Multiple sequence alignment - TraesCS5D01G240600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G240600 chr5D 100.000 4427 0 0 1 4427 349376009 349380435 0.000000e+00 8176
1 TraesCS5D01G240600 chr5A 92.958 3181 114 43 758 3887 449254823 449257944 0.000000e+00 4532
2 TraesCS5D01G240600 chr5A 91.412 524 33 4 3907 4427 449257928 449258442 0.000000e+00 708
3 TraesCS5D01G240600 chr5A 92.180 422 15 10 321 728 449254072 449254489 8.250000e-162 580
4 TraesCS5D01G240600 chr5B 93.718 1942 48 25 321 2232 409872257 409874154 0.000000e+00 2843
5 TraesCS5D01G240600 chr5B 95.135 1665 58 12 2229 3887 409874708 409876355 0.000000e+00 2604
6 TraesCS5D01G240600 chr5B 94.050 521 21 2 3909 4427 409876341 409876853 0.000000e+00 782
7 TraesCS5D01G240600 chr2D 98.746 319 4 0 1 319 155510191 155510509 6.430000e-158 568
8 TraesCS5D01G240600 chr2D 98.131 321 6 0 1 321 603523235 603523555 1.080000e-155 560
9 TraesCS5D01G240600 chr2D 97.826 322 6 1 1 321 179127907 179127586 5.000000e-154 555
10 TraesCS5D01G240600 chr4D 98.433 319 5 0 1 319 15922001 15922319 2.990000e-156 562
11 TraesCS5D01G240600 chr4D 89.764 254 24 2 1390 1641 392537963 392538216 1.540000e-84 324
12 TraesCS5D01G240600 chr1D 98.433 319 5 0 1 319 388965188 388964870 2.990000e-156 562
13 TraesCS5D01G240600 chr3B 98.119 319 6 0 1 319 416805241 416805559 1.390000e-154 556
14 TraesCS5D01G240600 chr3B 91.189 227 14 1 1231 1457 821233076 821232856 2.000000e-78 303
15 TraesCS5D01G240600 chr3B 80.049 406 73 6 1232 1636 222318457 222318855 1.200000e-75 294
16 TraesCS5D01G240600 chr3B 77.451 408 87 4 1234 1640 372896587 372896184 5.720000e-59 239
17 TraesCS5D01G240600 chr3D 98.113 318 6 0 1 318 223479734 223480051 5.000000e-154 555
18 TraesCS5D01G240600 chr3D 97.516 322 8 0 1 322 553901983 553902304 6.470000e-153 551
19 TraesCS5D01G240600 chr3D 97.516 322 7 1 1 322 91808945 91808625 2.330000e-152 549
20 TraesCS5D01G240600 chr3D 77.696 408 86 4 1234 1640 277222115 277222518 1.230000e-60 244
21 TraesCS5D01G240600 chr6D 84.615 390 37 10 1226 1597 86014015 86014399 2.520000e-97 366
22 TraesCS5D01G240600 chr6D 80.045 441 60 17 1226 1641 85997686 85998123 7.200000e-78 302
23 TraesCS5D01G240600 chr6A 84.359 390 38 11 1226 1597 103292014 103292398 1.170000e-95 361
24 TraesCS5D01G240600 chr4A 90.551 254 22 2 1390 1641 74009958 74010211 7.100000e-88 335
25 TraesCS5D01G240600 chr4B 90.157 254 23 2 1390 1641 482137849 482138102 3.300000e-86 329
26 TraesCS5D01G240600 chr3A 77.451 408 87 4 1234 1640 362202181 362201778 5.720000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G240600 chr5D 349376009 349380435 4426 False 8176.000000 8176 100.000000 1 4427 1 chr5D.!!$F1 4426
