AutoCloner

Multiple sequence alignment - TraesCS5D01G242000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G242000	chr5D	100.000	3395	0	0	1	3395	350702669	350706063	0.000000e+00	6270.0
1	TraesCS5D01G242000	chr5D	97.787	949	17	4	2449	3395	250463553	250462607	0.000000e+00	1633.0
2	TraesCS5D01G242000	chr5D	84.158	101	14	2	1306	1405	350676188	350676287	2.790000e-16	97.1
3	TraesCS5D01G242000	chr5D	95.556	45	2	0	67	111	350702680	350702724	4.700000e-09	73.1
4	TraesCS5D01G242000	chr5D	95.556	45	2	0	12	56	350702735	350702779	4.700000e-09	73.1
5	TraesCS5D01G242000	chr5A	94.941	1957	68	13	508	2448	451247492	451249433	0.000000e+00	3037.0
6	TraesCS5D01G242000	chr5A	89.213	343	22	6	171	512	451244501	451244829	6.780000e-112	414.0
7	TraesCS5D01G242000	chr5A	82.558	172	8	1	1	172	451244269	451244418	7.640000e-27	132.0
8	TraesCS5D01G242000	chr5A	79.592	147	25	5	1306	1449	451138358	451138502	2.160000e-17	100.0
9	TraesCS5D01G242000	chr5A	95.745	47	2	0	65	111	451244278	451244324	3.630000e-10	76.8
10	TraesCS5D01G242000	chr5B	94.056	2002	83	18	472	2452	411756878	411758864	0.000000e+00	3005.0
11	TraesCS5D01G242000	chr5B	85.149	101	13	2	1306	1405	411621833	411621932	5.990000e-18	102.0
12	TraesCS5D01G242000	chr5B	87.097	93	6	1	1	87	411756504	411756596	2.160000e-17	100.0
13	TraesCS5D01G242000	chr5B	91.071	56	5	0	114	169	411756601	411756656	3.630000e-10	76.8
14	TraesCS5D01G242000	chr2D	98.419	949	11	4	2449	3395	186114412	186115358	0.000000e+00	1666.0
15	TraesCS5D01G242000	chr2D	82.353	102	14	4	1307	1406	190369898	190369997	6.040000e-13	86.1
16	TraesCS5D01G242000	chrUn	98.211	950	13	4	2449	3395	261887608	261886660	0.000000e+00	1657.0
17	TraesCS5D01G242000	chr4D	98.103	949	15	3	2449	3395	299982102	299983049	0.000000e+00	1650.0
18	TraesCS5D01G242000	chr4D	97.789	950	18	3	2448	3395	105633680	105634628	0.000000e+00	1635.0
19	TraesCS5D01G242000	chr4D	84.536	97	6	4	1306	1396	488514276	488514369	1.680000e-13	87.9
20	TraesCS5D01G242000	chr1D	97.576	949	19	4	2449	3395	139208229	139209175	0.000000e+00	1622.0
21	TraesCS5D01G242000	chr1D	97.471	949	20	4	2449	3395	58715205	58716151	0.000000e+00	1616.0
22	TraesCS5D01G242000	chr1D	97.158	950	23	4	2449	3395	339058989	339059937	0.000000e+00	1602.0
23	TraesCS5D01G242000	chr6D	97.260	949	22	4	2449	3395	38019128	38018182	0.000000e+00	1605.0
24	TraesCS5D01G242000	chr2B	79.375	160	26	7	1309	1463	247560205	247560362	4.630000e-19	106.0
