Multiple sequence alignment - TraesCS5D01G242500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G242500 chr5D 100.000 4745 0 0 1 4745 350996915 350992171 0.000000e+00 8763.0
1 TraesCS5D01G242500 chr5B 90.250 2082 93 53 363 2383 411811660 411809628 0.000000e+00 2619.0
2 TraesCS5D01G242500 chr5B 93.074 693 32 8 3418 4102 411808482 411807798 0.000000e+00 1000.0
3 TraesCS5D01G242500 chr5B 89.643 589 38 6 2347 2935 411809627 411809062 0.000000e+00 728.0
4 TraesCS5D01G242500 chr5B 88.441 571 17 8 2808 3346 411809066 411808513 1.110000e-180 643.0
5 TraesCS5D01G242500 chr5B 88.539 349 14 13 4409 4745 411807646 411807312 2.660000e-107 399.0
6 TraesCS5D01G242500 chr5B 96.552 58 2 0 4109 4166 411807742 411807685 3.910000e-16 97.1
7 TraesCS5D01G242500 chr5B 100.000 29 0 0 3395 3423 411808518 411808490 2.000000e-03 54.7
8 TraesCS5D01G242500 chr5A 91.735 859 37 15 1 833 451466372 451465522 0.000000e+00 1162.0
9 TraesCS5D01G242500 chr5A 91.189 715 31 12 832 1541 451465493 451464806 0.000000e+00 942.0
10 TraesCS5D01G242500 chr5A 82.541 1031 82 44 2797 3753 451462801 451461795 0.000000e+00 817.0
11 TraesCS5D01G242500 chr5A 86.174 622 61 12 1555 2165 451464387 451463780 0.000000e+00 649.0
12 TraesCS5D01G242500 chr5A 88.578 464 31 13 2378 2831 451463370 451462919 1.160000e-150 544.0
13 TraesCS5D01G242500 chr5A 93.991 233 11 2 1540 1772 451464611 451464382 2.720000e-92 350.0
14 TraesCS5D01G242500 chr5A 85.556 360 15 12 3829 4166 451461664 451461320 4.550000e-90 342.0
15 TraesCS5D01G242500 chr5A 91.083 157 11 3 2163 2318 451463524 451463370 4.810000e-50 209.0
16 TraesCS5D01G242500 chr5A 86.275 102 9 2 4416 4512 451461267 451461166 6.490000e-19 106.0
17 TraesCS5D01G242500 chr3B 87.671 146 12 4 3231 3370 5095155 5095010 1.060000e-36 165.0
18 TraesCS5D01G242500 chrUn 83.511 188 16 5 3198 3370 45127677 45127864 1.370000e-35 161.0
19 TraesCS5D01G242500 chrUn 83.422 187 16 5 3199 3370 171027821 171027635 4.910000e-35 159.0
20 TraesCS5D01G242500 chrUn 83.422 187 16 5 3199 3370 247551158 247550972 4.910000e-35 159.0
21 TraesCS5D01G242500 chrUn 86.986 146 13 3 3231 3370 345599616 345599471 4.910000e-35 159.0
22 TraesCS5D01G242500 chrUn 83.422 187 16 5 3199 3370 355124953 355125139 4.910000e-35 159.0
23 TraesCS5D01G242500 chr4D 86.986 146 13 3 3231 3370 135057321 135057176 4.910000e-35 159.0
24 TraesCS5D01G242500 chr1D 83.422 187 16 5 3199 3370 493804636 493804450 4.910000e-35 159.0
25 TraesCS5D01G242500 chr1D 94.444 90 5 0 4284 4373 473527642 473527553 6.400000e-29 139.0
26 TraesCS5D01G242500 chr2D 94.444 90 5 0 4284 4373 261819099 261819188 6.400000e-29 139.0
27 TraesCS5D01G242500 chr2D 94.444 90 5 0 4284 4373 261822249 261822338 6.400000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G242500 chr5D 350992171 350996915 4744 True 8763.000000 8763 100.000000 1 4745 1 chr5D.!!$R1 4744
1 TraesCS5D01G242500 chr5B 411807312 411811660 4348 True 791.542857 2619 92.357000 363 4745 7 chr5B.!!$R1 4382
2 TraesCS5D01G242500 chr5A 451461166 451466372 5206 True 569.000000 1162 88.569111 1 4512 9 chr5A.!!$R1 4511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 731 0.250467 TTGTCACCTCTTCCTGCTGC 60.250 55.0 0.0 0.0 0.00 5.25 F
1360 1420 0.739462 TACTGCTCGATTTGGCACCG 60.739 55.0 0.0 0.0 34.57 4.94 F
2199 2940 0.029300 TGTTCAACTTTCTGCTGCGC 59.971 50.0 0.0 0.0 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2919 1.599071 CGCAGCAGAAAGTTGAACAGA 59.401 47.619 0.00 0.00 0.0 3.41 R
2890 3840 0.687920 GGCCTAGGATCCCACTTAGC 59.312 60.000 14.75 3.17 0.0 3.09 R
4152 5397 0.036306 ACCCCAATCGACTGACCAAC 59.964 55.000 0.00 0.00 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.424895 AGCCCCAGATCAATGTAGAGATATC 59.575 44.000 0.00 0.00 0.00 1.63
66 67 9.160496 GTAGAGATATCCCAATGAATCAATGAC 57.840 37.037 0.00 0.00 0.00 3.06
69 70 9.075678 GAGATATCCCAATGAATCAATGACTTT 57.924 33.333 0.00 0.00 0.00 2.66
71 72 5.920193 TCCCAATGAATCAATGACTTTCC 57.080 39.130 0.00 0.00 0.00 3.13
74 75 6.441284 TCCCAATGAATCAATGACTTTCCAAT 59.559 34.615 0.00 0.00 0.00 3.16
77 78 7.065324 CCAATGAATCAATGACTTTCCAATTGG 59.935 37.037 19.08 19.08 31.86 3.16
89 90 4.323569 TTCCAATTGGTAATAGCCACCA 57.676 40.909 23.76 0.00 44.35 4.17
100 101 4.481368 AATAGCCACCAATGACTCGTTA 57.519 40.909 0.00 0.00 0.00 3.18
107 108 5.390613 CCACCAATGACTCGTTACAATTTC 58.609 41.667 0.00 0.00 0.00 2.17
115 116 4.817517 ACTCGTTACAATTTCCTGACGAT 58.182 39.130 0.00 0.00 38.60 3.73
158 159 3.797256 CCGGTGACTCGTTCAATATTCTC 59.203 47.826 0.00 0.00 35.39 2.87
159 160 3.797256 CGGTGACTCGTTCAATATTCTCC 59.203 47.826 0.00 0.00 35.39 3.71
160 161 4.676986 CGGTGACTCGTTCAATATTCTCCA 60.677 45.833 0.00 0.00 35.39 3.86
161 162 5.360591 GGTGACTCGTTCAATATTCTCCAT 58.639 41.667 0.00 0.00 35.39 3.41
162 163 5.235186 GGTGACTCGTTCAATATTCTCCATG 59.765 44.000 0.00 0.00 35.39 3.66
163 164 6.042777 GTGACTCGTTCAATATTCTCCATGA 58.957 40.000 0.00 0.00 35.39 3.07
172 173 5.761726 TCAATATTCTCCATGACATCTGCAC 59.238 40.000 0.00 0.00 0.00 4.57
220 221 4.289672 ACCATTAACAGATCAACCCAGTCT 59.710 41.667 0.00 0.00 0.00 3.24
236 237 4.096984 CCCAGTCTCTGTAAATTCATTGCC 59.903 45.833 0.00 0.00 0.00 4.52
244 245 4.023291 TGTAAATTCATTGCCTTCTCCCC 58.977 43.478 0.00 0.00 0.00 4.81
269 277 7.221067 CCTTTCCGATCGAATATACTAGAATGC 59.779 40.741 18.66 0.00 0.00 3.56
296 304 4.709397 CCCAATCCAGCCACTGTAAATTTA 59.291 41.667 0.00 0.00 0.00 1.40
341 349 3.454082 AGTCCTGCCATGTTTTTCCAAAA 59.546 39.130 0.00 0.00 0.00 2.44
698 717 2.741985 CACCTCGCGCCATTGTCA 60.742 61.111 0.00 0.00 0.00 3.58
712 731 0.250467 TTGTCACCTCTTCCTGCTGC 60.250 55.000 0.00 0.00 0.00 5.25
721 740 1.970640 TCTTCCTGCTGCTCACACTTA 59.029 47.619 0.00 0.00 0.00 2.24
766 796 3.512219 TTTTAGGGAACACCACCGATT 57.488 42.857 0.00 0.00 43.89 3.34
871 931 1.618616 CCAACAACCTATCCAACCCCC 60.619 57.143 0.00 0.00 0.00 5.40
888 948 1.234615 CCCTCTCGGCGCAAAAAGAA 61.235 55.000 10.83 0.00 0.00 2.52
905 965 5.913946 AAAGAAAAGAGAAGGGAAGAGGA 57.086 39.130 0.00 0.00 0.00 3.71
906 966 5.497464 AAGAAAAGAGAAGGGAAGAGGAG 57.503 43.478 0.00 0.00 0.00 3.69
907 967 4.757692 AGAAAAGAGAAGGGAAGAGGAGA 58.242 43.478 0.00 0.00 0.00 3.71
908 968 4.777366 AGAAAAGAGAAGGGAAGAGGAGAG 59.223 45.833 0.00 0.00 0.00 3.20
909 969 2.846665 AGAGAAGGGAAGAGGAGAGG 57.153 55.000 0.00 0.00 0.00 3.69
1173 1233 2.283173 CCGCTTCCCCAGGCTTTT 60.283 61.111 0.00 0.00 0.00 2.27
1175 1235 2.639327 CGCTTCCCCAGGCTTTTGG 61.639 63.158 0.00 0.00 38.00 3.28
1176 1236 2.947532 GCTTCCCCAGGCTTTTGGC 61.948 63.158 0.00 0.00 46.43 4.52
1229 1289 1.915983 GGGTCTCTGTGGGGGATTC 59.084 63.158 0.00 0.00 0.00 2.52
1360 1420 0.739462 TACTGCTCGATTTGGCACCG 60.739 55.000 0.00 0.00 34.57 4.94
1377 1437 3.311322 GCACCGGTTTATCGAATTGATCA 59.689 43.478 2.97 0.00 38.57 2.92