1 TraesCS5D01G240600 chr5A 449254072 449258442 4370 False 1940.000000 4532 92.183333 321 4427 3 chr5A.!!$F1 4106
2 TraesCS5D01G240600 chr5B 409872257 409876853 4596 False 2076.333333 2843 94.301000 321 4427 3 chr5B.!!$F1 4106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.032678 CAATAGACGAGCGATGGCCT 59.967 55.0 3.32 0.00 41.24 5.19 F
116 117 0.041312 CGGGTGTTTCGCAACAAGAG 60.041 55.0 1.20 0.00 44.72 2.85 F
143 144 0.107214 CCGCCTATCCTGCTCCAAAA 60.107 55.0 0.00 0.00 0.00 2.44 F
352 353 0.173481 TGCGTGGCTAGCTAGACAAG 59.827 55.0 31.31 31.31 44.25 3.16 F
666 684 0.184933 CCTCCTCCCTCTCGTCTCAT 59.815 60.0 0.00 0.00 0.00 2.90 F
2220 2619 0.250858 TCACAAGTCATGGCACTGGG 60.251 55.0 0.00 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 2016 0.252742 GGTGGGGAAGAAGAGGGAGA 60.253 60.000 0.00 0.00 0.00 3.71 R
1717 2081 1.163554 GCTCTAGCTTGCTTGCTTGT 58.836 50.000 9.11 0.00 43.74 3.16 R
2059 2455 3.417275 CTAGGCTAGCGTGCGCAGT 62.417 63.158 19.87 0.01 44.88 4.40 R
2146 2545 0.241213 CGGCATGGATCGATCGTACT 59.759 55.000 18.81 0.88 0.00 2.73 R
2324 3281 0.388649 CCAACAGCGAGCTAACGAGT 60.389 55.000 0.00 0.00 35.09 4.18 R
3659 4622 0.253044 TCCCCAGCTGCACTAATGAC 59.747 55.000 8.66 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.481871 GTGGGATAGAAGGACCGACA 58.518 55.000 0.00 0.00 33.71 4.35
20 21 2.040178 GTGGGATAGAAGGACCGACAT 58.960 52.381 0.00 0.00 33.71 3.06
21 22 2.039418 TGGGATAGAAGGACCGACATG 58.961 52.381 0.00 0.00 0.00 3.21
22 23 1.270358 GGGATAGAAGGACCGACATGC 60.270 57.143 0.00 0.00 0.00 4.06
23 24 1.603172 GGATAGAAGGACCGACATGCG 60.603 57.143 0.00 0.00 40.47 4.73
24 25 1.337071 GATAGAAGGACCGACATGCGA 59.663 52.381 10.48 0.00 44.57 5.10
25 26 1.179152 TAGAAGGACCGACATGCGAA 58.821 50.000 10.48 0.00 44.57 4.70
26 27 0.320374 AGAAGGACCGACATGCGAAA 59.680 50.000 10.48 0.00 44.57 3.46
27 28 0.442699 GAAGGACCGACATGCGAAAC 59.557 55.000 10.48 1.66 44.57 2.78
28 29 0.953960 AAGGACCGACATGCGAAACC 60.954 55.000 10.48 9.88 44.57 3.27
29 30 2.396157 GGACCGACATGCGAAACCC 61.396 63.158 10.48 3.54 44.57 4.11
30 31 2.359478 ACCGACATGCGAAACCCC 60.359 61.111 10.48 0.00 44.57 4.95
31 32 2.359354 CCGACATGCGAAACCCCA 60.359 61.111 10.48 0.00 44.57 4.96
32 33 1.969064 CCGACATGCGAAACCCCAA 60.969 57.895 10.48 0.00 44.57 4.12
33 34 1.312371 CCGACATGCGAAACCCCAAT 61.312 55.000 10.48 0.00 44.57 3.16
34 35 1.374560 CGACATGCGAAACCCCAATA 58.625 50.000 3.85 0.00 44.57 1.90
35 36 1.330521 CGACATGCGAAACCCCAATAG 59.669 52.381 3.85 0.00 44.57 1.73
36 37 2.639065 GACATGCGAAACCCCAATAGA 58.361 47.619 0.00 0.00 0.00 1.98
37 38 2.354821 GACATGCGAAACCCCAATAGAC 59.645 50.000 0.00 0.00 0.00 2.59