25	TraesCS5D01G242000	chr7A	85.417	96	11	3	1306	1398	125277789	125277884	2.790000e-16	97.1
26	TraesCS5D01G242000	chr2A	77.160	162	27	10	1309	1463	204993359	204993517	6.040000e-13	86.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G242000	chr5D	350702669	350706063	3394	False	2138.733333	6270	97.037333	1	3395	3	chr5D.!!$F2	3394
1	TraesCS5D01G242000	chr5D	250462607	250463553	946	True	1633.000000	1633	97.787000	2449	3395	1	chr5D.!!$R1	946
2	TraesCS5D01G242000	chr5A	451244269	451249433	5164	False	914.950000	3037	90.614250	1	2448	4	chr5A.!!$F2	2447
3	TraesCS5D01G242000	chr5B	411756504	411758864	2360	False	1060.600000	3005	90.741333	1	2452	3	chr5B.!!$F2	2451
4	TraesCS5D01G242000	chr2D	186114412	186115358	946	False	1666.000000	1666	98.419000	2449	3395	1	chr2D.!!$F1	946
5	TraesCS5D01G242000	chrUn	261886660	261887608	948	True	1657.000000	1657	98.211000	2449	3395	1	chrUn.!!$R1	946
6	TraesCS5D01G242000	chr4D	299982102	299983049	947	False	1650.000000	1650	98.103000	2449	3395	1	chr4D.!!$F2	946
7	TraesCS5D01G242000	chr4D	105633680	105634628	948	False	1635.000000	1635	97.789000	2448	3395	1	chr4D.!!$F1	947
8	TraesCS5D01G242000	chr1D	139208229	139209175	946	False	1622.000000	1622	97.576000	2449	3395	1	chr1D.!!$F2	946
9	TraesCS5D01G242000	chr1D	58715205	58716151	946	False	1616.000000	1616	97.471000	2449	3395	1	chr1D.!!$F1	946
10	TraesCS5D01G242000	chr1D	339058989	339059937	948	False	1602.000000	1602	97.158000	2449	3395	1	chr1D.!!$F3	946
11	TraesCS5D01G242000	chr6D	38018182	38019128	946	True	1605.000000	1605	97.260000	2449	3395	1	chr6D.!!$R1	946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
506	598	0.037232	ACAGTACTGCCTTCGGAAGC	60.037	55.0	22.9	8.44	0.0	3.86	F
719	3483	0.244994	GCCAAACTCTCTCTCGCTCA	59.755	55.0	0.0	0.00	0.0	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2316	5107	0.391228	TGTCCTGCTGCACGAAGTTA	59.609	50.000	0.0	0.0	41.61	2.24	R
2669	5467	2.263540	CGGTTTGGGGACGACGAT	59.736	61.111	0.0	0.0	0.00	3.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	65	0.904865	AGGATGGAGCACTTGGACGA	60.905	55.000	0.00	0.00	0.00	4.20
68	75	5.007724	GGAGCACTTGGACGAATTAATAAGG	59.992	44.000	0.00	0.00	0.00	2.69
87	94	3.756117	AGGTGAAAGTTGTGGGAAGATC	58.244	45.455	0.00	0.00	0.00	2.75
88	95	3.138283	AGGTGAAAGTTGTGGGAAGATCA	59.862	43.478	0.00	0.00	0.00	2.92
89	96	3.253432	GGTGAAAGTTGTGGGAAGATCAC	59.747	47.826	0.00	0.00	36.18	3.06
90	97	3.882888	GTGAAAGTTGTGGGAAGATCACA	59.117	43.478	0.00	0.00	42.57	3.58
