Multiple sequence alignment - TraesCS5D01G241100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G241100 chr5D 100.000 3334 0 0 1 3334 350219088 350222421 0.000000e+00 6157.0
1 TraesCS5D01G241100 chr5D 91.682 1070 62 19 1130 2193 349981730 349980682 0.000000e+00 1458.0
2 TraesCS5D01G241100 chr5A 87.980 2188 130 56 467 2584 450540223 450542347 0.000000e+00 2460.0
3 TraesCS5D01G241100 chr5A 91.854 1068 65 16 1130 2193 450474859 450473810 0.000000e+00 1471.0
4 TraesCS5D01G241100 chr5A 81.100 836 64 39 521 1309 450507850 450508638 1.720000e-162 582.0
5 TraesCS5D01G241100 chr5A 93.069 303 20 1 97 399 366030805 366030504 3.050000e-120 442.0
6 TraesCS5D01G241100 chr5A 92.787 305 20 1 95 399 79136770 79137072 1.100000e-119 440.0
7 TraesCS5D01G241100 chr5A 92.787 305 20 1 95 399 630123778 630124080 1.100000e-119 440.0
8 TraesCS5D01G241100 chr5A 86.010 193 13 5 2575 2763 450542370 450542552 9.440000e-46 195.0
9 TraesCS5D01G241100 chr5A 92.308 104 2 3 2 99 450503755 450503858 3.470000e-30 143.0
10 TraesCS5D01G241100 chr5B 90.192 1927 62 38 651 2523 410721936 410723789 0.000000e+00 2394.0
11 TraesCS5D01G241100 chr5B 90.335 1076 81 17 1130 2196 410598862 410597801 0.000000e+00 1389.0
12 TraesCS5D01G241100 chr5B 81.514 568 84 18 2776 3334 410727885 410728440 6.560000e-122 448.0
13 TraesCS5D01G241100 chr5B 86.099 223 17 7 416 638 410694331 410694539 9.310000e-56 228.0
14 TraesCS5D01G241100 chr6A 82.645 605 79 16 1568 2150 559132737 559132137 2.290000e-141 512.0
15 TraesCS5D01G241100 chr6A 82.314 605 81 16 1568 2150 559002791 559002191 4.970000e-138 501.0
16 TraesCS5D01G241100 chr6B 82.119 604 76 21 1575 2150 624496390 624495791 3.870000e-134 488.0
17 TraesCS5D01G241100 chr6D 81.833 611 79 21 1568 2150 414256791 414256185 5.000000e-133 484.0
18 TraesCS5D01G241100 chr4A 92.810 306 21 1 94 399 478199737 478200041 3.050000e-120 442.0
19 TraesCS5D01G241100 chr4A 84.507 71 6 3 2994 3064 278367531 278367466 7.720000e-07 65.8
20 TraesCS5D01G241100 chr7A 92.258 310 21 3 89 398 595075741 595075435 1.420000e-118 436.0
21 TraesCS5D01G241100 chr2D 92.739 303 20 1 97 399 366061126 366061426 1.420000e-118 436.0
22 TraesCS5D01G241100 chr1A 92.484 306 21 1 94 399 354954298 354954601 1.420000e-118 436.0
23 TraesCS5D01G241100 chr3A 91.961 311 23 2 89 399 291788330 291788638 5.110000e-118 435.0
24 TraesCS5D01G241100 chr2A 92.208 308 23 1 93 399 55742341 55742034 5.110000e-118 435.0
25 TraesCS5D01G241100 chr4D 90.141 71 4 2 2994 3064 270645885 270645952 4.580000e-14 89.8
26 TraesCS5D01G241100 chr4B 90.000 70 4 2 2995 3064 237934737 237934671 1.650000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G241100 chr5D 350219088 350222421 3333 False 6157.0 6157 100.000 1 3334 1 chr5D.!!$F1 3333
1 TraesCS5D01G241100 chr5D 349980682 349981730 1048 True 1458.0 1458 91.682 1130 2193 1 chr5D.!!$R1 1063
2 TraesCS5D01G241100 chr5A 450473810 450474859 1049 True 1471.0 1471 91.854 1130 2193 1 chr5A.!!$R2 1063
3 TraesCS5D01G241100 chr5A 450540223 450542552 2329 False 1327.5 2460 86.995 467 2763 2 chr5A.!!$F4 2296
4 TraesCS5D01G241100 chr5A 450503755 450508638 4883 False 362.5 582 86.704 2 1309 2 chr5A.!!$F3 1307
5 TraesCS5D01G241100 chr5B 410721936 410723789 1853 False 2394.0 2394 90.192 651 2523 1 chr5B.!!$F2 1872
6 TraesCS5D01G241100 chr5B 410597801 410598862 1061 True 1389.0 1389 90.335 1130 2196 1 chr5B.!!$R1 1066
7 TraesCS5D01G241100 chr5B 410727885 410728440 555 False 448.0 448 81.514 2776 3334 1 chr5B.!!$F3 558
8 TraesCS5D01G241100 chr6A 559132137 559132737 600 True 512.0 512 82.645 1568 2150 1 chr6A.!!$R2 582
9 TraesCS5D01G241100 chr6A 559002191 559002791 600 True 501.0 501 82.314 1568 2150 1 chr6A.!!$R1 582
10 TraesCS5D01G241100 chr6B 624495791 624496390 599 True 488.0 488 82.119 1575 2150 1 chr6B.!!$R1 575
11 TraesCS5D01G241100 chr6D 414256185 414256791 606 True 484.0 484 81.833 1568 2150 1 chr6D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 407 0.106419 TTCCTCCAAACCAAAGGCGT 60.106 50.0 0.00 0.00 0.00 5.68 F
459 465 0.176680 ACGCATGCTAGCTTGCTAGT 59.823 50.0 37.48 29.81 42.57 2.57 F
648 4561 0.250727 TGGAAAACCAAGAGCGGGAG 60.251 55.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 6379 1.148048 TAGCACACAAGCCAGCACA 59.852 52.632 0.00 0.0 34.23 4.57 R
2327 6380 1.576421 GTAGCACACAAGCCAGCAC 59.424 57.895 0.00 0.0 34.23 4.40 R
2617 6713 0.389025 CCGGGAAATATTGGCAAGGC 59.611 55.000 5.96 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 1.245376 TATGGGCGACGGCGATCATA 61.245 55.000 18.90 18.42 41.24 2.15
90 96 8.893563 AATTAATCTACAATGGGTCAAGGAAA 57.106 30.769 0.00 0.00 0.00 3.13
95 101 4.112634 ACAATGGGTCAAGGAAAAGCTA 57.887 40.909 0.00 0.00 0.00 3.32
96 102 4.479158 ACAATGGGTCAAGGAAAAGCTAA 58.521 39.130 0.00 0.00 0.00 3.09
97 103 4.524328 ACAATGGGTCAAGGAAAAGCTAAG 59.476 41.667 0.00 0.00 0.00 2.18
98 104 3.154827 TGGGTCAAGGAAAAGCTAAGG 57.845 47.619 0.00 0.00 0.00 2.69
99 105 1.819288 GGGTCAAGGAAAAGCTAAGGC 59.181 52.381 0.00 0.00 39.06 4.35
100 106 1.819288 GGTCAAGGAAAAGCTAAGGCC 59.181 52.381 0.00 0.00 39.73 5.19
101 107 2.555448 GGTCAAGGAAAAGCTAAGGCCT 60.555 50.000 0.00 0.00 39.73 5.19
102 108 2.750166 GTCAAGGAAAAGCTAAGGCCTC 59.250 50.000 5.23 0.00 39.73 4.70
103 109 2.644798 TCAAGGAAAAGCTAAGGCCTCT 59.355 45.455 5.23 0.00 39.73 3.69
104 110 3.074538 TCAAGGAAAAGCTAAGGCCTCTT 59.925 43.478 5.23 1.64 39.73 2.85
105 111 3.816398 AGGAAAAGCTAAGGCCTCTTT 57.184 42.857 5.23 9.13 39.73 2.52
106 112 4.119556 AGGAAAAGCTAAGGCCTCTTTT 57.880 40.909 23.66 23.66 41.20 2.27
107 113 3.829026 AGGAAAAGCTAAGGCCTCTTTTG 59.171 43.478 26.83 7.55 39.34 2.44
108 114 3.056536 GGAAAAGCTAAGGCCTCTTTTGG 60.057 47.826 26.83 8.09 39.34 3.28
121 127 5.815233 CCTCTTTTGGCTCATAGGATAGA 57.185 43.478 0.00 0.00 0.00 1.98
122 128 6.179906 CCTCTTTTGGCTCATAGGATAGAA 57.820 41.667 0.00 0.00 0.00 2.10
123 129 6.777782 CCTCTTTTGGCTCATAGGATAGAAT 58.222 40.000 0.00 0.00 0.00 2.40
124 130 7.230027 CCTCTTTTGGCTCATAGGATAGAATT 58.770 38.462 0.00 0.00 0.00 2.17