38 39 1.330521 CATGCGAAACCCCAATAGACG 59.669 52.381 0.00 0.00 0.00 4.18
39 40 0.609151 TGCGAAACCCCAATAGACGA 59.391 50.000 0.00 0.00 0.00 4.20
40 41 1.287425 GCGAAACCCCAATAGACGAG 58.713 55.000 0.00 0.00 0.00 4.18
41 42 1.287425 CGAAACCCCAATAGACGAGC 58.713 55.000 0.00 0.00 0.00 5.03
42 43 1.287425 GAAACCCCAATAGACGAGCG 58.713 55.000 0.00 0.00 0.00 5.03
43 44 0.899720 AAACCCCAATAGACGAGCGA 59.100 50.000 0.00 0.00 0.00 4.93
44 45 1.120530 AACCCCAATAGACGAGCGAT 58.879 50.000 0.00 0.00 0.00 4.58
45 46 0.389391 ACCCCAATAGACGAGCGATG 59.611 55.000 0.00 0.00 0.00 3.84
46 47 0.319900 CCCCAATAGACGAGCGATGG 60.320 60.000 0.00 0.00 0.00 3.51
47 48 0.946221 CCCAATAGACGAGCGATGGC 60.946 60.000 0.00 0.00 40.37 4.40
48 49 0.946221 CCAATAGACGAGCGATGGCC 60.946 60.000 0.00 0.00 41.24 5.36
49 50 0.032678 CAATAGACGAGCGATGGCCT 59.967 55.000 3.32 0.00 41.24 5.19
50 51 0.315568 AATAGACGAGCGATGGCCTC 59.684 55.000 3.32 0.00 41.24 4.70
51 52 1.528292 ATAGACGAGCGATGGCCTCC 61.528 60.000 3.32 0.00 41.24 4.30
52 53 4.593864 GACGAGCGATGGCCTCCC 62.594 72.222 3.32 0.00 41.24 4.30
54 55 4.292178 CGAGCGATGGCCTCCCTC 62.292 72.222 3.32 5.61 41.24 4.30
55 56 3.157252 GAGCGATGGCCTCCCTCA 61.157 66.667 3.32 0.00 41.24 3.86
56 57 3.453070 GAGCGATGGCCTCCCTCAC 62.453 68.421 3.32 0.00 41.24 3.51
57 58 4.554036 GCGATGGCCTCCCTCACC 62.554 72.222 3.32 0.00 0.00 4.02
58 59 3.083349 CGATGGCCTCCCTCACCA 61.083 66.667 3.32 0.00 37.99 4.17
59 60 2.446848 CGATGGCCTCCCTCACCAT 61.447 63.158 3.32 0.00 46.82 3.55
60 61 1.150081 GATGGCCTCCCTCACCATG 59.850 63.158 3.32 0.00 44.20 3.66
61 62 2.972892 GATGGCCTCCCTCACCATGC 62.973 65.000 3.32 0.00 44.20 4.06
62 63 3.415087 GGCCTCCCTCACCATGCT 61.415 66.667 0.00 0.00 0.00 3.79
63 64 2.191641 GCCTCCCTCACCATGCTC 59.808 66.667 0.00 0.00 0.00 4.26
64 65 2.503061 CCTCCCTCACCATGCTCG 59.497 66.667 0.00 0.00 0.00 5.03
65 66 2.362369 CCTCCCTCACCATGCTCGT 61.362 63.158 0.00 0.00 0.00 4.18
66 67 1.142748 CTCCCTCACCATGCTCGTC 59.857 63.158 0.00 0.00 0.00 4.20
67 68 1.305297 TCCCTCACCATGCTCGTCT 60.305 57.895 0.00 0.00 0.00 4.18
68 69 1.142748 CCCTCACCATGCTCGTCTC 59.857 63.158 0.00 0.00 0.00 3.36
69 70 1.326213 CCCTCACCATGCTCGTCTCT 61.326 60.000 0.00 0.00 0.00 3.10
70 71 0.534412 CCTCACCATGCTCGTCTCTT 59.466 55.000 0.00 0.00 0.00 2.85
71 72 1.638133 CTCACCATGCTCGTCTCTTG 58.362 55.000 0.00 0.00 0.00 3.02
72 73 1.203287 CTCACCATGCTCGTCTCTTGA 59.797 52.381 0.00 0.00 0.00 3.02
73 74 1.618343 TCACCATGCTCGTCTCTTGAA 59.382 47.619 0.00 0.00 0.00 2.69
74 75 1.728971 CACCATGCTCGTCTCTTGAAC 59.271 52.381 0.00 0.00 0.00 3.18
75 76 1.620819 ACCATGCTCGTCTCTTGAACT 59.379 47.619 0.00 0.00 0.00 3.01
76 77 2.826128 ACCATGCTCGTCTCTTGAACTA 59.174 45.455 0.00 0.00 0.00 2.24