1378 1438 4.552767 GCACCGGTTTATCGAATTGATCAG 60.553 45.833 2.97 0.00 38.57 2.90
1386 1446 8.616076 GGTTTATCGAATTGATCAGTGAATTCT 58.384 33.333 13.38 2.24 36.27 2.40
1399 1459 9.703892 GATCAGTGAATTCTAGTTACTGCATAT 57.296 33.333 14.84 6.62 38.81 1.78
1425 1485 5.948842 ACCAACCAAAGAATAGGTTACTGT 58.051 37.500 0.00 0.00 45.93 3.55
1429 1489 8.674607 CCAACCAAAGAATAGGTTACTGTAATC 58.325 37.037 3.23 2.88 45.93 1.75
1430 1490 9.449719 CAACCAAAGAATAGGTTACTGTAATCT 57.550 33.333 16.82 16.82 45.93 2.40
1455 1520 7.108841 AGATGATTGAATTGAACCCTGAATG 57.891 36.000 0.00 0.00 0.00 2.67
1456 1521 6.666546 AGATGATTGAATTGAACCCTGAATGT 59.333 34.615 0.00 0.00 0.00 2.71
1457 1522 7.835682 AGATGATTGAATTGAACCCTGAATGTA 59.164 33.333 0.00 0.00 0.00 2.29
1458 1523 7.959658 TGATTGAATTGAACCCTGAATGTAT 57.040 32.000 0.00 0.00 0.00 2.29
1459 1524 9.645128 ATGATTGAATTGAACCCTGAATGTATA 57.355 29.630 0.00 0.00 0.00 1.47
1460 1525 9.645128 TGATTGAATTGAACCCTGAATGTATAT 57.355 29.630 0.00 0.00 0.00 0.86
1499 1565 7.149973 ACTGCACGACTGAAAAGTTAGTTATA 58.850 34.615 0.00 0.00 0.00 0.98
1503 1569 9.821662 GCACGACTGAAAAGTTAGTTATATTTT 57.178 29.630 0.00 0.00 0.00 1.82
1537 1603 3.205338 TCACACACTGAACTTGTGATGG 58.795 45.455 9.38 0.00 46.18 3.51
1542 1608 4.761739 CACACTGAACTTGTGATGGGTTAT 59.238 41.667 0.00 0.00 46.18 1.89
1545 1611 6.323739 ACACTGAACTTGTGATGGGTTATTTT 59.676 34.615 0.00 0.00 38.65 1.82
1546 1612 7.504238 ACACTGAACTTGTGATGGGTTATTTTA 59.496 33.333 0.00 0.00 38.65 1.52
1549 1615 8.472007 TGAACTTGTGATGGGTTATTTTAGTT 57.528 30.769 0.00 0.00 0.00 2.24
1550 1616 9.575868 TGAACTTGTGATGGGTTATTTTAGTTA 57.424 29.630 0.00 0.00 0.00 2.24
1576 1835 5.822132 ACCCATTGATTTTGGATGAAACA 57.178 34.783 0.00 0.00 36.26 2.83
1770 2244 2.557924 GTCATGGATGTGCTTGGACAAA 59.442 45.455 0.00 0.00 0.00 2.83
1792 2266 8.504005 ACAAATAAGTATGTAAGTCAACAGTGC 58.496 33.333 0.00 0.00 31.70 4.40
1807 2281 2.158957 ACAGTGCGACCTCTCTTTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
1809 2283 3.070018 AGTGCGACCTCTCTTTTTGATG 58.930 45.455 0.00 0.00 0.00 3.07
1821 2295 3.569701 TCTTTTTGATGGTTCTGACAGCC 59.430 43.478 0.00 0.00 0.00 4.85
1832 2306 4.261197 GGTTCTGACAGCCAAAACAGTTAG 60.261 45.833 0.00 0.00 0.00 2.34
1907 2381 1.000283 CCCTATTAGCACTGCTCCTCG 60.000 57.143 6.86 0.00 40.44 4.63
1918 2392 1.865970 CTGCTCCTCGATCTTCATTGC 59.134 52.381 0.00 0.00 0.00 3.56
1975 2449 8.755696 TCCTTGACATTTAATTTAACATGTGC 57.244 30.769 0.00 10.62 29.81 4.57
1997 2471 7.248437 GTGCCAAACACCTACTACATATTTTC 58.752 38.462 0.00 0.00 44.02 2.29
2048 2524 5.186996 TCAAGACAAGCTTTTTCCATGAC 57.813 39.130 0.00 0.00 33.60 3.06
2050 2526 5.126869 TCAAGACAAGCTTTTTCCATGACAA 59.873 36.000 0.00 0.00 33.60 3.18
2059 2535 4.804868 TTTTCCATGACAATCCATGTGG 57.195 40.909 0.00 0.00 44.12 4.17
2199 2940 0.029300 TGTTCAACTTTCTGCTGCGC 59.971 50.000 0.00 0.00 0.00 6.09
2204 2945 1.160329 AACTTTCTGCTGCGCGACTT 61.160 50.000 12.10 0.00 0.00 3.01
2322 3064 4.896482 AGGACTTCAAGTGTCTACTTCACT 59.104 41.667 0.00 0.00 45.12 3.41
2330 3072 3.067833 GTGTCTACTTCACTCTTTGGCC 58.932 50.000 0.00 0.00 33.59 5.36
2341 3083 4.222145 TCACTCTTTGGCCGTTCTATAGTT 59.778 41.667 0.00 0.00 0.00 2.24
2352 3131 4.985409 CCGTTCTATAGTTCTGCCAGATTC 59.015 45.833 0.00 0.00 0.00 2.52
2373 3152 4.136796 TCGGCTTATTAAATCTGCATGCT 58.863 39.130 20.33 0.00 0.00 3.79
2576 3355 8.671028 GTTATTTTTATGGCTCTAGGTTTTCGA 58.329 33.333 0.00 0.00 0.00 3.71
2577 3356 7.881775 ATTTTTATGGCTCTAGGTTTTCGAT 57.118 32.000 0.00 0.00 0.00 3.59
2578 3357 8.974060 ATTTTTATGGCTCTAGGTTTTCGATA 57.026 30.769 0.00 0.00 0.00 2.92
2579 3358 8.974060 TTTTTATGGCTCTAGGTTTTCGATAT 57.026 30.769 0.00 0.00 0.00 1.63
2580 3359 7.962964 TTTATGGCTCTAGGTTTTCGATATG 57.037 36.000 0.00 0.00 0.00 1.78
2581 3360 5.552870 ATGGCTCTAGGTTTTCGATATGT 57.447 39.130 0.00 0.00 0.00 2.29
2582 3361 5.353394 TGGCTCTAGGTTTTCGATATGTT 57.647 39.130 0.00 0.00 0.00 2.71
2583 3362 6.474140 TGGCTCTAGGTTTTCGATATGTTA 57.526 37.500 0.00 0.00 0.00 2.41
2584 3363 6.880484 TGGCTCTAGGTTTTCGATATGTTAA 58.120 36.000 0.00 0.00 0.00 2.01
2643 3431 9.325198 GGAGACAAAGGAATGTGTTTAATTTTT 57.675 29.630 0.00 0.00 32.57 1.94
2756 3544 4.992951 AGAAATTTGAAAGAAGCCACATGC 59.007 37.500 0.00 0.00 41.71 4.06
2787 3575 9.139734 TGTAAGAAGAAAAACAGTAGGAGAGTA 57.860 33.333 0.00 0.00 0.00 2.59
2790 3578 8.423906 AGAAGAAAAACAGTAGGAGAGTATGA 57.576 34.615 0.00 0.00 0.00 2.15
2844 3794 1.628846 GTTGAGCCCCTAGAGGAACAA 59.371 52.381 0.00 0.00 38.24 2.83
2847 3797 0.621082 AGCCCCTAGAGGAACAAAGC 59.379 55.000 0.00 0.00 38.24 3.51
2850 3800 2.716217 CCCCTAGAGGAACAAAGCAAG 58.284 52.381 0.00 0.00 38.24 4.01
2891 3841 8.556194 TGTCAACATAAGTGGAAATATAATCGC 58.444 33.333 0.00 0.00 26.96 4.58
3006 4062 6.801862 CCGGAATGTTGAAGATTTACTTGTTC 59.198 38.462 0.00 0.00 39.13 3.18
3152 4238 2.094099 TGTGATTGCATCGTCACATTCG 59.906 45.455 19.86 0.00 46.97 3.34
3221 4312 1.235724 GACCACTTCCTTTTCCACCG 58.764 55.000 0.00 0.00 0.00 4.94
3312 4417 2.158842 ACTGATGATGAAGGCCTGTAGC 60.159 50.000 5.69 0.98 42.60 3.58
3316 4422 2.666596 GATGAAGGCCTGTAGCGGGG 62.667 65.000 5.69 0.00 45.17 5.73
3345 4452 1.203758 GGGTTGGTAAAGCGAAATGGG 59.796 52.381 0.00 0.00 34.50 4.00
3346 4453 1.890489 GGTTGGTAAAGCGAAATGGGT 59.110 47.619 0.00 0.00 0.00 4.51
3353 4460 4.114997 GCGAAATGGGTGCCACCG 62.115 66.667 7.99 0.00 39.83 4.94
3355 4462 2.961768 GAAATGGGTGCCACCGTG 59.038 61.111 7.99 0.00 39.83 4.94
3356 4463 1.901464 GAAATGGGTGCCACCGTGT 60.901 57.895 7.99 0.00 39.83 4.49
3366 4473 1.374947 CCACCGTGTCCCATTGAGT 59.625 57.895 0.00 0.00 0.00 3.41
3367 4474 0.955428 CCACCGTGTCCCATTGAGTG 60.955 60.000 0.00 0.00 0.00 3.51
3368 4475 1.302511 ACCGTGTCCCATTGAGTGC 60.303 57.895 0.00 0.00 0.00 4.40
3381 4488 1.078848 GAGTGCTGCTGGGTACAGG 60.079 63.158 0.00 0.00 45.04 4.00
3383 4490 1.127567 AGTGCTGCTGGGTACAGGAA 61.128 55.000 0.00 0.00 44.83 3.36
3387 4494 1.474077 GCTGCTGGGTACAGGAATTTG 59.526 52.381 0.00 0.00 44.83 2.32
3392 4499 3.622455 GCTGGGTACAGGAATTTGCTAGT 60.622 47.826 0.00 0.00 45.04 2.57
3497 4622 0.030504 TTGTCGCCTACGTCGTTTCA 59.969 50.000 1.78 0.00 41.18 2.69
3509 4634 1.798813 GTCGTTTCATTCGTCTGCCTT 59.201 47.619 0.00 0.00 0.00 4.35
3512 4637 0.516877 TTTCATTCGTCTGCCTTGCG 59.483 50.000 0.00 0.00 0.00 4.85
3646 4771 3.579709 TGCTTCATCAACTTCGTCTCTC 58.420 45.455 0.00 0.00 0.00 3.20
3647 4772 2.596419 GCTTCATCAACTTCGTCTCTCG 59.404 50.000 0.00 0.00 41.41 4.04
3664 4789 1.065928 CGCTCGCTCCCTAATTCGT 59.934 57.895 0.00 0.00 0.00 3.85
3753 4882 3.265995 ACACCGAGGATTAAGGGTCAAAT 59.734 43.478 0.00 0.00 0.00 2.32
3757 4886 5.368523 ACCGAGGATTAAGGGTCAAATATCA 59.631 40.000 0.00 0.00 0.00 2.15
3758 4887 6.126594 ACCGAGGATTAAGGGTCAAATATCAA 60.127 38.462 0.00 0.00 0.00 2.57
