5D 100.000 8540 0 0 1 8540 351338178 351329639 0.000000e+00 15771.0
1 TraesCS5D01G243000 chr5D 82.828 99 14 3 2206 2302 450579637 450579734 1.530000e-12 86.1
2 TraesCS5D01G243000 chr5D 95.918 49 2 0 1869 1917 373835131 373835083 7.110000e-11 80.5
3 TraesCS5D01G243000 chr5D 92.308 52 3 1 1862 1912 40190748 40190799 1.190000e-08 73.1
4 TraesCS5D01G243000 chr5A 95.477 2830 82 6 4909 7704 451726541 451723724 0.000000e+00 4475.0
5 TraesCS5D01G243000 chr5A 93.042 1466 64 13 2025 3486 451729306 451727875 0.000000e+00 2108.0
6 TraesCS5D01G243000 chr5A 94.037 1308 51 11 3591 4894 451727878 451726594 0.000000e+00 1958.0
7 TraesCS5D01G243000 chr5A 94.072 1029 31 11 867 1882 451730683 451729672 0.000000e+00 1535.0
8 TraesCS5D01G243000 chr5A 91.771 717 42 10 7785 8493 451723725 451723018 0.000000e+00 981.0
9 TraesCS5D01G243000 chr5A 98.165 109 2 0 1919 2027 451729572 451729464 3.150000e-44 191.0
10 TraesCS5D01G243000 chr5A 94.872 78 3 1 2237 2314 117379189 117379113 4.190000e-23 121.0
11 TraesCS5D01G243000 chr5B 93.977 2806 94 20 4909 7704 412447947 412445207 0.000000e+00 4176.0
12 TraesCS5D01G243000 chr5B 95.549 1303 53 4 2569 3867 412450289 412448988 0.000000e+00 2080.0
13 TraesCS5D01G243000 chr5B 95.432 1007 36 6 867 1871 412451969 412450971 0.000000e+00 1596.0
14 TraesCS5D01G243000 chr5B 91.327 980 45 15 3922 4893 412448978 412448031 0.000000e+00 1303.0
15 TraesCS5D01G243000 chr5B 91.413 757 38 8 7785 8540 412445208 412444478 0.000000e+00 1013.0
16 TraesCS5D01G243000 chr5B 92.937 623 29 7 1928 2547 412450970 412450360 0.000000e+00 893.0
17 TraesCS5D01G243000 chr5B 92.063 63 5 0 1869 1931 373875666 373875604 1.180000e-13 89.8
18 TraesCS5D01G243000 chr3D 93.743 863 45 2 1 863 18336509 18337362 0.000000e+00 1286.0
19 TraesCS5D01G243000 chr3D 95.745 47 2 0 1865 1911 61804527 61804573 9.190000e-10 76.8
20 TraesCS5D01G243000 chr3D 92.157 51 4 0 1861 1911 81366172 81366122 1.190000e-08 73.1
21 TraesCS5D01G243000 chr3D 88.333 60 6 1 1850 1909 613125393 613125335 4.280000e-08 71.3
22 TraesCS5D01G243000 chr4D 93.287 864 49 4 1 863 98455166 98454311 0.000000e+00 1266.0
23 TraesCS5D01G243000 chr4D 95.918 49 1 1 1861 1909 70639623 70639670 2.560000e-10 78.7
24 TraesCS5D01G243000 chr4D 95.833 48 2 0 1862 1909 313572315 313572362 2.560000e-10 78.7
25 TraesCS5D01G243000 chr4D 90.741 54 5 0 2535 2588 397158924 397158977 1.190000e-08 73.1
26 TraesCS5D01G243000 chr4D 91.837 49 4 0 1861 1909 455894243 455894195 1.540000e-07 69.4
27 TraesCS5D01G243000 chr4D 97.222 36 1 0 2557 2592 282196959 282196994 2.570000e-05 62.1
28 TraesCS5D01G243000 chr4D 92.500 40 1 2 1867 1906 14985573 14985610 1.000000e-03 56.5
29 TraesCS5D01G243000 chr6B 92.708 864 52 3 1 863 695820090 695820943 0.000000e+00 1236.0
30 TraesCS5D01G243000 chr6B 90.520 865 70 10 1 862 129441253 129442108 0.000000e+00 1133.0
31 TraesCS5D01G243000 chr6B 82.677 127 20 2 2182 2307 23210189 23210064 2.520000e-20 111.0
32 TraesCS5D01G243000 chr6B 93.651 63 4 0 1869 1931 273665364 273665302 2.540000e-15 95.3
33 TraesCS5D01G243000 chr6B 90.476 63 6 0 1869 1931 668385916 668385978 5.490000e-12 84.2
34 TraesCS5D01G243000 chr6B 89.796 49 3 2 2543 2589 13651207 13651255 2.570000e-05 62.1
35 TraesCS5D01G243000 chr1D 92.121 863 54 5 1 861 25697735 25698585 0.000000e+00 1205.0
36 TraesCS5D01G243000 chr1D 97.619 42 0 1 1869 1910 484022583 484022543 4.280000e-08 71.3
37 TraesCS5D01G243000 chr1D 95.122 41 2 0 2557 2597 87661065 87661025 1.990000e-06 65.8
38 TraesCS5D01G243000 chr1D 93.182 44 3 0 1866 1909 318113545 318113588 1.990000e-06 65.8
39 TraesCS5D01G243000 chr1D 89.583 48 4 1 1869 1916 331283834 331283880 9.260000e-05 60.2
40 TraesCS5D01G243000 chr1D 96.875 32 0 1 1911 1942 99458485 99458515 1.500000e-02 52.8
41 TraesCS5D01G243000 chr2B 91.908 865 56 9 1 862 790232519 790231666 0.000000e+00 1197.0
42 TraesCS5D01G243000 chr2B 90.476 861 71 8 3 861 245743018 245742167 0.000000e+00 1125.0
43 TraesCS5D01G243000 chr2B 88.288 111 9 4 7679 7787 160691423 160691315 6.960000e-26 130.0
44 TraesCS5D01G243000 chr2B 93.750 64 4 0 1869 1932 79851688 79851625 7.060000e-16 97.1
45 TraesCS5D01G243000 chr2B 90.909 44 2 1 2552 2593 486584443 486584400 3.330000e-04 58.4
46 TraesCS5D01G243000 chr3B 90.520 865 71 8 1 863 37261117 37260262 0.000000e+00 1133.0
47 TraesCS5D01G243000 chr3B 95.238 63 3 0 1869 1931 745983108 745983170 5.450000e-17 100.0
48 TraesCS5D01G243000 chr3B 93.651 63 4 0 1869 1931 391081821 391081883 2.540000e-15 95.3
49 TraesCS5D01G243000 chr3B 93.333 60 4 0 1869 1928 90696206 90696265 1.180000e-13 89.8
50 TraesCS5D01G243000 chr7B 90.394 864 71 9 1 863 48452058 48452910 0.000000e+00 1125.0
51 TraesCS5D01G243000 chr7B 94.505 91 3 2 7699 7787 533547852 533547762 1.160000e-28 139.0
52 TraesCS5D01G243000 chr7B 87.288 118 10 4 7673 7787 538846847 538846962 6.960000e-26 130.0
53 TraesCS5D01G243000 chr7B 95.238 63 3 0 1869 1931 355483054 355482992 5.450000e-17 100.0
54 TraesCS5D01G243000 chr7B 93.651 63 4 0 1869 1931 289577676 289577738 2.540000e-15 95.3
55 TraesCS5D01G243000 chr7B 88.571 70 2 2 1868 1931 734074704 734074773 7.110000e-11 80.5
56 TraesCS5D01G243000 chr2A 82.840 169 24 4 2155 2321 59070572 59070407 6.910000e-31 147.0
57 TraesCS5D01G243000 chr2A 89.815 108 8 3 7703 7807 71206602 71206709 1.500000e-27 135.0
58 TraesCS5D01G243000 chr2A 89.815 108 8 3 7703 7807 71259232 71259339 1.500000e-27 135.0
59 TraesCS5D01G243000 chr2D 93.684 95 4 2 7700 7792 325745456 325745362 3.210000e-29 141.0
60 TraesCS5D01G243000 chr6A 91.262 103 7 1 7693 7795 127215306 127215406 1.160000e-28 139.0
61 TraesCS5D01G243000 chr3A 91.000 100 7 1 7696 7795 278353555 278353458 5.380000e-27 134.0
62 TraesCS5D01G243000 chr3A 89.041 73 5 3 2237 2307 640752833 640752762 4.250000e-13 87.9
63 TraesCS5D01G243000 chr3A 89.130 46 4 1 2545 2589 163623623 163623578 1.000000e-03 56.5