99	106	4.694760	TGGGAAGATCACACATAGGATG	57.305	45.455	0.00	0.00	0.00	3.51
100	107	3.392285	TGGGAAGATCACACATAGGATGG	59.608	47.826	0.00	0.00	33.60	3.51
101	108	3.648067	GGGAAGATCACACATAGGATGGA	59.352	47.826	0.00	0.00	33.60	3.41
102	109	4.262808	GGGAAGATCACACATAGGATGGAG	60.263	50.000	0.00	0.00	33.60	3.86
103	110	4.314121	GAAGATCACACATAGGATGGAGC	58.686	47.826	0.00	0.00	33.60	4.70
104	111	3.311990	AGATCACACATAGGATGGAGCA	58.688	45.455	0.00	0.00	33.60	4.26
105	112	2.988010	TCACACATAGGATGGAGCAC	57.012	50.000	0.00	0.00	33.60	4.40
106	113	2.470990	TCACACATAGGATGGAGCACT	58.529	47.619	0.00	0.00	33.60	4.40
107	114	2.840038	TCACACATAGGATGGAGCACTT	59.160	45.455	0.00	0.00	33.60	3.16
108	115	2.941064	CACACATAGGATGGAGCACTTG	59.059	50.000	0.00	0.00	33.60	3.16
144	151	0.331278	TGATGGCCGGTTTCATCCTT	59.669	50.000	22.44	6.82	39.06	3.36
156	163	1.977056	TCATCCTTGATCCATGCAGC	58.023	50.000	0.00	0.00	0.00	5.25
231	322	3.884693	TCAACTTGCATCAACATCACACT	59.115	39.130	0.00	0.00	0.00	3.55
255	346	2.480073	CCAACGCTCCATTATGCAAAGG	60.480	50.000	0.00	0.00	0.00	3.11
256	347	1.392589	ACGCTCCATTATGCAAAGGG	58.607	50.000	0.00	0.00	0.00	3.95
257	348	1.340991	ACGCTCCATTATGCAAAGGGT	60.341	47.619	10.61	5.04	0.00	4.34
258	349	2.092646	ACGCTCCATTATGCAAAGGGTA	60.093	45.455	10.61	0.94	32.18	3.69
259	350	2.948979	CGCTCCATTATGCAAAGGGTAA	59.051	45.455	10.61	0.00	0.00	2.85
283	374	3.066621	GCAAGGCATAATTCATTCCGTGA	59.933	43.478	0.00	0.00	34.25	4.35
287	378	3.303132	GGCATAATTCATTCCGTGACGAC	60.303	47.826	6.54	0.00	36.32	4.34
304	395	4.856801	CCTGATGGAACCGGGGCG	62.857	72.222	6.32	0.00	34.57	6.13
334	425	3.198068	CACTACTCATGCCCACACATAC	58.802	50.000	0.00	0.00	0.00	2.39
352	443	1.512926	ACGCTTTGTCTAGTGCCTTG	58.487	50.000	0.00	0.00	0.00	3.61
362	453	3.258622	GTCTAGTGCCTTGGTTCAGTAGT	59.741	47.826	0.00	0.00	37.45	2.73
463	555	4.040829	ACTGTCATGACAACATCTTGAGGA	59.959	41.667	27.63	1.95	40.99	3.71
464	556	4.572909	TGTCATGACAACATCTTGAGGAG	58.427	43.478	26.02	0.00	40.99	3.69
465	557	4.040829	TGTCATGACAACATCTTGAGGAGT	59.959	41.667	26.02	0.00	40.99	3.85
486	578	5.488341	AGTAGTACATTGGATTTCTTGCGT	58.512	37.500	2.52	0.00	0.00	5.24
487	579	6.636705	AGTAGTACATTGGATTTCTTGCGTA	58.363	36.000	2.52	0.00	0.00	4.42
488	580	5.796350	AGTACATTGGATTTCTTGCGTAC	57.204	39.130	0.00	0.00	0.00	3.67
489	581	5.242434	AGTACATTGGATTTCTTGCGTACA	58.758	37.500	0.00	0.00	32.38	2.90
490	582	4.685169	ACATTGGATTTCTTGCGTACAG	57.315	40.909	0.00	0.00	0.00	2.74
