Multiple sequence alignment - TraesCS5D01G242100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G242100 chr5D 100.000 3707 0 0 1 3707 350735825 350732119 0.000000e+00 6846.0
1 TraesCS5D01G242100 chr5D 96.279 833 30 1 1 832 324790030 324789198 0.000000e+00 1365.0
2 TraesCS5D01G242100 chr5D 95.923 834 32 2 1 832 524990997 524990164 0.000000e+00 1351.0
3 TraesCS5D01G242100 chr5A 94.049 1714 87 12 988 2690 451254989 451253280 0.000000e+00 2586.0
4 TraesCS5D01G242100 chr5A 83.811 1464 202 25 1100 2542 709519974 709518525 0.000000e+00 1358.0
5 TraesCS5D01G242100 chr5A 90.811 370 24 7 3112 3478 451251639 451251277 1.550000e-133 486.0
6 TraesCS5D01G242100 chr5A 92.697 178 9 4 833 1008 451255176 451255001 1.710000e-63 254.0
7 TraesCS5D01G242100 chr5A 92.547 161 6 3 2679 2838 451251792 451251637 3.730000e-55 226.0
8 TraesCS5D01G242100 chr5A 78.571 196 37 5 1120 1314 697706299 697706108 1.400000e-24 124.0
9 TraesCS5D01G242100 chr5A 84.375 96 14 1 3527 3621 208808921 208808826 3.940000e-15 93.5
10 TraesCS5D01G242100 chr1D 84.683 1482 196 21 1081 2542 485942687 485944157 0.000000e+00 1450.0
11 TraesCS5D01G242100 chr1D 73.371 537 115 20 1120 1642 485963936 485964458 1.370000e-39 174.0
12 TraesCS5D01G242100 chr4B 84.404 1494 187 29 1081 2542 671854938 671853459 0.000000e+00 1426.0
13 TraesCS5D01G242100 chr4B 95.833 48 2 0 1248 1295 671902411 671902364 1.100000e-10 78.7
14 TraesCS5D01G242100 chr6D 96.639 833 27 1 1 832 435477332 435478164 0.000000e+00 1382.0
15 TraesCS5D01G242100 chr6D 96.519 833 28 1 1 832 349777589 349778421 0.000000e+00 1376.0
16 TraesCS5D01G242100 chr3D 96.519 833 28 1 1 832 425507547 425508379 0.000000e+00 1376.0
17 TraesCS5D01G242100 chr3D 96.158 833 31 1 1 832 1192549 1193381 0.000000e+00 1360.0
18 TraesCS5D01G242100 chr3D 96.053 836 32 1 1 835 114848978 114848143 0.000000e+00 1360.0
19 TraesCS5D01G242100 chr2D 96.279 833 30 1 1 832 81354829 81355661 0.000000e+00 1365.0
20 TraesCS5D01G242100 chr2D 96.279 833 30 1 1 832 387265597 387264765 0.000000e+00 1365.0
21 TraesCS5D01G242100 chr7A 79.915 1409 258 16 1142 2542 150730345 150728954 0.000000e+00 1011.0
22 TraesCS5D01G242100 chr7A 82.687 387 61 5 2184 2564 150785889 150786275 4.590000e-89 339.0
23 TraesCS5D01G242100 chr7A 84.466 103 14 2 3527 3627 620396013 620395911 2.360000e-17 100.0
24 TraesCS5D01G242100 chr5B 79.888 1427 244 26 1142 2542 525525243 525523834 0.000000e+00 1005.0
25 TraesCS5D01G242100 chrUn 72.871 505 115 17 1202 1693 100205809 100206304 1.780000e-33 154.0
26 TraesCS5D01G242100 chrUn 83.505 97 13 3 3527 3621 55139896 55139991 1.830000e-13 87.9
27 TraesCS5D01G242100 chr1B 85.417 96 11 3 3527 3620 292346257 292346163 3.050000e-16 97.1
28 TraesCS5D01G242100 chr1B 82.524 103 16 2 3527 3627 9750619 9750721 5.100000e-14 89.8
29 TraesCS5D01G242100 chr2A 82.692 104 14 4 3527 3627 596350710 596350812 5.100000e-14 89.8
30 TraesCS5D01G242100 chr3B 83.158 95 15 1 3527 3621 769155941 769155848 6.600000e-13 86.1
31 TraesCS5D01G242100 chr2B 81.731 104 15 4 3527 3627 506208881 506208983 2.370000e-12 84.2
32 TraesCS5D01G242100 chr7D 79.365 126 17 8 3509 3627 616420592 616420715 3.070000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G242100 chr5D 350732119 350735825 3706 True 6846 6846 100.000 1 3707 1 chr5D.!!$R2 3706
1 TraesCS5D01G242100 chr5D 324789198 324790030 832 True 1365 1365 96.279 1 832 1 chr5D.!!$R1 831
2 TraesCS5D01G242100 chr5D 524990164 524990997 833 True 1351 1351 95.923 1 832 1 chr5D.!!$R3 831
3 TraesCS5D01G242100 chr5A 709518525 709519974 1449 True 1358 1358 83.811 1100 2542 1 chr5A.!!$R3 1442
4 TraesCS5D01G242100 chr5A 451251277 451255176 3899 True 888 2586 92.526 833 3478 4 chr5A.!!$R4 2645
5 TraesCS5D01G242100 chr1D 485942687 485944157 1470 False 1450 1450 84.683 1081 2542 1 chr1D.!!$F1 1461
6 TraesCS5D01G242100 chr4B 671853459 671854938 1479 True 1426 1426 84.404 1081 2542 1 chr4B.!!$R1 1461
7 TraesCS5D01G242100 chr6D 435477332 435478164 832 False 1382 1382 96.639 1 832 1 chr6D.!!$F2 831
8 TraesCS5D01G242100 chr6D 349777589 349778421 832 False 1376 1376 96.519 1 832 1 chr6D.!!$F1 831
9 TraesCS5D01G242100 chr3D 425507547 425508379 832 False 1376 1376 96.519 1 832 1 chr3D.!!$F2 831
10 TraesCS5D01G242100 chr3D 1192549 1193381 832 False 1360 1360 96.158 1 832 1 chr3D.!!$F1 831
11 TraesCS5D01G242100 chr3D 114848143 114848978 835 True 1360 1360 96.053 1 835 1 chr3D.!!$R1 834
12 TraesCS5D01G242100 chr2D 81354829 81355661 832 False 1365 1365 96.279 1 832 1 chr2D.!!$F1 831
13 TraesCS5D01G242100 chr2D 387264765 387265597 832 True 1365 1365 96.279 1 832 1 chr2D.!!$R1 831
14 TraesCS5D01G242100 chr7A 150728954 150730345 1391 True 1011 1011 79.915 1142 2542 1 chr7A.!!$R1 1400
15 TraesCS5D01G242100 chr5B 525523834 525525243 1409 True 1005 1005 79.888 1142 2542 1 chr5B.!!$R1 1400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 228 0.171455 GCGACGACTCTTGGTCATCT 59.829 55.0 0.00 0.0 44.70 2.90 F
678 681 0.179032 ACAAGTCATGCCACAACGGA 60.179 50.0 0.00 0.0 36.56 4.69 F
1771 1819 0.391263 GAAGACAACGGCGGAATCCT 60.391 55.0 13.24 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2265 0.039437 GCTCGGTCTTCTTCGTGTGA 60.039 55.0 0.00 0.0 0.00 3.58 R
2182 2272 0.107945 GATGCCAGCTCGGTCTTCTT 60.108 55.0 4.45 0.0 36.97 2.52 R
3596 5188 0.036671 GGACGAAACGGGGTTCAGAT 60.037 55.0 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 3.718210 GACGGGGTCGGTGCAGATC 62.718 68.421 0.00 0.00 41.39 2.75
226 228 0.171455 GCGACGACTCTTGGTCATCT 59.829 55.000 0.00 0.00 44.70 2.90
319 321 2.355837 TGAGCGCCAACTGTCGTC 60.356 61.111 2.29 0.00 0.00 4.20
360 362 0.388134 TCGTGCAAGGACTTAGTCGC 60.388 55.000 6.27 5.13 32.65 5.19
447 450 0.958876 GGCCCCTTACGTTGAAGGTG 60.959 60.000 14.55 5.89 44.02 4.00
508 511 1.192146 TGACCAGGAGCTAAACCGCT 61.192 55.000 0.00 0.00 44.33 5.52
533 536 3.847542 CCTGGCTATCGATCTGATCTTG 58.152 50.000 15.16 1.57 38.57 3.02
603 606 2.051518 CAGCGGCTCTCAGAGTCCT 61.052 63.158 0.00 0.00 29.32 3.85
678 681 0.179032 ACAAGTCATGCCACAACGGA 60.179 50.000 0.00 0.00 36.56 4.69
701 704 3.370846 GGTTTACCACTACGGGCCTTAAT 60.371 47.826 0.84 0.00 40.22 1.40
760 763 2.490902 CCTTAACCTGTCCTTGGGCTTT 60.491 50.000 0.00 0.00 0.00 3.51
817 820 1.219935 GGGCGGGTTACACCAGTAG 59.780 63.158 0.00 0.00 41.02 2.57
842 845 1.040646 TCCTCAACAGTTCTCGTGCT 58.959 50.000 0.00 0.00 0.00 4.40
843 846 1.412710 TCCTCAACAGTTCTCGTGCTT 59.587 47.619 0.00 0.00 0.00 3.91
863 866 3.120182 TCGAAACAACGTGGTTGAAAC 57.880 42.857 9.58 1.21 45.28 2.78
875 878 3.329929 GGTTGAAACCGTGTCCTATCT 57.670 47.619 0.00 0.00 39.66 1.98
958 962 1.199425 AGTCGGTTTCCTTCCCCTCC 61.199 60.000 0.00 0.00 0.00 4.30
964 968 1.198759 TTTCCTTCCCCTCCTCCACG 61.199 60.000 0.00 0.00 0.00 4.94
979 983 0.897863 CCACGCAAATCCCCCTTGAA 60.898 55.000 0.00 0.00 0.00 2.69
992 996 3.071892 CCCCCTTGAACGCACCTATTATA 59.928 47.826 0.00 0.00 0.00 0.98
993 997 4.263331 CCCCCTTGAACGCACCTATTATAT 60.263 45.833 0.00 0.00 0.00 0.86
994 998 5.046159 CCCCCTTGAACGCACCTATTATATA 60.046 44.000 0.00 0.00 0.00 0.86
995 999 5.873164 CCCCTTGAACGCACCTATTATATAC 59.127 44.000 0.00 0.00 0.00 1.47
1057 1092 7.863877 ACGCAACTTTTATATTCGAAGGTTTTT 59.136 29.630 3.35 0.00 0.00 1.94
1085 1120 3.430895 GTCAATCTTCGAAGGTAACGCAA 59.569 43.478 24.37 3.32 46.39 4.85
1109 1144 5.127194 ACTTTTATCTGTGGACTAGCATCGA 59.873 40.000 0.00 0.00 0.00 3.59
1160 1203 1.227999 CGACTTTGCGGCCTTCTTCA 61.228 55.000 0.00 0.00 0.00 3.02
1181 1224 2.238319 ATCAGTGGGCCGACCTCCTA 62.238 60.000 15.08 0.00 41.11 2.94
1184 1227 4.000620 TGGGCCGACCTCCTACCA 62.001 66.667 0.00 0.00 41.11 3.25
1412 1456 1.301244 CGTCTGTCACAGCTGGCTT 60.301 57.895 19.93 0.00 0.00 4.35
1556 1603 1.472552 CGGAAGGTAATCATGCCGTCA 60.473 52.381 0.00 0.00 40.62 4.35