64 TraesCS5D01G243000 chr4A 87.611 113 11 3 7688 7797 590946979 590947091 2.500000e-25 128.0
65 TraesCS5D01G243000 chr4A 88.889 63 6 1 1869 1931 647138612 647138551 9.190000e-10 76.8
66 TraesCS5D01G243000 chr4A 81.111 90 17 0 2221 2310 593340999 593340910 1.190000e-08 73.1
67 TraesCS5D01G243000 chr4B 92.063 63 5 0 1869 1931 167058364 167058426 1.180000e-13 89.8
68 TraesCS5D01G243000 chr4B 100.000 41 0 0 1869 1909 672320583 672320623 9.190000e-10 76.8
69 TraesCS5D01G243000 chr4B 93.750 48 3 0 1862 1909 390663583 390663630 1.190000e-08 73.1
70 TraesCS5D01G243000 chr1B 92.063 63 5 0 1869 1931 206750047 206750109 1.180000e-13 89.8
71 TraesCS5D01G243000 chr1B 90.476 63 6 0 1869 1931 111586857 111586919 5.490000e-12 84.2
72 TraesCS5D01G243000 chr1B 94.737 38 2 0 2557 2594 548535487 548535450 9.260000e-05 60.2
73 TraesCS5D01G243000 chr7D 97.872 47 1 0 1865 1911 550842004 550842050 1.980000e-11 82.4
74 TraesCS5D01G243000 chr7D 97.778 45 1 0 1865 1909 226690434 226690390 2.560000e-10 78.7
75 TraesCS5D01G243000 chr7D 89.362 47 3 2 2561 2607 108173804 108173848 3.330000e-04 58.4
76 TraesCS5D01G243000 chr7D 94.737 38 1 1 1904 1940 137017719 137017682 3.330000e-04 58.4
77 TraesCS5D01G243000 chr7D 100.000 28 0 0 1912 1939 180683267 180683240 1.500000e-02 52.8
78 TraesCS5D01G243000 chr7A 89.231 65 7 0 2221 2285 443962401 443962465 1.980000e-11 82.4
79 TraesCS5D01G243000 chr6D 95.745 47 2 0 1865 1911 363038074 363038120 9.190000e-10 76.8
80 TraesCS5D01G243000 chr6D 97.674 43 1 0 1869 1911 157587410 157587452 3.310000e-09 75.0
81 TraesCS5D01G243000 chr6D 97.561 41 0 1 1869 1909 466045837 466045876 1.540000e-07 69.4
82 TraesCS5D01G243000 chr6D 94.872 39 1 1 1865 1903 142148711 142148748 9.260000e-05 60.2
83 TraesCS5D01G243000 chr6D 92.683 41 3 0 1869 1909 412183810 412183850 9.260000e-05 60.2
84 TraesCS5D01G243000 chr6D 100.000 30 0 0 1880 1909 316502624 316502595 1.000000e-03 56.5
85 TraesCS5D01G243000 chr6D 100.000 30 0 0 1867 1896 446137948 446137919 1.000000e-03 56.5
86 TraesCS5D01G243000 chr6D 100.000 28 0 0 1912 1939 326984242 326984269 1.500000e-02 52.8
87 TraesCS5D01G243000 chr6D 100.000 28 0 0 1911 1938 363881679 363881652 1.500000e-02 52.8
88 TraesCS5D01G243000 chr6D 100.000 28 0 0 1867 1894 443846541 443846568 1.500000e-02 52.8
89 TraesCS5D01G243000 chr1A 97.674 43 1 0 1867 1909 245527739 245527697 3.310000e-09 75.0
90 TraesCS5D01G243000 chr1A 100.000 28 0 0 1911 1938 298639779 298639752 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G243000 chr5D 351329639 351338178 8539 True 15771.000000 15771 100.000000 1 8540 1 chr5D.!!$R1 8539
1 TraesCS5D01G243000 chr5A 451723018 451730683 7665 True 1874.666667 4475 94.427333 867 8493 6 chr5A.!!$R2 7626
2 TraesCS5D01G243000 chr5B 412444478 412451969 7491 True 1843.500000 4176 93.439167 867 8540 6 chr5B.!!$R2 7673
3 TraesCS5D01G243000 chr3D 18336509 18337362 853 False 1286.000000 1286 93.743000 1 863 1 chr3D.!!$F1 862
4 TraesCS5D01G243000 chr4D 98454311 98455166 855 True 1266.000000 1266 93.287000 1 863 1 chr4D.!!$R1 862
5 TraesCS5D01G243000 chr6B 695820090 695820943 853 False 1236.000000 1236 92.708000 1 863 1 chr6B.!!$F4 862
6 TraesCS5D01G243000 chr6B 129441253 129442108 855 False 1133.000000 1133 90.520000 1 862 1 chr6B.!!$F2 861
7 TraesCS5D01G243000 chr1D 25697735 25698585 850 False 1205.000000 1205 92.121000 1 861 1 chr1D.!!$F1 860
8 TraesCS5D01G243000 chr2B 790231666 790232519 853 True 1197.000000 1197 91.908000 1 862 1 chr2B.!!$R5 861
9 TraesCS5D01G243000 chr2B 245742167 245743018 851 True 1125.000000 1125 90.476000 3 861 1 chr2B.!!$R3 858
10 TraesCS5D01G243000 chr3B 37260262 37261117 855 True 1133.000000 1133 90.520000 1 863 1 chr3B.!!$R1 862
11 TraesCS5D01G243000 chr7B 48452058 48452910 852 False 1125.000000 1125 90.394000 1 863 1 chr7B.!!$F1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 679 0.886043 TTAGGTGCTGCACTGCTGTG 60.886 55.000 29.54 18.54 46.37 3.66 F
1882 1902 0.178995 CCTAGTACTCCCTCCGTCCC 60.179 65.000 0.00 0.00 0.00 4.46 F
1883 1903 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37 F
2287 2532 0.835543 CAAATGCCAACCCCTCCCAA 60.836 55.000 0.00 0.00 0.00 4.12 F
3160 3459 0.107410 ACACGCACTCAAAGGTTCCA 60.107 50.000 0.00 0.00 0.00 3.53 F
3173 3472 0.531974 GGTTCCACTTCTCGTGCACA 60.532 55.000 18.64 3.15 42.42 4.57 F
3914 4217 0.694444 TTCCTAGTGATGGCCTCCCC 60.694 60.000 3.32 0.00 0.00 4.81 F
3942 4245 1.069513 TGTTACTGTGTTCGGGAGTGG 59.930 52.381 0.00 0.00 0.00 4.00 F
4196 4499 1.293924 CTCTTCCCGATCATGTGTGC 58.706 55.000 0.00 0.00 0.00 4.57 F
6298 6693 1.710244 TGTCACTCCATGTTCCCCAAT 59.290 47.619 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 1933 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.00 0.00 2.74 R
2945 3243 0.526524 TGAACCGGCGCAACAAAAAG 60.527 50.000 10.83 0.00 0.00 2.27 R
2957 3255 0.940126 GCACAGCATAGATGAACCGG 59.060 55.000 0.00 0.00 0.00 5.28 R
3929 4232 0.889186 ATGTTGCCACTCCCGAACAC 60.889 55.000 0.00 0.00 31.41 3.32 R
4943 5322 1.136828 ACCTTTCCATATAGGCGGCA 58.863 50.000 13.08 0.00 37.29 5.69 R
5640 6019 1.925255 TGAAGCAATCCTGGATTCCCT 59.075 47.619 18.87 14.58 28.87 4.20 R
6062 6457 2.217745 TGGTACGTGCACCATCCCA 61.218 57.895 12.15 9.56 43.76 4.37 R
6326 6721 4.689612 AACCAAACTGAGTCTAGCTTCA 57.310 40.909 0.00 0.00 0.00 3.02 R
6525 6920 3.004315 CGTAAGTTTGAAATGTGTGGGCT 59.996 43.478 0.00 0.00 0.00 5.19 R
8227 8655 0.174389 ACAGCAGCAGTACATCTCCG 59.826 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.721000 AGAATCTCAACATCTCCTTCTCACT 59.279 40.000 0.00 0.00 0.00 3.41
313 317 1.496857 TCCTCCATCACAACACCCAAA 59.503 47.619 0.00 0.00 0.00 3.28
376 380 4.228210 TCCACCTAATCTTGAGCAAATCCT 59.772 41.667 0.00 0.00 0.00 3.24
489 494 1.077828 TCAGATCTGAGAGGGGTGTGT 59.922 52.381 21.67 0.00 34.14 3.72
633 638 4.730081 CGATAGGCGCTGCACTTA 57.270 55.556 7.64 0.00 0.00 2.24