125 131 8.378565 CCTCTTTTGGCTCATAGGATAGAATTA 58.621 37.037 0.00 0.00 0.00 1.40
126 132 9.213799 CTCTTTTGGCTCATAGGATAGAATTAC 57.786 37.037 0.00 0.00 0.00 1.89
127 133 8.157476 TCTTTTGGCTCATAGGATAGAATTACC 58.843 37.037 0.00 0.00 0.00 2.85
128 134 5.661056 TGGCTCATAGGATAGAATTACCG 57.339 43.478 0.00 0.00 0.00 4.02
129 135 5.084519 TGGCTCATAGGATAGAATTACCGT 58.915 41.667 0.00 0.00 0.00 4.83
130 136 6.250711 TGGCTCATAGGATAGAATTACCGTA 58.749 40.000 0.00 0.00 0.00 4.02
131 137 6.377429 TGGCTCATAGGATAGAATTACCGTAG 59.623 42.308 0.00 0.00 0.00 3.51
152 158 8.726870 CGTAGGAATAGGAATTTTGTAGGAAA 57.273 34.615 0.00 0.00 0.00 3.13
153 159 9.338622 CGTAGGAATAGGAATTTTGTAGGAAAT 57.661 33.333 0.00 0.00 0.00 2.17
156 162 9.413734 AGGAATAGGAATTTTGTAGGAAATGAG 57.586 33.333 0.00 0.00 30.06 2.90
157 163 9.408648 GGAATAGGAATTTTGTAGGAAATGAGA 57.591 33.333 0.00 0.00 30.06 3.27
202 208 9.619316 CTATGAGTAGGAATAAGAAACGAGATG 57.381 37.037 0.00 0.00 0.00 2.90
203 209 7.406031 TGAGTAGGAATAAGAAACGAGATGT 57.594 36.000 0.00 0.00 0.00 3.06
204 210 7.481642 TGAGTAGGAATAAGAAACGAGATGTC 58.518 38.462 0.00 0.00 0.00 3.06
205 211 7.122204 TGAGTAGGAATAAGAAACGAGATGTCA 59.878 37.037 0.00 0.00 0.00 3.58
206 212 8.012957 AGTAGGAATAAGAAACGAGATGTCAT 57.987 34.615 0.00 0.00 0.00 3.06
207 213 8.478877 AGTAGGAATAAGAAACGAGATGTCATT 58.521 33.333 0.00 0.00 0.00 2.57
208 214 9.099454 GTAGGAATAAGAAACGAGATGTCATTT 57.901 33.333 0.00 0.00 0.00 2.32
209 215 7.978982 AGGAATAAGAAACGAGATGTCATTTG 58.021 34.615 0.00 0.00 0.00 2.32
210 216 7.066284 AGGAATAAGAAACGAGATGTCATTTGG 59.934 37.037 0.00 0.00 0.00 3.28
211 217 7.148239 GGAATAAGAAACGAGATGTCATTTGGT 60.148 37.037 0.00 0.00 0.00 3.67
212 218 7.687941 ATAAGAAACGAGATGTCATTTGGTT 57.312 32.000 0.00 0.00 0.00 3.67
213 219 5.362556 AGAAACGAGATGTCATTTGGTTG 57.637 39.130 4.80 0.00 0.00 3.77
214 220 5.063204 AGAAACGAGATGTCATTTGGTTGA 58.937 37.500 4.80 0.00 0.00 3.18
215 221 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
224 230 5.452078 GTCATTTGGTTGACATCAAAGGA 57.548 39.130 12.16 12.16 44.38 3.36
225 231 5.841810 GTCATTTGGTTGACATCAAAGGAA 58.158 37.500 15.68 4.09 42.54 3.36
226 232 6.458210 GTCATTTGGTTGACATCAAAGGAAT 58.542 36.000 15.68 0.00 42.54 3.01
227 233 6.930722 GTCATTTGGTTGACATCAAAGGAATT 59.069 34.615 15.68 0.00 42.54 2.17
228 234 7.442062 GTCATTTGGTTGACATCAAAGGAATTT 59.558 33.333 15.68 0.00 42.54 1.82
229 235 7.992033 TCATTTGGTTGACATCAAAGGAATTTT 59.008 29.630 13.20 0.00 39.59 1.82
230 236 8.623030 CATTTGGTTGACATCAAAGGAATTTTT 58.377 29.630 9.43 0.00 36.97 1.94
327 333 8.981659 AGAAATCCATTCTTATAAACCAAAGGG 58.018 33.333 0.00 0.00 46.39 3.95
328 334 6.731292 ATCCATTCTTATAAACCAAAGGGC 57.269 37.500 0.00 0.00 37.90 5.19
329 335 5.837829 TCCATTCTTATAAACCAAAGGGCT 58.162 37.500 0.00 0.00 37.90 5.19
330 336 5.891551 TCCATTCTTATAAACCAAAGGGCTC 59.108 40.000 0.00 0.00 37.90 4.70
331 337 5.893824 CCATTCTTATAAACCAAAGGGCTCT 59.106 40.000 0.00 0.00 37.90 4.09
332 338 7.060421 CCATTCTTATAAACCAAAGGGCTCTA 58.940 38.462 0.00 0.00 37.90 2.43
333 339 7.559897 CCATTCTTATAAACCAAAGGGCTCTAA 59.440 37.037 0.00 0.00 37.90 2.10
334 340 8.966868 CATTCTTATAAACCAAAGGGCTCTAAA 58.033 33.333 0.00 0.00 37.90 1.85
335 341 8.943594 TTCTTATAAACCAAAGGGCTCTAAAA 57.056 30.769 0.00 0.00 37.90 1.52
336 342 8.575649 TCTTATAAACCAAAGGGCTCTAAAAG 57.424 34.615 0.00 0.00 37.90 2.27
337 343 8.387813 TCTTATAAACCAAAGGGCTCTAAAAGA 58.612 33.333 0.00 0.00 37.90 2.52
338 344 8.943594 TTATAAACCAAAGGGCTCTAAAAGAA 57.056 30.769 0.00 0.00 37.90 2.52
339 345 7.849322 ATAAACCAAAGGGCTCTAAAAGAAA 57.151 32.000 0.00 0.00 37.90 2.52
340 346 6.553953 AAACCAAAGGGCTCTAAAAGAAAA 57.446 33.333 0.00 0.00 37.90 2.29
341 347 6.553953 AACCAAAGGGCTCTAAAAGAAAAA 57.446 33.333 0.00 0.00 37.90 1.94
386 392 8.805145 TCCTCTAGAATTCCTATGAAATTCCT 57.195 34.615 0.65 0.00 33.32 3.36
387 393 8.875168 TCCTCTAGAATTCCTATGAAATTCCTC 58.125 37.037 0.65 0.00 33.32 3.71
388 394 8.100164 CCTCTAGAATTCCTATGAAATTCCTCC 58.900 40.741 0.65 0.00 33.32 4.30
389 395 8.567198 TCTAGAATTCCTATGAAATTCCTCCA 57.433 34.615 0.65 0.00 33.32 3.86
390 396 9.003145 TCTAGAATTCCTATGAAATTCCTCCAA 57.997 33.333 0.65 0.00 33.32 3.53
391 397 9.632638 CTAGAATTCCTATGAAATTCCTCCAAA 57.367 33.333 0.65 0.00 33.32 3.28
392 398 8.298729 AGAATTCCTATGAAATTCCTCCAAAC 57.701 34.615 0.65 0.00 33.32 2.93
393 399 7.343057 AGAATTCCTATGAAATTCCTCCAAACC 59.657 37.037 0.65 0.00 33.32 3.27
394 400 5.528600 TCCTATGAAATTCCTCCAAACCA 57.471 39.130 0.00 0.00 0.00 3.67
395 401 5.898120 TCCTATGAAATTCCTCCAAACCAA 58.102 37.500 0.00 0.00 0.00 3.67
396 402 6.318913 TCCTATGAAATTCCTCCAAACCAAA 58.681 36.000 0.00 0.00 0.00 3.28
397 403 6.437162 TCCTATGAAATTCCTCCAAACCAAAG 59.563 38.462 0.00 0.00 0.00 2.77
398 404 4.953940 TGAAATTCCTCCAAACCAAAGG 57.046 40.909 0.00 0.00 0.00 3.11
399 405 3.070878 TGAAATTCCTCCAAACCAAAGGC 59.929 43.478 0.00 0.00 0.00 4.35
400 406 1.256812 ATTCCTCCAAACCAAAGGCG 58.743 50.000 0.00 0.00 0.00 5.52
401 407 0.106419 TTCCTCCAAACCAAAGGCGT 60.106 50.000 0.00 0.00 0.00 5.68
402 408 0.766131 TCCTCCAAACCAAAGGCGTA 59.234 50.000 0.00 0.00 0.00 4.42
414 420 3.274067 GGCGTAAAGGTTGCCCTG 58.726 61.111 0.00 0.00 41.56 4.45
418 424 1.305930 CGTAAAGGTTGCCCTGGCTC 61.306 60.000 9.97 2.80 41.56 4.70
419 425 1.002624 TAAAGGTTGCCCTGGCTCG 60.003 57.895 9.97 0.00 41.56 5.03
440 446 0.455410 GCATGCATTTGCCGACCTAA 59.545 50.000 14.21 0.00 41.18 2.69
441 447 1.798813 GCATGCATTTGCCGACCTAAC 60.799 52.381 14.21 0.00 41.18 2.34
442 448 0.732571 ATGCATTTGCCGACCTAACG 59.267 50.000 0.00 0.00 41.18 3.18
443 449 1.226295 GCATTTGCCGACCTAACGC 60.226 57.895 0.00 0.00 34.31 4.84
444 450 1.917782 GCATTTGCCGACCTAACGCA 61.918 55.000 0.00 0.00 34.31 5.24
445 451 0.732571 CATTTGCCGACCTAACGCAT 59.267 50.000 0.00 0.00 0.00 4.73
446 452 0.732571 ATTTGCCGACCTAACGCATG 59.267 50.000 0.00 0.00 0.00 4.06
450 456 1.215655 GCCGACCTAACGCATGCTAG 61.216 60.000 17.13 11.36 0.00 3.42
451 457 1.215655 CCGACCTAACGCATGCTAGC 61.216 60.000 17.13 8.10 0.00 3.42
452 458 0.249073 CGACCTAACGCATGCTAGCT 60.249 55.000 17.13 0.00 0.00 3.32