77 78 3.449018 ACCATGCTCGTCTCTTGAACTAT 59.551 43.478 0.00 0.00 0.00 2.12
78 79 4.081420 ACCATGCTCGTCTCTTGAACTATT 60.081 41.667 0.00 0.00 0.00 1.73
79 80 4.872691 CCATGCTCGTCTCTTGAACTATTT 59.127 41.667 0.00 0.00 0.00 1.40
80 81 5.220548 CCATGCTCGTCTCTTGAACTATTTG 60.221 44.000 0.00 0.00 0.00 2.32
81 82 4.245660 TGCTCGTCTCTTGAACTATTTGG 58.754 43.478 0.00 0.00 0.00 3.28
82 83 4.021456 TGCTCGTCTCTTGAACTATTTGGA 60.021 41.667 0.00 0.00 0.00 3.53
83 84 4.929808 GCTCGTCTCTTGAACTATTTGGAA 59.070 41.667 0.00 0.00 0.00 3.53
84 85 5.163943 GCTCGTCTCTTGAACTATTTGGAAC 60.164 44.000 0.00 0.00 0.00 3.62
85 86 4.921515 TCGTCTCTTGAACTATTTGGAACG 59.078 41.667 0.00 0.00 0.00 3.95
86 87 4.921515 CGTCTCTTGAACTATTTGGAACGA 59.078 41.667 0.00 0.00 0.00 3.85
87 88 5.061064 CGTCTCTTGAACTATTTGGAACGAG 59.939 44.000 0.00 0.00 0.00 4.18
88 89 6.157211 GTCTCTTGAACTATTTGGAACGAGA 58.843 40.000 0.00 0.00 0.00 4.04
89 90 6.309251 GTCTCTTGAACTATTTGGAACGAGAG 59.691 42.308 0.00 0.00 37.29 3.20
90 91 6.208797 TCTCTTGAACTATTTGGAACGAGAGA 59.791 38.462 0.00 0.00 40.39 3.10
91 92 6.755206 TCTTGAACTATTTGGAACGAGAGAA 58.245 36.000 0.00 0.00 0.00 2.87
92 93 7.214381 TCTTGAACTATTTGGAACGAGAGAAA 58.786 34.615 0.00 0.00 0.00 2.52
93 94 7.878127 TCTTGAACTATTTGGAACGAGAGAAAT 59.122 33.333 0.00 0.00 0.00 2.17
94 95 7.364522 TGAACTATTTGGAACGAGAGAAATG 57.635 36.000 0.00 0.00 0.00 2.32
95 96 5.803020 ACTATTTGGAACGAGAGAAATGC 57.197 39.130 0.00 0.00 0.00 3.56
96 97 3.747099 ATTTGGAACGAGAGAAATGCG 57.253 42.857 0.00 0.00 0.00 4.73
97 98 0.796312 TTGGAACGAGAGAAATGCGC 59.204 50.000 0.00 0.00 0.00 6.09
98 99 1.345176 GGAACGAGAGAAATGCGCG 59.655 57.895 0.00 0.00 0.00 6.86
99 100 1.345176 GAACGAGAGAAATGCGCGG 59.655 57.895 8.83 0.00 0.00 6.46
100 101 2.025359 GAACGAGAGAAATGCGCGGG 62.025 60.000 8.83 0.00 0.00 6.13
101 102 2.509336 CGAGAGAAATGCGCGGGT 60.509 61.111 8.83 0.00 0.00 5.28
102 103 2.802667 CGAGAGAAATGCGCGGGTG 61.803 63.158 8.83 0.00 0.00 4.61
103 104 1.741770 GAGAGAAATGCGCGGGTGT 60.742 57.895 8.83 0.00 0.00 4.16
104 105 1.298859 GAGAGAAATGCGCGGGTGTT 61.299 55.000 8.83 0.00 0.00 3.32
105 106 0.889186 AGAGAAATGCGCGGGTGTTT 60.889 50.000 8.83 2.68 0.00 2.83
106 107 0.454452 GAGAAATGCGCGGGTGTTTC 60.454 55.000 8.83 17.57 0.00 2.78
107 108 1.795962 GAAATGCGCGGGTGTTTCG 60.796 57.895 8.83 0.00 0.00 3.46
114 115 4.607024 CGGGTGTTTCGCAACAAG 57.393 55.556 1.20 0.00 44.72 3.16
115 116 2.018544 CGGGTGTTTCGCAACAAGA 58.981 52.632 1.20 0.00 44.72 3.02
116 117 0.041312 CGGGTGTTTCGCAACAAGAG 60.041 55.000 1.20 0.00 44.72 2.85
117 118 1.021968 GGGTGTTTCGCAACAAGAGT 58.978 50.000 1.20 0.00 44.72 3.24