3759 4888 6.770785 CCGAGGATTAAGGGTCAAATATCAAA 59.229 38.462 0.00 0.00 0.00 2.69
3760 4889 7.448469 CCGAGGATTAAGGGTCAAATATCAAAT 59.552 37.037 0.00 0.00 0.00 2.32
3761 4890 8.507249 CGAGGATTAAGGGTCAAATATCAAATC 58.493 37.037 0.00 0.00 0.00 2.17
3774 4930 2.060326 TCAAATCTCGCGAAGACGTT 57.940 45.000 11.33 5.54 41.98 3.99
3803 4960 1.743391 CCGTGTGTGGTCCTGTGTA 59.257 57.895 0.00 0.00 0.00 2.90
3951 5140 0.760189 ATTGTGGTGCTTGGTGGCTT 60.760 50.000 0.00 0.00 0.00 4.35
4021 5210 7.546667 GTCGTTATTACTGTCAAACCTCCATAA 59.453 37.037 0.00 0.00 0.00 1.90
4152 5397 2.873133 TTTGGTGCCCGTAAACAAAG 57.127 45.000 0.00 0.00 0.00 2.77
4155 5400 1.405821 TGGTGCCCGTAAACAAAGTTG 59.594 47.619 0.00 0.00 0.00 3.16
4166 5411 5.277154 CGTAAACAAAGTTGGTCAGTCGATT 60.277 40.000 0.00 0.00 0.00 3.34
4167 5412 4.552166 AACAAAGTTGGTCAGTCGATTG 57.448 40.909 0.68 0.68 0.00 2.67
4168 5413 2.878406 ACAAAGTTGGTCAGTCGATTGG 59.122 45.455 8.17 0.00 0.00 3.16
4169 5414 2.185004 AAGTTGGTCAGTCGATTGGG 57.815 50.000 8.17 0.00 0.00 4.12
4170 5415 0.324943 AGTTGGTCAGTCGATTGGGG 59.675 55.000 8.17 0.00 0.00 4.96
4171 5416 0.036306 GTTGGTCAGTCGATTGGGGT 59.964 55.000 8.17 0.00 0.00 4.95
4172 5417 0.036164 TTGGTCAGTCGATTGGGGTG 59.964 55.000 8.17 0.00 0.00 4.61
4173 5418 0.834261 TGGTCAGTCGATTGGGGTGA 60.834 55.000 8.17 0.00 0.00 4.02
4174 5419 0.108138 GGTCAGTCGATTGGGGTGAG 60.108 60.000 8.17 0.00 0.00 3.51
4175 5420 0.895530 GTCAGTCGATTGGGGTGAGA 59.104 55.000 8.17 0.00 0.00 3.27
4176 5421 1.134965 GTCAGTCGATTGGGGTGAGAG 60.135 57.143 8.17 0.00 0.00 3.20
4177 5422 0.460987 CAGTCGATTGGGGTGAGAGC 60.461 60.000 0.00 0.00 0.00 4.09
4178 5423 0.904865 AGTCGATTGGGGTGAGAGCA 60.905 55.000 0.00 0.00 0.00 4.26
4179 5424 0.179000 GTCGATTGGGGTGAGAGCAT 59.821 55.000 0.00 0.00 0.00 3.79
4180 5425 0.465705 TCGATTGGGGTGAGAGCATC 59.534 55.000 0.00 0.00 0.00 3.91
4181 5426 0.178767 CGATTGGGGTGAGAGCATCA 59.821 55.000 0.00 0.00 37.82 3.07
4182 5427 1.809271 CGATTGGGGTGAGAGCATCAG 60.809 57.143 0.00 0.00 39.07 2.90
4183 5428 1.211457 GATTGGGGTGAGAGCATCAGT 59.789 52.381 0.00 0.00 39.07 3.41
4184 5429 1.951209 TTGGGGTGAGAGCATCAGTA 58.049 50.000 0.00 0.00 39.07 2.74
4185 5430 1.951209 TGGGGTGAGAGCATCAGTAA 58.049 50.000 0.00 0.00 39.07 2.24
4186 5431 2.481441 TGGGGTGAGAGCATCAGTAAT 58.519 47.619 0.00 0.00 39.07 1.89
4187 5432 3.653164 TGGGGTGAGAGCATCAGTAATA 58.347 45.455 0.00 0.00 39.07 0.98
4188 5433 4.234550 TGGGGTGAGAGCATCAGTAATAT 58.765 43.478 0.00 0.00 39.07 1.28
4189 5434 4.660303 TGGGGTGAGAGCATCAGTAATATT 59.340 41.667 0.00 0.00 39.07 1.28
4190 5435 5.221722 TGGGGTGAGAGCATCAGTAATATTC 60.222 44.000 0.00 0.00 39.07 1.75
4191 5436 5.012561 GGGGTGAGAGCATCAGTAATATTCT 59.987 44.000 0.00 0.00 39.07 2.40
4192 5437 6.465035 GGGGTGAGAGCATCAGTAATATTCTT 60.465 42.308 0.00 0.00 39.07 2.52
4193 5438 6.995091 GGGTGAGAGCATCAGTAATATTCTTT 59.005 38.462 0.00 0.00 39.07 2.52
4194 5439 7.172361 GGGTGAGAGCATCAGTAATATTCTTTC 59.828 40.741 0.00 0.00 39.07 2.62
4195 5440 7.172361 GGTGAGAGCATCAGTAATATTCTTTCC 59.828 40.741 0.00 0.00 39.07 3.13
4196 5441 7.712639 GTGAGAGCATCAGTAATATTCTTTCCA 59.287 37.037 0.00 0.00 39.07 3.53
4197 5442 8.435187 TGAGAGCATCAGTAATATTCTTTCCAT 58.565 33.333 0.00 0.00 37.82 3.41
4198 5443 8.845413 AGAGCATCAGTAATATTCTTTCCATC 57.155 34.615 0.00 0.00 37.82 3.51
4199 5444 7.601886 AGAGCATCAGTAATATTCTTTCCATCG 59.398 37.037 0.00 0.00 37.82 3.84
4200 5445 6.652481 AGCATCAGTAATATTCTTTCCATCGG 59.348 38.462 0.00 0.00 0.00 4.18
4201 5446 6.621596 GCATCAGTAATATTCTTTCCATCGGC 60.622 42.308 0.00 0.00 0.00 5.54
4202 5447 6.174720 TCAGTAATATTCTTTCCATCGGCT 57.825 37.500 0.00 0.00 0.00 5.52
4203 5448 6.591935 TCAGTAATATTCTTTCCATCGGCTT 58.408 36.000 0.00 0.00 0.00 4.35
4204 5449 6.706270 TCAGTAATATTCTTTCCATCGGCTTC 59.294 38.462 0.00 0.00 0.00 3.86
4205 5450 6.708054 CAGTAATATTCTTTCCATCGGCTTCT 59.292 38.462 0.00 0.00 0.00 2.85
4206 5451 7.227512 CAGTAATATTCTTTCCATCGGCTTCTT 59.772 37.037 0.00 0.00 0.00 2.52
4207 5452 6.382869 AATATTCTTTCCATCGGCTTCTTG 57.617 37.500 0.00 0.00 0.00 3.02
4208 5453 2.113860 TCTTTCCATCGGCTTCTTGG 57.886 50.000 0.00 0.00 0.00 3.61
4209 5454 1.098050 CTTTCCATCGGCTTCTTGGG 58.902 55.000 0.00 0.00 0.00 4.12
4210 5455 0.965363 TTTCCATCGGCTTCTTGGGC 60.965 55.000 0.00 0.00 0.00 5.36
4211 5456 1.852157 TTCCATCGGCTTCTTGGGCT 61.852 55.000 0.00 0.00 0.00 5.19
4212 5457 1.821332 CCATCGGCTTCTTGGGCTC 60.821 63.158 0.00 0.00 0.00 4.70
4213 5458 1.222936 CATCGGCTTCTTGGGCTCT 59.777 57.895 0.00 0.00 0.00 4.09
4214 5459 0.813210 CATCGGCTTCTTGGGCTCTC 60.813 60.000 0.00 0.00 0.00 3.20
4215 5460 2.303549 ATCGGCTTCTTGGGCTCTCG 62.304 60.000 0.00 0.00 0.00 4.04
4216 5461 2.665603 GGCTTCTTGGGCTCTCGT 59.334 61.111 0.00 0.00 0.00 4.18
4217 5462 1.743252 GGCTTCTTGGGCTCTCGTG 60.743 63.158 0.00 0.00 0.00 4.35
4218 5463 2.394563 GCTTCTTGGGCTCTCGTGC 61.395 63.158 0.00 0.00 0.00 5.34
4219 5464 1.004560 CTTCTTGGGCTCTCGTGCA 60.005 57.895 0.00 0.00 34.04 4.57
4220 5465 1.004560 TTCTTGGGCTCTCGTGCAG 60.005 57.895 0.00 0.00 34.04 4.41
4221 5466 1.471829 TTCTTGGGCTCTCGTGCAGA 61.472 55.000 0.00 0.00 34.04 4.26
4229 5474 2.031258 CTCTCGTGCAGAGTAGAGGA 57.969 55.000 11.37 0.00 46.86 3.71
4247 5492 1.736126 GGACTAGATCGTGTGACGTCA 59.264 52.381 15.76 15.76 43.14 4.35
4254 5499 0.028902 TCGTGTGACGTCAGTGTGAG 59.971 55.000 20.73 7.70 43.14 3.51
4255 5500 0.934901 CGTGTGACGTCAGTGTGAGG 60.935 60.000 20.73 2.89 36.74 3.86
4256 5501 0.102481 GTGTGACGTCAGTGTGAGGT 59.898 55.000 20.73 2.04 46.67 3.85
4262 5507 0.875908 CGTCAGTGTGAGGTGGTGTG 60.876 60.000 0.00 0.00 0.00 3.82
4276 5521 2.996621 GTGGTGTGCTGAATGTACTCTC 59.003 50.000 0.00 0.00 32.31 3.20
4277 5522 2.632512 TGGTGTGCTGAATGTACTCTCA 59.367 45.455 0.00 0.00 32.31 3.27
4279 5524 4.466015 TGGTGTGCTGAATGTACTCTCATA 59.534 41.667 0.00 0.00 32.31 2.15
4281 5526 5.874810 GGTGTGCTGAATGTACTCTCATAAA 59.125 40.000 0.00 0.00 32.31 1.40
4282 5527 6.540189 GGTGTGCTGAATGTACTCTCATAAAT 59.460 38.462 0.00 0.00 32.31 1.40
4283 5528 7.254590 GGTGTGCTGAATGTACTCTCATAAATC 60.255 40.741 0.00 0.00 32.31 2.17
4284 5529 6.476706 TGTGCTGAATGTACTCTCATAAATCG 59.523 38.462 0.00 0.00 32.31 3.34
4285 5530 6.697455 GTGCTGAATGTACTCTCATAAATCGA 59.303 38.462 0.00 0.00 0.00 3.59
4286 5531 7.222805 GTGCTGAATGTACTCTCATAAATCGAA 59.777 37.037 0.00 0.00 0.00 3.71
4287 5532 7.928167 TGCTGAATGTACTCTCATAAATCGAAT 59.072 33.333 0.00 0.00 0.00 3.34
4288 5533 9.411801 GCTGAATGTACTCTCATAAATCGAATA 57.588 33.333 0.00 0.00 0.00 1.75
4292 5537 9.935241 AATGTACTCTCATAAATCGAATATGCT 57.065 29.630 13.83 3.21 32.07 3.79
4293 5538 9.935241 ATGTACTCTCATAAATCGAATATGCTT 57.065 29.630 13.83 4.26 32.07 3.91
4294 5539 9.411801 TGTACTCTCATAAATCGAATATGCTTC 57.588 33.333 13.83 5.25 32.07 3.86