1708 1756 4.563184 CGTGTTCTACAGAGGCAAACTATC 59.437 45.833 0.00 0.00 0.00 2.08
1739 1787 5.047802 CACTAAGGGCAATGATCTTGTTGTT 60.048 40.000 0.00 0.00 0.00 2.83
1762 1810 3.605634 TGGATATTGGTGAAGACAACGG 58.394 45.455 0.00 0.00 36.36 4.44
1771 1819 0.391263 GAAGACAACGGCGGAATCCT 60.391 55.000 13.24 0.00 0.00 3.24
1832 1880 2.707791 GGGTGATGATGATGAGGAGGAA 59.292 50.000 0.00 0.00 0.00 3.36
1833 1881 3.137176 GGGTGATGATGATGAGGAGGAAA 59.863 47.826 0.00 0.00 0.00 3.13
1856 1943 2.814280 ACGAAGACGATGGACAAGTT 57.186 45.000 0.00 0.00 42.66 2.66
1867 1954 3.096489 TGGACAAGTTTTGAGCAATGC 57.904 42.857 0.00 0.00 0.00 3.56
1891 1978 4.561105 GAAGAAGAAGAGGTGGTGTACAG 58.439 47.826 0.00 0.00 0.00 2.74
1970 2057 2.540973 CGACGACTCTGGCGATGATAAA 60.541 50.000 0.00 0.00 0.00 1.40
2175 2265 2.354259 GCACTGAGCAGCTCTATTGTT 58.646 47.619 23.15 0.00 44.79 2.83
2182 2272 2.029020 AGCAGCTCTATTGTTCACACGA 60.029 45.455 0.00 0.00 0.00 4.35
2191 2281 1.847818 TGTTCACACGAAGAAGACCG 58.152 50.000 0.00 0.00 0.00 4.79
2194 2284 0.039437 TCACACGAAGAAGACCGAGC 60.039 55.000 0.00 0.00 0.00 5.03
2208 2298 2.887568 GAGCTGGCATCGTGACCG 60.888 66.667 0.00 0.00 0.00 4.79
2414 2504 4.380843 ACATGTTCCCACATACCAAGAA 57.619 40.909 0.00 0.00 42.14 2.52
2462 2552 3.534554 TGTAGACGAGCATAACGTAGGA 58.465 45.455 0.00 0.00 43.97 2.94
2579 2670 4.080243 TCCTTTTTGTGTTGGTACAGAGGA 60.080 41.667 0.00 0.00 42.39 3.71
2605 2696 1.687660 TGAACCATTGTGCATGTGCTT 59.312 42.857 6.55 0.00 42.66 3.91
2609 2700 2.300723 ACCATTGTGCATGTGCTTCATT 59.699 40.909 6.55 0.72 42.66 2.57
2618 2709 3.983344 GCATGTGCTTCATTCGTTTCTTT 59.017 39.130 0.00 0.00 38.21 2.52
2690 2784 8.677300 CCAAGTGCATAAAGAAAGCTATCTAAA 58.323 33.333 0.00 0.00 0.00 1.85
2817 4408 0.593773 GTGTTTGTGACGCGGCAAAT 60.594 50.000 20.67 0.00 37.02 2.32
2838 4429 3.680490 TGGTTCCATGATAAACTTGCGA 58.320 40.909 0.00 0.00 0.00 5.10
2839 4430 3.438781 TGGTTCCATGATAAACTTGCGAC 59.561 43.478 0.00 0.00 0.00 5.19
2840 4431 3.438781 GGTTCCATGATAAACTTGCGACA 59.561 43.478 0.00 0.00 0.00 4.35
2841 4432 4.096382 GGTTCCATGATAAACTTGCGACAT 59.904 41.667 0.00 0.00 0.00 3.06
2842 4433 4.880886 TCCATGATAAACTTGCGACATG 57.119 40.909 0.00 0.00 36.10 3.21
2843 4434 4.512484 TCCATGATAAACTTGCGACATGA 58.488 39.130 0.00 0.00 37.77 3.07
2844 4435 4.571984 TCCATGATAAACTTGCGACATGAG 59.428 41.667 0.00 0.00 37.77 2.90
2845 4436 4.333649 CCATGATAAACTTGCGACATGAGT 59.666 41.667 0.00 0.00 37.77 3.41
2846 4437 5.523552 CCATGATAAACTTGCGACATGAGTA 59.476 40.000 0.00 0.00 37.77 2.59
2847 4438 6.203530 CCATGATAAACTTGCGACATGAGTAT 59.796 38.462 0.00 0.00 37.77 2.12
2848 4439 6.588348 TGATAAACTTGCGACATGAGTATG 57.412 37.500 0.00 0.00 40.24 2.39
2871 4462 7.861176 TGTTTTACTCATGTTAAAAATCGGC 57.139 32.000 13.23 5.44 0.00 5.54
2872 4463 7.653647 TGTTTTACTCATGTTAAAAATCGGCT 58.346 30.769 13.23 0.00 0.00 5.52
2873 4464 7.806014 TGTTTTACTCATGTTAAAAATCGGCTC 59.194 33.333 13.23 4.50 0.00 4.70
2874 4465 4.965119 ACTCATGTTAAAAATCGGCTCC 57.035 40.909 0.00 0.00 0.00 4.70
2875 4466 4.589908 ACTCATGTTAAAAATCGGCTCCT 58.410 39.130 0.00 0.00 0.00 3.69
2876 4467 4.396166 ACTCATGTTAAAAATCGGCTCCTG 59.604 41.667 0.00 0.00 0.00 3.86
2877 4468 3.128589 TCATGTTAAAAATCGGCTCCTGC 59.871 43.478 0.00 0.00 38.76 4.85
2878 4469 2.790433 TGTTAAAAATCGGCTCCTGCT 58.210 42.857 0.00 0.00 39.59 4.24
2879 4470 2.487762 TGTTAAAAATCGGCTCCTGCTG 59.512 45.455 0.00 0.00 46.48 4.41
2880 4471 1.094785 TAAAAATCGGCTCCTGCTGC 58.905 50.000 0.00 0.00 44.83 5.25
2881 4472 0.610232 AAAAATCGGCTCCTGCTGCT 60.610 50.000 0.00 0.00 44.83 4.24
2882 4473 1.028868 AAAATCGGCTCCTGCTGCTC 61.029 55.000 0.00 0.00 44.83 4.26
2883 4474 2.883267 AAATCGGCTCCTGCTGCTCC 62.883 60.000 0.00 0.00 44.83 4.70
2885 4476 4.834453 CGGCTCCTGCTGCTCCAG 62.834 72.222 0.00 0.00 38.88 3.86
2890 4481 4.421515 CCTGCTGCTCCAGGGTGG 62.422 72.222 13.47 0.00 46.93 4.61
2891 4482 3.644606 CTGCTGCTCCAGGGTGGT 61.645 66.667 0.00 0.00 39.03 4.16
2892 4483 2.203922 TGCTGCTCCAGGGTGGTA 60.204 61.111 0.00 0.00 39.03 3.25
2893 4484 2.269241 GCTGCTCCAGGGTGGTAC 59.731 66.667 0.00 0.00 39.03 3.34
2894 4485 2.990479 CTGCTCCAGGGTGGTACC 59.010 66.667 4.43 4.43 39.03 3.34
2904 4495 2.031360 GGTGGTACCCTCTCGATCG 58.969 63.158 9.36 9.36 30.04 3.69
2905 4496 1.453762 GGTGGTACCCTCTCGATCGG 61.454 65.000 16.41 6.26 30.04 4.18
2906 4497 1.826921 TGGTACCCTCTCGATCGGC 60.827 63.158 16.41 0.00 0.00 5.54
2907 4498 2.562876 GGTACCCTCTCGATCGGCC 61.563 68.421 16.41 0.00 0.00 6.13
2908 4499 1.826921 GTACCCTCTCGATCGGCCA 60.827 63.158 16.41 0.00 0.00 5.36
2909 4500 1.153061 TACCCTCTCGATCGGCCAT 59.847 57.895 16.41 0.00 0.00 4.40
2910 4501 0.402887 TACCCTCTCGATCGGCCATA 59.597 55.000 16.41 0.00 0.00 2.74
2911 4502 0.896019 ACCCTCTCGATCGGCCATAG 60.896 60.000 16.41 4.75 0.00 2.23
2912 4503 0.896019 CCCTCTCGATCGGCCATAGT 60.896 60.000 16.41 0.00 0.00 2.12
2913 4504 0.962489 CCTCTCGATCGGCCATAGTT 59.038 55.000 16.41 0.00 0.00 2.24
2914 4505 2.160205 CCTCTCGATCGGCCATAGTTA 58.840 52.381 16.41 0.00 0.00 2.24
2915 4506 2.755655 CCTCTCGATCGGCCATAGTTAT 59.244 50.000 16.41 0.00 0.00 1.89
2916 4507 3.428180 CCTCTCGATCGGCCATAGTTATG 60.428 52.174 16.41 0.00 0.00 1.90
2917 4508 2.094700 TCTCGATCGGCCATAGTTATGC 60.095 50.000 16.41 0.00 32.40 3.14
2918 4509 1.893137 TCGATCGGCCATAGTTATGCT 59.107 47.619 16.41 0.00 32.40 3.79
2919 4510 2.094700 TCGATCGGCCATAGTTATGCTC 60.095 50.000 16.41 0.00 32.40 4.26
2920 4511 2.622436 GATCGGCCATAGTTATGCTCC 58.378 52.381 2.24 0.00 32.40 4.70
2921 4512 1.419381 TCGGCCATAGTTATGCTCCA 58.581 50.000 2.24 0.00 32.40 3.86
2922 4513 1.977854 TCGGCCATAGTTATGCTCCAT 59.022 47.619 2.24 0.00 32.40 3.41
2923 4514 2.079158 CGGCCATAGTTATGCTCCATG 58.921 52.381 2.24 0.00 32.40 3.66
2924 4515 2.440409 GGCCATAGTTATGCTCCATGG 58.560 52.381 4.97 4.97 36.73 3.66
2925 4516 1.815003 GCCATAGTTATGCTCCATGGC 59.185 52.381 6.96 8.03 46.21 4.40
2926 4517 2.440409 CCATAGTTATGCTCCATGGCC 58.560 52.381 6.96 0.00 29.44 5.36
2927 4518 2.079158 CATAGTTATGCTCCATGGCCG 58.921 52.381 6.96 1.19 0.00 6.13
2928 4519 0.250295 TAGTTATGCTCCATGGCCGC 60.250 55.000 6.96 12.80 0.00 6.53
2929 4520 1.526917 GTTATGCTCCATGGCCGCT 60.527 57.895 21.46 12.43 0.00 5.52
2930 4521 1.526686 TTATGCTCCATGGCCGCTG 60.527 57.895 21.46 0.00 0.00 5.18
2931 4522 1.981951 TTATGCTCCATGGCCGCTGA 61.982 55.000 21.46 10.33 0.00 4.26
2932 4523 2.665008 TATGCTCCATGGCCGCTGAC 62.665 60.000 21.46 2.50 0.00 3.51
2934 4525 4.147449 CTCCATGGCCGCTGACGA 62.147 66.667 6.96 0.00 43.93 4.20
2935 4526 4.147449 TCCATGGCCGCTGACGAG 62.147 66.667 6.96 0.00 43.93 4.18
2937 4528 4.827087 CATGGCCGCTGACGAGCT 62.827 66.667 0.00 0.00 43.77 4.09
2938 4529 4.827087 ATGGCCGCTGACGAGCTG 62.827 66.667 0.00 0.00 43.77 4.24
2942 4533 4.426112 CCGCTGACGAGCTGAGCA 62.426 66.667 7.39 0.00 43.77 4.26
2943 4534 2.202716 CGCTGACGAGCTGAGCAT 60.203 61.111 7.39 0.00 43.77 3.79
2944 4535 2.229589 CGCTGACGAGCTGAGCATC 61.230 63.158 7.39 1.49 43.77 3.91
2945 4536 1.141449 GCTGACGAGCTGAGCATCT 59.859 57.895 7.39 0.00 42.52 2.90
2946 4537 0.871163 GCTGACGAGCTGAGCATCTC 60.871 60.000 7.39 0.00 42.52 2.75
2957 4548 3.168271 GCATCTCGCTGCAAACGA 58.832 55.556 10.68 10.68 41.87 3.85
2958 4549 1.717937 GCATCTCGCTGCAAACGAT 59.282 52.632 11.46 0.00 41.87 3.73
2959 4550 0.588233 GCATCTCGCTGCAAACGATG 60.588 55.000 11.46 9.32 41.87 3.84
2960 4551 1.001624 CATCTCGCTGCAAACGATGA 58.998 50.000 11.46 11.10 39.12 2.92
2961 4552 1.394572 CATCTCGCTGCAAACGATGAA 59.605 47.619 11.46 2.47 39.12 2.57
2962 4553 1.070821 TCTCGCTGCAAACGATGAAG 58.929 50.000 11.46 1.54 39.12 3.02
2967 4558 2.975410 CTGCAAACGATGAAGCTTCA 57.025 45.000 30.23 30.23 42.14 3.02
2968 4559 2.847901 CTGCAAACGATGAAGCTTCAG 58.152 47.619 31.14 21.75 41.08 3.02