118 119 1.268539 GGGTGTTTCGCAACAAGAGTG 60.269 52.381 1.20 0.00 44.72 3.51
119 120 1.466855 GTGTTTCGCAACAAGAGTGC 58.533 50.000 1.20 0.00 44.72 4.40
123 124 4.724697 CGCAACAAGAGTGCGCCG 62.725 66.667 4.18 0.00 44.91 6.46
125 126 4.389576 CAACAAGAGTGCGCCGCC 62.390 66.667 6.63 0.00 0.00 6.13
138 139 4.671569 CCGCCGCCTATCCTGCTC 62.672 72.222 0.00 0.00 0.00 4.26
139 140 4.671569 CGCCGCCTATCCTGCTCC 62.672 72.222 0.00 0.00 0.00 4.70
140 141 3.550431 GCCGCCTATCCTGCTCCA 61.550 66.667 0.00 0.00 0.00 3.86
141 142 3.106986 GCCGCCTATCCTGCTCCAA 62.107 63.158 0.00 0.00 0.00 3.53
142 143 1.526887 CCGCCTATCCTGCTCCAAA 59.473 57.895 0.00 0.00 0.00 3.28
143 144 0.107214 CCGCCTATCCTGCTCCAAAA 60.107 55.000 0.00 0.00 0.00 2.44
144 145 1.477558 CCGCCTATCCTGCTCCAAAAT 60.478 52.381 0.00 0.00 0.00 1.82
145 146 2.224523 CCGCCTATCCTGCTCCAAAATA 60.225 50.000 0.00 0.00 0.00 1.40
146 147 3.560025 CCGCCTATCCTGCTCCAAAATAT 60.560 47.826 0.00 0.00 0.00 1.28
147 148 3.686726 CGCCTATCCTGCTCCAAAATATC 59.313 47.826 0.00 0.00 0.00 1.63
148 149 3.686726 GCCTATCCTGCTCCAAAATATCG 59.313 47.826 0.00 0.00 0.00 2.92
149 150 4.804261 GCCTATCCTGCTCCAAAATATCGT 60.804 45.833 0.00 0.00 0.00 3.73
150 151 5.568825 GCCTATCCTGCTCCAAAATATCGTA 60.569 44.000 0.00 0.00 0.00 3.43
151 152 5.869888 CCTATCCTGCTCCAAAATATCGTAC 59.130 44.000 0.00 0.00 0.00 3.67
152 153 5.552870 ATCCTGCTCCAAAATATCGTACT 57.447 39.130 0.00 0.00 0.00 2.73
153 154 4.945246 TCCTGCTCCAAAATATCGTACTC 58.055 43.478 0.00 0.00 0.00 2.59
154 155 3.736252 CCTGCTCCAAAATATCGTACTCG 59.264 47.826 0.00 0.00 38.55 4.18
167 168 3.766151 TCGTACTCGAGGCAAAACTATG 58.234 45.455 18.41 3.74 41.35 2.23
168 169 2.858344 CGTACTCGAGGCAAAACTATGG 59.142 50.000 18.41 0.00 39.71 2.74
169 170 2.403252 ACTCGAGGCAAAACTATGGG 57.597 50.000 18.41 0.00 0.00 4.00
170 171 1.628846 ACTCGAGGCAAAACTATGGGT 59.371 47.619 18.41 0.00 0.00 4.51
171 172 2.039879 ACTCGAGGCAAAACTATGGGTT 59.960 45.455 18.41 0.00 40.28 4.11
172 173 3.262405 ACTCGAGGCAAAACTATGGGTTA 59.738 43.478 18.41 0.00 37.12 2.85
173 174 3.602483 TCGAGGCAAAACTATGGGTTAC 58.398 45.455 0.00 0.00 37.12 2.50
174 175 2.350498 CGAGGCAAAACTATGGGTTACG 59.650 50.000 0.00 0.00 37.12 3.18
175 176 2.681344 GAGGCAAAACTATGGGTTACGG 59.319 50.000 0.00 0.00 37.12 4.02
176 177 1.133598 GGCAAAACTATGGGTTACGGC 59.866 52.381 0.00 0.00 37.12 5.68
177 178 1.813786 GCAAAACTATGGGTTACGGCA 59.186 47.619 0.00 0.00 37.12 5.69
178 179 2.159435 GCAAAACTATGGGTTACGGCAG 60.159 50.000 0.00 0.00 37.12 4.85
179 180 2.413310 AAACTATGGGTTACGGCAGG 57.587 50.000 0.00 0.00 37.12 4.85
180 181 1.282382 AACTATGGGTTACGGCAGGT 58.718 50.000 0.00 0.00 36.23 4.00
181 182 0.539986 ACTATGGGTTACGGCAGGTG 59.460 55.000 0.00 0.00 0.00 4.00