674 679 0.886043 TTAGGTGCTGCACTGCTGTG 60.886 55.000 29.54 18.54 46.37 3.66
683 688 3.492353 ACTGCTGTGTGTGGGGCT 61.492 61.111 0.00 0.00 0.00 5.19
731 736 1.141019 GGATGTGCGACGCCTAAGA 59.859 57.895 18.69 0.00 0.00 2.10
837 844 5.049474 CAGGTCAGTTCGTGATTTGATTTCA 60.049 40.000 0.00 0.00 37.56 2.69
841 848 3.188460 AGTTCGTGATTTGATTTCACCCG 59.812 43.478 0.00 0.00 40.29 5.28
842 849 2.080693 TCGTGATTTGATTTCACCCGG 58.919 47.619 0.00 0.00 40.29 5.73
863 870 6.292389 CGGAGGTCAAATATGTGATTTCTC 57.708 41.667 0.00 7.00 0.00 2.87
864 871 6.051717 CGGAGGTCAAATATGTGATTTCTCT 58.948 40.000 16.53 5.29 0.00 3.10
865 872 6.201806 CGGAGGTCAAATATGTGATTTCTCTC 59.798 42.308 16.53 11.11 0.00 3.20
885 892 1.614903 CAACAGCAGAAGCCCATTTCA 59.385 47.619 0.00 0.00 43.56 2.69
886 893 1.999648 ACAGCAGAAGCCCATTTCAA 58.000 45.000 0.00 0.00 43.56 2.69
898 905 2.362077 CCCATTTCAATCGTCCCCATTC 59.638 50.000 0.00 0.00 0.00 2.67
1407 1417 2.943978 GCAGTACCCCGTGCTCTGT 61.944 63.158 0.00 0.00 36.71 3.41
1562 1572 5.659440 AACACCGAGATTAATTTTGGCAT 57.341 34.783 11.43 0.00 0.00 4.40
1638 1648 8.426881 TTGTTATTTTTACCTTTCAAAGTGCC 57.573 30.769 0.00 0.00 0.00 5.01
1743 1759 4.971282 TGAGAGGTTTGATATCCTGGTGAT 59.029 41.667 0.00 0.00 37.49 3.06
1753 1769 1.548081 TCCTGGTGATGCAAATGTGG 58.452 50.000 0.00 0.00 0.00 4.17
1760 1776 2.045524 TGATGCAAATGTGGGGTTTGT 58.954 42.857 0.00 0.00 38.49 2.83
1763 1779 1.556911 TGCAAATGTGGGGTTTGTTGT 59.443 42.857 0.00 0.00 38.49 3.32
1857 1873 1.276622 TCTTGACTTGCTCCTACCCC 58.723 55.000 0.00 0.00 0.00 4.95
1882 1902 0.178995 CCTAGTACTCCCTCCGTCCC 60.179 65.000 0.00 0.00 0.00 4.46
1883 1903 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
1884 1904 1.145325 CTAGTACTCCCTCCGTCCCAT 59.855 57.143 0.00 0.00 0.00 4.00
1889 1909 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1890 1910 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1891 1911 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1892 1912 5.600749 ACTCCCTCCGTCCCATAATATAAT 58.399 41.667 0.00 0.00 0.00 1.28
1893 1913 6.748969 ACTCCCTCCGTCCCATAATATAATA 58.251 40.000 0.00 0.00 0.00 0.98
1894 1914 6.839657 ACTCCCTCCGTCCCATAATATAATAG 59.160 42.308 0.00 0.00 0.00 1.73
1895 1915 5.601313 TCCCTCCGTCCCATAATATAATAGC 59.399 44.000 0.00 0.00 0.00 2.97
1896 1916 5.509163 CCCTCCGTCCCATAATATAATAGCG 60.509 48.000 0.00 0.00 0.00 4.26
1897 1917 5.068723 CCTCCGTCCCATAATATAATAGCGT 59.931 44.000 0.00 0.00 0.00 5.07
1898 1918 6.406624 CCTCCGTCCCATAATATAATAGCGTT 60.407 42.308 0.00 0.00 0.00 4.84
1899 1919 6.938507 TCCGTCCCATAATATAATAGCGTTT 58.061 36.000 0.00 0.00 0.00 3.60
1900 1920 7.388437 TCCGTCCCATAATATAATAGCGTTTT 58.612 34.615 0.00 0.00 0.00 2.43
1901 1921 7.879160 TCCGTCCCATAATATAATAGCGTTTTT 59.121 33.333 0.00 0.00 0.00 1.94
1902 1922 7.960738 CCGTCCCATAATATAATAGCGTTTTTG 59.039 37.037 0.00 0.00 0.00 2.44
1903 1923 8.714179 CGTCCCATAATATAATAGCGTTTTTGA 58.286 33.333 0.00 0.00 0.00 2.69
1904 1924 9.821662 GTCCCATAATATAATAGCGTTTTTGAC 57.178 33.333 0.00 0.00 0.00 3.18
1906 1926 9.607285 CCCATAATATAATAGCGTTTTTGACAC 57.393 33.333 0.00 0.00 0.00 3.67
1917 1937 7.303634 AGCGTTTTTGACACTAGTATTATGG 57.696 36.000 0.00 0.00 0.00 2.74
1986 2069 9.281371 GTTACCTTAGAATTACCAGAAGTTTGT 57.719 33.333 0.00 0.00 0.00 2.83
1987 2070 9.856162 TTACCTTAGAATTACCAGAAGTTTGTT 57.144 29.630 0.00 0.00 0.00 2.83
2082 2325 9.979578 GATGTGCCATAAATTATTGGTAATGAA 57.020 29.630 8.05 0.00 31.03 2.57
2163 2407 2.243221 AGCTGGTAGGAGATGGCAAATT 59.757 45.455 0.00 0.00 0.00 1.82
2233 2478 3.705604 CGTTTGTGAAGAAACTGGCAAT 58.294 40.909 2.15 0.00 34.26 3.56
2235 2480 3.624326 TTGTGAAGAAACTGGCAATCG 57.376 42.857 0.00 0.00 0.00 3.34
2250 2495 4.457603 TGGCAATCGCATACAACTAAACTT 59.542 37.500 0.00 0.00 41.24 2.66
2262 2507 9.988350 CATACAACTAAACTTGCGATCTAAAAT 57.012 29.630 0.00 0.00 0.00 1.82
2287 2532 0.835543 CAAATGCCAACCCCTCCCAA 60.836 55.000 0.00 0.00 0.00 4.12
2296 2541 1.670083 CCCCTCCCAACGAACGTTC 60.670 63.158 18.47 18.47 36.00 3.95
2403 2649 6.985188 TCTTGCTGTATTGTTCTTGTATCC 57.015 37.500 0.00 0.00 0.00 2.59
2480 2728 8.475639 TCAAATCGAAGGCTAGTAAAGATACTT 58.524 33.333 0.00 0.00 42.39 2.24
2527 2775 7.804614 TTTTTATACTTTATGCACTTTGCCG 57.195 32.000 0.00 0.00 44.23 5.69
2547 2795 2.873472 CGACTCCGCACTAGAGAATACT 59.127 50.000 0.00 0.00 35.27 2.12
2548 2796 3.059461 CGACTCCGCACTAGAGAATACTC 60.059 52.174 0.00 0.00 42.90 2.59
2549 2797 3.215975 ACTCCGCACTAGAGAATACTCC 58.784 50.000 0.00 0.00 43.53 3.85
2551 2799 2.175069 TCCGCACTAGAGAATACTCCCT 59.825 50.000 0.00 0.00 43.53 4.20
2552 2800 2.554893 CCGCACTAGAGAATACTCCCTC 59.445 54.545 0.00 0.00 43.53 4.30
2553 2801 3.482436 CGCACTAGAGAATACTCCCTCT 58.518 50.000 0.00 0.00 43.53 3.69
2554 2802 3.252215 CGCACTAGAGAATACTCCCTCTG 59.748 52.174 0.00 0.00 43.53 3.35
2555 2803 4.211920 GCACTAGAGAATACTCCCTCTGT 58.788 47.826 0.00 0.00 43.53 3.41
2556 2804 5.378332 GCACTAGAGAATACTCCCTCTGTA 58.622 45.833 0.00 0.00 43.53 2.74
2557 2805 5.239963 GCACTAGAGAATACTCCCTCTGTAC 59.760 48.000 0.00 0.00 43.53 2.90
2558 2806 5.467399 CACTAGAGAATACTCCCTCTGTACG 59.533 48.000 0.00 0.00 43.53 3.67
2559 2807 4.774660 AGAGAATACTCCCTCTGTACGA 57.225 45.455 0.00 0.00 43.53 3.43
2563 2811 5.697067 AGAATACTCCCTCTGTACGATCTT 58.303 41.667 0.00 0.00 0.00 2.40
2564 2812 6.839454 AGAATACTCCCTCTGTACGATCTTA 58.161 40.000 0.00 0.00 0.00 2.10
2565 2813 7.463431 AGAATACTCCCTCTGTACGATCTTAT 58.537 38.462 0.00 0.00 0.00 1.73
2566 2814 8.604184 AGAATACTCCCTCTGTACGATCTTATA 58.396 37.037 0.00 0.00 0.00 0.98
2567 2815 9.398538 GAATACTCCCTCTGTACGATCTTATAT 57.601 37.037 0.00 0.00 0.00 0.86
2568 2816 9.756571 AATACTCCCTCTGTACGATCTTATATT 57.243 33.333 0.00 0.00 0.00 1.28
2569 2817 9.756571 ATACTCCCTCTGTACGATCTTATATTT 57.243 33.333 0.00 0.00 0.00 1.40
2570 2818 8.113173 ACTCCCTCTGTACGATCTTATATTTC 57.887 38.462 0.00 0.00 0.00 2.17