2969 4560 1.069022 TGCAAACGATGAAGCTTCAGC 60.069 47.619 30.22 30.22 41.08 4.26
2970 4561 1.069022 GCAAACGATGAAGCTTCAGCA 60.069 47.619 35.93 16.09 43.38 4.41
2971 4562 2.847901 CAAACGATGAAGCTTCAGCAG 58.152 47.619 35.93 29.79 43.38 4.24
2979 4570 4.275524 GCTTCAGCAGCTCGAACT 57.724 55.556 0.00 0.00 46.27 3.01
2980 4571 1.786582 GCTTCAGCAGCTCGAACTG 59.213 57.895 11.52 11.52 46.27 3.16
2981 4572 0.668706 GCTTCAGCAGCTCGAACTGA 60.669 55.000 19.73 10.95 46.27 3.41
2982 4573 1.788258 CTTCAGCAGCTCGAACTGAA 58.212 50.000 19.73 16.93 45.56 3.02
2983 4574 1.788258 TTCAGCAGCTCGAACTGAAG 58.212 50.000 19.73 10.31 43.55 3.02
2984 4575 0.668706 TCAGCAGCTCGAACTGAAGC 60.669 55.000 19.73 4.29 40.25 3.86
2985 4576 1.375268 AGCAGCTCGAACTGAAGCC 60.375 57.895 19.73 1.70 40.25 4.35
2986 4577 2.394563 GCAGCTCGAACTGAAGCCC 61.395 63.158 19.73 0.00 40.25 5.19
2987 4578 1.743252 CAGCTCGAACTGAAGCCCC 60.743 63.158 10.35 0.00 40.25 5.80
2988 4579 2.815647 GCTCGAACTGAAGCCCCG 60.816 66.667 0.00 0.00 0.00 5.73
2989 4580 2.125512 CTCGAACTGAAGCCCCGG 60.126 66.667 0.00 0.00 0.00 5.73
2990 4581 4.388499 TCGAACTGAAGCCCCGGC 62.388 66.667 0.00 0.00 42.33 6.13
2991 4582 4.697756 CGAACTGAAGCCCCGGCA 62.698 66.667 8.74 0.00 44.88 5.69
2992 4583 2.044946 GAACTGAAGCCCCGGCAT 60.045 61.111 8.74 0.00 44.88 4.40
2993 4584 2.361610 AACTGAAGCCCCGGCATG 60.362 61.111 8.74 0.00 44.88 4.06
2994 4585 3.210012 AACTGAAGCCCCGGCATGT 62.210 57.895 8.74 0.00 44.88 3.21
2995 4586 1.847798 AACTGAAGCCCCGGCATGTA 61.848 55.000 8.74 0.00 44.88 2.29
2996 4587 1.524621 CTGAAGCCCCGGCATGTAG 60.525 63.158 8.74 0.00 44.88 2.74
2997 4588 2.902343 GAAGCCCCGGCATGTAGC 60.902 66.667 8.74 0.00 44.88 3.58
3006 4597 2.203070 GCATGTAGCAGACCCCGG 60.203 66.667 0.00 0.00 44.79 5.73
3007 4598 2.203070 CATGTAGCAGACCCCGGC 60.203 66.667 0.00 0.00 0.00 6.13
3008 4599 3.849951 ATGTAGCAGACCCCGGCG 61.850 66.667 0.00 0.00 38.54 6.46
3010 4601 4.509737 GTAGCAGACCCCGGCGTC 62.510 72.222 11.46 11.46 38.54 5.19
3015 4606 4.779733 AGACCCCGGCGTCCTCAT 62.780 66.667 15.65 0.00 32.91 2.90
3016 4607 4.222847 GACCCCGGCGTCCTCATC 62.223 72.222 8.12 0.00 0.00 2.92
3018 4609 3.550431 CCCCGGCGTCCTCATCAT 61.550 66.667 6.01 0.00 0.00 2.45
3019 4610 2.029666 CCCGGCGTCCTCATCATC 59.970 66.667 6.01 0.00 0.00 2.92
3020 4611 2.502492 CCCGGCGTCCTCATCATCT 61.502 63.158 6.01 0.00 0.00 2.90
3021 4612 1.179174 CCCGGCGTCCTCATCATCTA 61.179 60.000 6.01 0.00 0.00 1.98
3022 4613 0.891373 CCGGCGTCCTCATCATCTAT 59.109 55.000 6.01 0.00 0.00 1.98
3023 4614 1.273606 CCGGCGTCCTCATCATCTATT 59.726 52.381 6.01 0.00 0.00 1.73
3024 4615 2.492088 CCGGCGTCCTCATCATCTATTA 59.508 50.000 6.01 0.00 0.00 0.98
3025 4616 3.056821 CCGGCGTCCTCATCATCTATTAA 60.057 47.826 6.01 0.00 0.00 1.40
3026 4617 4.382040 CCGGCGTCCTCATCATCTATTAAT 60.382 45.833 6.01 0.00 0.00 1.40
3027 4618 5.171476 CGGCGTCCTCATCATCTATTAATT 58.829 41.667 0.00 0.00 0.00 1.40
3028 4619 5.062683 CGGCGTCCTCATCATCTATTAATTG 59.937 44.000 0.00 0.00 0.00 2.32
3029 4620 5.934625 GGCGTCCTCATCATCTATTAATTGT 59.065 40.000 0.00 0.00 0.00 2.71
3030 4621 6.128445 GGCGTCCTCATCATCTATTAATTGTG 60.128 42.308 0.00 0.00 0.00 3.33
3031 4622 6.619446 GCGTCCTCATCATCTATTAATTGTGC 60.619 42.308 0.00 0.00 0.00 4.57
3032 4623 6.424812 CGTCCTCATCATCTATTAATTGTGCA 59.575 38.462 0.00 0.00 0.00 4.57
3033 4624 7.570140 CGTCCTCATCATCTATTAATTGTGCAC 60.570 40.741 10.75 10.75 0.00 4.57
3034 4625 7.227314 GTCCTCATCATCTATTAATTGTGCACA 59.773 37.037 17.42 17.42 0.00 4.57
3035 4626 7.227314 TCCTCATCATCTATTAATTGTGCACAC 59.773 37.037 21.56 0.00 0.00 3.82
3036 4627 6.947258 TCATCATCTATTAATTGTGCACACG 58.053 36.000 21.56 2.35 0.00 4.49
3037 4628 6.538381 TCATCATCTATTAATTGTGCACACGT 59.462 34.615 21.56 12.95 0.00 4.49
3038 4629 7.708752 TCATCATCTATTAATTGTGCACACGTA 59.291 33.333 21.56 11.83 0.00 3.57
3039 4630 7.229228 TCATCTATTAATTGTGCACACGTAC 57.771 36.000 21.56 0.00 0.00 3.67
3040 4631 6.814146 TCATCTATTAATTGTGCACACGTACA 59.186 34.615 21.56 4.51 35.79 2.90
3041 4632 6.397831 TCTATTAATTGTGCACACGTACAC 57.602 37.500 21.56 8.22 37.48 2.90
3042 4633 5.927115 TCTATTAATTGTGCACACGTACACA 59.073 36.000 21.56 12.61 44.68 3.72
3043 4634 2.748461 AATTGTGCACACGTACACAC 57.252 45.000 21.56 11.23 45.94 3.82
3053 4644 4.565531 GTACACACGACCCTTCCG 57.434 61.111 0.00 0.00 0.00 4.30
3054 4645 1.662044 GTACACACGACCCTTCCGT 59.338 57.895 0.00 0.00 41.36 4.69
3055 4646 0.387750 GTACACACGACCCTTCCGTC 60.388 60.000 0.00 0.00 38.29 4.79
3056 4647 1.526575 TACACACGACCCTTCCGTCC 61.527 60.000 0.00 0.00 38.29 4.79
3057 4648 3.677648 ACACGACCCTTCCGTCCG 61.678 66.667 0.00 0.00 38.29 4.79
3060 4651 4.796231 CGACCCTTCCGTCCGCAG 62.796 72.222 0.00 0.00 0.00 5.18
3061 4652 3.692406 GACCCTTCCGTCCGCAGT 61.692 66.667 0.00 0.00 0.00 4.40
3062 4653 3.644399 GACCCTTCCGTCCGCAGTC 62.644 68.421 0.00 0.00 0.00 3.51
3063 4654 3.382832 CCCTTCCGTCCGCAGTCT 61.383 66.667 0.00 0.00 0.00 3.24
3064 4655 2.050350 CCCTTCCGTCCGCAGTCTA 61.050 63.158 0.00 0.00 0.00 2.59
3065 4656 1.139095 CCTTCCGTCCGCAGTCTAC 59.861 63.158 0.00 0.00 0.00 2.59
3066 4657 1.592400 CCTTCCGTCCGCAGTCTACA 61.592 60.000 0.00 0.00 0.00 2.74
3067 4658 0.456312 CTTCCGTCCGCAGTCTACAC 60.456 60.000 0.00 0.00 0.00 2.90
3068 4659 1.174078 TTCCGTCCGCAGTCTACACA 61.174 55.000 0.00 0.00 0.00 3.72
3069 4660 1.443872 CCGTCCGCAGTCTACACAC 60.444 63.158 0.00 0.00 0.00 3.82
3070 4661 1.796355 CGTCCGCAGTCTACACACG 60.796 63.158 0.00 0.00 0.00 4.49
3071 4662 1.577922 GTCCGCAGTCTACACACGA 59.422 57.895 0.00 0.00 0.00 4.35
3072 4663 0.728466 GTCCGCAGTCTACACACGAC 60.728 60.000 0.00 0.00 0.00 4.34
3073 4664 1.796355 CCGCAGTCTACACACGACG 60.796 63.158 0.00 0.00 36.53 5.12
3074 4665 2.426183 CGCAGTCTACACACGACGC 61.426 63.158 0.00 0.00 36.53 5.19
3075 4666 2.087009 GCAGTCTACACACGACGCC 61.087 63.158 0.00 0.00 36.53 5.68
3076 4667 1.796355 CAGTCTACACACGACGCCG 60.796 63.158 0.00 0.00 42.50 6.46
3077 4668 3.170585 GTCTACACACGACGCCGC 61.171 66.667 0.00 0.00 39.95 6.53
3078 4669 3.359523 TCTACACACGACGCCGCT 61.360 61.111 0.00 0.00 39.95 5.52
3079 4670 2.874780 CTACACACGACGCCGCTC 60.875 66.667 0.00 0.00 39.95 5.03
3080 4671 3.324099 CTACACACGACGCCGCTCT 62.324 63.158 0.00 0.00 39.95 4.09
3081 4672 3.318539 TACACACGACGCCGCTCTC 62.319 63.158 0.00 0.00 39.95 3.20
3082 4673 4.406173 CACACGACGCCGCTCTCT 62.406 66.667 0.00 0.00 39.95 3.10
3083 4674 4.406173 ACACGACGCCGCTCTCTG 62.406 66.667 0.00 0.00 39.95 3.35
3084 4675 4.406173 CACGACGCCGCTCTCTGT 62.406 66.667 0.00 0.00 39.95 3.41
3085 4676 4.406173 ACGACGCCGCTCTCTGTG 62.406 66.667 0.00 0.00 39.95 3.66
3087 4678 4.724602 GACGCCGCTCTCTGTGCA 62.725 66.667 0.00 0.00 0.00 4.57
3088 4679 3.997064 GACGCCGCTCTCTGTGCAT 62.997 63.158 0.00 0.00 0.00 3.96
3089 4680 3.561213 CGCCGCTCTCTGTGCATG 61.561 66.667 0.00 0.00 0.00 4.06
3090 4681 3.873883 GCCGCTCTCTGTGCATGC 61.874 66.667 11.82 11.82 0.00 4.06
3091 4682 2.435410 CCGCTCTCTGTGCATGCA 60.435 61.111 18.46 18.46 0.00 3.96
3092 4683 2.461945 CCGCTCTCTGTGCATGCAG 61.462 63.158 23.41 10.99 37.81 4.41
3093 4684 1.740664 CGCTCTCTGTGCATGCAGT 60.741 57.895 23.41 0.00 37.70 4.40
3094 4685 1.694018 CGCTCTCTGTGCATGCAGTC 61.694 60.000 23.41 11.34 37.70 3.51
3095 4686 0.391395 GCTCTCTGTGCATGCAGTCT 60.391 55.000 23.41 0.00 37.70 3.24
3096 4687 1.360820 CTCTCTGTGCATGCAGTCTG 58.639 55.000 23.41 14.35 37.70 3.51
3097 4688 0.672711 TCTCTGTGCATGCAGTCTGC 60.673 55.000 23.41 18.32 45.29 4.26
3136 4727 1.403679 CGGCAAGTTTTCACCAGTGAA 59.596 47.619 9.12 9.12 46.72 3.18
3194 4785 4.135153 CCCTCCTCCGCGTCACTG 62.135 72.222 4.92 0.00 0.00 3.66
3323 4914 4.351938 TGCGACCACGGGAAGACG 62.352 66.667 0.00 0.00 40.15 4.18
3334 4925 3.345808 GAAGACGCGGTGCTGCAA 61.346 61.111 12.47 0.00 34.15 4.08
3337 4928 4.465512 GACGCGGTGCTGCAATGG 62.466 66.667 12.47 0.00 34.15 3.16