453 459 1.802880 CGACCTAACGCATGCTAGCTT 60.803 52.381 17.13 6.81 0.00 3.74
454 460 1.594862 GACCTAACGCATGCTAGCTTG 59.405 52.381 22.78 22.78 0.00 4.01
455 461 0.305922 CCTAACGCATGCTAGCTTGC 59.694 55.000 34.23 34.23 41.71 4.01
456 462 1.293924 CTAACGCATGCTAGCTTGCT 58.706 50.000 37.48 27.87 42.57 3.91
457 463 2.473816 CTAACGCATGCTAGCTTGCTA 58.526 47.619 37.48 27.59 42.57 3.49
458 464 1.293924 AACGCATGCTAGCTTGCTAG 58.706 50.000 37.48 29.30 42.57 3.42
459 465 0.176680 ACGCATGCTAGCTTGCTAGT 59.823 50.000 37.48 29.81 42.57 2.57
460 466 1.409064 ACGCATGCTAGCTTGCTAGTA 59.591 47.619 37.48 22.24 42.57 1.82
462 468 2.139118 GCATGCTAGCTTGCTAGTACC 58.861 52.381 35.69 14.76 41.83 3.34
463 469 2.483714 GCATGCTAGCTTGCTAGTACCA 60.484 50.000 35.69 17.04 41.83 3.25
464 470 3.388308 CATGCTAGCTTGCTAGTACCAG 58.612 50.000 24.82 13.77 0.00 4.00
487 4132 1.001406 GCTTATCCTCCCATCGACTGG 59.999 57.143 6.85 6.85 45.51 4.00
494 4139 2.213499 CTCCCATCGACTGGCATTAAC 58.787 52.381 8.01 0.00 44.46 2.01
619 4504 2.476051 CGACATGCACGTGCTTCC 59.524 61.111 37.59 23.54 42.66 3.46
626 4514 0.953471 TGCACGTGCTTCCACATACC 60.953 55.000 37.59 8.21 42.17 2.73
627 4515 0.953471 GCACGTGCTTCCACATACCA 60.953 55.000 32.55 0.00 42.17 3.25
628 4516 0.796312 CACGTGCTTCCACATACCAC 59.204 55.000 0.82 0.00 42.17 4.16
629 4517 0.685097 ACGTGCTTCCACATACCACT 59.315 50.000 0.00 0.00 42.17 4.00
630 4518 1.078709 CGTGCTTCCACATACCACTG 58.921 55.000 0.00 0.00 42.17 3.66
631 4519 1.453155 GTGCTTCCACATACCACTGG 58.547 55.000 0.00 0.00 41.67 4.00
632 4520 1.003118 GTGCTTCCACATACCACTGGA 59.997 52.381 0.71 0.00 41.67 3.86
633 4521 1.702401 TGCTTCCACATACCACTGGAA 59.298 47.619 0.71 0.00 43.05 3.53
634 4522 2.107378 TGCTTCCACATACCACTGGAAA 59.893 45.455 0.71 0.00 44.29 3.13
635 4523 3.153919 GCTTCCACATACCACTGGAAAA 58.846 45.455 0.71 0.00 44.29 2.29
636 4524 3.057526 GCTTCCACATACCACTGGAAAAC 60.058 47.826 0.71 0.00 44.29 2.43
637 4525 3.149005 TCCACATACCACTGGAAAACC 57.851 47.619 0.71 0.00 33.39 3.27
644 4554 0.593128 CCACTGGAAAACCAAGAGCG 59.407 55.000 0.00 0.00 0.00 5.03
648 4561 0.250727 TGGAAAACCAAGAGCGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
756 4683 2.264794 GTCCGTGGTCGCTGGATT 59.735 61.111 0.00 0.00 33.63 3.01
823 4750 1.002134 CGGATATCCCACATGGCCC 60.002 63.158 16.36 0.00 34.14 5.80
892 4824 2.919229 CAGGTTACAGTTACGGTTAGCG 59.081 50.000 1.14 1.14 0.00 4.26
941 4879 3.245284 GCGCATCAATACGTACACTTGAT 59.755 43.478 14.33 14.33 39.55 2.57
1219 5182 2.825836 GCATGCGAGAACTGGGGG 60.826 66.667 0.00 0.00 0.00 5.40
1236 5199 2.310647 GGGGGTTCTTCCAGGTGAATAA 59.689 50.000 1.96 0.00 38.11 1.40
1324 5310 2.555325 TGATTTTGCTCTGCTCTTGTGG 59.445 45.455 0.00 0.00 0.00 4.17
1327 5313 1.168407 TTGCTCTGCTCTTGTGGTGC 61.168 55.000 0.00 0.00 35.27 5.01
1333 5319 2.661537 CTCTTGTGGTGCGTGCGA 60.662 61.111 0.00 0.00 0.00 5.10
1334 5320 2.029288 CTCTTGTGGTGCGTGCGAT 61.029 57.895 0.00 0.00 0.00 4.58
1366 5365 2.187946 CTGGACCACGGCATCTCC 59.812 66.667 0.00 0.00 0.00 3.71
2326 6379 0.743345 GGTGCCGAATAAACGAGCCT 60.743 55.000 0.00 0.00 35.09 4.58
2327 6380 0.373716 GTGCCGAATAAACGAGCCTG 59.626 55.000 0.00 0.00 35.09 4.85
2359 6415 1.200484 GTGCTACGCCTAGCTAGGATC 59.800 57.143 38.74 22.75 46.63 3.36
2366 6422 3.327172 ACGCCTAGCTAGGATCTGTAGTA 59.673 47.826 38.74 0.00 46.63 1.82
2367 6423 4.202440 ACGCCTAGCTAGGATCTGTAGTAA 60.202 45.833 38.74 0.00 46.63 2.24
2368 6424 4.393680 CGCCTAGCTAGGATCTGTAGTAAG 59.606 50.000 38.74 11.59 46.63 2.34
2369 6425 5.318630 GCCTAGCTAGGATCTGTAGTAAGT 58.681 45.833 38.74 0.00 46.63 2.24
2467 6523 2.343758 CCAGGGGCATCGTATCGG 59.656 66.667 0.00 0.00 0.00 4.18
2484 6540 8.570096 TCGTATCGGTTGTCTCTTTTAATATG 57.430 34.615 0.00 0.00 0.00 1.78
2485 6541 8.192774 TCGTATCGGTTGTCTCTTTTAATATGT 58.807 33.333 0.00 0.00 0.00 2.29
2486 6542 9.454585 CGTATCGGTTGTCTCTTTTAATATGTA 57.545 33.333 0.00 0.00 0.00 2.29
2519 6575 3.444388 CCTCCTTGTGTGAGAGTACTACC 59.556 52.174 0.00 0.00 31.26 3.18
2527 6583 4.575645 GTGTGAGAGTACTACCGCTTCTAT 59.424 45.833 0.00 0.00 0.00 1.98
2528 6584 4.575236 TGTGAGAGTACTACCGCTTCTATG 59.425 45.833 0.00 0.00 0.00 2.23
2530 6586 5.049954 GTGAGAGTACTACCGCTTCTATGAG 60.050 48.000 0.00 0.00 0.00 2.90
2533 6589 4.525024 AGTACTACCGCTTCTATGAGTGT 58.475 43.478 0.00 0.00 0.00 3.55
2534 6590 4.948621 AGTACTACCGCTTCTATGAGTGTT 59.051 41.667 0.00 0.00 0.00 3.32
2535 6591 4.111375 ACTACCGCTTCTATGAGTGTTG 57.889 45.455 0.00 0.00 0.00 3.33
2536 6592 1.726853 ACCGCTTCTATGAGTGTTGC 58.273 50.000 0.00 0.00 0.00 4.17
2537 6593 1.009829 CCGCTTCTATGAGTGTTGCC 58.990 55.000 0.00 0.00 0.00 4.52
2538 6594 1.675714 CCGCTTCTATGAGTGTTGCCA 60.676 52.381 0.00 0.00 0.00 4.92
2539 6595 2.076100 CGCTTCTATGAGTGTTGCCAA 58.924 47.619 0.00 0.00 0.00 4.52
2540 6596 2.159653 CGCTTCTATGAGTGTTGCCAAC 60.160 50.000 0.00 0.00 0.00 3.77
2541 6597 3.077359 GCTTCTATGAGTGTTGCCAACT 58.923 45.455 9.30 0.00 0.00 3.16
2542 6598 3.503748 GCTTCTATGAGTGTTGCCAACTT 59.496 43.478 9.30 0.00 0.00 2.66
2543 6599 4.614535 GCTTCTATGAGTGTTGCCAACTTG 60.615 45.833 9.30 0.00 0.00 3.16
2544 6600 2.813754 TCTATGAGTGTTGCCAACTTGC 59.186 45.455 9.30 0.00 0.00 4.01
2547 6610 0.249031 GAGTGTTGCCAACTTGCCAC 60.249 55.000 9.30 0.00 0.00 5.01
2563 6626 2.668212 ACCATCACGCCAACACGG 60.668 61.111 0.00 0.00 37.37 4.94
2573 6636 3.725459 CAACACGGCAGCATCGCA 61.725 61.111 0.00 0.00 0.00 5.10
2584 6647 2.699809 CATCGCAGCGAGCTGAAC 59.300 61.111 27.09 10.48 46.30 3.18
2594 6690 0.957395 CGAGCTGAACTTGCCACCAT 60.957 55.000 0.00 0.00 0.00 3.55
2607 6703 2.258755 GCCACCATTTGTGTTATTCGC 58.741 47.619 0.00 0.00 43.85 4.70
2609 6705 1.910819 CACCATTTGTGTTATTCGCGC 59.089 47.619 0.00 0.00 40.26 6.86
2611 6707 2.176369 CCATTTGTGTTATTCGCGCAG 58.824 47.619 8.75 0.00 0.00 5.18
2613 6709 3.487536 CATTTGTGTTATTCGCGCAGAA 58.512 40.909 8.75 12.69 43.93 3.02
2614 6710 2.587612 TTGTGTTATTCGCGCAGAAC 57.412 45.000 9.31 9.31 42.39 3.01
2615 6711 1.503294 TGTGTTATTCGCGCAGAACA 58.497 45.000 14.68 14.68 42.39 3.18