182 183 0.814010 CTATGGGTTACGGCAGGTGC 60.814 60.000 0.00 0.00 41.14 5.01
183 184 1.268992 TATGGGTTACGGCAGGTGCT 61.269 55.000 1.26 0.00 41.70 4.40
184 185 1.268992 ATGGGTTACGGCAGGTGCTA 61.269 55.000 1.26 0.00 41.70 3.49
185 186 1.297364 GGGTTACGGCAGGTGCTAA 59.703 57.895 1.26 0.00 41.70 3.09
186 187 0.743345 GGGTTACGGCAGGTGCTAAG 60.743 60.000 1.26 0.00 41.70 2.18
187 188 0.248289 GGTTACGGCAGGTGCTAAGA 59.752 55.000 1.26 0.00 41.70 2.10
188 189 1.338389 GGTTACGGCAGGTGCTAAGAA 60.338 52.381 1.26 0.00 41.70 2.52
189 190 2.419667 GTTACGGCAGGTGCTAAGAAA 58.580 47.619 1.26 0.00 41.70 2.52
190 191 2.088950 TACGGCAGGTGCTAAGAAAC 57.911 50.000 1.26 0.00 41.70 2.78
191 192 0.396811 ACGGCAGGTGCTAAGAAACT 59.603 50.000 1.26 0.00 41.70 2.66
192 193 1.621814 ACGGCAGGTGCTAAGAAACTA 59.378 47.619 1.26 0.00 41.70 2.24
193 194 2.271800 CGGCAGGTGCTAAGAAACTAG 58.728 52.381 1.26 0.00 41.70 2.57
194 195 2.633488 GGCAGGTGCTAAGAAACTAGG 58.367 52.381 1.26 0.00 41.70 3.02
195 196 2.633488 GCAGGTGCTAAGAAACTAGGG 58.367 52.381 0.00 0.00 38.21 3.53
196 197 2.633488 CAGGTGCTAAGAAACTAGGGC 58.367 52.381 0.00 0.00 0.00 5.19
197 198 1.207329 AGGTGCTAAGAAACTAGGGCG 59.793 52.381 0.00 0.00 0.00 6.13
198 199 1.066358 GGTGCTAAGAAACTAGGGCGT 60.066 52.381 0.00 0.00 0.00 5.68
199 200 2.167075 GGTGCTAAGAAACTAGGGCGTA 59.833 50.000 0.00 0.00 0.00 4.42
200 201 3.181468 GGTGCTAAGAAACTAGGGCGTAT 60.181 47.826 0.00 0.00 0.00 3.06
201 202 4.439968 GTGCTAAGAAACTAGGGCGTATT 58.560 43.478 0.00 0.00 0.00 1.89
202 203 4.270325 GTGCTAAGAAACTAGGGCGTATTG 59.730 45.833 0.00 0.00 0.00 1.90
203 204 4.081309 TGCTAAGAAACTAGGGCGTATTGT 60.081 41.667 0.00 0.00 0.00 2.71
204 205 4.874396 GCTAAGAAACTAGGGCGTATTGTT 59.126 41.667 0.00 0.00 0.00 2.83
205 206 5.220605 GCTAAGAAACTAGGGCGTATTGTTG 60.221 44.000 0.00 0.00 0.00 3.33
206 207 4.281898 AGAAACTAGGGCGTATTGTTGT 57.718 40.909 0.00 0.00 0.00 3.32
207 208 5.410355 AGAAACTAGGGCGTATTGTTGTA 57.590 39.130 0.00 0.00 0.00 2.41
208 209 5.173664 AGAAACTAGGGCGTATTGTTGTAC 58.826 41.667 0.00 0.00 0.00 2.90
226 227 1.668419 ACGAGAGTAATTGCCATGCC 58.332 50.000 0.00 0.00 46.88 4.40
227 228 1.210478 ACGAGAGTAATTGCCATGCCT 59.790 47.619 0.00 0.00 46.88 4.75
228 229 2.292267 CGAGAGTAATTGCCATGCCTT 58.708 47.619 0.00 0.00 0.00 4.35
229 230 2.684881 CGAGAGTAATTGCCATGCCTTT 59.315 45.455 0.00 0.00 0.00 3.11
230 231 3.129287 CGAGAGTAATTGCCATGCCTTTT 59.871 43.478 0.00 0.00 0.00 2.27
231 232 4.380867 CGAGAGTAATTGCCATGCCTTTTT 60.381 41.667 0.00 0.00 0.00 1.94
232 233 4.824289 AGAGTAATTGCCATGCCTTTTTG 58.176 39.130 0.00 0.00 0.00 2.44
233 234 3.337358 AGTAATTGCCATGCCTTTTTGC 58.663 40.909 0.00 0.00 0.00 3.68