3396 4987 3.797353 CACGGGCTGTGGGGCTAT 61.797 66.667 18.87 0.00 45.21 2.97
3402 4993 1.449353 GCTGTGGGGCTATGAGGAG 59.551 63.158 0.00 0.00 0.00 3.69
3409 5000 4.593206 TGTGGGGCTATGAGGAGTAAATAG 59.407 45.833 0.00 0.00 0.00 1.73
3441 5032 8.255111 ACTACCACATTATAGGTTAGGGTAAC 57.745 38.462 0.00 0.00 39.31 2.50
3487 5079 9.976511 AATGTCCTAAAAAGCTACTTAAAAACC 57.023 29.630 0.00 0.00 0.00 3.27
3488 5080 7.944061 TGTCCTAAAAAGCTACTTAAAAACCC 58.056 34.615 0.00 0.00 0.00 4.11
3489 5081 7.560626 TGTCCTAAAAAGCTACTTAAAAACCCA 59.439 33.333 0.00 0.00 0.00 4.51
3490 5082 8.415553 GTCCTAAAAAGCTACTTAAAAACCCAA 58.584 33.333 0.00 0.00 0.00 4.12
3491 5083 8.979534 TCCTAAAAAGCTACTTAAAAACCCAAA 58.020 29.630 0.00 0.00 0.00 3.28
3492 5084 9.772973 CCTAAAAAGCTACTTAAAAACCCAAAT 57.227 29.630 0.00 0.00 0.00 2.32
3495 5087 7.490962 AAAGCTACTTAAAAACCCAAATTGC 57.509 32.000 0.00 0.00 0.00 3.56
3496 5088 5.547465 AGCTACTTAAAAACCCAAATTGCC 58.453 37.500 0.00 0.00 0.00 4.52
3497 5089 5.071115 AGCTACTTAAAAACCCAAATTGCCA 59.929 36.000 0.00 0.00 0.00 4.92
3498 5090 5.937540 GCTACTTAAAAACCCAAATTGCCAT 59.062 36.000 0.00 0.00 0.00 4.40
3499 5091 6.128309 GCTACTTAAAAACCCAAATTGCCATG 60.128 38.462 0.00 0.00 0.00 3.66
3500 5092 5.689835 ACTTAAAAACCCAAATTGCCATGT 58.310 33.333 0.00 0.00 0.00 3.21
3501 5093 5.530543 ACTTAAAAACCCAAATTGCCATGTG 59.469 36.000 0.00 0.00 0.00 3.21
3502 5094 3.853355 AAAACCCAAATTGCCATGTGA 57.147 38.095 0.00 0.00 0.00 3.58
3503 5095 4.370094 AAAACCCAAATTGCCATGTGAT 57.630 36.364 0.00 0.00 0.00 3.06
3504 5096 4.370094 AAACCCAAATTGCCATGTGATT 57.630 36.364 0.00 0.00 0.00 2.57
3505 5097 5.495926 AAACCCAAATTGCCATGTGATTA 57.504 34.783 0.00 0.00 0.00 1.75
3506 5098 5.495926 AACCCAAATTGCCATGTGATTAA 57.504 34.783 0.00 0.00 0.00 1.40
3507 5099 5.495926 ACCCAAATTGCCATGTGATTAAA 57.504 34.783 0.00 0.00 0.00 1.52
3508 5100 5.874093 ACCCAAATTGCCATGTGATTAAAA 58.126 33.333 0.00 0.00 0.00 1.52
3509 5101 6.483405 ACCCAAATTGCCATGTGATTAAAAT 58.517 32.000 0.00 0.00 0.00 1.82
3510 5102 6.947158 ACCCAAATTGCCATGTGATTAAAATT 59.053 30.769 0.00 0.00 0.00 1.82
3511 5103 7.450944 ACCCAAATTGCCATGTGATTAAAATTT 59.549 29.630 0.00 0.00 0.00 1.82
3512 5104 7.755822 CCCAAATTGCCATGTGATTAAAATTTG 59.244 33.333 9.77 9.77 40.58 2.32
3513 5105 8.676454 CAAATTGCCATGTGATTAAAATTTGG 57.324 30.769 9.13 0.00 38.74 3.28
3514 5106 7.393841 AATTGCCATGTGATTAAAATTTGGG 57.606 32.000 0.00 0.00 0.00 4.12
3515 5107 4.841422 TGCCATGTGATTAAAATTTGGGG 58.159 39.130 0.00 0.00 0.00 4.96
3516 5108 4.533707 TGCCATGTGATTAAAATTTGGGGA 59.466 37.500 0.00 0.00 0.00 4.81
3517 5109 4.875536 GCCATGTGATTAAAATTTGGGGAC 59.124 41.667 0.00 0.00 0.00 4.46
3518 5110 5.338300 GCCATGTGATTAAAATTTGGGGACT 60.338 40.000 0.00 0.00 0.00 3.85
3519 5111 6.108015 CCATGTGATTAAAATTTGGGGACTG 58.892 40.000 0.00 0.00 0.00 3.51
3520 5112 6.070881 CCATGTGATTAAAATTTGGGGACTGA 60.071 38.462 0.00 0.00 0.00 3.41
3521 5113 7.364939 CCATGTGATTAAAATTTGGGGACTGAT 60.365 37.037 0.00 0.00 0.00 2.90
3522 5114 6.934056 TGTGATTAAAATTTGGGGACTGATG 58.066 36.000 0.00 0.00 0.00 3.07
3523 5115 6.723515 TGTGATTAAAATTTGGGGACTGATGA 59.276 34.615 0.00 0.00 0.00 2.92
3524 5116 7.093814 TGTGATTAAAATTTGGGGACTGATGAG 60.094 37.037 0.00 0.00 0.00 2.90
3525 5117 6.953520 TGATTAAAATTTGGGGACTGATGAGT 59.046 34.615 0.00 0.00 33.98 3.41
3526 5118 6.588719 TTAAAATTTGGGGACTGATGAGTG 57.411 37.500 0.00 0.00 30.16 3.51
3527 5119 2.134789 ATTTGGGGACTGATGAGTGC 57.865 50.000 0.00 0.00 39.77 4.40
3531 5123 2.512515 GGACTGATGAGTGCCGGC 60.513 66.667 22.73 22.73 34.53 6.13
3532 5124 2.887568 GACTGATGAGTGCCGGCG 60.888 66.667 23.90 7.09 30.16 6.46
3549 5141 3.977244 GCACCGGCCCAACAGTTG 61.977 66.667 0.00 6.28 0.00 3.16
3558 5150 3.353836 CAACAGTTGGGCCGGTCG 61.354 66.667 1.90 0.00 0.00 4.79
3559 5151 3.552384 AACAGTTGGGCCGGTCGA 61.552 61.111 1.90 0.00 0.00 4.20
3560 5152 3.530910 AACAGTTGGGCCGGTCGAG 62.531 63.158 1.90 0.00 0.00 4.04
3574 5166 4.090588 CGAGCCCCAACCGCCTAA 62.091 66.667 0.00 0.00 0.00 2.69
3575 5167 2.595655 GAGCCCCAACCGCCTAAT 59.404 61.111 0.00 0.00 0.00 1.73
3576 5168 1.834301 GAGCCCCAACCGCCTAATA 59.166 57.895 0.00 0.00 0.00 0.98
3577 5169 0.400594 GAGCCCCAACCGCCTAATAT 59.599 55.000 0.00 0.00 0.00 1.28
3578 5170 1.626825 GAGCCCCAACCGCCTAATATA 59.373 52.381 0.00 0.00 0.00 0.86
3579 5171 1.628846 AGCCCCAACCGCCTAATATAG 59.371 52.381 0.00 0.00 0.00 1.31
3580 5172 1.949079 GCCCCAACCGCCTAATATAGC 60.949 57.143 0.00 0.00 0.00 2.97
3591 5183 5.024785 GCCTAATATAGCGATTAAGGCCT 57.975 43.478 0.00 0.00 33.73 5.19
3592 5184 5.429130 GCCTAATATAGCGATTAAGGCCTT 58.571 41.667 24.18 24.18 33.73 4.35
3593 5185 5.524281 GCCTAATATAGCGATTAAGGCCTTC 59.476 44.000 24.49 7.14 33.73 3.46
3594 5186 6.640518 CCTAATATAGCGATTAAGGCCTTCA 58.359 40.000 24.49 12.58 0.00 3.02
3595 5187 6.758886 CCTAATATAGCGATTAAGGCCTTCAG 59.241 42.308 24.49 12.85 0.00 3.02
3596 5188 6.360370 AATATAGCGATTAAGGCCTTCAGA 57.640 37.500 24.49 10.07 0.00 3.27
3597 5189 4.899352 ATAGCGATTAAGGCCTTCAGAT 57.101 40.909 24.49 14.77 0.00 2.90
3598 5190 3.118905 AGCGATTAAGGCCTTCAGATC 57.881 47.619 24.49 21.04 0.00 2.75
3599 5191 2.703007 AGCGATTAAGGCCTTCAGATCT 59.297 45.455 24.49 12.22 0.00 2.75
3600 5192 2.805099 GCGATTAAGGCCTTCAGATCTG 59.195 50.000 24.49 17.07 0.00 2.90
3601 5193 3.493350 GCGATTAAGGCCTTCAGATCTGA 60.493 47.826 24.49 21.67 37.91 3.27
3602 5194 4.697514 CGATTAAGGCCTTCAGATCTGAA 58.302 43.478 31.10 31.10 46.27 3.02
3603 5195 4.509600 CGATTAAGGCCTTCAGATCTGAAC 59.490 45.833 30.05 21.84 43.90 3.18
3604 5196 2.797177 AAGGCCTTCAGATCTGAACC 57.203 50.000 30.05 28.14 43.90 3.62
3605 5197 0.915364 AGGCCTTCAGATCTGAACCC 59.085 55.000 30.05 28.73 43.90 4.11
3606 5198 0.106967 GGCCTTCAGATCTGAACCCC 60.107 60.000 30.05 26.35 43.90 4.95
3607 5199 0.462759 GCCTTCAGATCTGAACCCCG 60.463 60.000 30.05 20.89 43.90 5.73
3608 5200 0.905357 CCTTCAGATCTGAACCCCGT 59.095 55.000 30.05 0.00 43.90 5.28
3609 5201 1.279271 CCTTCAGATCTGAACCCCGTT 59.721 52.381 30.05 0.00 43.90 4.44
3610 5202 2.290323 CCTTCAGATCTGAACCCCGTTT 60.290 50.000 30.05 0.00 43.90 3.60
3611 5203 2.762535 TCAGATCTGAACCCCGTTTC 57.237 50.000 23.17 0.00 36.53 2.78
3612 5204 1.067142 TCAGATCTGAACCCCGTTTCG 60.067 52.381 23.17 0.00 36.53 3.46
3613 5205 0.974383 AGATCTGAACCCCGTTTCGT 59.026 50.000 0.00 0.00 0.00 3.85
3614 5206 1.067071 AGATCTGAACCCCGTTTCGTC 60.067 52.381 0.00 0.00 0.00 4.20
3615 5207 0.036671 ATCTGAACCCCGTTTCGTCC 60.037 55.000 0.00 0.00 0.00 4.79
3616 5208 1.117142 TCTGAACCCCGTTTCGTCCT 61.117 55.000 0.00 0.00 0.00 3.85
3617 5209 0.669625 CTGAACCCCGTTTCGTCCTC 60.670 60.000 0.00 0.00 0.00 3.71
3618 5210 1.375140 GAACCCCGTTTCGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
3619 5211 1.824224 GAACCCCGTTTCGTCCTCCT 61.824 60.000 0.00 0.00 0.00 3.69
3620 5212 1.824224 AACCCCGTTTCGTCCTCCTC 61.824 60.000 0.00 0.00 0.00 3.71
3621 5213 2.181021 CCCGTTTCGTCCTCCTCG 59.819 66.667 0.00 0.00 0.00 4.63
3622 5214 2.506438 CCGTTTCGTCCTCCTCGC 60.506 66.667 0.00 0.00 0.00 5.03
3623 5215 2.257371 CGTTTCGTCCTCCTCGCA 59.743 61.111 0.00 0.00 0.00 5.10
3624 5216 1.801913 CGTTTCGTCCTCCTCGCAG 60.802 63.158 0.00 0.00 0.00 5.18
3625 5217 1.289380 GTTTCGTCCTCCTCGCAGT 59.711 57.895 0.00 0.00 0.00 4.40
3626 5218 0.733223 GTTTCGTCCTCCTCGCAGTC 60.733 60.000 0.00 0.00 0.00 3.51
3627 5219 2.196382 TTTCGTCCTCCTCGCAGTCG 62.196 60.000 0.00 0.00 0.00 4.18
3628 5220 3.432588 CGTCCTCCTCGCAGTCGT 61.433 66.667 0.00 0.00 36.96 4.34
3629 5221 2.963371 GTCCTCCTCGCAGTCGTT 59.037 61.111 0.00 0.00 36.96 3.85
3630 5222 1.153997 GTCCTCCTCGCAGTCGTTC 60.154 63.158 0.00 0.00 36.96 3.95
3631 5223 2.182030 CCTCCTCGCAGTCGTTCC 59.818 66.667 0.00 0.00 36.96 3.62
3632 5224 2.182030 CTCCTCGCAGTCGTTCCC 59.818 66.667 0.00 0.00 36.96 3.97
3633 5225 3.358076 CTCCTCGCAGTCGTTCCCC 62.358 68.421 0.00 0.00 36.96 4.81