2616 6712 2.073056 TGTGTTATTCGCGCAGAACAT 58.927 42.857 20.79 0.96 42.39 2.71
2617 6713 2.159720 TGTGTTATTCGCGCAGAACATG 60.160 45.455 20.79 0.00 42.39 3.21
2632 6728 4.807304 CAGAACATGCCTTGCCAATATTTC 59.193 41.667 0.00 0.00 0.00 2.17
2634 6730 2.435437 ACATGCCTTGCCAATATTTCCC 59.565 45.455 0.00 0.00 0.00 3.97
2636 6732 0.389025 GCCTTGCCAATATTTCCCGG 59.611 55.000 0.00 0.00 0.00 5.73
2643 6739 1.214424 CCAATATTTCCCGGGTCAGGT 59.786 52.381 22.86 6.12 0.00 4.00
2658 6757 2.361865 GGTTTGCCCCACCGCATA 60.362 61.111 0.00 0.00 38.87 3.14
2666 6765 1.749286 GCCCCACCGCATAATGTAGTT 60.749 52.381 0.00 0.00 0.00 2.24
2707 6806 5.686650 GCCGGAATTATTACTCTTCCCAGAA 60.687 44.000 5.05 0.00 35.97 3.02
2717 6816 0.764890 CTTCCCAGAAGTGGTCACCA 59.235 55.000 0.00 0.00 43.23 4.17
2763 6862 1.094785 GCCGTAGTACTTCCGTACCA 58.905 55.000 0.00 0.00 45.68 3.25
2764 6863 1.202188 GCCGTAGTACTTCCGTACCAC 60.202 57.143 0.00 0.00 45.68 4.16
2765 6864 2.359900 CCGTAGTACTTCCGTACCACT 58.640 52.381 0.00 0.00 45.68 4.00
2766 6865 2.352960 CCGTAGTACTTCCGTACCACTC 59.647 54.545 0.00 0.00 45.68 3.51
2767 6866 3.002791 CGTAGTACTTCCGTACCACTCA 58.997 50.000 0.00 0.00 45.68 3.41
2768 6867 3.436704 CGTAGTACTTCCGTACCACTCAA 59.563 47.826 0.00 0.00 45.68 3.02
2769 6868 3.930634 AGTACTTCCGTACCACTCAAC 57.069 47.619 0.00 0.00 45.68 3.18
2770 6869 3.225104 AGTACTTCCGTACCACTCAACA 58.775 45.455 0.00 0.00 45.68 3.33
2771 6870 2.521105 ACTTCCGTACCACTCAACAC 57.479 50.000 0.00 0.00 0.00 3.32
2772 6871 1.069668 ACTTCCGTACCACTCAACACC 59.930 52.381 0.00 0.00 0.00 4.16
2773 6872 1.069513 CTTCCGTACCACTCAACACCA 59.930 52.381 0.00 0.00 0.00 4.17
2774 6873 0.677288 TCCGTACCACTCAACACCAG 59.323 55.000 0.00 0.00 0.00 4.00
2775 6874 0.391597 CCGTACCACTCAACACCAGT 59.608 55.000 0.00 0.00 0.00 4.00
2776 6875 1.614903 CCGTACCACTCAACACCAGTA 59.385 52.381 0.00 0.00 0.00 2.74
2777 6876 2.232941 CCGTACCACTCAACACCAGTAT 59.767 50.000 0.00 0.00 0.00 2.12
2778 6877 3.250744 CGTACCACTCAACACCAGTATG 58.749 50.000 0.00 0.00 0.00 2.39
2779 6878 2.185004 ACCACTCAACACCAGTATGC 57.815 50.000 0.00 0.00 31.97 3.14
2780 6879 1.419762 ACCACTCAACACCAGTATGCA 59.580 47.619 0.00 0.00 31.97 3.96
2781 6880 2.040278 ACCACTCAACACCAGTATGCAT 59.960 45.455 3.79 3.79 31.97 3.96
2788 6887 4.699735 TCAACACCAGTATGCATTACCTTG 59.300 41.667 3.54 0.00 31.97 3.61
2792 6891 5.357878 ACACCAGTATGCATTACCTTGATTG 59.642 40.000 3.54 0.00 31.97 2.67
2794 6893 4.889409 CCAGTATGCATTACCTTGATTGGT 59.111 41.667 3.54 0.00 38.38 3.67
2825 6924 1.949847 TAGTGCTTCCTCTCGCTGGC 61.950 60.000 0.00 0.00 0.00 4.85
2842 6941 3.084039 CTGGCCTTTGAGCATCTACAAA 58.916 45.455 3.32 0.00 34.92 2.83
2850 6949 2.736721 TGAGCATCTACAAACGCAACTC 59.263 45.455 0.00 0.00 34.92 3.01
2852 6951 2.480419 AGCATCTACAAACGCAACTCAC 59.520 45.455 0.00 0.00 0.00 3.51
2860 6959 3.178267 CAAACGCAACTCACAAATGTGT 58.822 40.909 12.87 0.00 45.76 3.72
2862 6961 2.288666 ACGCAACTCACAAATGTGTCT 58.711 42.857 12.87 0.00 45.76 3.41
2865 6964 2.618241 GCAACTCACAAATGTGTCTCCA 59.382 45.455 12.87 0.00 45.76 3.86
2867 6966 2.483876 ACTCACAAATGTGTCTCCACG 58.516 47.619 12.87 0.00 44.92 4.94
2868 6967 2.158957 ACTCACAAATGTGTCTCCACGT 60.159 45.455 12.87 0.00 44.92 4.49
2869 6968 2.476619 CTCACAAATGTGTCTCCACGTC 59.523 50.000 12.87 0.00 44.92 4.34
2871 6970 2.807967 CACAAATGTGTCTCCACGTCAT 59.192 45.455 5.38 0.00 44.92 3.06
2872 6971 3.067106 ACAAATGTGTCTCCACGTCATC 58.933 45.455 0.00 0.00 44.92 2.92
2874 6973 3.685139 AATGTGTCTCCACGTCATCTT 57.315 42.857 0.00 0.00 44.92 2.40
2875 6974 2.438868 TGTGTCTCCACGTCATCTTG 57.561 50.000 0.00 0.00 44.92 3.02
2876 6975 1.960689 TGTGTCTCCACGTCATCTTGA 59.039 47.619 0.00 0.00 44.92 3.02
2877 6976 2.029918 TGTGTCTCCACGTCATCTTGAG 60.030 50.000 0.00 0.00 44.92 3.02
2878 6977 1.067565 TGTCTCCACGTCATCTTGAGC 60.068 52.381 0.00 0.00 0.00 4.26
2879 6978 0.171231 TCTCCACGTCATCTTGAGCG 59.829 55.000 0.00 0.00 0.00 5.03
2880 6979 1.416813 CTCCACGTCATCTTGAGCGC 61.417 60.000 0.00 0.00 0.00 5.92
2881 6980 1.737735 CCACGTCATCTTGAGCGCA 60.738 57.895 11.47 0.00 0.00 6.09
2882 6981 1.690283 CCACGTCATCTTGAGCGCAG 61.690 60.000 11.47 0.00 0.00 5.18
2883 6982 0.733909 CACGTCATCTTGAGCGCAGA 60.734 55.000 11.47 3.79 0.00 4.26
2885 6984 1.284657 CGTCATCTTGAGCGCAGAAT 58.715 50.000 11.47 0.00 0.00 2.40
2887 6986 2.548875 GTCATCTTGAGCGCAGAATCT 58.451 47.619 11.47 0.00 0.00 2.40
2888 6987 2.935201 GTCATCTTGAGCGCAGAATCTT 59.065 45.455 11.47 0.00 0.00 2.40
2889 6988 4.115516 GTCATCTTGAGCGCAGAATCTTA 58.884 43.478 11.47 0.00 0.00 2.10
2890 6989 4.749099 GTCATCTTGAGCGCAGAATCTTAT 59.251 41.667 11.47 0.00 0.00 1.73
2891 6990 5.236047 GTCATCTTGAGCGCAGAATCTTATT 59.764 40.000 11.47 0.00 0.00 1.40
2892 6991 6.422100 GTCATCTTGAGCGCAGAATCTTATTA 59.578 38.462 11.47 0.00 0.00 0.98
2893 6992 6.644181 TCATCTTGAGCGCAGAATCTTATTAG 59.356 38.462 11.47 0.00 0.00 1.73
2894 6993 5.907207 TCTTGAGCGCAGAATCTTATTAGT 58.093 37.500 11.47 0.00 0.00 2.24
2895 6994 5.750547 TCTTGAGCGCAGAATCTTATTAGTG 59.249 40.000 11.47 0.00 0.00 2.74
2897 6996 3.797039 AGCGCAGAATCTTATTAGTGCA 58.203 40.909 11.47 0.00 35.15 4.57
2898 6997 3.806521 AGCGCAGAATCTTATTAGTGCAG 59.193 43.478 11.47 4.63 35.15 4.41
2899 6998 3.804325 GCGCAGAATCTTATTAGTGCAGA 59.196 43.478 0.30 0.00 33.13 4.26
2901 7000 5.614231 GCGCAGAATCTTATTAGTGCAGATG 60.614 44.000 0.30 0.00 33.13 2.90
2902 7001 5.693555 CGCAGAATCTTATTAGTGCAGATGA 59.306 40.000 0.00 0.00 0.00 2.92
2903 7002 6.346439 CGCAGAATCTTATTAGTGCAGATGAC 60.346 42.308 0.00 0.00 0.00 3.06
2923 7022 0.179215 CGCTTCTTCATGTCCGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
2924 7023 0.179215 GCTTCTTCATGTCCGCAACG 60.179 55.000 0.00 0.00 0.00 4.10
2937 7038 2.710902 GCAACGCCCCCTCAAATCC 61.711 63.158 0.00 0.00 0.00 3.01
2945 7046 1.597742 CCCCTCAAATCCATGCTACG 58.402 55.000 0.00 0.00 0.00 3.51
2957 7058 2.851798 TGCTACGCATGCAACATGA 58.148 47.368 19.57 0.00 37.51 3.07
2973 7074 6.763135 TGCAACATGATCAACTTAGGTAGATC 59.237 38.462 0.00 0.00 37.86 2.75
2983 7084 7.088905 TCAACTTAGGTAGATCGAACTTGAAC 58.911 38.462 0.00 0.00 0.00 3.18