2571 2819 7.945664 ACTCCCTCTGTACGATCTTATATTTCT 59.054 37.037 0.00 0.00 0.00 2.52
2572 2820 8.707796 TCCCTCTGTACGATCTTATATTTCTT 57.292 34.615 0.00 0.00 0.00 2.52
2573 2821 9.144298 TCCCTCTGTACGATCTTATATTTCTTT 57.856 33.333 0.00 0.00 0.00 2.52
2625 2922 5.170748 CACTTGCTAAATCATTTTGGTCCC 58.829 41.667 0.00 0.00 0.00 4.46
2698 2996 8.046708 TCAGATTACAAAAGCTAAAGCCTATCA 58.953 33.333 0.00 0.00 43.38 2.15
2870 3168 4.084328 GCTGATCGGGTCTCAAATATTTCG 60.084 45.833 3.14 0.00 0.00 3.46
2957 3255 2.220824 GGTGGATTTCTTTTTGTTGCGC 59.779 45.455 0.00 0.00 0.00 6.09
3010 3309 6.015434 ACTGTGACTGAAGTTTTTCTTTGGTT 60.015 34.615 0.00 0.00 36.40 3.67
3037 3336 4.422840 TGTTTTGCAGCATTATTGGATCG 58.577 39.130 0.00 0.00 0.00 3.69
3058 3357 8.877779 GGATCGAACAAGGATGATATTCTTATG 58.122 37.037 0.00 0.00 0.00 1.90
3159 3458 0.586802 GACACGCACTCAAAGGTTCC 59.413 55.000 0.00 0.00 0.00 3.62
3160 3459 0.107410 ACACGCACTCAAAGGTTCCA 60.107 50.000 0.00 0.00 0.00 3.53
3169 3468 2.802816 CTCAAAGGTTCCACTTCTCGTG 59.197 50.000 0.00 0.00 43.41 4.35
3173 3472 0.531974 GGTTCCACTTCTCGTGCACA 60.532 55.000 18.64 3.15 42.42 4.57
3200 3499 9.574458 CTATCTGTATTATTCATAGTTGGTCCG 57.426 37.037 0.00 0.00 0.00 4.79
3213 3512 2.335316 TGGTCCGCTGTTTGTTACTT 57.665 45.000 0.00 0.00 0.00 2.24
3220 3519 4.276183 TCCGCTGTTTGTTACTTATGCAAA 59.724 37.500 0.00 0.00 0.00 3.68
3333 3632 1.560611 TGTGGAGCATCATCATGGACA 59.439 47.619 0.00 0.00 36.25 4.02
3500 3799 4.054671 GCACCTGTTCTCTAGATATGCAC 58.945 47.826 0.00 0.00 0.00 4.57
3517 3816 4.495911 TGCACGCATTATCTTCACAAAA 57.504 36.364 0.00 0.00 0.00 2.44
3522 3821 6.345250 GCACGCATTATCTTCACAAAATATGC 60.345 38.462 0.00 0.00 0.00 3.14
3536 3835 6.974048 CACAAAATATGCAATGAATCCTTCGA 59.026 34.615 0.00 0.00 0.00 3.71
3596 3895 0.921896 ACCATAAGCCCAGCTGTCAT 59.078 50.000 13.81 0.00 39.62 3.06
3604 3903 2.232941 AGCCCAGCTGTCATGAAAAATG 59.767 45.455 13.81 0.00 37.57 2.32
3607 3906 4.240096 CCCAGCTGTCATGAAAAATGTTC 58.760 43.478 13.81 0.00 0.00 3.18
3784 4083 6.481984 CAGAAAACTCAGACTTTGTTCAGTC 58.518 40.000 0.00 0.00 43.26 3.51
3819 4118 8.483758 TCTACCTGAAAATATCCAAGTAAGTCC 58.516 37.037 0.00 0.00 0.00 3.85
3914 4217 0.694444 TTCCTAGTGATGGCCTCCCC 60.694 60.000 3.32 0.00 0.00 4.81
3919 4222 2.534011 TGATGGCCTCCCCCACAA 60.534 61.111 3.32 0.00 37.79 3.33
3929 4232 2.356125 CCTCCCCCACAATCTGTTACTG 60.356 54.545 0.00 0.00 0.00 2.74
3942 4245 1.069513 TGTTACTGTGTTCGGGAGTGG 59.930 52.381 0.00 0.00 0.00 4.00
3984 4287 8.958119 TGTTGTTCACTAAATTTACTCAGTCT 57.042 30.769 0.00 0.00 0.00 3.24
3995 4298 5.339008 TTTACTCAGTCTGCGGTCATATT 57.661 39.130 0.00 0.00 0.00 1.28
4081 4384 3.437741 TGGCTATTCATATGCTGCAATCG 59.562 43.478 6.36 0.00 0.00 3.34
4196 4499 1.293924 CTCTTCCCGATCATGTGTGC 58.706 55.000 0.00 0.00 0.00 4.57
4232 4535 7.072454 TCTGGCCCAAATTATGACTACTATTCT 59.928 37.037 0.00 0.00 0.00 2.40
4276 4579 6.625532 ATCATCACCTGTGGTATGCATATA 57.374 37.500 10.16 0.00 32.11 0.86
4278 4581 7.019656 TCATCACCTGTGGTATGCATATATT 57.980 36.000 10.16 0.00 32.11 1.28
4320 4623 6.126863 TCATTGTTTCATCCTTCTACACCT 57.873 37.500 0.00 0.00 0.00 4.00
4322 4625 7.004086 TCATTGTTTCATCCTTCTACACCTTT 58.996 34.615 0.00 0.00 0.00 3.11
4476 4781 4.919774 TTGGTTGAGATAACTGGCCTTA 57.080 40.909 3.32 0.00 0.00 2.69
4606 4911 2.365617 TGAGTGTCACTGAAGGTCTTCC 59.634 50.000 11.04 0.00 38.77 3.46
4624 4929 7.824779 AGGTCTTCCTTTATAAAGTAGCACAAG 59.175 37.037 20.99 13.04 42.12 3.16
4625 4930 7.606839 GGTCTTCCTTTATAAAGTAGCACAAGT 59.393 37.037 20.99 0.00 34.20 3.16
4626 4931 8.443937 GTCTTCCTTTATAAAGTAGCACAAGTG 58.556 37.037 20.99 4.88 34.20 3.16
4627 4932 6.737254 TCCTTTATAAAGTAGCACAAGTGC 57.263 37.500 20.99 16.97 44.18 4.40
4628 4933 6.234920 TCCTTTATAAAGTAGCACAAGTGCA 58.765 36.000 25.17 10.04 45.19 4.57
4629 4934 6.148811 TCCTTTATAAAGTAGCACAAGTGCAC 59.851 38.462 25.17 19.52 45.19 4.57
4630 4935 6.072728 CCTTTATAAAGTAGCACAAGTGCACA 60.073 38.462 25.17 11.10 45.19 4.57
4631 4936 7.521423 CCTTTATAAAGTAGCACAAGTGCACAA 60.521 37.037 25.17 9.04 45.19 3.33
4653 4958 7.861872 CACAACAGATGAATGATGTTACAAACA 59.138 33.333 0.00 0.00 46.94 2.83
4697 5002 2.334977 TGGAAGCCACCTTTCACTCTA 58.665 47.619 0.00 0.00 31.53 2.43
4812 5123 6.591001 TGTGAATTCAGTGCTATGCCTTATA 58.409 36.000 8.80 0.00 0.00 0.98
4894 5205 7.012799 TGCACAGTTGTTCATTAGTACATTTCA 59.987 33.333 0.00 0.00 0.00 2.69
4895 5206 7.860373 GCACAGTTGTTCATTAGTACATTTCAA 59.140 33.333 0.00 0.00 0.00 2.69
4896 5207 9.729023 CACAGTTGTTCATTAGTACATTTCAAA 57.271 29.630 0.00 0.00 0.00 2.69
4943 5322 5.736951 TTGGCTTATGTAATTGTTGCCTT 57.263 34.783 0.00 0.00 39.57 4.35
5040 5419 8.621532 AAAGTTCAACATTATTCAGTAGCTGA 57.378 30.769 0.00 0.00 38.87 4.26
5085 5464 4.513198 TGGTAATTAACAAGCAACCTGC 57.487 40.909 0.00 0.00 45.46 4.85
5640 6019 2.013400 TCACGAAAGCACAAGCAAGAA 58.987 42.857 0.00 0.00 45.49 2.52
5768 6147 6.590292 GCATATGCTGATGTTAGGTACGTATT 59.410 38.462 20.64 0.00 38.21 1.89
6000 6395 5.278315 CCTTTAGAGTTTTTACAGGCCACAC 60.278 44.000 5.01 0.00 0.00 3.82
6298 6693 1.710244 TGTCACTCCATGTTCCCCAAT 59.290 47.619 0.00 0.00 0.00 3.16
6326 6721 7.472334 AGATGTCCATGCTAAAGTTTCAAAT 57.528 32.000 0.00 0.00 0.00 2.32
6525 6920 1.068895 CTGCCAATCACAAACCAAGCA 59.931 47.619 0.00 0.00 0.00 3.91
6563 6958 4.430908 ACTTACGTGCAGAATAACCTAGC 58.569 43.478 0.00 0.00 0.00 3.42
6602 6997 3.673746 TCAGTGCTGTTTTCTTTGTCG 57.326 42.857 0.00 0.00 0.00 4.35
6747 7142 6.463614 GGTGATCTCCAAGATGTGCTATTACT 60.464 42.308 8.97 0.00 34.53 2.24
6879 7274 6.294473 ACCTCTTACAGCCATTGATTATGAG 58.706 40.000 0.00 0.00 36.26 2.90
7083 7478 4.333926 GCCAAACTTGCTAGTCCTCATTAG 59.666 45.833 0.07 0.00 31.99 1.73
7085 7480 5.940470 CCAAACTTGCTAGTCCTCATTAGTT 59.060 40.000 0.07 0.00 31.99 2.24
7242 7637 9.988815 ACCTGCATCTGTACTAATCTAAATTAG 57.011 33.333 0.00 4.11 46.62 1.73
7428 7840 2.239400 ACTCAATATGATCCGGAGCGA 58.761 47.619 16.16 5.84 0.00 4.93