3634 5226 3.691342 CCTCGCAGTCGTTCCCCA 61.691 66.667 0.00 0.00 36.96 4.96
3635 5227 2.432628 CTCGCAGTCGTTCCCCAC 60.433 66.667 0.00 0.00 36.96 4.61
3636 5228 3.220999 CTCGCAGTCGTTCCCCACA 62.221 63.158 0.00 0.00 36.96 4.17
3637 5229 3.041940 CGCAGTCGTTCCCCACAC 61.042 66.667 0.00 0.00 0.00 3.82
3638 5230 2.668550 GCAGTCGTTCCCCACACC 60.669 66.667 0.00 0.00 0.00 4.16
3639 5231 2.032071 CAGTCGTTCCCCACACCC 59.968 66.667 0.00 0.00 0.00 4.61
3640 5232 2.446994 AGTCGTTCCCCACACCCA 60.447 61.111 0.00 0.00 0.00 4.51
3641 5233 2.281276 GTCGTTCCCCACACCCAC 60.281 66.667 0.00 0.00 0.00 4.61
3642 5234 3.562232 TCGTTCCCCACACCCACC 61.562 66.667 0.00 0.00 0.00 4.61
3643 5235 4.653888 CGTTCCCCACACCCACCC 62.654 72.222 0.00 0.00 0.00 4.61
3644 5236 3.182996 GTTCCCCACACCCACCCT 61.183 66.667 0.00 0.00 0.00 4.34
3645 5237 2.856988 TTCCCCACACCCACCCTC 60.857 66.667 0.00 0.00 0.00 4.30
3646 5238 4.995058 TCCCCACACCCACCCTCC 62.995 72.222 0.00 0.00 0.00 4.30
3650 5242 3.330720 CACACCCACCCTCCCCTC 61.331 72.222 0.00 0.00 0.00 4.30
3651 5243 4.677151 ACACCCACCCTCCCCTCC 62.677 72.222 0.00 0.00 0.00 4.30
3660 5252 4.862823 CTCCCCTCCCGTCCCCTC 62.863 77.778 0.00 0.00 0.00 4.30
3676 5268 1.473258 CCTCCGGGATGAAAATTGCA 58.527 50.000 0.00 0.00 33.58 4.08
3677 5269 1.824230 CCTCCGGGATGAAAATTGCAA 59.176 47.619 0.00 0.00 33.58 4.08
3678 5270 2.417243 CCTCCGGGATGAAAATTGCAAC 60.417 50.000 0.00 0.00 33.58 4.17
3679 5271 1.201181 TCCGGGATGAAAATTGCAACG 59.799 47.619 0.00 0.00 0.00 4.10
3680 5272 1.627879 CGGGATGAAAATTGCAACGG 58.372 50.000 0.00 0.00 0.00 4.44
3681 5273 1.358877 GGGATGAAAATTGCAACGGC 58.641 50.000 0.00 0.00 41.68 5.68
3682 5274 1.358877 GGATGAAAATTGCAACGGCC 58.641 50.000 0.00 0.00 40.13 6.13
3683 5275 1.066929 GGATGAAAATTGCAACGGCCT 60.067 47.619 0.00 0.00 40.13 5.19
3684 5276 2.262211 GATGAAAATTGCAACGGCCTC 58.738 47.619 0.00 0.00 40.13 4.70
3685 5277 0.039617 TGAAAATTGCAACGGCCTCG 60.040 50.000 0.00 0.00 40.13 4.63
3686 5278 0.239879 GAAAATTGCAACGGCCTCGA 59.760 50.000 0.00 0.00 40.13 4.04
3687 5279 0.240945 AAAATTGCAACGGCCTCGAG 59.759 50.000 5.13 5.13 40.13 4.04
3688 5280 2.200170 AAATTGCAACGGCCTCGAGC 62.200 55.000 6.99 2.33 40.13 5.03
3689 5281 3.612247 ATTGCAACGGCCTCGAGCT 62.612 57.895 6.99 0.00 43.05 4.09
3690 5282 4.742201 TGCAACGGCCTCGAGCTC 62.742 66.667 6.99 2.73 43.05 4.09
3699 5291 2.179517 CTCGAGCTCCGTGGACAC 59.820 66.667 8.47 0.00 39.75 3.67
3700 5292 3.343788 CTCGAGCTCCGTGGACACC 62.344 68.421 8.47 0.00 39.75 4.16
3701 5293 3.374402 CGAGCTCCGTGGACACCT 61.374 66.667 8.47 0.00 0.00 4.00
3702 5294 2.574399 GAGCTCCGTGGACACCTC 59.426 66.667 0.87 0.00 0.00 3.85
3703 5295 2.203640 AGCTCCGTGGACACCTCA 60.204 61.111 0.00 0.00 0.00 3.86
3704 5296 2.048127 GCTCCGTGGACACCTCAC 60.048 66.667 0.00 0.00 0.00 3.51
3705 5297 2.657237 CTCCGTGGACACCTCACC 59.343 66.667 0.00 0.00 0.00 4.02
3706 5298 2.123208 TCCGTGGACACCTCACCA 60.123 61.111 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 146 2.223971 CGGCTCAATTGAGTACGGGTAT 60.224 50.000 30.88 0.00 43.85 2.73
226 228 3.792736 GGGATACGCTGTGGGCCA 61.793 66.667 0.00 0.00 37.74 5.36
319 321 1.061131 GACATCTGCCGTGACAATTCG 59.939 52.381 0.00 0.00 0.00 3.34
360 362 2.355599 CTAGCTGCGATGGCTCCG 60.356 66.667 0.00 0.00 40.74 4.63
447 450 2.303311 ACCTCAACTGGAGTAGGCTTTC 59.697 50.000 0.00 0.00 42.40 2.62
508 511 0.964700 CAGATCGATAGCCAGGCAGA 59.035 55.000 15.80 7.80 0.00 4.26
533 536 3.423154 CGGCGGTTCAGGACAAGC 61.423 66.667 0.00 0.00 34.15 4.01
586 589 2.051518 CAGGACTCTGAGAGCCGCT 61.052 63.158 12.44 0.00 43.49 5.52
603 606 0.676466 CACAGTTTATGAGCCGGCCA 60.676 55.000 26.15 21.45 0.00 5.36
678 681 0.546027 AGGCCCGTAGTGGTAAACCT 60.546 55.000 0.00 0.00 36.82 3.50
760 763 2.168326 TGCGACAGCTCTTCATTCAA 57.832 45.000 0.00 0.00 45.42 2.69
817 820 4.979197 CACGAGAACTGTTGAGGATATAGC 59.021 45.833 0.00 0.00 0.00 2.97
842 845 3.490399 GTTTCAACCACGTTGTTTCGAA 58.510 40.909 1.63 2.06 43.23 3.71
843 846 3.120182 GTTTCAACCACGTTGTTTCGA 57.880 42.857 1.63 0.00 43.23 3.71
863 866 2.096367 CGTCGATACAGATAGGACACGG 60.096 54.545 0.00 0.00 0.00 4.94
872 875 2.846039 GACCACACGTCGATACAGAT 57.154 50.000 0.00 0.00 0.00 2.90
892 895 4.054780 TCTCATATGTAAAGGACGCACC 57.945 45.455 1.90 0.00 39.35 5.01
958 962 1.000896 AAGGGGGATTTGCGTGGAG 60.001 57.895 0.00 0.00 0.00 3.86
964 968 1.215382 GCGTTCAAGGGGGATTTGC 59.785 57.895 0.00 0.00 0.00 3.68
1028 1063 5.220340 CCTTCGAATATAAAAGTTGCGTCGT 60.220 40.000 0.00 0.00 0.00 4.34
1057 1092 6.073980 CGTTACCTTCGAAGATTGACTTTCAA 60.074 38.462 26.61 0.00 41.09 2.69
1067 1102 3.314541 AGTTGCGTTACCTTCGAAGAT 57.685 42.857 26.61 12.79 35.04 2.40
1068 1103 2.806608 AGTTGCGTTACCTTCGAAGA 57.193 45.000 26.61 4.43 0.00 2.87
1069 1104 3.872560 AAAGTTGCGTTACCTTCGAAG 57.127 42.857 18.51 18.51 0.00 3.79
1085 1120 5.127194 TCGATGCTAGTCCACAGATAAAAGT 59.873 40.000 0.00 0.00 0.00 2.66
1109 1144 0.818296 GAGCCGATCTACTGTGGTGT 59.182 55.000 0.00 0.00 0.00 4.16
1160 1203 2.607750 AGGTCGGCCCACTGATGT 60.608 61.111 0.08 0.00 32.57 3.06
1181 1224 2.443016 CGCCCTAGGAGCTCTGGT 60.443 66.667 11.48 1.21 0.00 4.00
1184 1227 3.742248 GACCCGCCCTAGGAGCTCT 62.742 68.421 11.48 2.18 0.00 4.09
1412 1456 2.096220 TAACGATGCGGTAAAAGGCA 57.904 45.000 0.00 0.00 44.29 4.75
1521 1568 2.353803 CCTTCCGAATCTCGAACAGGTT 60.354 50.000 0.00 0.00 43.74 3.50
1556 1603 2.662700 GCGACGATATCATCTTCGGTT 58.337 47.619 14.37 0.00 46.94 4.44
1708 1756 2.173356 TCATTGCCCTTAGTGATCCCAG 59.827 50.000 0.00 0.00 0.00 4.45
1739 1787 5.364778 CCGTTGTCTTCACCAATATCCATA 58.635 41.667 0.00 0.00 0.00 2.74
1762 1810 3.817148 TTTTAACAACGAGGATTCCGC 57.183 42.857 0.00 0.00 0.00 5.54
1832 1880 5.235516 ACTTGTCCATCGTCTTCGTATTTT 58.764 37.500 0.00 0.00 38.33 1.82
1833 1881 4.817517 ACTTGTCCATCGTCTTCGTATTT 58.182 39.130 0.00 0.00 38.33 1.40
1856 1943 2.503331 TCTTCTTCGGCATTGCTCAAA 58.497 42.857 8.82 0.20 0.00 2.69
1867 1954 1.344763 ACACCACCTCTTCTTCTTCGG 59.655 52.381 0.00 0.00 0.00 4.30
1891 1978 1.267235 CGTCGATGCTTGATGCTTCAC 60.267 52.381 1.02 0.00 43.50 3.18
1970 2057 2.952978 TGCCGGTTTGTTCATTGTTACT 59.047 40.909 1.90 0.00 0.00 2.24
2121 2211 0.599558 TAGTCCAAGGTGTTCGGTCG 59.400 55.000 0.00 0.00 0.00 4.79
2170 2260 2.800544 CGGTCTTCTTCGTGTGAACAAT 59.199 45.455 0.00 0.00 0.00 2.71
2175 2265 0.039437 GCTCGGTCTTCTTCGTGTGA 60.039 55.000 0.00 0.00 0.00 3.58
2182 2272 0.107945 GATGCCAGCTCGGTCTTCTT 60.108 55.000 4.45 0.00 36.97 2.52
2191 2281 2.887568 CGGTCACGATGCCAGCTC 60.888 66.667 0.00 0.00 44.60 4.09
2194 2284 2.509336 GACCGGTCACGATGCCAG 60.509 66.667 29.75 0.00 44.60 4.85
2208 2298 2.161808 TCGACTCAAAGAGATGTCGACC 59.838 50.000 14.12 0.00 44.31 4.79
2414 2504 3.344515 GTGGATAAACTTCTTTCCCGCT 58.655 45.455 0.00 0.00 0.00 5.52
2462 2552 4.899502 ACCGTTGAGATCTTGAATTGACT 58.100 39.130 0.00 0.00 0.00 3.41
2558 2648 5.530915 TCATCCTCTGTACCAACACAAAAAG 59.469 40.000 0.00 0.00 0.00 2.27
2579 2670 3.512329 ACATGCACAATGGTTCACATCAT 59.488 39.130 0.00 0.00 40.94 2.45
2605 2696 6.612247 TGCAGAGTTAAAAGAAACGAATGA 57.388 33.333 0.00 0.00 34.46 2.57
2609 2700 9.378551 ACATATATGCAGAGTTAAAAGAAACGA 57.621 29.630 12.79 0.00 34.46 3.85
2771 4362 1.484356 CACAGCAAACAAAGCAGAGC 58.516 50.000 0.00 0.00 0.00 4.09
2772 4363 1.484356 GCACAGCAAACAAAGCAGAG 58.516 50.000 0.00 0.00 0.00 3.35
2817 4408 3.438781 GTCGCAAGTTTATCATGGAACCA 59.561 43.478 0.00 0.00 39.48 3.67
2845 4436 9.562583 GCCGATTTTTAACATGAGTAAAACATA 57.437 29.630 14.50 5.65 0.00 2.29
2846 4437 8.303876 AGCCGATTTTTAACATGAGTAAAACAT 58.696 29.630 14.50 12.05 0.00 2.71
2847 4438 7.653647 AGCCGATTTTTAACATGAGTAAAACA 58.346 30.769 14.50 9.29 0.00 2.83
2848 4439 7.272731 GGAGCCGATTTTTAACATGAGTAAAAC 59.727 37.037 14.50 7.33 0.00 2.43