4295 5540 9.411801 GTACTCTCATAAATCGAATATGCTTCA 57.588 33.333 13.83 0.84 32.07 3.02
4296 5541 8.304202 ACTCTCATAAATCGAATATGCTTCAC 57.696 34.615 13.83 0.00 32.07 3.18
4297 5542 7.928167 ACTCTCATAAATCGAATATGCTTCACA 59.072 33.333 13.83 0.03 32.07 3.58
4298 5543 8.076714 TCTCATAAATCGAATATGCTTCACAC 57.923 34.615 13.83 0.00 32.07 3.82
4299 5544 7.710475 TCTCATAAATCGAATATGCTTCACACA 59.290 33.333 13.83 0.00 32.07 3.72
4300 5545 7.630026 TCATAAATCGAATATGCTTCACACAC 58.370 34.615 13.83 0.00 32.07 3.82
4301 5546 4.520743 AATCGAATATGCTTCACACACG 57.479 40.909 0.00 0.00 0.00 4.49
4302 5547 3.224884 TCGAATATGCTTCACACACGA 57.775 42.857 0.00 0.00 0.00 4.35
4303 5548 2.921121 TCGAATATGCTTCACACACGAC 59.079 45.455 0.00 0.00 0.00 4.34
4304 5549 2.666022 CGAATATGCTTCACACACGACA 59.334 45.455 0.00 0.00 0.00 4.35
4305 5550 3.122780 CGAATATGCTTCACACACGACAA 59.877 43.478 0.00 0.00 0.00 3.18
4306 5551 4.201714 CGAATATGCTTCACACACGACAAT 60.202 41.667 0.00 0.00 0.00 2.71
4307 5552 5.627499 AATATGCTTCACACACGACAATT 57.373 34.783 0.00 0.00 0.00 2.32
4308 5553 2.753989 TGCTTCACACACGACAATTG 57.246 45.000 3.24 3.24 0.00 2.32
4309 5554 1.268488 TGCTTCACACACGACAATTGC 60.268 47.619 5.05 0.00 0.00 3.56
4310 5555 1.002468 GCTTCACACACGACAATTGCT 60.002 47.619 5.05 0.00 0.00 3.91
4311 5556 2.908634 CTTCACACACGACAATTGCTC 58.091 47.619 5.05 1.81 0.00 4.26
4312 5557 2.238942 TCACACACGACAATTGCTCT 57.761 45.000 5.05 0.00 0.00 4.09
4313 5558 2.135139 TCACACACGACAATTGCTCTC 58.865 47.619 5.05 0.00 0.00 3.20
4314 5559 1.866601 CACACACGACAATTGCTCTCA 59.133 47.619 5.05 0.00 0.00 3.27
4315 5560 1.867233 ACACACGACAATTGCTCTCAC 59.133 47.619 5.05 0.00 0.00 3.51
4316 5561 1.136529 CACACGACAATTGCTCTCACG 60.137 52.381 5.05 4.99 0.00 4.35
4317 5562 1.269569 ACACGACAATTGCTCTCACGA 60.270 47.619 5.05 0.00 0.00 4.35
4318 5563 1.388093 CACGACAATTGCTCTCACGAG 59.612 52.381 5.05 0.00 40.35 4.18
4319 5564 1.000163 ACGACAATTGCTCTCACGAGT 60.000 47.619 5.05 0.00 39.53 4.18
4320 5565 1.651138 CGACAATTGCTCTCACGAGTC 59.349 52.381 5.05 0.00 39.53 3.36
4321 5566 2.669670 CGACAATTGCTCTCACGAGTCT 60.670 50.000 5.05 0.00 39.53 3.24
4322 5567 3.426292 CGACAATTGCTCTCACGAGTCTA 60.426 47.826 5.05 0.00 39.53 2.59
4323 5568 4.101942 GACAATTGCTCTCACGAGTCTAG 58.898 47.826 5.05 0.00 39.53 2.43
4324 5569 3.119316 ACAATTGCTCTCACGAGTCTAGG 60.119 47.826 5.05 0.00 39.53 3.02
4325 5570 2.491675 TTGCTCTCACGAGTCTAGGA 57.508 50.000 0.00 0.00 39.53 2.94
4326 5571 1.740297 TGCTCTCACGAGTCTAGGAC 58.260 55.000 0.00 0.00 39.53 3.85
4327 5572 0.653636 GCTCTCACGAGTCTAGGACG 59.346 60.000 0.00 0.00 39.53 4.79
4328 5573 1.739707 GCTCTCACGAGTCTAGGACGA 60.740 57.143 10.05 0.00 39.53 4.20
4329 5574 2.828877 CTCTCACGAGTCTAGGACGAT 58.171 52.381 10.05 0.00 37.67 3.73
4330 5575 2.542178 CTCTCACGAGTCTAGGACGATG 59.458 54.545 10.05 6.05 37.67 3.84
4331 5576 1.600013 CTCACGAGTCTAGGACGATGG 59.400 57.143 10.05 2.12 37.67 3.51
4332 5577 0.029567 CACGAGTCTAGGACGATGGC 59.970 60.000 10.05 0.00 37.67 4.40
4333 5578 0.107116 ACGAGTCTAGGACGATGGCT 60.107 55.000 10.05 0.00 37.67 4.75
4334 5579 1.025812 CGAGTCTAGGACGATGGCTT 58.974 55.000 0.00 0.00 37.67 4.35
4335 5580 2.219458 CGAGTCTAGGACGATGGCTTA 58.781 52.381 0.00 0.00 37.67 3.09
4336 5581 2.814919 CGAGTCTAGGACGATGGCTTAT 59.185 50.000 0.00 0.00 37.67 1.73
4337 5582 3.253677 CGAGTCTAGGACGATGGCTTATT 59.746 47.826 0.00 0.00 37.67 1.40
4338 5583 4.614078 CGAGTCTAGGACGATGGCTTATTC 60.614 50.000 0.00 0.00 37.67 1.75
4339 5584 4.215908 AGTCTAGGACGATGGCTTATTCA 58.784 43.478 0.00 0.00 37.67 2.57
4340 5585 4.649674 AGTCTAGGACGATGGCTTATTCAA 59.350 41.667 0.00 0.00 37.67 2.69
4341 5586 4.745620 GTCTAGGACGATGGCTTATTCAAC 59.254 45.833 0.00 0.00 0.00 3.18
4342 5587 3.627395 AGGACGATGGCTTATTCAACA 57.373 42.857 0.00 0.00 0.00 3.33
4343 5588 3.535561 AGGACGATGGCTTATTCAACAG 58.464 45.455 0.00 0.00 0.00 3.16
4344 5589 3.055094 AGGACGATGGCTTATTCAACAGT 60.055 43.478 0.00 0.00 0.00 3.55
4345 5590 3.063997 GGACGATGGCTTATTCAACAGTG 59.936 47.826 0.00 0.00 0.00 3.66
4346 5591 2.420022 ACGATGGCTTATTCAACAGTGC 59.580 45.455 0.00 0.00 0.00 4.40
4347 5592 2.679837 CGATGGCTTATTCAACAGTGCT 59.320 45.455 0.00 0.00 0.00 4.40
4348 5593 3.486375 CGATGGCTTATTCAACAGTGCTG 60.486 47.826 0.00 0.00 0.00 4.41
4350 5595 2.553602 TGGCTTATTCAACAGTGCTGTG 59.446 45.455 5.53 1.26 44.13 3.66
4351 5596 2.589014 GCTTATTCAACAGTGCTGTGC 58.411 47.619 5.53 0.00 44.13 4.57
4352 5597 2.030893 GCTTATTCAACAGTGCTGTGCA 60.031 45.455 5.53 0.00 44.13 4.57
4353 5598 3.818387 CTTATTCAACAGTGCTGTGCAG 58.182 45.455 5.53 0.00 44.13 4.41
4354 5599 1.683943 ATTCAACAGTGCTGTGCAGT 58.316 45.000 5.53 0.00 44.13 4.40
4355 5600 1.462616 TTCAACAGTGCTGTGCAGTT 58.537 45.000 5.53 0.00 44.13 3.16
4356 5601 1.462616 TCAACAGTGCTGTGCAGTTT 58.537 45.000 5.53 0.00 44.13 2.66
4357 5602 1.818060 TCAACAGTGCTGTGCAGTTTT 59.182 42.857 5.53 0.00 44.13 2.43
4358 5603 1.921887 CAACAGTGCTGTGCAGTTTTG 59.078 47.619 5.53 10.51 44.13 2.44
4370 5615 2.145536 GCAGTTTTGCCTTTCCAATGG 58.854 47.619 0.00 0.00 44.74 3.16
4371 5616 2.224257 GCAGTTTTGCCTTTCCAATGGA 60.224 45.455 0.00 0.00 44.74 3.41
4372 5617 3.392882 CAGTTTTGCCTTTCCAATGGAC 58.607 45.455 0.00 0.00 0.00 4.02
4373 5618 3.070015 CAGTTTTGCCTTTCCAATGGACT 59.930 43.478 0.00 0.00 0.00 3.85
4374 5619 3.070015 AGTTTTGCCTTTCCAATGGACTG 59.930 43.478 0.00 0.00 0.00 3.51
4375 5620 1.631405 TTGCCTTTCCAATGGACTGG 58.369 50.000 0.00 8.45 37.87 4.00
4376 5621 0.776810 TGCCTTTCCAATGGACTGGA 59.223 50.000 19.74 3.44 43.99 3.86
4377 5622 1.177401 GCCTTTCCAATGGACTGGAC 58.823 55.000 19.74 9.86 45.37 4.02
4378 5623 1.272147 GCCTTTCCAATGGACTGGACT 60.272 52.381 19.74 0.00 45.37 3.85
4379 5624 2.440409 CCTTTCCAATGGACTGGACTG 58.560 52.381 12.68 0.00 45.37 3.51
4380 5625 2.224867 CCTTTCCAATGGACTGGACTGT 60.225 50.000 12.68 0.00 45.37 3.55
4381 5626 3.009033 CCTTTCCAATGGACTGGACTGTA 59.991 47.826 12.68 0.00 45.37 2.74
4382 5627 3.981071 TTCCAATGGACTGGACTGTAG 57.019 47.619 0.00 0.00 45.37 2.74
4383 5628 2.902608 TCCAATGGACTGGACTGTAGT 58.097 47.619 0.00 0.00 40.71 2.73
4384 5629 4.055710 TCCAATGGACTGGACTGTAGTA 57.944 45.455 0.00 0.00 40.71 1.82
4385 5630 4.023980 TCCAATGGACTGGACTGTAGTAG 58.976 47.826 0.00 0.00 40.71 2.57
4386 5631 3.769844 CCAATGGACTGGACTGTAGTAGT 59.230 47.826 0.00 0.00 44.02 2.73
4387 5632 4.954202 CCAATGGACTGGACTGTAGTAGTA 59.046 45.833 0.00 0.00 40.53 1.82
4388 5633 5.163540 CCAATGGACTGGACTGTAGTAGTAC 60.164 48.000 0.00 0.37 40.53 2.73
4389 5634 4.923516 TGGACTGGACTGTAGTAGTACT 57.076 45.455 8.14 8.14 41.17 2.73
4390 5635 4.841422 TGGACTGGACTGTAGTAGTACTC 58.159 47.826 5.96 0.00 41.17 2.59
4391 5636 4.198530 GGACTGGACTGTAGTAGTACTCC 58.801 52.174 5.96 8.75 41.17 3.85