502	594	0.801067	GCGTACAGTACTGCCTTCGG	60.801	60.000	22.90	7.56	0.00	4.30
506	598	0.037232	ACAGTACTGCCTTCGGAAGC	60.037	55.000	22.90	8.44	0.00	3.86
551	3310	4.767409	TCCGGACATCGAATATCTGATCTT	59.233	41.667	0.00	0.00	42.43	2.40
563	3325	7.877097	CGAATATCTGATCTTTTCCAGGAATCT	59.123	37.037	1.58	0.00	0.00	2.40
719	3483	0.244994	GCCAAACTCTCTCTCGCTCA	59.755	55.000	0.00	0.00	0.00	4.26
742	3512	2.509336	CCACACACCGAGCGATCC	60.509	66.667	0.00	0.00	0.00	3.36
780	3550	2.685999	GGCCAAGAGCATTCCCCT	59.314	61.111	0.00	0.00	46.50	4.79
810	3580	1.806542	CTTCGTCCACCATTGACAAGG	59.193	52.381	0.00	0.00	32.91	3.61
957	3739	3.599792	CTTGCCGCGCCAACTTGAG	62.600	63.158	0.00	0.00	0.00	3.02
960	3742	1.813753	GCCGCGCCAACTTGAGATA	60.814	57.895	0.00	0.00	0.00	1.98
975	3757	2.159014	TGAGATACCAATTCGTTCGGGG	60.159	50.000	0.00	0.00	0.00	5.73
979	3761	2.112815	CCAATTCGTTCGGGGGCTC	61.113	63.158	0.00	0.00	0.00	4.70
992	3774	3.567797	GGCTCGCTTGATCGTGGC	61.568	66.667	0.00	0.00	40.25	5.01
1266	4048	3.795041	CAGCAGGGGGAGGAGCAG	61.795	72.222	0.00	0.00	0.00	4.24
1592	4383	4.824166	CGTCTACGCCACCGACCG	62.824	72.222	0.00	0.00	38.29	4.79
1622	4413	3.507009	GTCGTCGTCCGGGGAGAG	61.507	72.222	0.00	0.00	37.11	3.20
2053	4844	4.129737	TGCTCGCGGAGGTACTGC	62.130	66.667	6.13	0.00	45.89	4.40
2361	5152	1.142097	GCTCTACGACTTGGAGGCC	59.858	63.158	0.00	0.00	0.00	5.19
2480	5277	1.215382	CACGGCAGATGTCCTCGAA	59.785	57.895	0.00	0.00	0.00	3.71
2526	5323	2.290323	GCAGCTAGGAAACTTGAAGGGA	60.290	50.000	0.00	0.00	43.67	4.20
2641	5439	4.443598	GGTTACAATCTCCAGGGAGCTAAG	60.444	50.000	10.55	3.43	41.71	2.18
2745	5546	2.764547	AGCCCTTAGAGTCCCGGC	60.765	66.667	0.00	0.00	40.03	6.13
2890	5691	4.889995	GCCCATTATCCTGAAACTTAGCTT	59.110	41.667	0.00	0.00	0.00	3.74
3101	5906	2.580276	GGGTAATCCGCCGTGACA	59.420	61.111	0.00	0.00	33.83	3.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	3.873361	TCTTCACACAACTTTCAGCTCAG	59.127	43.478	0.00	0.00	0.00	3.35
58	65	8.485578	TTCCCACAACTTTCACCTTATTAATT	57.514	30.769	0.00	0.00	0.00	1.40
68	75	3.882888	TGTGATCTTCCCACAACTTTCAC	59.117	43.478	0.00	0.00	41.07	3.18
87	94	2.941064	CAAGTGCTCCATCCTATGTGTG	59.059	50.000	0.00	0.00	0.00	3.82
88	95	2.092753	CCAAGTGCTCCATCCTATGTGT	60.093	50.000	0.00	0.00	0.00	3.72
89	96	2.171237	TCCAAGTGCTCCATCCTATGTG	59.829	50.000	0.00	0.00	0.00	3.21
90	97	2.481441	TCCAAGTGCTCCATCCTATGT	58.519	47.619	0.00	0.00	0.00	2.29
91	98	3.784511	ATCCAAGTGCTCCATCCTATG	57.215	47.619	0.00	0.00	0.00	2.23