2849 4440 7.175990 AGGAGCCGATTTTTAACATGAGTAAAA 59.824 33.333 0.00 7.30 0.00 1.52
2850 4441 6.657541 AGGAGCCGATTTTTAACATGAGTAAA 59.342 34.615 0.00 0.84 0.00 2.01
2851 4442 6.093495 CAGGAGCCGATTTTTAACATGAGTAA 59.907 38.462 0.00 0.00 0.00 2.24
2852 4443 5.584649 CAGGAGCCGATTTTTAACATGAGTA 59.415 40.000 0.00 0.00 0.00 2.59
2853 4444 4.396166 CAGGAGCCGATTTTTAACATGAGT 59.604 41.667 0.00 0.00 0.00 3.41
2854 4445 4.731773 GCAGGAGCCGATTTTTAACATGAG 60.732 45.833 0.00 0.00 33.58 2.90
2855 4446 3.128589 GCAGGAGCCGATTTTTAACATGA 59.871 43.478 0.00 0.00 33.58 3.07
2856 4447 3.129287 AGCAGGAGCCGATTTTTAACATG 59.871 43.478 0.00 0.00 43.56 3.21
2857 4448 3.129287 CAGCAGGAGCCGATTTTTAACAT 59.871 43.478 0.00 0.00 43.56 2.71
2858 4449 2.487762 CAGCAGGAGCCGATTTTTAACA 59.512 45.455 0.00 0.00 43.56 2.41
2859 4450 2.732282 GCAGCAGGAGCCGATTTTTAAC 60.732 50.000 0.00 0.00 43.56 2.01
2860 4451 1.472480 GCAGCAGGAGCCGATTTTTAA 59.528 47.619 0.00 0.00 43.56 1.52
2861 4452 1.094785 GCAGCAGGAGCCGATTTTTA 58.905 50.000 0.00 0.00 43.56 1.52
2862 4453 0.610232 AGCAGCAGGAGCCGATTTTT 60.610 50.000 0.00 0.00 43.56 1.94
2863 4454 1.001641 AGCAGCAGGAGCCGATTTT 60.002 52.632 0.00 0.00 43.56 1.82
2864 4455 1.451028 GAGCAGCAGGAGCCGATTT 60.451 57.895 0.00 0.00 43.56 2.17
2865 4456 2.188994 GAGCAGCAGGAGCCGATT 59.811 61.111 0.00 0.00 43.56 3.34
2866 4457 3.859414 GGAGCAGCAGGAGCCGAT 61.859 66.667 0.00 0.00 43.56 4.18
2868 4459 4.834453 CTGGAGCAGCAGGAGCCG 62.834 72.222 0.00 0.00 43.56 5.52
2869 4460 4.486503 CCTGGAGCAGCAGGAGCC 62.487 72.222 0.00 0.00 43.56 4.70
2870 4461 4.486503 CCCTGGAGCAGCAGGAGC 62.487 72.222 0.00 0.00 40.95 4.70
2871 4462 3.007920 ACCCTGGAGCAGCAGGAG 61.008 66.667 0.00 0.00 40.95 3.69
2872 4463 3.324930 CACCCTGGAGCAGCAGGA 61.325 66.667 0.00 0.00 40.95 3.86
2873 4464 4.421515 CCACCCTGGAGCAGCAGG 62.422 72.222 0.00 0.00 40.96 4.85
2874 4465 2.293318 TACCACCCTGGAGCAGCAG 61.293 63.158 0.00 0.00 40.96 4.24
2875 4466 2.203922 TACCACCCTGGAGCAGCA 60.204 61.111 0.00 0.00 40.96 4.41
2876 4467 2.269241 GTACCACCCTGGAGCAGC 59.731 66.667 0.00 0.00 40.96 5.25
2877 4468 2.990479 GGTACCACCCTGGAGCAG 59.010 66.667 7.15 0.00 40.96 4.24
2890 4481 1.179814 ATGGCCGATCGAGAGGGTAC 61.180 60.000 18.66 0.00 0.00 3.34
2891 4482 0.402887 TATGGCCGATCGAGAGGGTA 59.597 55.000 18.66 0.00 0.00 3.69
2892 4483 0.896019 CTATGGCCGATCGAGAGGGT 60.896 60.000 18.66 0.00 0.00 4.34
2893 4484 0.896019 ACTATGGCCGATCGAGAGGG 60.896 60.000 18.66 0.00 0.00 4.30
2894 4485 0.962489 AACTATGGCCGATCGAGAGG 59.038 55.000 18.66 0.00 0.00 3.69
2895 4486 3.763902 CATAACTATGGCCGATCGAGAG 58.236 50.000 18.66 6.01 0.00 3.20
2896 4487 2.094700 GCATAACTATGGCCGATCGAGA 60.095 50.000 18.66 0.00 34.32 4.04
2897 4488 2.094494 AGCATAACTATGGCCGATCGAG 60.094 50.000 18.66 8.02 34.32 4.04
2898 4489 1.893137 AGCATAACTATGGCCGATCGA 59.107 47.619 18.66 0.00 34.32 3.59
2899 4490 2.263077 GAGCATAACTATGGCCGATCG 58.737 52.381 8.51 8.51 34.32 3.69
2900 4491 2.028112 TGGAGCATAACTATGGCCGATC 60.028 50.000 0.00 0.00 34.32 3.69
2901 4492 1.977854 TGGAGCATAACTATGGCCGAT 59.022 47.619 0.00 0.00 34.32 4.18
2902 4493 1.419381 TGGAGCATAACTATGGCCGA 58.581 50.000 0.00 0.00 34.32 5.54
2903 4494 2.079158 CATGGAGCATAACTATGGCCG 58.921 52.381 0.00 0.00 34.32 6.13
2904 4495 2.440409 CCATGGAGCATAACTATGGCC 58.560 52.381 5.56 0.00 38.95 5.36
2906 4497 2.440409 GGCCATGGAGCATAACTATGG 58.560 52.381 18.40 0.00 45.12 2.74
2907 4498 2.079158 CGGCCATGGAGCATAACTATG 58.921 52.381 18.40 0.00 36.78 2.23
2908 4499 1.611673 GCGGCCATGGAGCATAACTAT 60.612 52.381 18.40 0.00 0.00 2.12
2909 4500 0.250295 GCGGCCATGGAGCATAACTA 60.250 55.000 18.40 0.00 0.00 2.24
2910 4501 1.526917 GCGGCCATGGAGCATAACT 60.527 57.895 18.40 0.00 0.00 2.24
2911 4502 1.526917 AGCGGCCATGGAGCATAAC 60.527 57.895 27.15 5.23 0.00 1.89
2912 4503 1.526686 CAGCGGCCATGGAGCATAA 60.527 57.895 27.15 0.00 0.00 1.90
2913 4504 2.111669 CAGCGGCCATGGAGCATA 59.888 61.111 27.15 0.00 0.00 3.14
2914 4505 3.800833 TCAGCGGCCATGGAGCAT 61.801 61.111 27.15 14.06 0.00 3.79
2915 4506 4.783621 GTCAGCGGCCATGGAGCA 62.784 66.667 27.15 10.83 0.00 4.26
2917 4508 4.147449 TCGTCAGCGGCCATGGAG 62.147 66.667 18.40 9.81 38.89 3.86
2918 4509 4.147449 CTCGTCAGCGGCCATGGA 62.147 66.667 18.40 0.00 38.89 3.41
2928 4519 3.255017 GAGATGCTCAGCTCGTCAG 57.745 57.895 0.00 0.00 33.93 3.51
2940 4531 0.588233 CATCGTTTGCAGCGAGATGC 60.588 55.000 17.80 6.36 46.68 3.91
2941 4532 1.001624 TCATCGTTTGCAGCGAGATG 58.998 50.000 17.80 15.65 41.83 2.90
2942 4533 1.662629 CTTCATCGTTTGCAGCGAGAT 59.337 47.619 17.80 6.04 41.83 2.75
2943 4534 1.070821 CTTCATCGTTTGCAGCGAGA 58.929 50.000 17.80 13.03 41.83 4.04
2944 4535 0.519999 GCTTCATCGTTTGCAGCGAG 60.520 55.000 17.80 11.44 41.83 5.03
2945 4536 1.497278 GCTTCATCGTTTGCAGCGA 59.503 52.632 15.81 15.81 42.75 4.93
2946 4537 4.047030 GCTTCATCGTTTGCAGCG 57.953 55.556 6.44 6.44 34.91 5.18
2947 4538 1.069022 TGAAGCTTCATCGTTTGCAGC 60.069 47.619 25.16 5.06 43.96 5.25
2948 4539 2.847901 CTGAAGCTTCATCGTTTGCAG 58.152 47.619 28.57 10.57 36.46 4.41
2949 4540 1.069022 GCTGAAGCTTCATCGTTTGCA 60.069 47.619 28.57 4.09 36.46 4.08
2950 4541 1.069022 TGCTGAAGCTTCATCGTTTGC 60.069 47.619 28.57 25.04 42.66 3.68
2951 4542 2.847901 CTGCTGAAGCTTCATCGTTTG 58.152 47.619 28.57 16.85 42.66 2.93
2963 4554 1.788258 TTCAGTTCGAGCTGCTGAAG 58.212 50.000 22.97 0.04 42.24 3.02
2964 4555 1.788258 CTTCAGTTCGAGCTGCTGAA 58.212 50.000 22.97 19.28 44.08 3.02
2965 4556 0.668706 GCTTCAGTTCGAGCTGCTGA 60.669 55.000 22.97 14.04 37.47 4.26
2966 4557 1.633852 GGCTTCAGTTCGAGCTGCTG 61.634 60.000 22.97 17.69 36.49 4.41
2967 4558 1.375268 GGCTTCAGTTCGAGCTGCT 60.375 57.895 22.97 0.00 36.49 4.24
2968 4559 2.394563 GGGCTTCAGTTCGAGCTGC 61.395 63.158 22.97 12.39 36.49 5.25
2969 4560 1.743252 GGGGCTTCAGTTCGAGCTG 60.743 63.158 21.93 21.93 37.81 4.24
2970 4561 2.665603 GGGGCTTCAGTTCGAGCT 59.334 61.111 0.00 0.00 0.00 4.09
2971 4562 2.815647 CGGGGCTTCAGTTCGAGC 60.816 66.667 0.00 0.00 0.00 5.03
2972 4563 2.125512 CCGGGGCTTCAGTTCGAG 60.126 66.667 0.00 0.00 0.00 4.04
2973 4564 4.388499 GCCGGGGCTTCAGTTCGA 62.388 66.667 2.18 0.00 38.26 3.71
2974 4565 3.976701 ATGCCGGGGCTTCAGTTCG 62.977 63.158 11.55 0.00 42.51 3.95
2975 4566 2.044946 ATGCCGGGGCTTCAGTTC 60.045 61.111 11.55 0.00 42.51 3.01
2976 4567 1.847798 TACATGCCGGGGCTTCAGTT 61.848 55.000 11.55 0.00 42.51 3.16
2977 4568 2.257409 CTACATGCCGGGGCTTCAGT 62.257 60.000 11.55 6.68 42.51 3.41
2978 4569 1.524621 CTACATGCCGGGGCTTCAG 60.525 63.158 11.55 0.90 42.51 3.02
2979 4570 2.589540 CTACATGCCGGGGCTTCA 59.410 61.111 11.55 0.00 42.51 3.02
2980 4571 2.902343 GCTACATGCCGGGGCTTC 60.902 66.667 11.55 0.00 42.51 3.86
2981 4572 3.704231 CTGCTACATGCCGGGGCTT 62.704 63.158 11.55 1.25 42.00 4.35
2982 4573 4.181010 CTGCTACATGCCGGGGCT 62.181 66.667 11.55 0.00 42.00 5.19
2983 4574 4.175337 TCTGCTACATGCCGGGGC 62.175 66.667 2.18 1.86 42.00 5.80
2984 4575 2.203070 GTCTGCTACATGCCGGGG 60.203 66.667 2.18 0.00 42.00 5.73
2985 4576 2.203070 GGTCTGCTACATGCCGGG 60.203 66.667 2.18 0.00 42.00 5.73
2986 4577 2.203070 GGGTCTGCTACATGCCGG 60.203 66.667 0.00 0.00 42.00 6.13
2987 4578 2.203070 GGGGTCTGCTACATGCCG 60.203 66.667 0.00 0.00 42.00 5.69
2988 4579 2.203070 CGGGGTCTGCTACATGCC 60.203 66.667 0.00 0.00 42.00 4.40
2989 4580 2.203070 CCGGGGTCTGCTACATGC 60.203 66.667 0.00 0.00 43.25 4.06
2990 4581 2.203070 GCCGGGGTCTGCTACATG 60.203 66.667 2.18 0.00 0.00 3.21
2991 4582 3.849951 CGCCGGGGTCTGCTACAT 61.850 66.667 11.01 0.00 0.00 2.29
2993 4584 4.509737 GACGCCGGGGTCTGCTAC 62.510 72.222 36.72 16.11 34.09 3.58
2998 4589 4.779733 ATGAGGACGCCGGGGTCT 62.780 66.667 40.01 29.27 37.12 3.85
2999 4590 4.222847 GATGAGGACGCCGGGGTC 62.223 72.222 36.52 36.52 36.18 4.46
3001 4592 3.521529 GATGATGAGGACGCCGGGG 62.522 68.421 18.33 18.33 0.00 5.73