234 235 2.273538 AATTGCCATGCCTTTTTGCA 57.726 40.000 0.00 0.00 46.94 4.08
235 236 2.273538 ATTGCCATGCCTTTTTGCAA 57.726 40.000 0.00 0.00 45.84 4.08
236 237 1.595466 TTGCCATGCCTTTTTGCAAG 58.405 45.000 0.00 0.00 45.84 4.01
238 239 3.236604 CCATGCCTTTTTGCAAGGG 57.763 52.632 5.09 7.74 44.35 3.95
241 242 3.043713 GCCTTTTTGCAAGGGCGC 61.044 61.111 19.19 0.00 44.62 6.53
242 243 2.736531 CCTTTTTGCAAGGGCGCT 59.263 55.556 7.64 0.00 45.35 5.92
243 244 1.069596 CCTTTTTGCAAGGGCGCTT 59.930 52.632 10.73 10.73 45.35 4.68
244 245 1.223417 CCTTTTTGCAAGGGCGCTTG 61.223 55.000 32.71 32.71 45.35 4.01
245 246 0.530431 CTTTTTGCAAGGGCGCTTGT 60.530 50.000 35.16 7.26 45.35 3.16
246 247 0.747255 TTTTTGCAAGGGCGCTTGTA 59.253 45.000 35.16 31.05 45.35 2.41
247 248 0.747255 TTTTGCAAGGGCGCTTGTAA 59.253 45.000 32.79 32.79 45.35 2.41
248 249 0.747255 TTTGCAAGGGCGCTTGTAAA 59.253 45.000 37.64 37.64 43.13 2.01
249 250 0.747255 TTGCAAGGGCGCTTGTAAAA 59.253 45.000 33.78 25.38 45.35 1.52
250 251 0.747255 TGCAAGGGCGCTTGTAAAAA 59.253 45.000 35.16 18.53 45.35 1.94
251 252 1.136690 GCAAGGGCGCTTGTAAAAAC 58.863 50.000 35.16 19.35 36.74 2.43
252 253 1.269569 GCAAGGGCGCTTGTAAAAACT 60.270 47.619 35.16 2.76 36.74 2.66
253 254 2.661594 CAAGGGCGCTTGTAAAAACTC 58.338 47.619 29.80 0.00 0.00 3.01
254 255 2.271944 AGGGCGCTTGTAAAAACTCT 57.728 45.000 7.64 0.00 0.00 3.24
255 256 3.412237 AGGGCGCTTGTAAAAACTCTA 57.588 42.857 7.64 0.00 0.00 2.43
256 257 3.746940 AGGGCGCTTGTAAAAACTCTAA 58.253 40.909 7.64 0.00 0.00 2.10
257 258 4.139038 AGGGCGCTTGTAAAAACTCTAAA 58.861 39.130 7.64 0.00 0.00 1.85
258 259 4.023450 AGGGCGCTTGTAAAAACTCTAAAC 60.023 41.667 7.64 0.00 0.00 2.01
259 260 4.023450 GGGCGCTTGTAAAAACTCTAAACT 60.023 41.667 7.64 0.00 0.00 2.66
260 261 5.145059 GGCGCTTGTAAAAACTCTAAACTC 58.855 41.667 7.64 0.00 0.00 3.01
261 262 5.049612 GGCGCTTGTAAAAACTCTAAACTCT 60.050 40.000 7.64 0.00 0.00 3.24
262 263 6.146673 GGCGCTTGTAAAAACTCTAAACTCTA 59.853 38.462 7.64 0.00 0.00 2.43
263 264 7.148457 GGCGCTTGTAAAAACTCTAAACTCTAT 60.148 37.037 7.64 0.00 0.00 1.98
264 265 8.228464 GCGCTTGTAAAAACTCTAAACTCTATT 58.772 33.333 0.00 0.00 0.00 1.73
265 266 9.742552 CGCTTGTAAAAACTCTAAACTCTATTC 57.257 33.333 0.00 0.00 0.00 1.75
289 290 8.553085 TCTCCTCTTATTTAATGGATGAGACA 57.447 34.615 10.71 0.00 29.36 3.41
290 291 8.992349 TCTCCTCTTATTTAATGGATGAGACAA 58.008 33.333 10.71 0.00 29.36 3.18
291 292 9.618890 CTCCTCTTATTTAATGGATGAGACAAA 57.381 33.333 8.21 0.00 0.00 2.83
299 300 8.761575 TTTAATGGATGAGACAAATCTTTTGC 57.238 30.769 0.06 0.00 34.34 3.68
300 301 4.789012 TGGATGAGACAAATCTTTTGCC 57.211 40.909 0.06 0.00 34.34 4.52
301 302 4.410099 TGGATGAGACAAATCTTTTGCCT 58.590 39.130 0.06 0.00 34.34 4.75