92	99	3.262915	GCTATCCAAGTGCTCCATCCTAT	59.737	47.826	0.00	0.00	0.00	2.57
93	100	2.634940	GCTATCCAAGTGCTCCATCCTA	59.365	50.000	0.00	0.00	0.00	2.94
94	101	1.419387	GCTATCCAAGTGCTCCATCCT	59.581	52.381	0.00	0.00	0.00	3.24
95	102	1.419387	AGCTATCCAAGTGCTCCATCC	59.581	52.381	0.00	0.00	30.41	3.51
96	103	2.926778	AGCTATCCAAGTGCTCCATC	57.073	50.000	0.00	0.00	30.41	3.51
97	104	2.038295	GCTAGCTATCCAAGTGCTCCAT	59.962	50.000	7.70	0.00	38.15	3.41
98	105	1.414181	GCTAGCTATCCAAGTGCTCCA	59.586	52.381	7.70	0.00	38.15	3.86
99	106	1.691434	AGCTAGCTATCCAAGTGCTCC	59.309	52.381	17.69	0.00	38.15	4.70
100	107	2.363680	TCAGCTAGCTATCCAAGTGCTC	59.636	50.000	18.86	0.00	38.15	4.26
101	108	2.392662	TCAGCTAGCTATCCAAGTGCT	58.607	47.619	18.86	0.00	40.43	4.40
102	109	2.898729	TCAGCTAGCTATCCAAGTGC	57.101	50.000	18.86	0.00	0.00	4.40
103	110	3.065655	GCATCAGCTAGCTATCCAAGTG	58.934	50.000	18.86	9.40	37.91	3.16
104	111	3.399440	GCATCAGCTAGCTATCCAAGT	57.601	47.619	18.86	0.00	37.91	3.16
144	151	0.461870	GTACACGGCTGCATGGATCA	60.462	55.000	0.50	0.00	0.00	2.92
172	179	4.142271	GGATGGTCAAACACAGAAAACACA	60.142	41.667	0.00	0.00	0.00	3.72
255	346	5.509670	GGAATGAATTATGCCTTGCCTTACC	60.510	44.000	0.00	0.00	30.86	2.85
256	347	5.532557	GGAATGAATTATGCCTTGCCTTAC	58.467	41.667	0.00	0.00	30.86	2.34
257	348	4.278170	CGGAATGAATTATGCCTTGCCTTA	59.722	41.667	0.00	0.00	31.42	2.69
258	349	3.068590	CGGAATGAATTATGCCTTGCCTT	59.931	43.478	0.00	0.00	31.42	4.35
259	350	2.624838	CGGAATGAATTATGCCTTGCCT	59.375	45.455	0.00	0.00	31.42	4.75
283	374	2.656069	CCCGGTTCCATCAGGTCGT	61.656	63.158	0.00	0.00	35.89	4.34
287	378	4.856801	CGCCCCGGTTCCATCAGG	62.857	72.222	0.00	0.00	0.00	3.86
304	395	0.807667	CATGAGTAGTGCAGGACGCC	60.808	60.000	0.00	0.00	41.33	5.68
334	425	0.798776	CCAAGGCACTAGACAAAGCG	59.201	55.000	0.00	0.00	38.49	4.68
352	443	1.270839	TGGCTTGCAGACTACTGAACC	60.271	52.381	0.00	0.00	46.03	3.62
362	453	1.135527	GCATTATGCTTGGCTTGCAGA	59.864	47.619	10.27	3.76	44.04	4.26
452	544	5.958380	TCCAATGTACTACTCCTCAAGATGT	59.042	40.000	0.00	0.00	0.00	3.06
453	545	6.471233	TCCAATGTACTACTCCTCAAGATG	57.529	41.667	0.00	0.00	0.00	2.90
463	555	5.488341	ACGCAAGAAATCCAATGTACTACT	58.512	37.500	0.00	0.00	43.62	2.57
464	556	5.796350	ACGCAAGAAATCCAATGTACTAC	57.204	39.130	0.00	0.00	43.62	2.73
465	557	6.399743	TGTACGCAAGAAATCCAATGTACTA	58.600	36.000	0.00	0.00	43.62	1.82
502	594	9.699703	ATCTAATTCGAACCTAATCTAAGCTTC	57.300	33.333	0.00	0.00	0.00	3.86