2991 7092 5.786401 AGATCGAACTTGAACATAGCAAC 57.214 39.130 0.00 0.00 0.00 4.17
2992 7093 5.482908 AGATCGAACTTGAACATAGCAACT 58.517 37.500 0.00 0.00 0.00 3.16
2996 7097 3.788227 ACTTGAACATAGCAACTGGGA 57.212 42.857 0.00 0.00 0.00 4.37
2997 7098 4.307032 ACTTGAACATAGCAACTGGGAT 57.693 40.909 0.00 0.00 0.00 3.85
3031 7132 5.196341 TCATCACATAGATACAACCGGAC 57.804 43.478 9.46 0.00 34.43 4.79
3036 7137 4.932799 CACATAGATACAACCGGACACAAA 59.067 41.667 9.46 0.00 0.00 2.83
3046 7147 2.158559 CCGGACACAAAATGGTCATCA 58.841 47.619 0.00 0.00 35.74 3.07
3051 7152 4.380867 GGACACAAAATGGTCATCATCACC 60.381 45.833 0.00 0.00 34.44 4.02
3064 7165 4.825634 TCATCATCACCTAGGTACGGTAAG 59.174 45.833 15.80 0.00 32.37 2.34
3066 7167 1.767759 TCACCTAGGTACGGTAAGCC 58.232 55.000 15.80 0.00 32.37 4.35
3072 7173 2.947448 AGGTACGGTAAGCCTAAACG 57.053 50.000 0.00 0.00 0.00 3.60
3075 7176 4.207165 AGGTACGGTAAGCCTAAACGATA 58.793 43.478 0.00 0.00 0.00 2.92
3085 7186 9.623350 GGTAAGCCTAAACGATAGATAAACTAG 57.377 37.037 0.00 0.00 41.38 2.57
3163 7264 9.176460 ACATGGACATTTTTCAAATTTTCAAGT 57.824 25.926 0.00 0.00 0.00 3.16
3231 7332 2.844122 AAAACAGCAGTTCACGAACC 57.156 45.000 6.30 0.00 42.06 3.62
3235 7336 0.868406 CAGCAGTTCACGAACCTTCC 59.132 55.000 6.30 0.00 42.06 3.46
3240 7341 2.680841 CAGTTCACGAACCTTCCAACAA 59.319 45.455 6.30 0.00 42.06 2.83
3244 7345 2.940410 TCACGAACCTTCCAACAAGTTC 59.060 45.455 0.00 0.00 36.19 3.01
3246 7347 2.092592 ACGAACCTTCCAACAAGTTCCT 60.093 45.455 0.00 0.00 36.16 3.36
3250 7351 5.505159 CGAACCTTCCAACAAGTTCCTAAAC 60.505 44.000 0.00 0.00 36.16 2.01
3255 7356 2.953648 CCAACAAGTTCCTAAACCCGTT 59.046 45.455 0.00 0.00 35.92 4.44
3275 7376 1.507141 CGGTTTGCTCGCTTCACCTT 61.507 55.000 0.00 0.00 0.00 3.50
3277 7378 0.944386 GTTTGCTCGCTTCACCTTGA 59.056 50.000 0.00 0.00 0.00 3.02
3284 7385 3.188460 GCTCGCTTCACCTTGATTTGTAA 59.812 43.478 0.00 0.00 0.00 2.41
3286 7387 5.619981 GCTCGCTTCACCTTGATTTGTAATT 60.620 40.000 0.00 0.00 0.00 1.40
3297 7399 1.949799 TTTGTAATTGGCCAGCCCAT 58.050 45.000 5.11 0.00 44.89 4.00
3307 7409 0.979665 GCCAGCCCATCTATCTAGCA 59.020 55.000 0.00 0.00 0.00 3.49
3315 7417 4.815269 CCCATCTATCTAGCACTAGCAAC 58.185 47.826 0.00 0.00 45.49 4.17
3316 7418 4.322349 CCCATCTATCTAGCACTAGCAACC 60.322 50.000 0.00 0.00 45.49 3.77
3317 7419 4.480541 CATCTATCTAGCACTAGCAACCG 58.519 47.826 0.00 0.00 45.49 4.44
3318 7420 3.816994 TCTATCTAGCACTAGCAACCGA 58.183 45.455 0.00 0.00 45.49 4.69
3319 7421 4.399219 TCTATCTAGCACTAGCAACCGAT 58.601 43.478 0.00 0.00 45.49 4.18
3320 7422 3.651803 ATCTAGCACTAGCAACCGATC 57.348 47.619 0.00 0.00 45.49 3.69
3321 7423 1.333931 TCTAGCACTAGCAACCGATCG 59.666 52.381 8.51 8.51 45.49 3.69
3322 7424 0.248907 TAGCACTAGCAACCGATCGC 60.249 55.000 10.32 0.00 45.49 4.58
3323 7425 1.519455 GCACTAGCAACCGATCGCT 60.519 57.895 10.32 3.63 42.34 4.93
3324 7426 0.248907 GCACTAGCAACCGATCGCTA 60.249 55.000 10.32 4.73 39.70 4.26
3326 7428 1.852895 CACTAGCAACCGATCGCTAAC 59.147 52.381 10.32 0.00 40.09 2.34
3328 7430 2.094390 ACTAGCAACCGATCGCTAACAA 60.094 45.455 10.32 0.00 40.09 2.83
3330 7432 1.463444 AGCAACCGATCGCTAACAAAC 59.537 47.619 10.32 0.00 36.50 2.93
3331 7433 1.785518 GCAACCGATCGCTAACAAACG 60.786 52.381 10.32 0.00 0.00 3.60
3332 7434 1.722464 CAACCGATCGCTAACAAACGA 59.278 47.619 10.32 0.00 43.33 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 8.893563 TTTCCTTGACCCATTGTAGATTAATT 57.106 30.769 0.00 0.00 0.00 1.40
99 105 5.815233 TCTATCCTATGAGCCAAAAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
100 106 9.213799 GTAATTCTATCCTATGAGCCAAAAGAG 57.786 37.037 0.00 0.00 0.00 2.85
101 107 8.157476 GGTAATTCTATCCTATGAGCCAAAAGA 58.843 37.037 0.00 0.00 0.00 2.52
102 108 7.118390 CGGTAATTCTATCCTATGAGCCAAAAG 59.882 40.741 0.00 0.00 0.00 2.27
103 109 6.934645 CGGTAATTCTATCCTATGAGCCAAAA 59.065 38.462 0.00 0.00 0.00 2.44
104 110 6.042781 ACGGTAATTCTATCCTATGAGCCAAA 59.957 38.462 0.00 0.00 0.00 3.28
105 111 5.542635 ACGGTAATTCTATCCTATGAGCCAA 59.457 40.000 0.00 0.00 0.00 4.52
106 112 5.084519 ACGGTAATTCTATCCTATGAGCCA 58.915 41.667 0.00 0.00 0.00 4.75
107 113 5.662674 ACGGTAATTCTATCCTATGAGCC 57.337 43.478 0.00 0.00 0.00 4.70
108 114 6.602406 TCCTACGGTAATTCTATCCTATGAGC 59.398 42.308 0.00 0.00 0.00 4.26
109 115 8.577048 TTCCTACGGTAATTCTATCCTATGAG 57.423 38.462 0.00 0.00 0.00 2.90
112 118 9.643735 CCTATTCCTACGGTAATTCTATCCTAT 57.356 37.037 0.00 0.00 0.00 2.57
113 119 8.839745 TCCTATTCCTACGGTAATTCTATCCTA 58.160 37.037 0.00 0.00 0.00 2.94
114 120 7.706674 TCCTATTCCTACGGTAATTCTATCCT 58.293 38.462 0.00 0.00 0.00 3.24
115 121 7.951347 TCCTATTCCTACGGTAATTCTATCC 57.049 40.000 0.00 0.00 0.00 2.59
119 125 9.338622 CAAAATTCCTATTCCTACGGTAATTCT 57.661 33.333 0.00 0.00 0.00 2.40
120 126 9.117183 ACAAAATTCCTATTCCTACGGTAATTC 57.883 33.333 0.00 0.00 0.00 2.17
122 128 9.774413 CTACAAAATTCCTATTCCTACGGTAAT 57.226 33.333 0.00 0.00 0.00 1.89
123 129 8.206189 CCTACAAAATTCCTATTCCTACGGTAA 58.794 37.037 0.00 0.00 0.00 2.85
124 130 7.564660 TCCTACAAAATTCCTATTCCTACGGTA 59.435 37.037 0.00 0.00 0.00 4.02
125 131 6.384886 TCCTACAAAATTCCTATTCCTACGGT 59.615 38.462 0.00 0.00 0.00 4.83
126 132 6.823497 TCCTACAAAATTCCTATTCCTACGG 58.177 40.000 0.00 0.00 0.00 4.02
127 133 8.726870 TTTCCTACAAAATTCCTATTCCTACG 57.273 34.615 0.00 0.00 0.00 3.51
130 136 9.413734 CTCATTTCCTACAAAATTCCTATTCCT 57.586 33.333 0.00 0.00 0.00 3.36
131 137 9.408648 TCTCATTTCCTACAAAATTCCTATTCC 57.591 33.333 0.00 0.00 0.00 3.01
176 182 9.619316 CATCTCGTTTCTTATTCCTACTCATAG 57.381 37.037 0.00 0.00 0.00 2.23
177 183 9.132923 ACATCTCGTTTCTTATTCCTACTCATA 57.867 33.333 0.00 0.00 0.00 2.15
178 184 8.012957 ACATCTCGTTTCTTATTCCTACTCAT 57.987 34.615 0.00 0.00 0.00 2.90
179 185 7.122204 TGACATCTCGTTTCTTATTCCTACTCA 59.878 37.037 0.00 0.00 0.00 3.41
180 186 7.481642 TGACATCTCGTTTCTTATTCCTACTC 58.518 38.462 0.00 0.00 0.00 2.59
181 187 7.406031 TGACATCTCGTTTCTTATTCCTACT 57.594 36.000 0.00 0.00 0.00 2.57
182 188 8.649973 AATGACATCTCGTTTCTTATTCCTAC 57.350 34.615 0.00 0.00 0.00 3.18