4392 5637 3.870419 GACTGGACTGTAGTAGTACTCCG 59.130 52.174 5.96 7.47 41.17 4.63
4393 5638 3.204526 CTGGACTGTAGTAGTACTCCGG 58.795 54.545 5.96 2.82 41.17 5.14
4394 5639 1.946081 GGACTGTAGTAGTACTCCGGC 59.054 57.143 5.96 0.00 40.53 6.13
4395 5640 2.636830 GACTGTAGTAGTACTCCGGCA 58.363 52.381 5.96 1.86 40.53 5.69
4396 5641 2.613133 GACTGTAGTAGTACTCCGGCAG 59.387 54.545 5.96 12.80 40.53 4.85
4397 5642 1.334243 CTGTAGTAGTACTCCGGCAGC 59.666 57.143 5.96 0.00 0.00 5.25
4398 5643 0.307146 GTAGTAGTACTCCGGCAGCG 59.693 60.000 5.96 0.00 0.00 5.18
4399 5644 1.442526 TAGTAGTACTCCGGCAGCGC 61.443 60.000 5.96 0.00 0.00 5.92
4400 5645 3.884350 TAGTACTCCGGCAGCGCG 61.884 66.667 0.00 0.00 0.00 6.86
4414 5659 1.166531 AGCGCGCCCCTCATAAATTC 61.167 55.000 30.33 0.00 0.00 2.17
4432 5677 0.038983 TCGCATTTCGGACTCGTTGA 60.039 50.000 0.00 0.00 39.05 3.18
4445 5697 3.839293 ACTCGTTGAACAGCAGTAGATC 58.161 45.455 0.00 0.00 0.00 2.75
4462 5714 0.745845 ATCTTGCAGTTAGCCTGGCG 60.746 55.000 13.96 0.00 44.83 5.69
4463 5715 1.672356 CTTGCAGTTAGCCTGGCGT 60.672 57.895 13.96 4.43 44.83 5.68
4543 5800 3.626924 GAGACCACGGCCCAGTGT 61.627 66.667 9.57 0.00 40.33 3.55
4547 5804 4.954970 CCACGGCCCAGTGTTGCT 62.955 66.667 9.57 0.00 40.33 3.91
4571 5828 1.327303 CAGCTAGCTCTTCGGGATCT 58.673 55.000 16.15 0.00 0.00 2.75
4572 5829 1.686052 CAGCTAGCTCTTCGGGATCTT 59.314 52.381 16.15 0.00 0.00 2.40
4575 5832 0.385751 TAGCTCTTCGGGATCTTGCG 59.614 55.000 0.00 0.00 0.00 4.85
4576 5833 1.884926 GCTCTTCGGGATCTTGCGG 60.885 63.158 0.00 0.00 0.00 5.69
4577 5834 1.884926 CTCTTCGGGATCTTGCGGC 60.885 63.158 0.00 0.00 0.00 6.53
4578 5835 2.125147 CTTCGGGATCTTGCGGCA 60.125 61.111 0.00 0.00 0.00 5.69
4616 5873 2.749621 GCCCTAAAATATGCCGAGGATG 59.250 50.000 0.00 0.00 0.00 3.51
4639 5896 1.000612 AGGAGAAGACGAGGACCCC 59.999 63.158 0.00 0.00 0.00 4.95
4640 5897 2.059190 GGAGAAGACGAGGACCCCC 61.059 68.421 0.00 0.00 0.00 5.40
4663 5920 3.822192 TCGCCTCCATCGACACGG 61.822 66.667 0.00 0.00 0.00 4.94
4665 5922 4.148825 GCCTCCATCGACACGGCT 62.149 66.667 8.98 0.00 37.76 5.52
4666 5923 2.202797 CCTCCATCGACACGGCTG 60.203 66.667 0.00 0.00 0.00 4.85
4672 5929 1.141881 ATCGACACGGCTGGATCAC 59.858 57.895 0.00 0.00 0.00 3.06
4715 5972 1.005037 GTGATGTCACCAGTGCCGA 60.005 57.895 1.68 0.00 40.85 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.664294 TGGAAAGTCATTGATTCATTGGG 57.336 39.130 8.31 0.00 0.00 4.12
66 67 4.709397 TGGTGGCTATTACCAATTGGAAAG 59.291 41.667 31.22 20.05 44.79 2.62
77 78 3.793559 ACGAGTCATTGGTGGCTATTAC 58.206 45.455 0.00 0.00 41.25 1.89
89 90 5.120208 CGTCAGGAAATTGTAACGAGTCATT 59.880 40.000 0.00 0.00 32.17 2.57
100 101 6.443792 GTTGGTAAAATCGTCAGGAAATTGT 58.556 36.000 0.00 0.00 0.00 2.71
107 108 2.690786 TCGGTTGGTAAAATCGTCAGG 58.309 47.619 0.00 0.00 0.00 3.86
115 116 3.308331 GGGGGTAGAATCGGTTGGTAAAA 60.308 47.826 0.00 0.00 0.00 1.52
158 159 1.015109 GCAGAGTGCAGATGTCATGG 58.985 55.000 0.00 0.00 44.26 3.66
191 192 4.636206 GGTTGATCTGTTAATGGTGAGGAC 59.364 45.833 0.00 0.00 0.00 3.85
202 203 4.160329 ACAGAGACTGGGTTGATCTGTTA 58.840 43.478 0.48 0.00 46.29 2.41
220 221 4.949856 GGGAGAAGGCAATGAATTTACAGA 59.050 41.667 0.00 0.00 0.00 3.41
236 237 1.112113 TCGATCGGAAAGGGGAGAAG 58.888 55.000 16.41 0.00 0.00 2.85
244 245 7.044641 CGCATTCTAGTATATTCGATCGGAAAG 60.045 40.741 16.41 5.66 38.36 2.62
269 277 1.002134 AGTGGCTGGATTGGGTTCG 60.002 57.895 0.00 0.00 0.00 3.95
296 304 3.129988 GCTGCCACTTTCATTGATAGCTT 59.870 43.478 0.00 0.00 0.00 3.74
341 349 0.774908 TGAACCATCTCCCCCGTTTT 59.225 50.000 0.00 0.00 0.00 2.43
345 353 2.590092 GGTGAACCATCTCCCCCG 59.410 66.667 0.00 0.00 33.89 5.73
515 534 2.510238 CTACGAGCACCAGCAGGC 60.510 66.667 0.00 0.00 45.49 4.85
698 717 1.123861 TGTGAGCAGCAGGAAGAGGT 61.124 55.000 0.00 0.00 0.00 3.85
712 731 3.325135 AGGAAGGAGGTTGTAAGTGTGAG 59.675 47.826 0.00 0.00 0.00 3.51
721 740 0.193574 TGGGAGAGGAAGGAGGTTGT 59.806 55.000 0.00 0.00 0.00 3.32
750 774 1.378762 CCAATCGGTGGTGTTCCCT 59.621 57.895 0.00 0.00 43.20 4.20
751 775 3.996614 CCAATCGGTGGTGTTCCC 58.003 61.111 0.00 0.00 43.20 3.97
766 796 0.539438 GGCCAACAAGTGATGGACCA 60.539 55.000 11.48 0.00 39.85 4.02
768 798 0.539438 TGGGCCAACAAGTGATGGAC 60.539 55.000 2.13 8.30 44.50 4.02
775 805 4.850193 CCTGATGGGCCAACAAGT 57.150 55.556 17.73 0.00 0.00 3.16
871 931 2.032030 TCTTTTCTTTTTGCGCCGAGAG 60.032 45.455 4.18 0.00 0.00 3.20
888 948 3.078305 TCCTCTCCTCTTCCCTTCTCTTT 59.922 47.826 0.00 0.00 0.00 2.52
905 965 3.703001 TCTTTTCTGCCGATTTCCTCT 57.297 42.857 0.00 0.00 0.00 3.69
906 966 4.766404 TTTCTTTTCTGCCGATTTCCTC 57.234 40.909 0.00 0.00 0.00 3.71
907 967 4.021981 CCTTTTCTTTTCTGCCGATTTCCT 60.022 41.667 0.00 0.00 0.00 3.36
908 968 4.237724 CCTTTTCTTTTCTGCCGATTTCC 58.762 43.478 0.00 0.00 0.00 3.13
909 969 3.675225 GCCTTTTCTTTTCTGCCGATTTC 59.325 43.478 0.00 0.00 0.00 2.17
1360 1420 8.616076 AGAATTCACTGATCAATTCGATAAACC 58.384 33.333 8.44 0.00 41.84 3.27
1386 1446 8.865420 TTTGGTTGGTTAATATGCAGTAACTA 57.135 30.769 14.07 8.10 35.90 2.24
1399 1459 8.000127 ACAGTAACCTATTCTTTGGTTGGTTAA 59.000 33.333 7.56 0.00 45.12 2.01
1402 1462 5.948842 ACAGTAACCTATTCTTTGGTTGGT 58.051 37.500 7.56 1.52 45.12 3.67
1403 1463 7.989416 TTACAGTAACCTATTCTTTGGTTGG 57.011 36.000 7.56 0.99 45.12 3.77
1404 1464 9.449719 AGATTACAGTAACCTATTCTTTGGTTG 57.550 33.333 7.56 0.00 45.12 3.77
1425 1485 9.565090 CAGGGTTCAATTCAATCATCTAGATTA 57.435 33.333 1.33 0.00 45.06 1.75
1429 1489 7.870509 TTCAGGGTTCAATTCAATCATCTAG 57.129 36.000 0.00 0.00 0.00 2.43
1430 1490 7.835682 ACATTCAGGGTTCAATTCAATCATCTA 59.164 33.333 0.00 0.00 0.00 1.98
1431 1491 6.666546 ACATTCAGGGTTCAATTCAATCATCT 59.333 34.615 0.00 0.00 0.00 2.90
1455 1520 8.203346 CGTGCAGTTAACGTGTATACAATATAC 58.797 37.037 7.25 3.08 36.31 1.47
1456 1521 8.127954 TCGTGCAGTTAACGTGTATACAATATA 58.872 33.333 7.25 0.00 41.70 0.86
1457 1522 6.974048 TCGTGCAGTTAACGTGTATACAATAT 59.026 34.615 7.25 0.00 41.70 1.28
1458 1523 6.251163 GTCGTGCAGTTAACGTGTATACAATA 59.749 38.462 7.25 0.00 41.70 1.90
1459 1524 5.061311 GTCGTGCAGTTAACGTGTATACAAT 59.939 40.000 7.25 0.00 41.70 2.71
1460 1525 4.382457 GTCGTGCAGTTAACGTGTATACAA 59.618 41.667 7.25 0.00 41.70 2.41
1461 1526 3.913763 GTCGTGCAGTTAACGTGTATACA 59.086 43.478 0.08 0.08 41.70 2.29
1462 1527 4.029861 CAGTCGTGCAGTTAACGTGTATAC 59.970 45.833 0.00 0.00 41.70 1.47
1504 1570 9.896645 AAGTTCAGTGTGTGAGATTATAATCAT 57.103 29.630 24.00 11.45 37.89 2.45
1505 1571 9.154847 CAAGTTCAGTGTGTGAGATTATAATCA 57.845 33.333 24.00 6.47 37.89 2.57
1506 1572 9.155975 ACAAGTTCAGTGTGTGAGATTATAATC 57.844 33.333 16.35 16.35 36.21 1.75
1546 1612 9.265862 TCATCCAAAATCAATGGGTTATTAACT 57.734 29.630 6.52 0.00 38.54 2.24
1549 1615 9.883142 GTTTCATCCAAAATCAATGGGTTATTA 57.117 29.630 0.00 0.00 38.54 0.98