7513 7925 0.394565 AGCAACGGAGACTGCTTTCT 59.605 50.000 0.00 0.00 44.84 2.52
7627 8048 0.321564 TCGCCAGTCCTCCATGTTTG 60.322 55.000 0.00 0.00 0.00 2.93
7629 8050 1.679944 CGCCAGTCCTCCATGTTTGAT 60.680 52.381 0.00 0.00 0.00 2.57
7702 8123 8.667592 ACTCCTATTCTACTTTCTTACCAAGT 57.332 34.615 0.00 0.00 38.13 3.16
7703 8124 9.765295 ACTCCTATTCTACTTTCTTACCAAGTA 57.235 33.333 0.00 0.00 35.95 2.24
7705 8126 9.765295 TCCTATTCTACTTTCTTACCAAGTACT 57.235 33.333 0.00 0.00 35.95 2.73
7708 8129 6.847421 TCTACTTTCTTACCAAGTACTCCC 57.153 41.667 0.00 0.00 35.95 4.30
7709 8130 6.559429 TCTACTTTCTTACCAAGTACTCCCT 58.441 40.000 0.00 0.00 35.95 4.20
7710 8131 5.741962 ACTTTCTTACCAAGTACTCCCTC 57.258 43.478 0.00 0.00 32.48 4.30
7711 8132 4.531339 ACTTTCTTACCAAGTACTCCCTCC 59.469 45.833 0.00 0.00 32.48 4.30
7712 8133 2.731572 TCTTACCAAGTACTCCCTCCG 58.268 52.381 0.00 0.00 0.00 4.63
7713 8134 2.042162 TCTTACCAAGTACTCCCTCCGT 59.958 50.000 0.00 0.00 0.00 4.69
7714 8135 2.610438 TACCAAGTACTCCCTCCGTT 57.390 50.000 0.00 0.00 0.00 4.44
7715 8136 1.264295 ACCAAGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
7716 8137 0.535797 CCAAGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
7717 8138 1.263356 CAAGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
7718 8139 1.621814 CAAGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
7719 8140 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
7720 8141 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
7721 8142 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
7722 8143 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
7723 8144 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7724 8145 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7725 8146 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7726 8147 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7727 8148 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7728 8149 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7729 8150 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
7730 8151 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
7731 8152 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
7732 8153 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
7733 8154 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
7734 8155 4.457603 CGTTCCAAAATAGATGACCCAACA 59.542 41.667 0.00 0.00 0.00 3.33
7735 8156 5.125417 CGTTCCAAAATAGATGACCCAACAT 59.875 40.000 0.00 0.00 0.00 2.71
7736 8157 6.350110 CGTTCCAAAATAGATGACCCAACATT 60.350 38.462 0.00 0.00 0.00 2.71
7737 8158 6.528537 TCCAAAATAGATGACCCAACATTG 57.471 37.500 0.00 0.00 0.00 2.82
7738 8159 6.015918 TCCAAAATAGATGACCCAACATTGT 58.984 36.000 0.00 0.00 0.00 2.71
7739 8160 7.178573 TCCAAAATAGATGACCCAACATTGTA 58.821 34.615 0.00 0.00 0.00 2.41
7740 8161 7.122055 TCCAAAATAGATGACCCAACATTGTAC 59.878 37.037 0.00 0.00 0.00 2.90
7741 8162 7.122650 CCAAAATAGATGACCCAACATTGTACT 59.877 37.037 0.00 0.00 0.00 2.73
7742 8163 9.173021 CAAAATAGATGACCCAACATTGTACTA 57.827 33.333 0.00 0.00 0.00 1.82
7743 8164 9.747898 AAAATAGATGACCCAACATTGTACTAA 57.252 29.630 0.00 0.00 0.00 2.24
7744 8165 8.732746 AATAGATGACCCAACATTGTACTAAC 57.267 34.615 0.00 0.00 0.00 2.34
7745 8166 6.374417 AGATGACCCAACATTGTACTAACT 57.626 37.500 0.00 0.00 0.00 2.24
7746 8167 6.779860 AGATGACCCAACATTGTACTAACTT 58.220 36.000 0.00 0.00 0.00 2.66
7747 8168 7.231467 AGATGACCCAACATTGTACTAACTTT 58.769 34.615 0.00 0.00 0.00 2.66
7748 8169 6.627395 TGACCCAACATTGTACTAACTTTG 57.373 37.500 0.00 0.00 0.00 2.77
7749 8170 6.123651 TGACCCAACATTGTACTAACTTTGT 58.876 36.000 0.00 0.00 0.00 2.83
7750 8171 7.281098 TGACCCAACATTGTACTAACTTTGTA 58.719 34.615 0.00 0.00 0.00 2.41
7751 8172 7.227116 TGACCCAACATTGTACTAACTTTGTAC 59.773 37.037 6.58 6.58 40.27 2.90
7752 8173 7.055378 ACCCAACATTGTACTAACTTTGTACA 58.945 34.615 10.91 10.91 45.56 2.90
7773 8194 8.783093 TGTACAAAGTTGAGTCATCTATTTTGG 58.217 33.333 14.35 0.00 40.00 3.28
7774 8195 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
7775 8196 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
7776 8197 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
7777 8198 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
7778 8199 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
7779 8200 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
7780 8201 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
7782 8203 5.178797 AGTCATCTATTTTGGAACGGAGTG 58.821 41.667 0.00 0.00 45.00 3.51
7783 8204 5.046591 AGTCATCTATTTTGGAACGGAGTGA 60.047 40.000 0.00 0.00 45.00 3.41
7855 8276 5.541953 TGATGGATTGATTCTCTCATCGT 57.458 39.130 0.00 0.00 35.20 3.73
7858 8279 6.825213 TGATGGATTGATTCTCTCATCGTTTT 59.175 34.615 0.00 0.00 35.20 2.43
7859 8280 6.426980 TGGATTGATTCTCTCATCGTTTTG 57.573 37.500 0.00 0.00 32.72 2.44
7873 8294 2.948979 TCGTTTTGTTGCAGATGTCCTT 59.051 40.909 0.00 0.00 0.00 3.36
7958 8380 0.617413 CCTGATCTCTTGCCACCACT 59.383 55.000 0.00 0.00 0.00 4.00
7992 8414 3.625764 CCACGGTTCTACCAATTGTATGG 59.374 47.826 4.43 0.00 46.38 2.74
8022 8444 3.251479 TGGATCATCTCAGTTGAACCG 57.749 47.619 7.37 0.00 38.51 4.44
8028 8450 5.400066 TCATCTCAGTTGAACCGTATCAA 57.600 39.130 0.00 0.00 36.99 2.57
8059 8481 5.793967 AGTATTGTTATCTCCCCTCCTTCT 58.206 41.667 0.00 0.00 0.00 2.85
8084 8506 7.599171 TCAATCATGGAATTGACATCATATGC 58.401 34.615 5.87 0.00 39.98 3.14
8227 8655 2.611225 ACTCGATTCTTCATGGCCTC 57.389 50.000 3.32 0.00 0.00 4.70
8444 8872 5.045213 ACAGTTGGATGACCATGTATACCAA 60.045 40.000 0.00 0.00 46.34 3.67
8473 8902 4.561500 TTCGATGTGGGAATTTCTACCA 57.438 40.909 0.00 0.00 0.00 3.25
8496 8925 4.356405 TGAGAAGCTGGAAAGATGTCAA 57.644 40.909 0.00 0.00 0.00 3.18
8497 8926 4.914983 TGAGAAGCTGGAAAGATGTCAAT 58.085 39.130 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 243 8.974060 TCTTGTTAGTGAAACCTAGATTGTTT 57.026 30.769 0.00 0.00 37.80 2.83