3002 4593 1.179174 TAGATGATGAGGACGCCGGG 61.179 60.000 2.18 0.00 0.00 5.73
3003 4594 0.891373 ATAGATGATGAGGACGCCGG 59.109 55.000 0.00 0.00 0.00 6.13
3004 4595 2.732412 AATAGATGATGAGGACGCCG 57.268 50.000 0.00 0.00 0.00 6.46
3005 4596 5.934625 ACAATTAATAGATGATGAGGACGCC 59.065 40.000 0.00 0.00 0.00 5.68
3006 4597 6.619446 GCACAATTAATAGATGATGAGGACGC 60.619 42.308 0.00 0.00 0.00 5.19
3007 4598 6.424812 TGCACAATTAATAGATGATGAGGACG 59.575 38.462 0.00 0.00 0.00 4.79
3008 4599 7.227314 TGTGCACAATTAATAGATGATGAGGAC 59.773 37.037 19.28 0.00 0.00 3.85
3009 4600 7.227314 GTGTGCACAATTAATAGATGATGAGGA 59.773 37.037 23.59 0.00 0.00 3.71
3010 4601 7.358066 GTGTGCACAATTAATAGATGATGAGG 58.642 38.462 23.59 0.00 0.00 3.86
3011 4602 7.067728 CGTGTGCACAATTAATAGATGATGAG 58.932 38.462 23.59 0.00 0.00 2.90
3012 4603 6.538381 ACGTGTGCACAATTAATAGATGATGA 59.462 34.615 23.59 0.00 0.00 2.92
3013 4604 6.718388 ACGTGTGCACAATTAATAGATGATG 58.282 36.000 23.59 1.68 0.00 3.07
3014 4605 6.925610 ACGTGTGCACAATTAATAGATGAT 57.074 33.333 23.59 0.00 0.00 2.45
3015 4606 6.814146 TGTACGTGTGCACAATTAATAGATGA 59.186 34.615 23.59 0.00 0.00 2.92
3016 4607 6.899771 GTGTACGTGTGCACAATTAATAGATG 59.100 38.462 23.59 3.25 44.06 2.90
3017 4608 7.000575 GTGTACGTGTGCACAATTAATAGAT 57.999 36.000 23.59 1.93 44.06 1.98
3018 4609 6.397831 GTGTACGTGTGCACAATTAATAGA 57.602 37.500 23.59 5.54 44.06 1.98
3036 4627 0.387750 GACGGAAGGGTCGTGTGTAC 60.388 60.000 0.00 0.00 41.22 2.90
3037 4628 1.526575 GGACGGAAGGGTCGTGTGTA 61.527 60.000 0.00 0.00 41.22 2.90
3038 4629 2.732658 GACGGAAGGGTCGTGTGT 59.267 61.111 0.00 0.00 41.22 3.72
3039 4630 2.048503 GGACGGAAGGGTCGTGTG 60.049 66.667 0.00 0.00 41.22 3.82
3040 4631 3.677648 CGGACGGAAGGGTCGTGT 61.678 66.667 0.00 0.00 41.22 4.49
3043 4634 4.796231 CTGCGGACGGAAGGGTCG 62.796 72.222 0.00 0.00 37.82 4.79
3044 4635 3.644399 GACTGCGGACGGAAGGGTC 62.644 68.421 0.00 0.00 36.18 4.46
3045 4636 2.776370 TAGACTGCGGACGGAAGGGT 62.776 60.000 0.00 0.00 0.00 4.34
3046 4637 2.050350 TAGACTGCGGACGGAAGGG 61.050 63.158 0.00 0.00 0.00 3.95
3047 4638 1.139095 GTAGACTGCGGACGGAAGG 59.861 63.158 0.00 0.00 0.00 3.46
3048 4639 0.456312 GTGTAGACTGCGGACGGAAG 60.456 60.000 0.00 0.00 0.00 3.46
3049 4640 1.174078 TGTGTAGACTGCGGACGGAA 61.174 55.000 0.00 0.00 0.00 4.30
3050 4641 1.601477 TGTGTAGACTGCGGACGGA 60.601 57.895 0.00 0.00 0.00 4.69
3051 4642 1.443872 GTGTGTAGACTGCGGACGG 60.444 63.158 0.00 0.00 0.00 4.79
3052 4643 1.796355 CGTGTGTAGACTGCGGACG 60.796 63.158 0.00 0.00 0.00 4.79
3053 4644 0.728466 GTCGTGTGTAGACTGCGGAC 60.728 60.000 0.00 0.00 35.84 4.79
3054 4645 1.577922 GTCGTGTGTAGACTGCGGA 59.422 57.895 0.00 0.00 35.84 5.54
3055 4646 1.796355 CGTCGTGTGTAGACTGCGG 60.796 63.158 0.00 0.00 36.53 5.69
3056 4647 2.426183 GCGTCGTGTGTAGACTGCG 61.426 63.158 0.00 0.00 36.53 5.18
3057 4648 2.087009 GGCGTCGTGTGTAGACTGC 61.087 63.158 0.00 5.22 37.39 4.40
3058 4649 1.796355 CGGCGTCGTGTGTAGACTG 60.796 63.158 0.00 0.00 36.53 3.51
3059 4650 2.559840 CGGCGTCGTGTGTAGACT 59.440 61.111 0.00 0.00 36.53 3.24
3060 4651 3.170585 GCGGCGTCGTGTGTAGAC 61.171 66.667 12.58 0.00 38.89 2.59
3061 4652 3.318539 GAGCGGCGTCGTGTGTAGA 62.319 63.158 12.58 0.00 38.89 2.59
3062 4653 2.874780 GAGCGGCGTCGTGTGTAG 60.875 66.667 12.58 0.00 38.89 2.74
3063 4654 3.318539 GAGAGCGGCGTCGTGTGTA 62.319 63.158 12.58 0.00 38.89 2.90
3064 4655 4.702081 GAGAGCGGCGTCGTGTGT 62.702 66.667 12.58 0.00 38.89 3.72
3065 4656 4.406173 AGAGAGCGGCGTCGTGTG 62.406 66.667 12.58 0.00 38.89 3.82
3066 4657 4.406173 CAGAGAGCGGCGTCGTGT 62.406 66.667 12.58 0.00 38.89 4.49
3067 4658 4.406173 ACAGAGAGCGGCGTCGTG 62.406 66.667 12.58 2.82 38.89 4.35
3068 4659 4.406173 CACAGAGAGCGGCGTCGT 62.406 66.667 12.58 0.00 38.89 4.34
3070 4661 3.997064 ATGCACAGAGAGCGGCGTC 62.997 63.158 9.37 5.00 33.85 5.19
3071 4662 4.074526 ATGCACAGAGAGCGGCGT 62.075 61.111 9.37 0.00 33.85 5.68
3072 4663 3.561213 CATGCACAGAGAGCGGCG 61.561 66.667 0.51 0.51 33.85 6.46
3073 4664 3.873883 GCATGCACAGAGAGCGGC 61.874 66.667 14.21 0.00 33.85 6.53
3074 4665 2.435410 TGCATGCACAGAGAGCGG 60.435 61.111 18.46 0.00 33.85 5.52
3075 4666 1.694018 GACTGCATGCACAGAGAGCG 61.694 60.000 18.46 7.05 40.25 5.03
3076 4667 0.391395 AGACTGCATGCACAGAGAGC 60.391 55.000 18.46 5.36 40.25 4.09
3077 4668 1.360820 CAGACTGCATGCACAGAGAG 58.639 55.000 18.46 8.68 40.25 3.20
3078 4669 0.672711 GCAGACTGCATGCACAGAGA 60.673 55.000 22.62 0.00 44.26 3.10
3079 4670 1.794864 GCAGACTGCATGCACAGAG 59.205 57.895 22.62 9.91 44.26 3.35
3080 4671 2.030958 CGCAGACTGCATGCACAGA 61.031 57.895 26.32 0.00 45.36 3.41
3081 4672 2.479198 CGCAGACTGCATGCACAG 59.521 61.111 26.32 11.15 45.36 3.66
3082 4673 3.729698 GCGCAGACTGCATGCACA 61.730 61.111 26.32 0.00 45.36 4.57
3083 4674 4.806481 CGCGCAGACTGCATGCAC 62.806 66.667 26.32 8.42 45.36 4.57
3110 4701 4.717629 GAAAACTTGCCGGCCGCC 62.718 66.667 26.77 10.41 36.24 6.13
3111 4702 3.972276 TGAAAACTTGCCGGCCGC 61.972 61.111 26.77 16.45 38.31 6.53
3112 4703 2.050442 GTGAAAACTTGCCGGCCG 60.050 61.111 26.77 21.04 0.00 6.13
3113 4704 2.338620 GGTGAAAACTTGCCGGCC 59.661 61.111 26.77 6.84 0.00 6.13
3152 4743 2.035066 GGCTCCGGATGGATCAAAAATG 59.965 50.000 3.57 0.00 45.33 2.32
3280 4871 2.482796 ATCGGTGATGCCCAGTTGCA 62.483 55.000 0.00 0.00 46.94 4.08
3325 4916 4.424566 CACCGCCATTGCAGCACC 62.425 66.667 0.00 0.00 37.32 5.01
3382 4973 2.512896 CTCATAGCCCCACAGCCC 59.487 66.667 0.00 0.00 0.00 5.19
3386 4977 2.561209 TTACTCCTCATAGCCCCACA 57.439 50.000 0.00 0.00 0.00 4.17
3428 5019 7.072328 ACAGGTAGTTTTTGTTACCCTAACCTA 59.928 37.037 0.00 0.00 40.16 3.08
3466 5058 9.772973 ATTTGGGTTTTTAAGTAGCTTTTTAGG 57.227 29.630 0.00 0.00 0.00 2.69
3478 5070 5.762218 TCACATGGCAATTTGGGTTTTTAAG 59.238 36.000 0.00 0.00 0.00 1.85
3479 5071 5.684704 TCACATGGCAATTTGGGTTTTTAA 58.315 33.333 0.00 0.00 0.00 1.52
3480 5072 5.296151 TCACATGGCAATTTGGGTTTTTA 57.704 34.783 0.00 0.00 0.00 1.52
3481 5073 4.162040 TCACATGGCAATTTGGGTTTTT 57.838 36.364 0.00 0.00 0.00 1.94
3482 5074 3.853355 TCACATGGCAATTTGGGTTTT 57.147 38.095 0.00 0.00 0.00 2.43
3483 5075 4.370094 AATCACATGGCAATTTGGGTTT 57.630 36.364 0.00 0.00 0.00 3.27
3484 5076 5.495926 TTAATCACATGGCAATTTGGGTT 57.504 34.783 0.00 0.00 0.00 4.11
3485 5077 5.495926 TTTAATCACATGGCAATTTGGGT 57.504 34.783 0.00 0.00 0.00 4.51
3486 5078 7.393841 AATTTTAATCACATGGCAATTTGGG 57.606 32.000 0.00 0.00 0.00 4.12
3487 5079 7.755822 CCAAATTTTAATCACATGGCAATTTGG 59.244 33.333 15.47 15.47 46.18 3.28
3488 5080 7.755822 CCCAAATTTTAATCACATGGCAATTTG 59.244 33.333 0.00 0.00 38.77 2.32
3489 5081 7.093858 CCCCAAATTTTAATCACATGGCAATTT 60.094 33.333 0.00 0.00 0.00 1.82
3490 5082 6.377712 CCCCAAATTTTAATCACATGGCAATT 59.622 34.615 0.00 0.00 0.00 2.32
3491 5083 5.887035 CCCCAAATTTTAATCACATGGCAAT 59.113 36.000 0.00 0.00 0.00 3.56
3492 5084 5.013495 TCCCCAAATTTTAATCACATGGCAA 59.987 36.000 0.00 0.00 0.00 4.52
3493 5085 4.533707 TCCCCAAATTTTAATCACATGGCA 59.466 37.500 0.00 0.00 0.00 4.92
3494 5086 4.875536 GTCCCCAAATTTTAATCACATGGC 59.124 41.667 0.00 0.00 0.00 4.40
3495 5087 6.070881 TCAGTCCCCAAATTTTAATCACATGG 60.071 38.462 0.00 0.00 0.00 3.66
3496 5088 6.934056 TCAGTCCCCAAATTTTAATCACATG 58.066 36.000 0.00 0.00 0.00 3.21
3497 5089 7.399765 TCATCAGTCCCCAAATTTTAATCACAT 59.600 33.333 0.00 0.00 0.00 3.21
3498 5090 6.723515 TCATCAGTCCCCAAATTTTAATCACA 59.276 34.615 0.00 0.00 0.00 3.58
3499 5091 7.093771 ACTCATCAGTCCCCAAATTTTAATCAC 60.094 37.037 0.00 0.00 0.00 3.06
3500 5092 6.953520 ACTCATCAGTCCCCAAATTTTAATCA 59.046 34.615 0.00 0.00 0.00 2.57
3501 5093 7.260603 CACTCATCAGTCCCCAAATTTTAATC 58.739 38.462 0.00 0.00 0.00 1.75
3502 5094 6.351286 GCACTCATCAGTCCCCAAATTTTAAT 60.351 38.462 0.00 0.00 0.00 1.40
3503 5095 5.047377 GCACTCATCAGTCCCCAAATTTTAA 60.047 40.000 0.00 0.00 0.00 1.52