183 189 9.098355 CAAATGACATCTCGTTTCTTATTCCTA 57.902 33.333 0.00 0.00 33.97 2.94
184 190 7.066284 CCAAATGACATCTCGTTTCTTATTCCT 59.934 37.037 0.00 0.00 33.97 3.36
185 191 7.148239 ACCAAATGACATCTCGTTTCTTATTCC 60.148 37.037 0.00 0.00 33.97 3.01
186 192 7.752695 ACCAAATGACATCTCGTTTCTTATTC 58.247 34.615 0.00 0.00 33.97 1.75
187 193 7.687941 ACCAAATGACATCTCGTTTCTTATT 57.312 32.000 0.00 0.00 33.97 1.40
188 194 7.390440 TCAACCAAATGACATCTCGTTTCTTAT 59.610 33.333 0.00 0.00 33.97 1.73
189 195 6.708502 TCAACCAAATGACATCTCGTTTCTTA 59.291 34.615 0.00 0.00 33.97 2.10
190 196 5.530915 TCAACCAAATGACATCTCGTTTCTT 59.469 36.000 0.00 0.00 33.97 2.52
191 197 5.063204 TCAACCAAATGACATCTCGTTTCT 58.937 37.500 0.00 0.00 33.97 2.52
192 198 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
203 209 6.669125 ATTCCTTTGATGTCAACCAAATGA 57.331 33.333 0.00 5.19 35.28 2.57
204 210 7.733402 AAATTCCTTTGATGTCAACCAAATG 57.267 32.000 0.00 3.42 35.28 2.32
205 211 8.750515 AAAAATTCCTTTGATGTCAACCAAAT 57.249 26.923 0.00 0.00 35.28 2.32
287 293 9.621239 AGAATGGATTTCTATTCCTACATAGGA 57.379 33.333 11.63 3.36 45.40 2.94
301 307 8.981659 CCCTTTGGTTTATAAGAATGGATTTCT 58.018 33.333 0.00 0.00 46.92 2.52
302 308 7.710907 GCCCTTTGGTTTATAAGAATGGATTTC 59.289 37.037 0.00 0.00 34.31 2.17
303 309 7.402941 AGCCCTTTGGTTTATAAGAATGGATTT 59.597 33.333 0.00 0.00 0.00 2.17
304 310 6.902974 AGCCCTTTGGTTTATAAGAATGGATT 59.097 34.615 0.00 0.00 0.00 3.01
305 311 6.443832 AGCCCTTTGGTTTATAAGAATGGAT 58.556 36.000 0.00 0.00 0.00 3.41
306 312 5.837829 AGCCCTTTGGTTTATAAGAATGGA 58.162 37.500 0.00 0.00 0.00 3.41
307 313 5.893824 AGAGCCCTTTGGTTTATAAGAATGG 59.106 40.000 0.00 0.00 0.00 3.16
308 314 8.519799 TTAGAGCCCTTTGGTTTATAAGAATG 57.480 34.615 0.00 0.00 0.00 2.67
309 315 9.541884 TTTTAGAGCCCTTTGGTTTATAAGAAT 57.458 29.630 0.00 0.00 0.00 2.40
310 316 8.943594 TTTTAGAGCCCTTTGGTTTATAAGAA 57.056 30.769 0.00 0.00 0.00 2.52
311 317 8.387813 TCTTTTAGAGCCCTTTGGTTTATAAGA 58.612 33.333 0.00 0.00 0.00 2.10
312 318 8.575649 TCTTTTAGAGCCCTTTGGTTTATAAG 57.424 34.615 0.00 0.00 0.00 1.73
313 319 8.943594 TTCTTTTAGAGCCCTTTGGTTTATAA 57.056 30.769 0.00 0.00 0.00 0.98
314 320 8.943594 TTTCTTTTAGAGCCCTTTGGTTTATA 57.056 30.769 0.00 0.00 0.00 0.98
315 321 7.849322 TTTCTTTTAGAGCCCTTTGGTTTAT 57.151 32.000 0.00 0.00 0.00 1.40
316 322 7.663043 TTTTCTTTTAGAGCCCTTTGGTTTA 57.337 32.000 0.00 0.00 0.00 2.01
317 323 6.553953 TTTTCTTTTAGAGCCCTTTGGTTT 57.446 33.333 0.00 0.00 0.00 3.27
318 324 6.553953 TTTTTCTTTTAGAGCCCTTTGGTT 57.446 33.333 0.00 0.00 0.00 3.67
360 366 9.404077 AGGAATTTCATAGGAATTCTAGAGGAT 57.596 33.333 5.23 0.00 31.93 3.24
361 367 8.805145 AGGAATTTCATAGGAATTCTAGAGGA 57.195 34.615 5.23 0.00 31.93 3.71
362 368 8.100164 GGAGGAATTTCATAGGAATTCTAGAGG 58.900 40.741 5.23 0.00 31.93 3.69
363 369 8.654997 TGGAGGAATTTCATAGGAATTCTAGAG 58.345 37.037 5.23 0.00 31.93 2.43
364 370 8.567198 TGGAGGAATTTCATAGGAATTCTAGA 57.433 34.615 5.23 0.00 31.93 2.43
365 371 9.632638 TTTGGAGGAATTTCATAGGAATTCTAG 57.367 33.333 5.23 0.00 31.93 2.43
366 372 9.408648 GTTTGGAGGAATTTCATAGGAATTCTA 57.591 33.333 5.23 0.00 31.93 2.10
367 373 7.343057 GGTTTGGAGGAATTTCATAGGAATTCT 59.657 37.037 5.23 0.00 31.93 2.40
368 374 7.124147 TGGTTTGGAGGAATTTCATAGGAATTC 59.876 37.037 0.00 0.00 31.93 2.17
369 375 6.959366 TGGTTTGGAGGAATTTCATAGGAATT 59.041 34.615 0.00 0.00 31.93 2.17
370 376 6.502138 TGGTTTGGAGGAATTTCATAGGAAT 58.498 36.000 0.00 0.00 31.93 3.01
371 377 5.898120 TGGTTTGGAGGAATTTCATAGGAA 58.102 37.500 0.00 0.00 0.00 3.36
372 378 5.528600 TGGTTTGGAGGAATTTCATAGGA 57.471 39.130 0.00 0.00 0.00 2.94
373 379 6.351286 CCTTTGGTTTGGAGGAATTTCATAGG 60.351 42.308 0.00 0.00 32.11 2.57
374 380 6.633856 CCTTTGGTTTGGAGGAATTTCATAG 58.366 40.000 0.00 0.00 32.11 2.23
375 381 5.046663 GCCTTTGGTTTGGAGGAATTTCATA 60.047 40.000 0.00 0.00 32.11 2.15
376 382 4.263025 GCCTTTGGTTTGGAGGAATTTCAT 60.263 41.667 0.00 0.00 32.11 2.57
377 383 3.070878 GCCTTTGGTTTGGAGGAATTTCA 59.929 43.478 0.00 0.00 32.11 2.69
378 384 3.664107 GCCTTTGGTTTGGAGGAATTTC 58.336 45.455 0.00 0.00 32.11 2.17
379 385 2.037121 CGCCTTTGGTTTGGAGGAATTT 59.963 45.455 0.00 0.00 32.11 1.82
380 386 1.618343 CGCCTTTGGTTTGGAGGAATT 59.382 47.619 0.00 0.00 32.11 2.17
381 387 1.256812 CGCCTTTGGTTTGGAGGAAT 58.743 50.000 0.00 0.00 32.11 3.01
382 388 0.106419 ACGCCTTTGGTTTGGAGGAA 60.106 50.000 0.00 0.00 32.11 3.36
383 389 0.766131 TACGCCTTTGGTTTGGAGGA 59.234 50.000 0.00 0.00 32.11 3.71
384 390 1.611519 TTACGCCTTTGGTTTGGAGG 58.388 50.000 0.00 0.00 0.00 4.30
385 391 2.030274 CCTTTACGCCTTTGGTTTGGAG 60.030 50.000 0.00 0.00 0.00 3.86
386 392 1.957877 CCTTTACGCCTTTGGTTTGGA 59.042 47.619 0.00 0.00 0.00 3.53
387 393 1.684450 ACCTTTACGCCTTTGGTTTGG 59.316 47.619 0.00 0.00 0.00 3.28
388 394 3.120041 CAACCTTTACGCCTTTGGTTTG 58.880 45.455 0.00 0.00 38.76 2.93
389 395 2.482316 GCAACCTTTACGCCTTTGGTTT 60.482 45.455 0.00 0.00 38.76 3.27
390 396 1.067974 GCAACCTTTACGCCTTTGGTT 59.932 47.619 0.00 0.00 41.12 3.67
391 397 0.671796 GCAACCTTTACGCCTTTGGT 59.328 50.000 0.00 0.00 0.00 3.67
392 398 0.038618 GGCAACCTTTACGCCTTTGG 60.039 55.000 0.00 0.00 42.78 3.28
393 399 3.489813 GGCAACCTTTACGCCTTTG 57.510 52.632 0.00 0.00 42.78 2.77
414 420 2.105528 CAAATGCATGCCCGAGCC 59.894 61.111 16.68 0.00 38.69 4.70
423 429 0.732571 CGTTAGGTCGGCAAATGCAT 59.267 50.000 7.80 0.00 44.36 3.96
440 446 2.983433 CTAGCAAGCTAGCATGCGT 58.017 52.632 32.21 23.92 44.22 5.24
450 456 3.528597 AAGCTACTGGTACTAGCAAGC 57.471 47.619 20.19 20.19 39.36 4.01
451 457 5.536916 AGGATAAGCTACTGGTACTAGCAAG 59.463 44.000 6.09 5.56 39.36 4.01
452 458 5.455872 AGGATAAGCTACTGGTACTAGCAA 58.544 41.667 6.09 0.00 39.36 3.91
453 459 5.063017 AGGATAAGCTACTGGTACTAGCA 57.937 43.478 6.09 0.00 39.36 3.49
454 460 4.460034 GGAGGATAAGCTACTGGTACTAGC 59.540 50.000 6.09 5.36 37.48 3.42
455 461 5.011586 GGGAGGATAAGCTACTGGTACTAG 58.988 50.000 4.44 4.44 0.00 2.57
456 462 4.417854 TGGGAGGATAAGCTACTGGTACTA 59.582 45.833 0.00 0.00 0.00 1.82
457 463 3.206866 TGGGAGGATAAGCTACTGGTACT 59.793 47.826 0.00 0.00 0.00 2.73