240 244 8.974060 TTCTTGTTAGTGAAACCTAGATTGTT 57.026 30.769 0.00 0.00 37.80 2.83
273 277 5.916661 GGATGTGTAGTCATATCCGGTAT 57.083 43.478 0.00 0.00 46.68 2.73
328 332 5.306678 ACCTTTGATTTGCTTGGTTTGGATA 59.693 36.000 0.00 0.00 0.00 2.59
367 371 5.537188 TCGTTGCAATTTTAAGGATTTGCT 58.463 33.333 0.59 0.00 0.00 3.91
376 380 6.583050 CCTCCGTAAATTCGTTGCAATTTTAA 59.417 34.615 0.59 0.00 37.23 1.52
529 534 6.080969 TCTCCAGGAAGTTACTCTCTGTAT 57.919 41.667 11.75 0.00 0.00 2.29
539 544 1.098589 TCCCCCTCTCCAGGAAGTTA 58.901 55.000 0.00 0.00 43.65 2.24
731 736 1.604593 AATGTTGCAGCGCCCTTCT 60.605 52.632 2.29 0.00 0.00 2.85
841 848 7.050377 TGAGAGAAATCACATATTTGACCTCC 58.950 38.462 11.22 6.67 0.00 4.30
842 849 8.394121 GTTGAGAGAAATCACATATTTGACCTC 58.606 37.037 0.00 2.47 0.00 3.85
863 870 1.542492 AATGGGCTTCTGCTGTTGAG 58.458 50.000 0.00 0.00 39.59 3.02
864 871 1.888512 GAAATGGGCTTCTGCTGTTGA 59.111 47.619 0.00 0.00 39.59 3.18
865 872 1.614903 TGAAATGGGCTTCTGCTGTTG 59.385 47.619 0.00 0.00 39.59 3.33
885 892 0.707616 TTTGGGGAATGGGGACGATT 59.292 50.000 0.00 0.00 0.00 3.34
886 893 0.933700 ATTTGGGGAATGGGGACGAT 59.066 50.000 0.00 0.00 0.00 3.73
898 905 1.109323 GGGAGGCGAATGATTTGGGG 61.109 60.000 0.00 0.00 0.00 4.96
934 941 1.068417 GGTGGGGTTTTGCCGTTTC 59.932 57.895 0.00 0.00 38.44 2.78
1146 1156 2.335011 CTGTCGTGCCACGTCTCA 59.665 61.111 17.83 13.38 43.14 3.27
1562 1572 4.438336 CGAGACGACTGGAATAGTAGCAAA 60.438 45.833 0.00 0.00 40.53 3.68
1638 1648 3.317608 GCATTGAGCCATTGACACG 57.682 52.632 0.00 0.00 37.23 4.49
1743 1759 1.556911 ACAACAAACCCCACATTTGCA 59.443 42.857 0.00 0.00 40.10 4.08
1753 1769 6.292649 GCTACAGCAATTAAAACAACAAACCC 60.293 38.462 0.00 0.00 41.59 4.11
1760 1776 6.568869 ACAACAGCTACAGCAATTAAAACAA 58.431 32.000 3.70 0.00 45.16 2.83
1833 1849 4.390264 GGTAGGAGCAAGTCAAGAAAGTT 58.610 43.478 0.00 0.00 0.00 2.66
1835 1851 3.339141 GGGTAGGAGCAAGTCAAGAAAG 58.661 50.000 0.00 0.00 0.00 2.62
1857 1873 3.212685 CGGAGGGAGTACTAGGTAACAG 58.787 54.545 0.00 0.00 41.41 3.16
1891 1911 9.042008 CCATAATACTAGTGTCAAAAACGCTAT 57.958 33.333 5.39 0.00 46.95 2.97
1892 1912 7.493320 CCCATAATACTAGTGTCAAAAACGCTA 59.507 37.037 5.39 0.00 46.85 4.26
1894 1914 6.314400 TCCCATAATACTAGTGTCAAAAACGC 59.686 38.462 5.39 0.00 38.74 4.84
1895 1915 7.463648 CGTCCCATAATACTAGTGTCAAAAACG 60.464 40.741 5.39 3.43 0.00 3.60
1896 1916 7.201582 CCGTCCCATAATACTAGTGTCAAAAAC 60.202 40.741 5.39 0.00 0.00 2.43
1897 1917 6.819649 CCGTCCCATAATACTAGTGTCAAAAA 59.180 38.462 5.39 0.00 0.00 1.94
1898 1918 6.154877 TCCGTCCCATAATACTAGTGTCAAAA 59.845 38.462 5.39 0.00 0.00 2.44
1899 1919 5.657745 TCCGTCCCATAATACTAGTGTCAAA 59.342 40.000 5.39 0.00 0.00 2.69
1900 1920 5.202765 TCCGTCCCATAATACTAGTGTCAA 58.797 41.667 5.39 0.00 0.00 3.18
1901 1921 4.795469 TCCGTCCCATAATACTAGTGTCA 58.205 43.478 5.39 0.00 0.00 3.58
1902 1922 4.217983 CCTCCGTCCCATAATACTAGTGTC 59.782 50.000 5.39 0.00 0.00 3.67
1903 1923 4.150359 CCTCCGTCCCATAATACTAGTGT 58.850 47.826 5.39 0.00 0.00 3.55
1904 1924 3.510360 CCCTCCGTCCCATAATACTAGTG 59.490 52.174 5.39 0.00 0.00 2.74
1906 1926 4.017808 CTCCCTCCGTCCCATAATACTAG 58.982 52.174 0.00 0.00 0.00 2.57
1907 1927 3.400322 ACTCCCTCCGTCCCATAATACTA 59.600 47.826 0.00 0.00 0.00 1.82
1909 1929 2.606378 ACTCCCTCCGTCCCATAATAC 58.394 52.381 0.00 0.00 0.00 1.89
1910 1930 3.501019 GGTACTCCCTCCGTCCCATAATA 60.501 52.174 0.00 0.00 0.00 0.98
1911 1931 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
1912 1932 1.412074 GGTACTCCCTCCGTCCCATAA 60.412 57.143 0.00 0.00 0.00 1.90
1913 1933 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.00 0.00 2.74
1917 1937 1.273759 AAAAGGTACTCCCTCCGTCC 58.726 55.000 0.00 0.00 45.47 4.79
1986 2069 9.906660 CTTATTTGGCACTAACTAACAAATGAA 57.093 29.630 10.24 2.56 40.67 2.57
1987 2070 9.073475 ACTTATTTGGCACTAACTAACAAATGA 57.927 29.630 10.24 2.90 40.67 2.57
2082 2325 1.299541 CAGCTGACGTTCACCAGTTT 58.700 50.000 8.42 0.00 33.19 2.66
2235 2480 5.470845 AGATCGCAAGTTTAGTTGTATGC 57.529 39.130 0.00 0.00 39.48 3.14
2439 2687 7.749126 CCTTCGATTTGACATTTGGTAAGTAAC 59.251 37.037 0.00 0.00 0.00 2.50
2440 2688 7.574217 GCCTTCGATTTGACATTTGGTAAGTAA 60.574 37.037 0.00 0.00 0.00 2.24
2441 2689 6.128117 GCCTTCGATTTGACATTTGGTAAGTA 60.128 38.462 0.00 0.00 0.00 2.24
2453 2701 7.921745 AGTATCTTTACTAGCCTTCGATTTGAC 59.078 37.037 0.00 0.00 36.89 3.18
2480 2728 2.863484 AGGGTGGGGATGCACCAA 60.863 61.111 0.00 0.00 42.99 3.67
2527 2775 3.251487 GGAGTATTCTCTAGTGCGGAGTC 59.749 52.174 0.00 0.00 40.29 3.36
2547 2795 8.707796 AAGAAATATAAGATCGTACAGAGGGA 57.292 34.615 0.00 0.00 0.00 4.20
2551 2799 9.888878 CCGTAAAGAAATATAAGATCGTACAGA 57.111 33.333 0.00 0.00 0.00 3.41
2552 2800 9.888878 TCCGTAAAGAAATATAAGATCGTACAG 57.111 33.333 0.00 0.00 0.00 2.74
2553 2801 9.888878 CTCCGTAAAGAAATATAAGATCGTACA 57.111 33.333 0.00 0.00 0.00 2.90
2554 2802 9.339492 CCTCCGTAAAGAAATATAAGATCGTAC 57.661 37.037 0.00 0.00 0.00 3.67
2555 2803 8.517878 CCCTCCGTAAAGAAATATAAGATCGTA 58.482 37.037 0.00 0.00 0.00 3.43
2556 2804 7.232127 TCCCTCCGTAAAGAAATATAAGATCGT 59.768 37.037 0.00 0.00 0.00 3.73
2557 2805 7.600065 TCCCTCCGTAAAGAAATATAAGATCG 58.400 38.462 0.00 0.00 0.00 3.69
2558 2806 8.586744 ACTCCCTCCGTAAAGAAATATAAGATC 58.413 37.037 0.00 0.00 0.00 2.75
2559 2807 8.493787 ACTCCCTCCGTAAAGAAATATAAGAT 57.506 34.615 0.00 0.00 0.00 2.40
2563 2811 8.716674 ATGTACTCCCTCCGTAAAGAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
2564 2812 7.509659 AGATGTACTCCCTCCGTAAAGAAATAT 59.490 37.037 0.00 0.00 0.00 1.28
2565 2813 6.837568 AGATGTACTCCCTCCGTAAAGAAATA 59.162 38.462 0.00 0.00 0.00 1.40
2566 2814 5.661759 AGATGTACTCCCTCCGTAAAGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
2567 2815 5.021458 AGATGTACTCCCTCCGTAAAGAAA 58.979 41.667 0.00 0.00 0.00 2.52
2568 2816 4.607239 AGATGTACTCCCTCCGTAAAGAA 58.393 43.478 0.00 0.00 0.00 2.52
2569 2817 4.246712 AGATGTACTCCCTCCGTAAAGA 57.753 45.455 0.00 0.00 0.00 2.52