1550 1616 8.381636 TGTTTCATCCAAAATCAATGGGTTATT 58.618 29.630 0.00 0.00 38.54 1.40
1551 1617 7.915930 TGTTTCATCCAAAATCAATGGGTTAT 58.084 30.769 0.00 0.00 38.54 1.89
1553 1619 6.185114 TGTTTCATCCAAAATCAATGGGTT 57.815 33.333 0.00 0.00 38.54 4.11
1554 1620 5.822132 TGTTTCATCCAAAATCAATGGGT 57.178 34.783 0.00 0.00 38.54 4.51
1555 1621 7.229106 AGTTTTGTTTCATCCAAAATCAATGGG 59.771 33.333 0.00 0.00 42.04 4.00
1556 1622 8.071368 CAGTTTTGTTTCATCCAAAATCAATGG 58.929 33.333 0.00 0.00 42.04 3.16
1557 1623 8.828644 TCAGTTTTGTTTCATCCAAAATCAATG 58.171 29.630 0.00 0.00 42.04 2.82
1558 1624 8.961294 TCAGTTTTGTTTCATCCAAAATCAAT 57.039 26.923 0.00 0.00 42.04 2.57
1559 1625 8.961294 ATCAGTTTTGTTTCATCCAAAATCAA 57.039 26.923 0.00 0.00 42.04 2.57
1560 1626 8.961294 AATCAGTTTTGTTTCATCCAAAATCA 57.039 26.923 0.00 0.00 42.04 2.57
1576 1835 9.668497 GAATAGTCAAGGTACCTAATCAGTTTT 57.332 33.333 16.67 2.86 0.00 2.43
1770 2244 6.530534 GTCGCACTGTTGACTTACATACTTAT 59.469 38.462 3.38 0.00 32.37 1.73
1792 2266 4.153117 CAGAACCATCAAAAAGAGAGGTCG 59.847 45.833 0.00 0.00 37.54 4.79
1807 2281 2.624838 CTGTTTTGGCTGTCAGAACCAT 59.375 45.455 12.37 0.00 39.06 3.55
1809 2283 2.024414 ACTGTTTTGGCTGTCAGAACC 58.976 47.619 12.37 0.00 39.06 3.62
1821 2295 9.265901 CCCTCATGAGATATACTAACTGTTTTG 57.734 37.037 24.62 0.35 0.00 2.44
1832 2306 6.070538 ACCAATGCTACCCTCATGAGATATAC 60.071 42.308 24.62 10.66 0.00 1.47
1997 2471 4.642429 AGCCACAGTAACAGAAAGGTAAG 58.358 43.478 0.00 0.00 0.00 2.34
2048 2524 3.812156 ATCACATTGCCACATGGATTG 57.188 42.857 0.87 0.00 37.39 2.67
2050 2526 3.225104 GGTATCACATTGCCACATGGAT 58.775 45.455 0.87 0.00 37.39 3.41
2167 2908 9.403110 CAGAAAGTTGAACAGAGGAAATTAATG 57.597 33.333 0.00 0.00 0.00 1.90
2178 2919 1.599071 CGCAGCAGAAAGTTGAACAGA 59.401 47.619 0.00 0.00 0.00 3.41
2199 2940 5.862924 TTTTTATCTTGCTCAGGAAGTCG 57.137 39.130 5.74 0.00 0.00 4.18
2322 3064 4.755411 CAGAACTATAGAACGGCCAAAGA 58.245 43.478 6.78 0.00 0.00 2.52
2330 3072 4.677378 CGAATCTGGCAGAACTATAGAACG 59.323 45.833 22.84 11.95 0.00 3.95
2352 3131 4.494350 AGCATGCAGATTTAATAAGCCG 57.506 40.909 21.98 0.00 0.00 5.52
2373 3152 6.825610 AGAAAAATGGGCTTCACAACAATTA 58.174 32.000 0.00 0.00 0.00 1.40
2632 3420 8.196771 AGCACATCAGTTGAGAAAAATTAAACA 58.803 29.630 0.00 0.00 0.00 2.83
2643 3431 2.831597 CGCAGCACATCAGTTGAGA 58.168 52.632 0.00 0.00 0.00 3.27
2690 3478 1.901159 TGCATTGGCTTTGTTATGGCT 59.099 42.857 0.00 0.00 41.91 4.75
2844 3794 5.621193 ACAGTGTAATGTTCCTACTTGCTT 58.379 37.500 0.00 0.00 0.00 3.91
2847 3797 6.481976 TGTTGACAGTGTAATGTTCCTACTTG 59.518 38.462 0.00 0.00 32.25 3.16
2850 3800 8.542497 TTATGTTGACAGTGTAATGTTCCTAC 57.458 34.615 0.00 0.00 32.25 3.18
2890 3840 0.687920 GGCCTAGGATCCCACTTAGC 59.312 60.000 14.75 3.17 0.00 3.09
2891 3841 2.407340 AGGCCTAGGATCCCACTTAG 57.593 55.000 14.75 3.34 0.00 2.18
3006 4062 2.270352 TAACCCTGCACTTGAACCTG 57.730 50.000 0.00 0.00 0.00 4.00
3152 4238 3.181454 TGGAAGTCACAAAGAGGGAGAAC 60.181 47.826 0.00 0.00 0.00 3.01
3221 4312 5.457148 CAGATCGTACACTAAGCAATCACTC 59.543 44.000 0.00 0.00 0.00 3.51
3355 4462 1.310933 CCAGCAGCACTCAATGGGAC 61.311 60.000 0.00 0.00 0.00 4.46
3356 4463 1.001764 CCAGCAGCACTCAATGGGA 60.002 57.895 0.00 0.00 0.00 4.37
3366 4473 0.698238 AATTCCTGTACCCAGCAGCA 59.302 50.000 0.00 0.00 37.38 4.41
3367 4474 1.474077 CAAATTCCTGTACCCAGCAGC 59.526 52.381 0.00 0.00 37.38 5.25
3368 4475 1.474077 GCAAATTCCTGTACCCAGCAG 59.526 52.381 0.00 0.00 37.38 4.24
3392 4499 6.603201 CCTTCTTGCAGAGTAAATCCCATTTA 59.397 38.462 0.00 0.00 33.82 1.40
3426 4551 5.824624 ACAAGCCCATGTCAGAATAATACAG 59.175 40.000 0.00 0.00 0.00 2.74
3479 4604 0.241749 ATGAAACGACGTAGGCGACA 59.758 50.000 0.00 0.00 42.00 4.35
3509 4634 1.303236 CAAACCCACTGATCCCGCA 60.303 57.895 0.00 0.00 0.00 5.69
3512 4637 1.256812 CCAACAAACCCACTGATCCC 58.743 55.000 0.00 0.00 0.00 3.85
3584 4709 2.033832 CACAAAAACGCATTGCAGAACC 60.034 45.455 9.69 0.00 0.00 3.62
3646 4771 0.527817 AACGAATTAGGGAGCGAGCG 60.528 55.000 0.00 0.00 0.00 5.03
3647 4772 1.209998 GAACGAATTAGGGAGCGAGC 58.790 55.000 0.00 0.00 0.00 5.03
3664 4789 0.466543 ACACGTACTGGCCAAGTGAA 59.533 50.000 26.66 5.76 40.26 3.18
3695 4821 2.251642 AACCCGCTGCAAAGACGAC 61.252 57.895 0.00 0.00 0.00 4.34
3753 4882 3.416119 ACGTCTTCGCGAGATTTGATA 57.584 42.857 9.59 0.00 41.60 2.15
3757 4886 3.572584 ACTAAACGTCTTCGCGAGATTT 58.427 40.909 9.59 9.31 41.60 2.17
3758 4887 3.169733 GACTAAACGTCTTCGCGAGATT 58.830 45.455 9.59 1.08 39.61 2.40
3759 4888 2.783333 GACTAAACGTCTTCGCGAGAT 58.217 47.619 9.59 0.00 39.61 2.75
3760 4889 2.238245 GACTAAACGTCTTCGCGAGA 57.762 50.000 9.59 6.53 39.61 4.04
3774 4930 3.696051 GACCACACACGGGTATAGACTAA 59.304 47.826 0.00 0.00 39.19 2.24
3932 5121 0.760189 AAGCCACCAAGCACCACAAT 60.760 50.000 0.00 0.00 34.23 2.71
3951 5140 4.471025 TCCAATCTCAATGCTAACCTCTCA 59.529 41.667 0.00 0.00 0.00 3.27
4021 5210 8.084684 GCTTTAATGGAGTCAACTGAATTTTCT 58.915 33.333 0.00 0.00 0.00 2.52
4102 5298 0.108138 GCAACGGCATCTGGTCTACT 60.108 55.000 0.00 0.00 40.72 2.57
4103 5299 2.384203 GCAACGGCATCTGGTCTAC 58.616 57.895 0.00 0.00 40.72 2.59
4104 5300 4.932789 GCAACGGCATCTGGTCTA 57.067 55.556 0.00 0.00 40.72 2.59
4152 5397 0.036306 ACCCCAATCGACTGACCAAC 59.964 55.000 0.00 0.00 0.00 3.77
4155 5400 0.108138 CTCACCCCAATCGACTGACC 60.108 60.000 0.00 0.00 0.00 4.02
4166 5411 1.951209 TTACTGATGCTCTCACCCCA 58.049 50.000 0.00 0.00 0.00 4.96
4167 5412 4.899352 ATATTACTGATGCTCTCACCCC 57.101 45.455 0.00 0.00 0.00 4.95
4168 5413 6.107901 AGAATATTACTGATGCTCTCACCC 57.892 41.667 0.00 0.00 0.00 4.61
4169 5414 7.172361 GGAAAGAATATTACTGATGCTCTCACC 59.828 40.741 0.00 0.00 0.00 4.02
4170 5415 7.712639 TGGAAAGAATATTACTGATGCTCTCAC 59.287 37.037 0.00 0.00 0.00 3.51
4171 5416 7.795047 TGGAAAGAATATTACTGATGCTCTCA 58.205 34.615 0.00 0.00 0.00 3.27
4172 5417 8.845413 ATGGAAAGAATATTACTGATGCTCTC 57.155 34.615 0.00 0.00 0.00 3.20
4173 5418 7.601886 CGATGGAAAGAATATTACTGATGCTCT 59.398 37.037 0.00 0.00 0.00 4.09
4174 5419 7.148507 CCGATGGAAAGAATATTACTGATGCTC 60.149 40.741 0.00 0.00 0.00 4.26
4175 5420 6.652481 CCGATGGAAAGAATATTACTGATGCT 59.348 38.462 0.00 0.00 0.00 3.79
4176 5421 6.621596 GCCGATGGAAAGAATATTACTGATGC 60.622 42.308 0.00 0.00 0.00 3.91
4177 5422 6.652481 AGCCGATGGAAAGAATATTACTGATG 59.348 38.462 0.00 0.00 0.00 3.07
4178 5423 6.773638 AGCCGATGGAAAGAATATTACTGAT 58.226 36.000 0.00 0.00 0.00 2.90
4179 5424 6.174720 AGCCGATGGAAAGAATATTACTGA 57.825 37.500 0.00 0.00 0.00 3.41
4180 5425 6.708054 AGAAGCCGATGGAAAGAATATTACTG 59.292 38.462 0.00 0.00 0.00 2.74
4181 5426 6.831976 AGAAGCCGATGGAAAGAATATTACT 58.168 36.000 0.00 0.00 0.00 2.24
4182 5427 7.355778 CAAGAAGCCGATGGAAAGAATATTAC 58.644 38.462 0.00 0.00 0.00 1.89
4183 5428 6.486657 CCAAGAAGCCGATGGAAAGAATATTA 59.513 38.462 0.00 0.00 36.27 0.98