506	598	7.755822	CCGGATCTAATTCGAACCTAATCTAAG	59.244	40.741	0.00	0.00	0.00	2.18
596	3358	1.873591	CATAGATAAGGTTGCCGGTGC	59.126	52.381	1.90	0.00	38.26	5.01
719	3483	3.138625	CTCGGTGTGTGGAGGTGT	58.861	61.111	0.00	0.00	0.00	4.16
780	3550	1.541670	GGTGGACGAAGCACCAAAGTA	60.542	52.381	0.00	0.00	39.85	2.24
810	3580	1.202256	CGGGCGGCTTTAGAAAATTCC	60.202	52.381	9.56	0.00	0.00	3.01
949	3731	5.445939	CCGAACGAATTGGTATCTCAAGTTG	60.446	44.000	0.00	0.00	33.70	3.16
954	3736	2.159014	CCCCGAACGAATTGGTATCTCA	60.159	50.000	0.00	0.00	0.00	3.27
957	3739	1.589803	CCCCCGAACGAATTGGTATC	58.410	55.000	0.00	0.00	0.00	2.24
960	3742	2.360726	GCCCCCGAACGAATTGGT	60.361	61.111	0.00	0.00	0.00	3.67
975	3757	3.567797	GCCACGATCAAGCGAGCC	61.568	66.667	0.00	0.00	34.83	4.70
1252	4034	3.795041	CTGCTGCTCCTCCCCCTG	61.795	72.222	0.00	0.00	0.00	4.45
1255	4037	4.486503	CTGCTGCTGCTCCTCCCC	62.487	72.222	17.00	0.00	40.48	4.81
1258	4040	4.098722	AGGCTGCTGCTGCTCCTC	62.099	66.667	26.79	13.07	38.00	3.71
1259	4041	4.411981	CAGGCTGCTGCTGCTCCT	62.412	66.667	26.79	18.10	41.14	3.69
1592	4383	2.717809	GACGACGCGAAGGTGAAGC	61.718	63.158	15.93	0.00	0.00	3.86
1989	4780	2.022902	CCGGAGTCGACGATCACG	59.977	66.667	10.46	11.07	45.75	4.35
2316	5107	0.391228	TGTCCTGCTGCACGAAGTTA	59.609	50.000	0.00	0.00	41.61	2.24
2352	5143	2.685380	AGGGTCTCGGCCTCCAAG	60.685	66.667	0.00	0.00	0.00	3.61
2361	5152	2.504244	GCGAACGACAGGGTCTCG	60.504	66.667	0.00	4.31	37.17	4.04
2415	5206	7.545965	GCTTTGATACACATATATAGCTCCGTT	59.454	37.037	0.00	0.00	0.00	4.44
2418	5209	8.253810	TCTGCTTTGATACACATATATAGCTCC	58.746	37.037	0.00	0.00	0.00	4.70
2419	5210	9.814899	ATCTGCTTTGATACACATATATAGCTC	57.185	33.333	0.00	0.00	0.00	4.09
2420	5211	9.597170	CATCTGCTTTGATACACATATATAGCT	57.403	33.333	0.00	0.00	0.00	3.32
2421	5212	9.376075	ACATCTGCTTTGATACACATATATAGC	57.624	33.333	0.00	0.00	0.00	2.97
2480	5277	2.367486	GCTCCACGACTAAGTCCTAGT	58.633	52.381	0.00	0.00	43.95	2.57
2526	5323	2.365582	GTGTTCCTTGTCCCGCATAAT	58.634	47.619	0.00	0.00	0.00	1.28
2669	5467	2.263540	CGGTTTGGGGACGACGAT	59.736	61.111	0.00	0.00	0.00	3.73
2745	5546	0.105039	GGACACTCTTATGAGCCGGG	59.895	60.000	2.18	0.00	43.85	5.73
2890	5691	2.759355	AGGATCATTACCAGAACCCGA	58.241	47.619	0.00	0.00	0.00	5.14
3101	5906	3.033659	ACGGACTTAGTGGAGGATGAT	57.966	47.619	0.00	0.00	0.00	2.45
3263	6068	0.603569	GTGAAGAAGAGAGTGCCGGA	59.396	55.000	5.05	0.00	0.00	5.14

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.