458 464 3.573695 TGGGAGGATAAGCTACTGGTAC 58.426 50.000 0.00 0.00 0.00 3.34
459 465 3.985553 TGGGAGGATAAGCTACTGGTA 57.014 47.619 0.00 0.00 0.00 3.25
460 466 2.868964 TGGGAGGATAAGCTACTGGT 57.131 50.000 0.00 0.00 0.00 4.00
462 468 3.057174 GTCGATGGGAGGATAAGCTACTG 60.057 52.174 0.00 0.00 0.00 2.74
463 469 3.158676 GTCGATGGGAGGATAAGCTACT 58.841 50.000 0.00 0.00 0.00 2.57
464 470 3.057174 CAGTCGATGGGAGGATAAGCTAC 60.057 52.174 0.00 0.00 0.00 3.58
487 4132 5.064441 AGTGAGATTGCCAAAGTTAATGC 57.936 39.130 0.00 0.00 0.00 3.56
494 4139 2.670414 GAGACGAGTGAGATTGCCAAAG 59.330 50.000 0.00 0.00 0.00 2.77
630 4518 0.250770 ACTCCCGCTCTTGGTTTTCC 60.251 55.000 0.00 0.00 41.14 3.13
631 4519 2.467566 TACTCCCGCTCTTGGTTTTC 57.532 50.000 0.00 0.00 0.00 2.29
632 4520 2.158726 TGTTACTCCCGCTCTTGGTTTT 60.159 45.455 0.00 0.00 0.00 2.43
633 4521 1.418637 TGTTACTCCCGCTCTTGGTTT 59.581 47.619 0.00 0.00 0.00 3.27
634 4522 1.053424 TGTTACTCCCGCTCTTGGTT 58.947 50.000 0.00 0.00 0.00 3.67
635 4523 0.320697 GTGTTACTCCCGCTCTTGGT 59.679 55.000 0.00 0.00 0.00 3.67
636 4524 0.391263 GGTGTTACTCCCGCTCTTGG 60.391 60.000 0.00 0.00 0.00 3.61
637 4525 0.736325 CGGTGTTACTCCCGCTCTTG 60.736 60.000 0.00 0.00 37.43 3.02
644 4554 2.046604 GCACCCGGTGTTACTCCC 60.047 66.667 18.95 0.00 35.75 4.30
648 4561 1.964373 CTGTGGCACCCGGTGTTAC 60.964 63.158 18.95 16.89 35.75 2.50
756 4683 5.067153 CCAGCACGGAATTATTTGGACAATA 59.933 40.000 0.00 0.00 36.56 1.90
902 4834 1.680105 CGCGCCGTAACAGTAACCAG 61.680 60.000 0.00 0.00 0.00 4.00
903 4835 1.733758 CGCGCCGTAACAGTAACCA 60.734 57.895 0.00 0.00 0.00 3.67
905 4837 1.689352 ATGCGCGCCGTAACAGTAAC 61.689 55.000 30.77 0.00 0.00 2.50
906 4838 1.415288 GATGCGCGCCGTAACAGTAA 61.415 55.000 30.77 5.62 0.00 2.24
910 4848 0.806492 TATTGATGCGCGCCGTAACA 60.806 50.000 30.77 17.57 0.00 2.41
1038 4986 1.556451 TGCTCTATGGCTTCTCTGCAA 59.444 47.619 0.00 0.00 34.04 4.08
1039 4987 1.197812 TGCTCTATGGCTTCTCTGCA 58.802 50.000 0.00 0.00 34.04 4.41
1040 4988 1.939255 GTTGCTCTATGGCTTCTCTGC 59.061 52.381 0.00 0.00 0.00 4.26
1041 4989 2.170187 AGGTTGCTCTATGGCTTCTCTG 59.830 50.000 0.00 0.00 0.00 3.35
1042 4990 2.170187 CAGGTTGCTCTATGGCTTCTCT 59.830 50.000 0.00 0.00 0.00 3.10
1219 5182 4.762251 AGTTGCTTATTCACCTGGAAGAAC 59.238 41.667 0.00 0.97 39.30 3.01
1236 5199 4.184629 GTTGATCGAGTTATGGAGTTGCT 58.815 43.478 0.00 0.00 0.00 3.91
1333 5319 3.071206 AGGACCTGCTCGCACGAT 61.071 61.111 0.00 0.00 0.00 3.73
1334 5320 4.056125 CAGGACCTGCTCGCACGA 62.056 66.667 8.99 0.00 0.00 4.35
1366 5365 1.226802 CTCGTCCATCAGCTCCGTG 60.227 63.158 0.00 0.00 0.00 4.94
2285 6338 1.187087 ACAGTAGCCAGTGGTCTAGC 58.813 55.000 11.74 7.74 0.00 3.42
2289 6342 1.202770 ACCAAACAGTAGCCAGTGGTC 60.203 52.381 11.74 3.09 34.23 4.02
2326 6379 1.148048 TAGCACACAAGCCAGCACA 59.852 52.632 0.00 0.00 34.23 4.57
2327 6380 1.576421 GTAGCACACAAGCCAGCAC 59.424 57.895 0.00 0.00 34.23 4.40
2359 6415 6.978338 TGACAAACACTCCTACTTACTACAG 58.022 40.000 0.00 0.00 0.00 2.74
2366 6422 5.277828 GCGAAAATGACAAACACTCCTACTT 60.278 40.000 0.00 0.00 0.00 2.24
2367 6423 4.213482 GCGAAAATGACAAACACTCCTACT 59.787 41.667 0.00 0.00 0.00 2.57
2368 6424 4.213482 AGCGAAAATGACAAACACTCCTAC 59.787 41.667 0.00 0.00 0.00 3.18
2369 6425 4.213270 CAGCGAAAATGACAAACACTCCTA 59.787 41.667 0.00 0.00 0.00 2.94
2427 6483 5.763204 GGGAATAAGAACAGACACAGAACAA 59.237 40.000 0.00 0.00 0.00 2.83
2484 6540 0.531200 AAGGAGGCAGCACGTAGTAC 59.469 55.000 0.00 0.00 41.61 2.73
2485 6541 0.530744 CAAGGAGGCAGCACGTAGTA 59.469 55.000 0.00 0.00 41.61 1.82
2487 6543 1.016130 CACAAGGAGGCAGCACGTAG 61.016 60.000 0.00 0.00 0.00 3.51
2519 6575 1.725641 TGGCAACACTCATAGAAGCG 58.274 50.000 0.00 0.00 46.17 4.68
2535 6591 1.290009 GTGATGGTGGCAAGTTGGC 59.710 57.895 21.83 21.83 44.03 4.52
2536 6592 1.580942 CGTGATGGTGGCAAGTTGG 59.419 57.895 4.75 0.00 0.00 3.77
2537 6593 1.081242 GCGTGATGGTGGCAAGTTG 60.081 57.895 0.00 0.00 0.00 3.16
2538 6594 2.268076 GGCGTGATGGTGGCAAGTT 61.268 57.895 0.00 0.00 0.00 2.66
2539 6595 2.672996 GGCGTGATGGTGGCAAGT 60.673 61.111 0.00 0.00 0.00 3.16
2540 6596 2.267351 TTGGCGTGATGGTGGCAAG 61.267 57.895 0.00 0.00 44.45 4.01
2541 6597 2.203408 TTGGCGTGATGGTGGCAA 60.203 55.556 0.00 0.00 46.71 4.52
2542 6598 2.983030 GTTGGCGTGATGGTGGCA 60.983 61.111 0.00 0.00 39.06 4.92
2543 6599 2.983030 TGTTGGCGTGATGGTGGC 60.983 61.111 0.00 0.00 0.00 5.01
2544 6600 2.953821 GTGTTGGCGTGATGGTGG 59.046 61.111 0.00 0.00 0.00 4.61
2573 6636 1.963338 GTGGCAAGTTCAGCTCGCT 60.963 57.895 0.00 0.00 0.00 4.93
2578 6641 1.069049 ACAAATGGTGGCAAGTTCAGC 59.931 47.619 0.00 0.00 0.00 4.26
2594 6690 2.288186 TGTTCTGCGCGAATAACACAAA 59.712 40.909 13.58 0.00 33.45 2.83
2609 6705 4.395959 AATATTGGCAAGGCATGTTCTG 57.604 40.909 5.96 0.00 0.00 3.02
2611 6707 4.122046 GGAAATATTGGCAAGGCATGTTC 58.878 43.478 5.96 3.59 0.00 3.18
2613 6709 2.435437 GGGAAATATTGGCAAGGCATGT 59.565 45.455 5.96 0.00 0.00 3.21
2614 6710 2.546373 CGGGAAATATTGGCAAGGCATG 60.546 50.000 5.96 0.00 0.00 4.06
2615 6711 1.688197 CGGGAAATATTGGCAAGGCAT 59.312 47.619 5.96 0.00 0.00 4.40
2616 6712 1.110442 CGGGAAATATTGGCAAGGCA 58.890 50.000 5.96 0.00 0.00 4.75
2617 6713 0.389025 CCGGGAAATATTGGCAAGGC 59.611 55.000 5.96 0.00 0.00 4.35
2618 6714 1.039856 CCCGGGAAATATTGGCAAGG 58.960 55.000 18.48 0.00 0.00 3.61
2619 6715 1.681264 GACCCGGGAAATATTGGCAAG 59.319 52.381 32.02 0.00 0.00 4.01
2649 6745 3.309682 CACTGAACTACATTATGCGGTGG 59.690 47.826 0.00 0.00 0.00 4.61
2650 6746 3.932710 ACACTGAACTACATTATGCGGTG 59.067 43.478 0.00 0.00 38.30 4.94
2658 6757 3.002246 CGTTGTGCACACTGAACTACATT 59.998 43.478 21.56 0.00 0.00 2.71
2666 6765 3.806651 CACCGTTGTGCACACTGA 58.193 55.556 21.56 1.32 35.31 3.41
2717 6816 2.157863 GCTTTCTTAGCGCGAGAAAAGT 59.842 45.455 28.95 5.32 41.21 2.66
2763 6862 4.019321 AGGTAATGCATACTGGTGTTGAGT 60.019 41.667 0.00 0.00 34.74 3.41
2764 6863 4.517285 AGGTAATGCATACTGGTGTTGAG 58.483 43.478 0.00 0.00 34.74 3.02
2765 6864 4.568072 AGGTAATGCATACTGGTGTTGA 57.432 40.909 0.00 0.00 34.74 3.18
2766 6865 4.699735 TCAAGGTAATGCATACTGGTGTTG 59.300 41.667 0.00 0.00 34.74 3.33