4184 5429 5.300286 CCAAGAAGCCGATGGAAAGAATATT 59.700 40.000 0.00 0.00 36.27 1.28
4185 5430 4.823989 CCAAGAAGCCGATGGAAAGAATAT 59.176 41.667 0.00 0.00 36.27 1.28
4186 5431 4.199310 CCAAGAAGCCGATGGAAAGAATA 58.801 43.478 0.00 0.00 36.27 1.75
4187 5432 3.019564 CCAAGAAGCCGATGGAAAGAAT 58.980 45.455 0.00 0.00 36.27 2.40
4188 5433 2.436417 CCAAGAAGCCGATGGAAAGAA 58.564 47.619 0.00 0.00 36.27 2.52
4189 5434 1.340017 CCCAAGAAGCCGATGGAAAGA 60.340 52.381 0.00 0.00 36.27 2.52
4190 5435 1.098050 CCCAAGAAGCCGATGGAAAG 58.902 55.000 0.00 0.00 36.27 2.62
4191 5436 0.965363 GCCCAAGAAGCCGATGGAAA 60.965 55.000 0.00 0.00 36.27 3.13
4192 5437 1.378514 GCCCAAGAAGCCGATGGAA 60.379 57.895 0.00 0.00 36.27 3.53
4193 5438 2.257409 GAGCCCAAGAAGCCGATGGA 62.257 60.000 0.00 0.00 36.27 3.41
4194 5439 1.821332 GAGCCCAAGAAGCCGATGG 60.821 63.158 0.00 0.00 0.00 3.51
4195 5440 0.813210 GAGAGCCCAAGAAGCCGATG 60.813 60.000 0.00 0.00 0.00 3.84
4196 5441 1.524482 GAGAGCCCAAGAAGCCGAT 59.476 57.895 0.00 0.00 0.00 4.18
4197 5442 2.982130 GAGAGCCCAAGAAGCCGA 59.018 61.111 0.00 0.00 0.00 5.54
4198 5443 2.510238 CGAGAGCCCAAGAAGCCG 60.510 66.667 0.00 0.00 0.00 5.52
4199 5444 1.743252 CACGAGAGCCCAAGAAGCC 60.743 63.158 0.00 0.00 0.00 4.35
4200 5445 2.394563 GCACGAGAGCCCAAGAAGC 61.395 63.158 0.00 0.00 0.00 3.86
4201 5446 1.004560 TGCACGAGAGCCCAAGAAG 60.005 57.895 0.00 0.00 0.00 2.85
4202 5447 1.004560 CTGCACGAGAGCCCAAGAA 60.005 57.895 0.00 0.00 0.00 2.52
4203 5448 1.881903 CTCTGCACGAGAGCCCAAGA 61.882 60.000 7.22 0.00 42.03 3.02
4204 5449 1.447489 CTCTGCACGAGAGCCCAAG 60.447 63.158 7.22 0.00 42.03 3.61
4205 5450 2.659016 CTCTGCACGAGAGCCCAA 59.341 61.111 7.22 0.00 42.03 4.12
4211 5456 1.279558 AGTCCTCTACTCTGCACGAGA 59.720 52.381 16.81 0.00 42.62 4.04
4212 5457 1.745232 AGTCCTCTACTCTGCACGAG 58.255 55.000 10.48 10.48 45.56 4.18
4213 5458 2.500504 TCTAGTCCTCTACTCTGCACGA 59.499 50.000 0.00 0.00 39.80 4.35
4214 5459 2.907634 TCTAGTCCTCTACTCTGCACG 58.092 52.381 0.00 0.00 39.80 5.34
4215 5460 3.496884 CGATCTAGTCCTCTACTCTGCAC 59.503 52.174 0.00 0.00 39.80 4.57
4216 5461 3.134985 ACGATCTAGTCCTCTACTCTGCA 59.865 47.826 0.00 0.00 39.80 4.41
4217 5462 3.496884 CACGATCTAGTCCTCTACTCTGC 59.503 52.174 0.00 0.00 39.80 4.26
4218 5463 4.509970 CACACGATCTAGTCCTCTACTCTG 59.490 50.000 0.00 0.00 39.80 3.35
4219 5464 4.406326 TCACACGATCTAGTCCTCTACTCT 59.594 45.833 0.00 0.00 39.80 3.24
4220 5465 4.508861 GTCACACGATCTAGTCCTCTACTC 59.491 50.000 0.00 0.00 39.80 2.59
4221 5466 4.444536 GTCACACGATCTAGTCCTCTACT 58.555 47.826 0.00 0.00 42.62 2.57
4222 5467 3.245754 CGTCACACGATCTAGTCCTCTAC 59.754 52.174 0.00 0.00 46.05 2.59
4223 5468 3.118847 ACGTCACACGATCTAGTCCTCTA 60.119 47.826 2.48 0.00 46.05 2.43
4224 5469 2.281517 CGTCACACGATCTAGTCCTCT 58.718 52.381 0.00 0.00 46.05 3.69
4225 5470 2.008329 ACGTCACACGATCTAGTCCTC 58.992 52.381 2.48 0.00 46.05 3.71
4226 5471 2.008329 GACGTCACACGATCTAGTCCT 58.992 52.381 11.55 0.00 46.05 3.85
4227 5472 1.736126 TGACGTCACACGATCTAGTCC 59.264 52.381 15.76 0.00 46.05 3.85
4228 5473 2.415857 ACTGACGTCACACGATCTAGTC 59.584 50.000 15.76 0.00 46.05 2.59
4229 5474 2.159824 CACTGACGTCACACGATCTAGT 59.840 50.000 15.76 4.72 46.05 2.57
4247 5492 1.146930 CAGCACACCACCTCACACT 59.853 57.895 0.00 0.00 0.00 3.55
4254 5499 2.076863 GAGTACATTCAGCACACCACC 58.923 52.381 0.00 0.00 0.00 4.61
4255 5500 2.996621 GAGAGTACATTCAGCACACCAC 59.003 50.000 0.00 0.00 0.00 4.16
4256 5501 2.632512 TGAGAGTACATTCAGCACACCA 59.367 45.455 0.00 0.00 0.00 4.17
4262 5507 7.700322 TTCGATTTATGAGAGTACATTCAGC 57.300 36.000 0.00 0.00 0.00 4.26
4276 5521 6.571154 CGTGTGTGAAGCATATTCGATTTATG 59.429 38.462 10.16 10.16 0.00 1.90
4277 5522 6.478673 TCGTGTGTGAAGCATATTCGATTTAT 59.521 34.615 0.00 0.00 0.00 1.40
4279 5524 4.629634 TCGTGTGTGAAGCATATTCGATTT 59.370 37.500 0.00 0.00 0.00 2.17
4281 5526 3.551890 GTCGTGTGTGAAGCATATTCGAT 59.448 43.478 0.00 0.00 0.00 3.59
4282 5527 2.921121 GTCGTGTGTGAAGCATATTCGA 59.079 45.455 0.00 0.00 0.00 3.71
4283 5528 2.666022 TGTCGTGTGTGAAGCATATTCG 59.334 45.455 0.00 0.00 0.00 3.34
4284 5529 4.661993 TTGTCGTGTGTGAAGCATATTC 57.338 40.909 0.00 0.00 0.00 1.75
4285 5530 5.393124 CAATTGTCGTGTGTGAAGCATATT 58.607 37.500 0.00 0.00 0.00 1.28
4286 5531 4.672542 GCAATTGTCGTGTGTGAAGCATAT 60.673 41.667 7.40 0.00 0.00 1.78
4287 5532 3.364864 GCAATTGTCGTGTGTGAAGCATA 60.365 43.478 7.40 0.00 0.00 3.14
4288 5533 2.605338 GCAATTGTCGTGTGTGAAGCAT 60.605 45.455 7.40 0.00 0.00 3.79
4289 5534 1.268488 GCAATTGTCGTGTGTGAAGCA 60.268 47.619 7.40 0.00 0.00 3.91
4290 5535 1.002468 AGCAATTGTCGTGTGTGAAGC 60.002 47.619 7.40 0.00 0.00 3.86
4291 5536 2.545526 AGAGCAATTGTCGTGTGTGAAG 59.454 45.455 7.40 0.00 0.00 3.02
4292 5537 2.543848 GAGAGCAATTGTCGTGTGTGAA 59.456 45.455 7.40 0.00 0.00 3.18
4293 5538 2.135139 GAGAGCAATTGTCGTGTGTGA 58.865 47.619 7.40 0.00 0.00 3.58
4294 5539 1.866601 TGAGAGCAATTGTCGTGTGTG 59.133 47.619 7.40 0.00 0.00 3.82
4295 5540 1.867233 GTGAGAGCAATTGTCGTGTGT 59.133 47.619 7.40 0.00 0.00 3.72
4296 5541 1.136529 CGTGAGAGCAATTGTCGTGTG 60.137 52.381 7.40 0.00 0.00 3.82
4297 5542 1.139989 CGTGAGAGCAATTGTCGTGT 58.860 50.000 7.40 0.00 0.00 4.49
4298 5543 1.418373 TCGTGAGAGCAATTGTCGTG 58.582 50.000 7.40 0.00 34.84 4.35
4299 5544 3.886044 TCGTGAGAGCAATTGTCGT 57.114 47.368 7.40 0.00 34.84 4.34
4310 5555 2.552031 CATCGTCCTAGACTCGTGAGA 58.448 52.381 3.44 0.00 39.12 3.27
4311 5556 1.600013 CCATCGTCCTAGACTCGTGAG 59.400 57.143 0.00 0.00 0.00 3.51
4312 5557 1.664873 CCATCGTCCTAGACTCGTGA 58.335 55.000 0.00 0.00 0.00 4.35
4313 5558 0.029567 GCCATCGTCCTAGACTCGTG 59.970 60.000 0.00 0.00 0.00 4.35
4314 5559 0.107116 AGCCATCGTCCTAGACTCGT 60.107 55.000 0.00 0.00 0.00 4.18
4315 5560 1.025812 AAGCCATCGTCCTAGACTCG 58.974 55.000 0.00 0.00 0.00 4.18
4316 5561 4.278669 TGAATAAGCCATCGTCCTAGACTC 59.721 45.833 0.00 0.00 0.00 3.36
4317 5562 4.215908 TGAATAAGCCATCGTCCTAGACT 58.784 43.478 0.00 0.00 0.00 3.24
4318 5563 4.585955 TGAATAAGCCATCGTCCTAGAC 57.414 45.455 0.00 0.00 0.00 2.59
4319 5564 4.404394 TGTTGAATAAGCCATCGTCCTAGA 59.596 41.667 0.00 0.00 0.00 2.43
4320 5565 4.693283 TGTTGAATAAGCCATCGTCCTAG 58.307 43.478 0.00 0.00 0.00 3.02
4321 5566 4.161565 ACTGTTGAATAAGCCATCGTCCTA 59.838 41.667 0.00 0.00 0.00 2.94
4322 5567 3.055094 ACTGTTGAATAAGCCATCGTCCT 60.055 43.478 0.00 0.00 0.00 3.85
4323 5568 3.063997 CACTGTTGAATAAGCCATCGTCC 59.936 47.826 0.00 0.00 0.00 4.79
4324 5569 3.485877 GCACTGTTGAATAAGCCATCGTC 60.486 47.826 0.00 0.00 0.00 4.20
4325 5570 2.420022 GCACTGTTGAATAAGCCATCGT 59.580 45.455 0.00 0.00 0.00 3.73
4326 5571 2.679837 AGCACTGTTGAATAAGCCATCG 59.320 45.455 0.00 0.00 0.00 3.84
4327 5572 3.441572 ACAGCACTGTTGAATAAGCCATC 59.558 43.478 0.00 0.00 41.83 3.51