2570 2818 5.109903 CAAAGATGTACTCCCTCCGTAAAG 58.890 45.833 0.00 0.00 0.00 1.85
2571 2819 4.081309 CCAAAGATGTACTCCCTCCGTAAA 60.081 45.833 0.00 0.00 0.00 2.01
2572 2820 3.449737 CCAAAGATGTACTCCCTCCGTAA 59.550 47.826 0.00 0.00 0.00 3.18
2573 2821 3.028850 CCAAAGATGTACTCCCTCCGTA 58.971 50.000 0.00 0.00 0.00 4.02
2574 2822 1.831736 CCAAAGATGTACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
2575 2823 2.101582 CTCCAAAGATGTACTCCCTCCG 59.898 54.545 0.00 0.00 0.00 4.63
2576 2824 2.436173 CCTCCAAAGATGTACTCCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
2625 2922 2.680913 CCTTTGAGCGCCCACTTCG 61.681 63.158 2.29 0.00 0.00 3.79
2805 3103 1.050988 CCCGTCACCAGATCCCTGAT 61.051 60.000 0.00 0.00 43.02 2.90
2870 3168 1.986882 CTTTCCCATCCATAGCCCAC 58.013 55.000 0.00 0.00 0.00 4.61
2945 3243 0.526524 TGAACCGGCGCAACAAAAAG 60.527 50.000 10.83 0.00 0.00 2.27
2957 3255 0.940126 GCACAGCATAGATGAACCGG 59.060 55.000 0.00 0.00 0.00 5.28
2990 3288 5.977725 GCCTAACCAAAGAAAAACTTCAGTC 59.022 40.000 0.00 0.00 37.93 3.51
3037 3336 9.342308 TCCAACATAAGAATATCATCCTTGTTC 57.658 33.333 0.00 0.00 0.00 3.18
3058 3357 7.872113 AATATTCTCATCAGGTTCTTCCAAC 57.128 36.000 0.00 0.00 39.02 3.77
3159 3458 3.612717 ACAGATAGTGTGCACGAGAAGTG 60.613 47.826 13.13 8.29 42.32 3.16
3160 3459 2.558795 ACAGATAGTGTGCACGAGAAGT 59.441 45.455 13.13 0.00 38.28 3.01
3333 3632 5.297776 GCAGCATCTGTGAATAAATACAGGT 59.702 40.000 0.00 0.00 43.40 4.00
3500 3799 7.682593 TTGCATATTTTGTGAAGATAATGCG 57.317 32.000 0.00 0.00 34.42 4.73
3596 3895 7.566760 TTAACTCAGAGCAGAACATTTTTCA 57.433 32.000 0.00 0.00 0.00 2.69
3784 4083 6.429385 GGATATTTTCAGGTAGAGGCAGATTG 59.571 42.308 0.00 0.00 0.00 2.67
3885 4188 7.582719 AGGCCATCACTAGGAAAATAAATACA 58.417 34.615 5.01 0.00 0.00 2.29
3886 4189 7.175119 GGAGGCCATCACTAGGAAAATAAATAC 59.825 40.741 5.01 0.00 0.00 1.89
3887 4190 7.231467 GGAGGCCATCACTAGGAAAATAAATA 58.769 38.462 5.01 0.00 0.00 1.40
3888 4191 6.071320 GGAGGCCATCACTAGGAAAATAAAT 58.929 40.000 5.01 0.00 0.00 1.40
3889 4192 5.445964 GGAGGCCATCACTAGGAAAATAAA 58.554 41.667 5.01 0.00 0.00 1.40
3890 4193 4.141251 GGGAGGCCATCACTAGGAAAATAA 60.141 45.833 5.01 0.00 0.00 1.40
3891 4194 3.394606 GGGAGGCCATCACTAGGAAAATA 59.605 47.826 5.01 0.00 0.00 1.40
3919 4222 2.897969 ACTCCCGAACACAGTAACAGAT 59.102 45.455 0.00 0.00 0.00 2.90
3929 4232 0.889186 ATGTTGCCACTCCCGAACAC 60.889 55.000 0.00 0.00 31.41 3.32
3984 4287 2.884012 CCAATTAGGCAATATGACCGCA 59.116 45.455 0.00 0.00 0.00 5.69
3995 4298 6.899089 TCAGTTTCAGATATCCAATTAGGCA 58.101 36.000 0.00 0.00 37.29 4.75
4232 4535 6.442112 TGATATTGTGAAACGCATTGTTGAA 58.558 32.000 0.00 0.00 40.84 2.69
4276 4579 5.065914 TGAGCTAAGACAAACAGCAGAAAT 58.934 37.500 0.00 0.00 37.78 2.17
4278 4581 4.071961 TGAGCTAAGACAAACAGCAGAA 57.928 40.909 0.00 0.00 37.78 3.02
4320 4623 2.799126 ACAACTGTCCCAGTGTCAAA 57.201 45.000 0.00 0.00 44.62 2.69
4322 4625 2.799126 AAACAACTGTCCCAGTGTCA 57.201 45.000 0.00 0.00 44.62 3.58
4508 4813 6.078202 TCTCTATGAGAAATAGCCAACTCG 57.922 41.667 0.00 0.00 35.59 4.18
4606 4911 6.898041 TGTGCACTTGTGCTACTTTATAAAG 58.102 36.000 23.53 21.21 37.59 1.85
4624 4929 4.430137 ACATCATTCATCTGTTGTGCAC 57.570 40.909 10.75 10.75 30.02 4.57
4625 4930 5.472820 TGTAACATCATTCATCTGTTGTGCA 59.527 36.000 0.00 0.00 35.00 4.57
4626 4931 5.941733 TGTAACATCATTCATCTGTTGTGC 58.058 37.500 0.00 0.00 35.00 4.57
4627 4932 7.861872 TGTTTGTAACATCATTCATCTGTTGTG 59.138 33.333 0.00 0.00 36.25 3.33
4628 4933 7.939782 TGTTTGTAACATCATTCATCTGTTGT 58.060 30.769 0.00 0.00 36.25 3.32
4653 4958 9.838339 CCAAGGATATGTTTTCTTCTACAGTAT 57.162 33.333 0.00 0.00 0.00 2.12
4697 5002 1.142262 GTGTACTGTTGGGAAGGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
4812 5123 4.809691 GCACTTAACCACCCTGTAAAGGAT 60.810 45.833 0.00 0.00 0.00 3.24
4943 5322 1.136828 ACCTTTCCATATAGGCGGCA 58.863 50.000 13.08 0.00 37.29 5.69
5640 6019 1.925255 TGAAGCAATCCTGGATTCCCT 59.075 47.619 18.87 14.58 28.87 4.20
5910 6289 7.492020 TGAACCAAAATCAGTCAAACTCATTTG 59.508 33.333 0.00 0.00 45.67 2.32
5911 6290 7.555087 TGAACCAAAATCAGTCAAACTCATTT 58.445 30.769 0.00 0.00 0.00 2.32
5912 6291 7.111247 TGAACCAAAATCAGTCAAACTCATT 57.889 32.000 0.00 0.00 0.00 2.57
6062 6457 2.217745 TGGTACGTGCACCATCCCA 61.218 57.895 12.15 9.56 43.76 4.37
6263 6658 5.046663 TGGAGTGACATACTGATTGCTACAA 60.047 40.000 0.00 0.00 40.53 2.41
6298 6693 9.679661 TTGAAACTTTAGCATGGACATCTAATA 57.320 29.630 0.00 0.00 0.00 0.98
6326 6721 4.689612 AACCAAACTGAGTCTAGCTTCA 57.310 40.909 0.00 0.00 0.00 3.02
6525 6920 3.004315 CGTAAGTTTGAAATGTGTGGGCT 59.996 43.478 0.00 0.00 0.00 5.19
6602 6997 8.622948 AGTTGCCTTTACCTATCATATTTAGC 57.377 34.615 0.00 0.00 0.00 3.09
6621 7016 9.301153 CATTACTAAAAATGGTCATTAGTTGCC 57.699 33.333 3.10 0.00 39.74 4.52
6667 7062 5.118203 GCTCAGCAAACAATTCAAGAACATC 59.882 40.000 0.00 0.00 0.00 3.06
6747 7142 9.625747 TCAATAATAGGAACAACAATAGATGCA 57.374 29.630 0.00 0.00 0.00 3.96
6879 7274 1.133606 TCCACAGGAAACCCAAACTCC 60.134 52.381 0.00 0.00 0.00 3.85
6969 7364 3.212685 TGATGATGTCACAAACACAGCA 58.787 40.909 0.00 0.00 43.87 4.41
7020 7415 4.593206 CCTAATGGTCCAGGCATAACTCTA 59.407 45.833 0.00 0.00 0.00 2.43
7083 7478 5.598769 ACTATAATGCTGGAAGGTACGAAC 58.401 41.667 0.00 0.00 0.00 3.95
7085 7480 5.009710 CAGACTATAATGCTGGAAGGTACGA 59.990 44.000 0.00 0.00 0.00 3.43
7136 7531 2.754552 TGGAATTAAGTGCAGTGCATCC 59.245 45.455 22.87 21.91 41.91 3.51
7242 7637 7.041508 CCAAATGCAGATATAACTCAACCTCTC 60.042 40.741 0.00 0.00 0.00 3.20
7428 7840 6.119536 TGTTGTCAAGTTGAGAATTACAGGT 58.880 36.000 17.46 0.00 32.15 4.00
7627 8048 6.436847 TGATGGACTAATCCTCAGATCTCATC 59.563 42.308 0.00 0.00 46.43 2.92
7629 8050 5.709594 TGATGGACTAATCCTCAGATCTCA 58.290 41.667 0.00 0.00 46.43 3.27
7702 8123 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
7703 8124 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