3504 5096 4.462483 GCACTCATCAGTCCCCAAATTTTA 59.538 41.667 0.00 0.00 0.00 1.52
3505 5097 3.259123 GCACTCATCAGTCCCCAAATTTT 59.741 43.478 0.00 0.00 0.00 1.82
3506 5098 2.827921 GCACTCATCAGTCCCCAAATTT 59.172 45.455 0.00 0.00 0.00 1.82
3507 5099 2.450476 GCACTCATCAGTCCCCAAATT 58.550 47.619 0.00 0.00 0.00 1.82
3508 5100 1.341383 GGCACTCATCAGTCCCCAAAT 60.341 52.381 0.00 0.00 0.00 2.32
3509 5101 0.038166 GGCACTCATCAGTCCCCAAA 59.962 55.000 0.00 0.00 0.00 3.28
3510 5102 1.685224 GGCACTCATCAGTCCCCAA 59.315 57.895 0.00 0.00 0.00 4.12
3511 5103 2.659063 CGGCACTCATCAGTCCCCA 61.659 63.158 0.00 0.00 23.37 4.96
3512 5104 2.187946 CGGCACTCATCAGTCCCC 59.812 66.667 0.00 0.00 23.37 4.81
3513 5105 2.187946 CCGGCACTCATCAGTCCC 59.812 66.667 0.00 0.00 0.00 4.46
3514 5106 2.512515 GCCGGCACTCATCAGTCC 60.513 66.667 24.80 0.00 0.00 3.85
3515 5107 2.887568 CGCCGGCACTCATCAGTC 60.888 66.667 28.98 0.00 0.00 3.51
3532 5124 3.977244 CAACTGTTGGGCCGGTGC 61.977 66.667 12.66 0.00 0.00 5.01
3541 5133 3.353836 CGACCGGCCCAACTGTTG 61.354 66.667 13.50 13.50 0.00 3.33
3542 5134 3.530910 CTCGACCGGCCCAACTGTT 62.531 63.158 0.00 0.00 0.00 3.16
3543 5135 4.003788 CTCGACCGGCCCAACTGT 62.004 66.667 0.00 0.00 0.00 3.55
3557 5149 2.035237 TATTAGGCGGTTGGGGCTCG 62.035 60.000 0.00 0.00 42.48 5.03
3558 5150 0.400594 ATATTAGGCGGTTGGGGCTC 59.599 55.000 0.00 0.00 42.48 4.70
3559 5151 1.628846 CTATATTAGGCGGTTGGGGCT 59.371 52.381 0.00 0.00 45.70 5.19
3560 5152 1.949079 GCTATATTAGGCGGTTGGGGC 60.949 57.143 0.00 0.00 0.00 5.80
3561 5153 1.674817 CGCTATATTAGGCGGTTGGGG 60.675 57.143 8.77 0.00 46.42 4.96
3562 5154 1.722011 CGCTATATTAGGCGGTTGGG 58.278 55.000 8.77 0.00 46.42 4.12
3569 5161 5.024785 AGGCCTTAATCGCTATATTAGGC 57.975 43.478 0.00 0.00 36.24 3.93
3570 5162 6.640518 TGAAGGCCTTAATCGCTATATTAGG 58.359 40.000 20.54 0.00 0.00 2.69
3571 5163 7.548097 TCTGAAGGCCTTAATCGCTATATTAG 58.452 38.462 20.54 0.00 0.00 1.73
3572 5164 7.476540 TCTGAAGGCCTTAATCGCTATATTA 57.523 36.000 20.54 0.00 0.00 0.98
3573 5165 6.360370 TCTGAAGGCCTTAATCGCTATATT 57.640 37.500 20.54 0.00 0.00 1.28
3574 5166 6.382570 AGATCTGAAGGCCTTAATCGCTATAT 59.617 38.462 20.54 2.05 0.00 0.86
3575 5167 5.717178 AGATCTGAAGGCCTTAATCGCTATA 59.283 40.000 20.54 0.00 0.00 1.31
3576 5168 4.530161 AGATCTGAAGGCCTTAATCGCTAT 59.470 41.667 20.54 5.35 0.00 2.97
3577 5169 3.898123 AGATCTGAAGGCCTTAATCGCTA 59.102 43.478 20.54 0.04 0.00 4.26
3578 5170 2.703007 AGATCTGAAGGCCTTAATCGCT 59.297 45.455 20.54 10.80 0.00 4.93
3579 5171 2.805099 CAGATCTGAAGGCCTTAATCGC 59.195 50.000 20.54 6.03 0.00 4.58
3580 5172 4.327982 TCAGATCTGAAGGCCTTAATCG 57.672 45.455 23.17 16.03 36.53 3.34
3591 5183 2.611971 CGAAACGGGGTTCAGATCTGAA 60.612 50.000 30.05 30.05 46.27 3.02
3592 5184 1.067142 CGAAACGGGGTTCAGATCTGA 60.067 52.381 21.67 21.67 37.91 3.27
3593 5185 1.337823 ACGAAACGGGGTTCAGATCTG 60.338 52.381 17.07 17.07 0.00 2.90
3594 5186 0.974383 ACGAAACGGGGTTCAGATCT 59.026 50.000 0.00 0.00 0.00 2.75
3595 5187 1.356938 GACGAAACGGGGTTCAGATC 58.643 55.000 0.00 0.00 0.00 2.75
3596 5188 0.036671 GGACGAAACGGGGTTCAGAT 60.037 55.000 0.00 0.00 0.00 2.90
3597 5189 1.117142 AGGACGAAACGGGGTTCAGA 61.117 55.000 0.00 0.00 0.00 3.27
3598 5190 0.669625 GAGGACGAAACGGGGTTCAG 60.670 60.000 0.00 0.00 0.00 3.02
3599 5191 1.368579 GAGGACGAAACGGGGTTCA 59.631 57.895 0.00 0.00 0.00 3.18
3600 5192 1.375140 GGAGGACGAAACGGGGTTC 60.375 63.158 0.00 0.00 0.00 3.62
3601 5193 1.824224 GAGGAGGACGAAACGGGGTT 61.824 60.000 0.00 0.00 0.00 4.11
3602 5194 2.203743 AGGAGGACGAAACGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
3603 5195 2.577593 GAGGAGGACGAAACGGGG 59.422 66.667 0.00 0.00 0.00 5.73
3604 5196 2.181021 CGAGGAGGACGAAACGGG 59.819 66.667 0.00 0.00 0.00 5.28
3605 5197 2.506438 GCGAGGAGGACGAAACGG 60.506 66.667 0.00 0.00 0.00 4.44
3606 5198 1.801913 CTGCGAGGAGGACGAAACG 60.802 63.158 0.00 0.00 0.00 3.60
3607 5199 0.733223 GACTGCGAGGAGGACGAAAC 60.733 60.000 0.00 0.00 0.00 2.78
3608 5200 1.585006 GACTGCGAGGAGGACGAAA 59.415 57.895 0.00 0.00 0.00 3.46
3609 5201 2.687805 CGACTGCGAGGAGGACGAA 61.688 63.158 0.00 0.00 40.82 3.85
3610 5202 3.125573 CGACTGCGAGGAGGACGA 61.126 66.667 0.00 0.00 40.82 4.20
3611 5203 2.852431 GAACGACTGCGAGGAGGACG 62.852 65.000 10.35 10.35 41.64 4.79
3612 5204 1.153997 GAACGACTGCGAGGAGGAC 60.154 63.158 0.00 0.00 41.64 3.85
3613 5205 2.341101 GGAACGACTGCGAGGAGGA 61.341 63.158 0.00 0.00 41.64 3.71
3614 5206 2.182030 GGAACGACTGCGAGGAGG 59.818 66.667 0.00 0.00 41.64 4.30
3615 5207 2.182030 GGGAACGACTGCGAGGAG 59.818 66.667 0.00 0.00 41.64 3.69
3616 5208 3.379445 GGGGAACGACTGCGAGGA 61.379 66.667 0.00 0.00 41.64 3.71
3617 5209 3.691342 TGGGGAACGACTGCGAGG 61.691 66.667 0.00 0.00 41.64 4.63
3618 5210 2.432628 GTGGGGAACGACTGCGAG 60.433 66.667 0.00 0.00 41.64 5.03
3619 5211 3.228017 TGTGGGGAACGACTGCGA 61.228 61.111 0.00 0.00 40.14 5.10
3620 5212 3.041940 GTGTGGGGAACGACTGCG 61.042 66.667 0.00 0.00 40.14 5.18
3621 5213 2.668550 GGTGTGGGGAACGACTGC 60.669 66.667 0.00 0.00 40.14 4.40
3622 5214 2.032071 GGGTGTGGGGAACGACTG 59.968 66.667 0.00 0.00 40.14 3.51
3623 5215 2.446994 TGGGTGTGGGGAACGACT 60.447 61.111 0.00 0.00 40.14 4.18
3624 5216 2.281276 GTGGGTGTGGGGAACGAC 60.281 66.667 0.00 0.00 39.85 4.34
3625 5217 3.562232 GGTGGGTGTGGGGAACGA 61.562 66.667 0.00 0.00 0.00 3.85
3626 5218 4.653888 GGGTGGGTGTGGGGAACG 62.654 72.222 0.00 0.00 0.00 3.95
3627 5219 3.182996 AGGGTGGGTGTGGGGAAC 61.183 66.667 0.00 0.00 0.00 3.62
3628 5220 2.856988 GAGGGTGGGTGTGGGGAA 60.857 66.667 0.00 0.00 0.00 3.97
3629 5221 4.995058 GGAGGGTGGGTGTGGGGA 62.995 72.222 0.00 0.00 0.00 4.81
3633 5225 3.330720 GAGGGGAGGGTGGGTGTG 61.331 72.222 0.00 0.00 0.00 3.82
3634 5226 4.677151 GGAGGGGAGGGTGGGTGT 62.677 72.222 0.00 0.00 0.00 4.16
3643 5235 4.862823 GAGGGGACGGGAGGGGAG 62.863 77.778 0.00 0.00 0.00 4.30
3658 5250 2.731968 CGTTGCAATTTTCATCCCGGAG 60.732 50.000 0.73 0.00 0.00 4.63
3659 5251 1.201181 CGTTGCAATTTTCATCCCGGA 59.799 47.619 0.73 0.00 0.00 5.14
3660 5252 1.627879 CGTTGCAATTTTCATCCCGG 58.372 50.000 0.59 0.00 0.00 5.73
3661 5253 1.627879 CCGTTGCAATTTTCATCCCG 58.372 50.000 0.59 0.00 0.00 5.14
3662 5254 1.358877 GCCGTTGCAATTTTCATCCC 58.641 50.000 0.59 0.00 37.47 3.85
3663 5255 1.066929 AGGCCGTTGCAATTTTCATCC 60.067 47.619 0.59 0.00 40.13 3.51
3664 5256 2.262211 GAGGCCGTTGCAATTTTCATC 58.738 47.619 0.59 0.00 40.13 2.92
3665 5257 1.402720 CGAGGCCGTTGCAATTTTCAT 60.403 47.619 0.59 0.00 40.13 2.57
3666 5258 0.039617 CGAGGCCGTTGCAATTTTCA 60.040 50.000 0.59 0.00 40.13 2.69
3667 5259 0.239879 TCGAGGCCGTTGCAATTTTC 59.760 50.000 0.59 0.00 40.13 2.29
3668 5260 0.240945 CTCGAGGCCGTTGCAATTTT 59.759 50.000 0.59 0.00 40.13 1.82
3669 5261 1.875963 CTCGAGGCCGTTGCAATTT 59.124 52.632 0.59 0.00 40.13 1.82
3670 5262 2.690778 GCTCGAGGCCGTTGCAATT 61.691 57.895 15.58 0.00 40.13 2.32
3671 5263 3.127533 GCTCGAGGCCGTTGCAAT 61.128 61.111 15.58 0.00 40.13 3.56
3672 5264 4.314440 AGCTCGAGGCCGTTGCAA 62.314 61.111 15.58 0.00 43.05 4.08
3673 5265 4.742201 GAGCTCGAGGCCGTTGCA 62.742 66.667 15.58 0.00 43.05 4.08
3680 5272 4.500116 GTCCACGGAGCTCGAGGC 62.500 72.222 15.58 6.66 46.81 4.70
3682 5274 2.179517 GTGTCCACGGAGCTCGAG 59.820 66.667 8.45 8.45 42.43 4.04
3683 5275 3.371063 GGTGTCCACGGAGCTCGA 61.371 66.667 7.83 0.00 42.43 4.04
3684 5276 3.343788 GAGGTGTCCACGGAGCTCG 62.344 68.421 7.83 5.83 45.88 5.03
3685 5277 2.276116 TGAGGTGTCCACGGAGCTC 61.276 63.158 4.71 4.71 37.26 4.09
3686 5278 2.203640 TGAGGTGTCCACGGAGCT 60.204 61.111 0.00 0.00 0.00 4.09
3687 5279 2.048127 GTGAGGTGTCCACGGAGC 60.048 66.667 0.00 0.00 0.00 4.70
3688 5280 2.207229 TGGTGAGGTGTCCACGGAG 61.207 63.158 0.00 0.00 35.48 4.63
3689 5281 2.123208 TGGTGAGGTGTCCACGGA 60.123 61.111 0.00 0.00 35.48 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.