4328 5573 3.192001 CACAGCACTGTTGAATAAGCCAT 59.808 43.478 0.00 0.00 42.83 4.40
4329 5574 2.553602 CACAGCACTGTTGAATAAGCCA 59.446 45.455 0.00 0.00 42.83 4.75
4330 5575 2.669391 GCACAGCACTGTTGAATAAGCC 60.669 50.000 0.00 0.00 42.83 4.35
4331 5576 2.030893 TGCACAGCACTGTTGAATAAGC 60.031 45.455 0.00 0.50 42.83 3.09
4332 5577 3.251729 ACTGCACAGCACTGTTGAATAAG 59.748 43.478 0.00 0.00 42.83 1.73
4333 5578 3.213506 ACTGCACAGCACTGTTGAATAA 58.786 40.909 0.00 0.00 42.83 1.40
4334 5579 2.849942 ACTGCACAGCACTGTTGAATA 58.150 42.857 0.00 0.00 42.83 1.75
4335 5580 1.683943 ACTGCACAGCACTGTTGAAT 58.316 45.000 0.00 0.00 42.83 2.57
4336 5581 1.462616 AACTGCACAGCACTGTTGAA 58.537 45.000 0.00 0.00 42.83 2.69
4337 5582 1.462616 AAACTGCACAGCACTGTTGA 58.537 45.000 0.00 0.00 42.83 3.18
4338 5583 1.921887 CAAAACTGCACAGCACTGTTG 59.078 47.619 0.00 0.00 42.83 3.33
4339 5584 1.736696 GCAAAACTGCACAGCACTGTT 60.737 47.619 0.00 0.00 42.83 3.16
4340 5585 0.179129 GCAAAACTGCACAGCACTGT 60.179 50.000 0.00 0.00 46.17 3.55
4341 5586 0.872881 GGCAAAACTGCACAGCACTG 60.873 55.000 0.00 0.00 33.79 3.66
4342 5587 1.039233 AGGCAAAACTGCACAGCACT 61.039 50.000 0.00 0.00 33.79 4.40
4343 5588 0.179103 AAGGCAAAACTGCACAGCAC 60.179 50.000 0.00 0.00 33.79 4.40
4344 5589 0.536260 AAAGGCAAAACTGCACAGCA 59.464 45.000 0.00 0.00 36.92 4.41
4345 5590 1.211743 GAAAGGCAAAACTGCACAGC 58.788 50.000 0.00 0.00 36.33 4.40
4346 5591 1.136695 TGGAAAGGCAAAACTGCACAG 59.863 47.619 0.00 0.00 36.33 3.66
4347 5592 1.189752 TGGAAAGGCAAAACTGCACA 58.810 45.000 0.00 0.00 36.33 4.57
4348 5593 2.307934 TTGGAAAGGCAAAACTGCAC 57.692 45.000 0.00 0.00 36.33 4.57
4349 5594 2.485124 CCATTGGAAAGGCAAAACTGCA 60.485 45.455 0.00 0.00 36.33 4.41
4350 5595 2.145536 CCATTGGAAAGGCAAAACTGC 58.854 47.619 0.00 0.00 0.00 4.40
4351 5596 3.070015 AGTCCATTGGAAAGGCAAAACTG 59.930 43.478 7.05 0.00 31.38 3.16
4352 5597 3.070015 CAGTCCATTGGAAAGGCAAAACT 59.930 43.478 7.05 0.00 31.38 2.66
4353 5598 3.392882 CAGTCCATTGGAAAGGCAAAAC 58.607 45.455 7.05 0.00 31.38 2.43
4354 5599 2.368221 CCAGTCCATTGGAAAGGCAAAA 59.632 45.455 7.05 0.00 40.87 2.44
4355 5600 1.969923 CCAGTCCATTGGAAAGGCAAA 59.030 47.619 7.05 0.00 40.87 3.68
4356 5601 1.146774 TCCAGTCCATTGGAAAGGCAA 59.853 47.619 7.05 0.00 44.09 4.52
4357 5602 0.776810 TCCAGTCCATTGGAAAGGCA 59.223 50.000 7.05 0.74 44.09 4.75
4358 5603 3.670105 TCCAGTCCATTGGAAAGGC 57.330 52.632 7.05 0.00 44.09 4.35
4363 5608 2.902608 ACTACAGTCCAGTCCATTGGA 58.097 47.619 0.00 0.00 44.84 3.53
4364 5609 3.769844 ACTACTACAGTCCAGTCCATTGG 59.230 47.826 0.00 0.00 39.70 3.16
4365 5610 5.652891 AGTACTACTACAGTCCAGTCCATTG 59.347 44.000 0.00 0.00 38.80 2.82
4366 5611 5.828871 AGTACTACTACAGTCCAGTCCATT 58.171 41.667 0.00 0.00 38.80 3.16
4367 5612 5.438833 GAGTACTACTACAGTCCAGTCCAT 58.561 45.833 0.00 0.00 38.80 3.41
4368 5613 4.324099 GGAGTACTACTACAGTCCAGTCCA 60.324 50.000 0.00 0.00 36.15 4.02
4369 5614 4.198530 GGAGTACTACTACAGTCCAGTCC 58.801 52.174 0.00 0.00 38.80 3.85
4370 5615 3.870419 CGGAGTACTACTACAGTCCAGTC 59.130 52.174 2.99 0.00 38.80 3.51
4371 5616 3.370315 CCGGAGTACTACTACAGTCCAGT 60.370 52.174 2.99 0.00 38.80 4.00
4372 5617 3.204526 CCGGAGTACTACTACAGTCCAG 58.795 54.545 2.99 0.00 38.80 3.86
4373 5618 2.681976 GCCGGAGTACTACTACAGTCCA 60.682 54.545 5.05 0.00 38.80 4.02
4374 5619 1.946081 GCCGGAGTACTACTACAGTCC 59.054 57.143 5.05 0.00 38.80 3.85
4375 5620 2.613133 CTGCCGGAGTACTACTACAGTC 59.387 54.545 5.05 0.00 38.80 3.51
4376 5621 2.641305 CTGCCGGAGTACTACTACAGT 58.359 52.381 5.05 0.00 41.62 3.55
4377 5622 1.334243 GCTGCCGGAGTACTACTACAG 59.666 57.143 16.24 16.24 0.00 2.74
4378 5623 1.386533 GCTGCCGGAGTACTACTACA 58.613 55.000 5.05 0.06 0.00 2.74
4379 5624 0.307146 CGCTGCCGGAGTACTACTAC 59.693 60.000 5.05 0.00 0.00 2.73
4380 5625 1.442526 GCGCTGCCGGAGTACTACTA 61.443 60.000 5.05 0.00 34.32 1.82
4381 5626 2.772691 GCGCTGCCGGAGTACTACT 61.773 63.158 5.05 0.00 34.32 2.57
4382 5627 2.278661 GCGCTGCCGGAGTACTAC 60.279 66.667 5.05 0.00 34.32 2.73
4383 5628 3.884350 CGCGCTGCCGGAGTACTA 61.884 66.667 5.05 0.00 34.32 1.82
4394 5639 1.447317 AATTTATGAGGGGCGCGCTG 61.447 55.000 32.29 0.00 0.00 5.18
4395 5640 1.152963 AATTTATGAGGGGCGCGCT 60.153 52.632 32.29 11.92 0.00 5.92
4396 5641 1.282875 GAATTTATGAGGGGCGCGC 59.717 57.895 25.94 25.94 0.00 6.86
4397 5642 1.569493 CGAATTTATGAGGGGCGCG 59.431 57.895 0.00 0.00 0.00 6.86
4398 5643 1.282875 GCGAATTTATGAGGGGCGC 59.717 57.895 0.00 0.00 36.12 6.53
4399 5644 1.238439 ATGCGAATTTATGAGGGGCG 58.762 50.000 0.00 0.00 0.00 6.13
4400 5645 3.642705 GAAATGCGAATTTATGAGGGGC 58.357 45.455 0.00 0.00 0.00 5.80
4401 5646 3.304659 CCGAAATGCGAATTTATGAGGGG 60.305 47.826 0.00 0.00 44.57 4.79
4402 5647 3.563808 TCCGAAATGCGAATTTATGAGGG 59.436 43.478 0.00 0.00 44.57 4.30
4403 5648 4.273480 AGTCCGAAATGCGAATTTATGAGG 59.727 41.667 0.00 3.83 44.57 3.86
4404 5649 5.409643 AGTCCGAAATGCGAATTTATGAG 57.590 39.130 0.00 0.00 44.57 2.90
4405 5650 4.026062 CGAGTCCGAAATGCGAATTTATGA 60.026 41.667 0.00 0.00 44.57 2.15
4406 5651 4.203828 CGAGTCCGAAATGCGAATTTATG 58.796 43.478 0.00 0.00 44.57 1.90
4414 5659 0.787787 TTCAACGAGTCCGAAATGCG 59.212 50.000 0.00 0.00 39.50 4.73
4432 5677 3.692257 ACTGCAAGATCTACTGCTGTT 57.308 42.857 20.21 9.44 37.43 3.16
4445 5697 1.639298 GACGCCAGGCTAACTGCAAG 61.639 60.000 10.54 0.00 46.14 4.01
4462 5714 8.328864 CGCAATCTAACCTAATCTAAACAAGAC 58.671 37.037 0.00 0.00 36.93 3.01
4463 5715 8.038944 ACGCAATCTAACCTAATCTAAACAAGA 58.961 33.333 0.00 0.00 39.02 3.02
4513 5770 4.436998 GTCTCGTCCGGCAGGGTG 62.437 72.222 2.05 0.00 38.33 4.61
4516 5773 4.436998 GTGGTCTCGTCCGGCAGG 62.437 72.222 0.00 0.00 39.46 4.85
4517 5774 4.778415 CGTGGTCTCGTCCGGCAG 62.778 72.222 0.00 0.00 0.00 4.85
4547 5804 1.137614 CGAAGAGCTAGCTGCACGA 59.862 57.895 24.99 0.00 45.94 4.35
4576 5833 4.357279 AAGGGTCAGCCTGCCTGC 62.357 66.667 0.00 0.00 41.50 4.85
4577 5834 2.360852 CAAGGGTCAGCCTGCCTG 60.361 66.667 0.00 0.00 43.17 4.85
4578 5835 3.655211 CCAAGGGTCAGCCTGCCT 61.655 66.667 0.00 0.00 34.45 4.75
4616 5873 2.776913 CCTCGTCTTCTCCTCCGCC 61.777 68.421 0.00 0.00 0.00 6.13
4639 5896 2.509336 GATGGAGGCGACACGTGG 60.509 66.667 21.57 3.72 0.00 4.94
4640 5897 2.880879 CGATGGAGGCGACACGTG 60.881 66.667 15.48 15.48 0.00 4.49
4652 5909 1.592669 GATCCAGCCGTGTCGATGG 60.593 63.158 0.00 0.00 35.76 3.51
4663 5920 4.796231 ACGCGACGGTGATCCAGC 62.796 66.667 15.93 0.00 0.00 4.85
4664 5921 1.683790 GAAACGCGACGGTGATCCAG 61.684 60.000 15.93 0.00 0.00 3.86
4665 5922 1.735198 GAAACGCGACGGTGATCCA 60.735 57.895 15.93 0.00 0.00 3.41
4666 5923 2.450345 GGAAACGCGACGGTGATCC 61.450 63.158 15.93 5.46 0.00 3.36
4715 5972 3.823330 GAGACGCCACGGACGGAT 61.823 66.667 0.00 0.00 34.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.