7704 8125 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7705 8126 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7706 8127 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7707 8128 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
7708 8129 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
7709 8130 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
7710 8131 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
7711 8132 4.457603 TGTTGGGTCATCTATTTTGGAACG 59.542 41.667 0.00 0.00 0.00 3.95
7712 8133 5.975693 TGTTGGGTCATCTATTTTGGAAC 57.024 39.130 0.00 0.00 0.00 3.62
7713 8134 6.496565 ACAATGTTGGGTCATCTATTTTGGAA 59.503 34.615 0.00 0.00 0.00 3.53
7714 8135 6.015918 ACAATGTTGGGTCATCTATTTTGGA 58.984 36.000 0.00 0.00 0.00 3.53
7715 8136 6.284891 ACAATGTTGGGTCATCTATTTTGG 57.715 37.500 0.00 0.00 0.00 3.28
7716 8137 8.055279 AGTACAATGTTGGGTCATCTATTTTG 57.945 34.615 0.00 0.00 0.00 2.44
7717 8138 9.747898 TTAGTACAATGTTGGGTCATCTATTTT 57.252 29.630 0.00 0.00 0.00 1.82
7718 8139 9.174166 GTTAGTACAATGTTGGGTCATCTATTT 57.826 33.333 0.00 0.00 0.00 1.40
7719 8140 8.548877 AGTTAGTACAATGTTGGGTCATCTATT 58.451 33.333 0.00 0.00 0.00 1.73
7720 8141 8.090788 AGTTAGTACAATGTTGGGTCATCTAT 57.909 34.615 0.00 0.00 0.00 1.98
7721 8142 7.490657 AGTTAGTACAATGTTGGGTCATCTA 57.509 36.000 0.00 0.00 0.00 1.98
7722 8143 6.374417 AGTTAGTACAATGTTGGGTCATCT 57.626 37.500 0.00 0.00 0.00 2.90
7723 8144 7.040686 ACAAAGTTAGTACAATGTTGGGTCATC 60.041 37.037 0.00 0.00 0.00 2.92
7724 8145 6.775629 ACAAAGTTAGTACAATGTTGGGTCAT 59.224 34.615 0.00 0.00 0.00 3.06
7725 8146 6.123651 ACAAAGTTAGTACAATGTTGGGTCA 58.876 36.000 0.00 0.00 0.00 4.02
7726 8147 6.628919 ACAAAGTTAGTACAATGTTGGGTC 57.371 37.500 0.00 0.00 0.00 4.46
7727 8148 7.055378 TGTACAAAGTTAGTACAATGTTGGGT 58.945 34.615 3.90 0.00 46.22 4.51
7728 8149 7.499321 TGTACAAAGTTAGTACAATGTTGGG 57.501 36.000 3.90 0.00 46.22 4.12
7747 8168 8.783093 CCAAAATAGATGACTCAACTTTGTACA 58.217 33.333 0.00 0.00 0.00 2.90
7748 8169 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
7749 8170 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
7750 8171 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
7751 8172 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
7752 8173 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
7753 8174 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
7754 8175 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
7755 8176 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
7756 8177 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
7757 8178 5.046591 ACTCCGTTCCAAAATAGATGACTCA 60.047 40.000 0.00 0.00 0.00 3.41
7758 8179 5.292101 CACTCCGTTCCAAAATAGATGACTC 59.708 44.000 0.00 0.00 0.00 3.36
7759 8180 5.046591 TCACTCCGTTCCAAAATAGATGACT 60.047 40.000 0.00 0.00 0.00 3.41
7760 8181 5.175859 TCACTCCGTTCCAAAATAGATGAC 58.824 41.667 0.00 0.00 0.00 3.06
7761 8182 5.414789 TCACTCCGTTCCAAAATAGATGA 57.585 39.130 0.00 0.00 0.00 2.92
7762 8183 7.210174 TCTATCACTCCGTTCCAAAATAGATG 58.790 38.462 0.00 0.00 0.00 2.90
7763 8184 7.361457 TCTATCACTCCGTTCCAAAATAGAT 57.639 36.000 0.00 0.00 0.00 1.98
7764 8185 6.785337 TCTATCACTCCGTTCCAAAATAGA 57.215 37.500 0.00 0.00 0.00 1.98
7765 8186 7.843490 TTTCTATCACTCCGTTCCAAAATAG 57.157 36.000 0.00 0.00 0.00 1.73
7766 8187 9.893634 TTATTTCTATCACTCCGTTCCAAAATA 57.106 29.630 0.00 0.00 0.00 1.40
7767 8188 8.674607 GTTATTTCTATCACTCCGTTCCAAAAT 58.325 33.333 0.00 0.00 0.00 1.82
7768 8189 7.881232 AGTTATTTCTATCACTCCGTTCCAAAA 59.119 33.333 0.00 0.00 0.00 2.44
7769 8190 7.391620 AGTTATTTCTATCACTCCGTTCCAAA 58.608 34.615 0.00 0.00 0.00 3.28
7770 8191 6.942976 AGTTATTTCTATCACTCCGTTCCAA 58.057 36.000 0.00 0.00 0.00 3.53
7771 8192 6.540438 AGTTATTTCTATCACTCCGTTCCA 57.460 37.500 0.00 0.00 0.00 3.53
7772 8193 7.266400 AGAAGTTATTTCTATCACTCCGTTCC 58.734 38.462 0.00 0.00 44.32 3.62
7773 8194 8.192110 AGAGAAGTTATTTCTATCACTCCGTTC 58.808 37.037 0.00 0.00 46.12 3.95
7774 8195 8.068892 AGAGAAGTTATTTCTATCACTCCGTT 57.931 34.615 0.00 0.00 46.12 4.44
7775 8196 7.648039 AGAGAAGTTATTTCTATCACTCCGT 57.352 36.000 0.00 0.00 46.12 4.69
7776 8197 7.043059 GCAAGAGAAGTTATTTCTATCACTCCG 60.043 40.741 0.00 0.00 46.12 4.63
7777 8198 7.766278 TGCAAGAGAAGTTATTTCTATCACTCC 59.234 37.037 0.00 0.00 46.12 3.85
7778 8199 8.709386 TGCAAGAGAAGTTATTTCTATCACTC 57.291 34.615 0.00 0.00 46.12 3.51
7779 8200 8.535335 TCTGCAAGAGAAGTTATTTCTATCACT 58.465 33.333 0.00 0.00 46.12 3.41
7780 8201 8.709386 TCTGCAAGAGAAGTTATTTCTATCAC 57.291 34.615 0.00 0.00 46.12 3.06
7855 8276 3.295093 TCCAAGGACATCTGCAACAAAA 58.705 40.909 0.00 0.00 0.00 2.44
7858 8279 2.655090 TTCCAAGGACATCTGCAACA 57.345 45.000 0.00 0.00 0.00 3.33
7859 8280 3.507233 TGATTTCCAAGGACATCTGCAAC 59.493 43.478 14.44 0.00 33.75 4.17
7873 8294 8.162746 TGTAGGAATATGTGCATATGATTTCCA 58.837 33.333 23.71 14.02 33.94 3.53
7992 8414 8.514594 TCAACTGAGATGATCCAATTTTAACAC 58.485 33.333 0.00 0.00 0.00 3.32
7998 8420 5.124457 CGGTTCAACTGAGATGATCCAATTT 59.876 40.000 16.75 0.00 36.76 1.82
8059 8481 7.309560 GGCATATGATGTCAATTCCATGATTGA 60.310 37.037 6.97 5.87 42.18 2.57
8084 8506 3.623060 CGTGTTCCACCTCTAATTCATGG 59.377 47.826 0.00 0.00 0.00 3.66
8108 8530 5.988287 TGATGTGCCAATTAGTAGATGACA 58.012 37.500 0.00 0.00 0.00 3.58
8227 8655 0.174389 ACAGCAGCAGTACATCTCCG 59.826 55.000 0.00 0.00 0.00 4.63
8465 8894 4.908601 TCCAGCTTCTCATTGGTAGAAA 57.091 40.909 0.00 0.00 32.77 2.52
8473 8902 4.914983 TGACATCTTTCCAGCTTCTCATT 58.085 39.130 0.00 0.00 0.00 2.57
8496 8925 3.851458 TGATCAGTGCTTCATGCCTAT 57.149 42.857 0.00 0.00 42.00 2.57
8497 8926 3.473625 CATGATCAGTGCTTCATGCCTA 58.526 45.455 17.52 0.00 41.82 3.93
8514 8943 2.912295 TCTCCAACTGAATCCACCATGA 59.088 45.455 0.00 0.00 0.00 3.07
8518 8947 2.834549 TCTCTCTCCAACTGAATCCACC 59.165 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.