2767 6866 4.917385 TCAAGGTAATGCATACTGGTGTT 58.083 39.130 0.00 0.00 34.74 3.32
2768 6867 4.568072 TCAAGGTAATGCATACTGGTGT 57.432 40.909 0.00 0.00 34.74 4.16
2769 6868 5.221106 CCAATCAAGGTAATGCATACTGGTG 60.221 44.000 0.00 0.00 34.74 4.17
2770 6869 4.889409 CCAATCAAGGTAATGCATACTGGT 59.111 41.667 0.00 0.00 34.74 4.00
2771 6870 4.889409 ACCAATCAAGGTAATGCATACTGG 59.111 41.667 0.00 0.00 40.98 4.00
2772 6871 6.127647 ACAACCAATCAAGGTAATGCATACTG 60.128 38.462 0.00 0.00 42.25 2.74
2773 6872 5.951747 ACAACCAATCAAGGTAATGCATACT 59.048 36.000 0.00 0.00 42.25 2.12
2774 6873 6.207691 ACAACCAATCAAGGTAATGCATAC 57.792 37.500 0.00 0.00 42.25 2.39
2775 6874 7.066887 CAGTACAACCAATCAAGGTAATGCATA 59.933 37.037 0.00 0.00 42.25 3.14
2776 6875 5.951747 AGTACAACCAATCAAGGTAATGCAT 59.048 36.000 0.00 0.00 42.25 3.96
2777 6876 5.182950 CAGTACAACCAATCAAGGTAATGCA 59.817 40.000 0.00 0.00 42.25 3.96
2778 6877 5.183140 ACAGTACAACCAATCAAGGTAATGC 59.817 40.000 0.00 0.00 42.25 3.56
2779 6878 6.817765 ACAGTACAACCAATCAAGGTAATG 57.182 37.500 0.00 0.00 42.25 1.90
2780 6879 7.001674 TGAACAGTACAACCAATCAAGGTAAT 58.998 34.615 0.00 0.00 42.25 1.89
2781 6880 6.358178 TGAACAGTACAACCAATCAAGGTAA 58.642 36.000 0.00 0.00 42.25 2.85
2788 6887 5.643777 AGCACTATGAACAGTACAACCAATC 59.356 40.000 0.00 0.00 0.00 2.67
2792 6891 4.392138 GGAAGCACTATGAACAGTACAACC 59.608 45.833 0.00 0.00 0.00 3.77
2794 6893 5.246203 AGAGGAAGCACTATGAACAGTACAA 59.754 40.000 0.00 0.00 0.00 2.41
2825 6924 2.483877 TGCGTTTGTAGATGCTCAAAGG 59.516 45.455 0.00 0.00 40.23 3.11
2860 6959 0.171231 CGCTCAAGATGACGTGGAGA 59.829 55.000 0.00 0.00 0.00 3.71
2862 6961 1.446099 GCGCTCAAGATGACGTGGA 60.446 57.895 0.00 0.00 0.00 4.02
2865 6964 0.038251 TTCTGCGCTCAAGATGACGT 60.038 50.000 9.73 0.00 0.00 4.34
2867 6966 2.548875 AGATTCTGCGCTCAAGATGAC 58.451 47.619 9.73 0.00 0.00 3.06
2868 6967 2.975732 AGATTCTGCGCTCAAGATGA 57.024 45.000 9.73 0.00 0.00 2.92
2869 6968 5.670149 AATAAGATTCTGCGCTCAAGATG 57.330 39.130 9.73 0.00 0.00 2.90
2871 6970 5.750547 CACTAATAAGATTCTGCGCTCAAGA 59.249 40.000 9.73 0.00 0.00 3.02
2872 6971 5.557893 GCACTAATAAGATTCTGCGCTCAAG 60.558 44.000 9.73 0.00 0.00 3.02
2874 6973 3.804325 GCACTAATAAGATTCTGCGCTCA 59.196 43.478 9.73 0.00 0.00 4.26
2875 6974 3.804325 TGCACTAATAAGATTCTGCGCTC 59.196 43.478 9.73 0.00 0.00 5.03
2876 6975 3.797039 TGCACTAATAAGATTCTGCGCT 58.203 40.909 9.73 0.00 0.00 5.92
2877 6976 3.804325 TCTGCACTAATAAGATTCTGCGC 59.196 43.478 0.00 0.00 0.00 6.09
2878 6977 5.693555 TCATCTGCACTAATAAGATTCTGCG 59.306 40.000 0.00 0.00 0.00 5.18
2879 6978 6.073331 GGTCATCTGCACTAATAAGATTCTGC 60.073 42.308 0.00 0.00 0.00 4.26
2880 6979 6.145209 CGGTCATCTGCACTAATAAGATTCTG 59.855 42.308 0.00 0.00 0.00 3.02
2881 6980 6.219473 CGGTCATCTGCACTAATAAGATTCT 58.781 40.000 0.00 0.00 0.00 2.40
2882 6981 5.107298 GCGGTCATCTGCACTAATAAGATTC 60.107 44.000 0.00 0.00 44.61 2.52
2883 6982 4.752101 GCGGTCATCTGCACTAATAAGATT 59.248 41.667 0.00 0.00 44.61 2.40
2885 6984 3.717707 GCGGTCATCTGCACTAATAAGA 58.282 45.455 0.00 0.00 44.61 2.10
2895 6994 1.329906 CATGAAGAAGCGGTCATCTGC 59.670 52.381 0.00 0.00 45.49 4.26
2897 6996 2.419297 GGACATGAAGAAGCGGTCATCT 60.419 50.000 0.00 0.00 32.06 2.90
2898 6997 1.936547 GGACATGAAGAAGCGGTCATC 59.063 52.381 0.00 0.00 32.06 2.92
2899 6998 1.740380 CGGACATGAAGAAGCGGTCAT 60.740 52.381 0.00 0.00 34.78 3.06
2901 7000 1.696832 GCGGACATGAAGAAGCGGTC 61.697 60.000 0.00 0.00 0.00 4.79
2902 7001 1.741770 GCGGACATGAAGAAGCGGT 60.742 57.895 0.00 0.00 0.00 5.68
2903 7002 1.298157 TTGCGGACATGAAGAAGCGG 61.298 55.000 0.00 0.00 0.00 5.52
2923 7022 2.492773 GCATGGATTTGAGGGGGCG 61.493 63.158 0.00 0.00 0.00 6.13
2924 7023 0.185901 TAGCATGGATTTGAGGGGGC 59.814 55.000 0.00 0.00 0.00 5.80
2945 7046 4.142315 ACCTAAGTTGATCATGTTGCATGC 60.142 41.667 11.82 11.82 0.00 4.06
2957 7058 7.406031 TCAAGTTCGATCTACCTAAGTTGAT 57.594 36.000 0.00 0.00 40.53 2.57
2973 7074 3.120199 CCCAGTTGCTATGTTCAAGTTCG 60.120 47.826 0.00 0.00 0.00 3.95
2983 7084 6.150976 TGAAACTTGTTATCCCAGTTGCTATG 59.849 38.462 0.00 0.00 0.00 2.23
2991 7092 6.375174 TGTGATGATGAAACTTGTTATCCCAG 59.625 38.462 0.00 0.00 0.00 4.45
2992 7093 6.244654 TGTGATGATGAAACTTGTTATCCCA 58.755 36.000 0.00 0.00 0.00 4.37
3031 7132 5.066893 CCTAGGTGATGATGACCATTTTGTG 59.933 44.000 3.42 0.00 35.17 3.33
3036 7137 4.039245 CGTACCTAGGTGATGATGACCATT 59.961 45.833 25.33 0.00 35.17 3.16
3046 7147 2.091444 AGGCTTACCGTACCTAGGTGAT 60.091 50.000 25.33 9.26 42.83 3.06
3051 7152 3.627577 TCGTTTAGGCTTACCGTACCTAG 59.372 47.826 0.00 0.00 42.76 3.02
3064 7165 9.747293 AAGTTCTAGTTTATCTATCGTTTAGGC 57.253 33.333 0.00 0.00 0.00 3.93
3217 7318 0.468226 TGGAAGGTTCGTGAACTGCT 59.532 50.000 12.10 0.00 40.94 4.24
3219 7320 2.285083 TGTTGGAAGGTTCGTGAACTG 58.715 47.619 12.10 0.00 40.94 3.16
3220 7321 2.702592 TGTTGGAAGGTTCGTGAACT 57.297 45.000 12.10 0.00 40.94 3.01
3227 7328 5.221185 GGTTTAGGAACTTGTTGGAAGGTTC 60.221 44.000 0.00 0.00 41.75 3.62
3231 7332 3.252458 CGGGTTTAGGAACTTGTTGGAAG 59.748 47.826 0.00 0.00 41.75 3.46
3235 7336 3.303526 CGAACGGGTTTAGGAACTTGTTG 60.304 47.826 0.00 0.00 41.75 3.33
3240 7341 3.921257 CCGAACGGGTTTAGGAACT 57.079 52.632 5.25 0.00 46.37 3.01
3250 7351 4.084888 GCGAGCAAACCGAACGGG 62.085 66.667 17.44 1.21 43.62 5.28
3255 7356 1.959226 GGTGAAGCGAGCAAACCGA 60.959 57.895 0.00 0.00 0.00 4.69
3261 7362 1.536766 CAAATCAAGGTGAAGCGAGCA 59.463 47.619 0.00 0.00 0.00 4.26
3265 7366 4.858692 CCAATTACAAATCAAGGTGAAGCG 59.141 41.667 0.00 0.00 0.00 4.68
3275 7376 1.830477 GGGCTGGCCAATTACAAATCA 59.170 47.619 16.34 0.00 37.98 2.57
3277 7378 1.949799 TGGGCTGGCCAATTACAAAT 58.050 45.000 21.84 0.00 37.98 2.32
3284 7385 1.453633 AGATAGATGGGCTGGCCAAT 58.546 50.000 27.56 20.04 37.98 3.16
3286 7387 1.649321 CTAGATAGATGGGCTGGCCA 58.351 55.000 26.08 26.08 37.98 5.36
3297 7399 3.816994 TCGGTTGCTAGTGCTAGATAGA 58.183 45.455 10.17 0.00 40.48 1.98
3307 7409 1.475280 TGTTAGCGATCGGTTGCTAGT 59.525 47.619 26.32 0.00 45.66 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.