302 303 4.460382 TGGATGAGACAAATCTTTTGCCTC 59.540 41.667 8.73 8.73 34.34 4.70
303 304 4.142293 GGATGAGACAAATCTTTTGCCTCC 60.142 45.833 11.94 3.74 34.34 4.30
304 305 2.813754 TGAGACAAATCTTTTGCCTCCG 59.186 45.455 11.94 0.00 34.34 4.63
305 306 2.814336 GAGACAAATCTTTTGCCTCCGT 59.186 45.455 5.34 0.00 34.34 4.69
306 307 3.222603 AGACAAATCTTTTGCCTCCGTT 58.777 40.909 0.06 0.00 0.00 4.44
307 308 3.636764 AGACAAATCTTTTGCCTCCGTTT 59.363 39.130 0.06 0.00 0.00 3.60
308 309 3.977427 ACAAATCTTTTGCCTCCGTTTC 58.023 40.909 0.06 0.00 0.00 2.78
309 310 2.979813 CAAATCTTTTGCCTCCGTTTCG 59.020 45.455 0.00 0.00 0.00 3.46
310 311 2.178912 ATCTTTTGCCTCCGTTTCGA 57.821 45.000 0.00 0.00 0.00 3.71
311 312 1.956297 TCTTTTGCCTCCGTTTCGAA 58.044 45.000 0.00 0.00 0.00 3.71
312 313 2.290464 TCTTTTGCCTCCGTTTCGAAA 58.710 42.857 6.47 6.47 0.00 3.46
313 314 2.683867 TCTTTTGCCTCCGTTTCGAAAA 59.316 40.909 13.10 0.00 0.00 2.29
314 315 3.128938 TCTTTTGCCTCCGTTTCGAAAAA 59.871 39.130 13.10 0.00 0.00 1.94
352 353 0.173481 TGCGTGGCTAGCTAGACAAG 59.827 55.000 31.31 31.31 44.25 3.16
455 456 1.481871 CCAGCCATGCATCTTCCTTT 58.518 50.000 0.00 0.00 0.00 3.11
476 480 2.612251 CCTCCCCTCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
666 684 0.184933 CCTCCTCCCTCTCGTCTCAT 59.815 60.000 0.00 0.00 0.00 2.90
667 685 1.604604 CTCCTCCCTCTCGTCTCATC 58.395 60.000 0.00 0.00 0.00 2.92
712 730 2.740981 CTCTGTAGCAGCTCACAAAAGG 59.259 50.000 0.00 0.00 0.00 3.11
742 760 0.550393 ACCCTTTCTTCCCTCCTCCC 60.550 60.000 0.00 0.00 0.00 4.30
743 761 0.253394 CCCTTTCTTCCCTCCTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
744 762 1.208706 CCTTTCTTCCCTCCTCCCTC 58.791 60.000 0.00 0.00 0.00 4.30
745 763 1.208706 CTTTCTTCCCTCCTCCCTCC 58.791 60.000 0.00 0.00 0.00 4.30
797 1119 2.814183 TTCCTTCCGAACGCTCGCTC 62.814 60.000 1.91 0.00 44.04 5.03
798 1120 2.179517 CTTCCGAACGCTCGCTCT 59.820 61.111 1.91 0.00 44.04 4.09
799 1121 1.444553 CTTCCGAACGCTCGCTCTT 60.445 57.895 1.91 0.00 44.04 2.85
805 1127 1.415374 GAACGCTCGCTCTTGTTGTA 58.585 50.000 0.00 0.00 0.00 2.41
838 1162 1.705997 CCCCCTTCCTCCCATTACCG 61.706 65.000 0.00 0.00 0.00 4.02
975 1306 4.503714 TTCTCTCTCTCTCTCCTCTTCC 57.496 50.000 0.00 0.00 0.00 3.46
1183 1545 0.392461 TAGTTCGGCAATGGTGGAGC 60.392 55.000 0.00 0.00 0.00 4.70
1194 1556 2.973694 TGGTGGAGCGGAAATACTAC 57.026 50.000 0.00 0.00 0.00 2.73
1196 1558 3.634504 TGGTGGAGCGGAAATACTACTA 58.365 45.455 0.00 0.00 0.00 1.82
1197 1559 3.635373 TGGTGGAGCGGAAATACTACTAG 59.365 47.826 0.00 0.00 0.00 2.57
1198 1560 3.005578 GGTGGAGCGGAAATACTACTAGG 59.994 52.174 0.00 0.00 0.00 3.02
1211 1573 3.768878 ACTACTAGGAGCACTGACACTT 58.231 45.455 0.36 0.00 0.00 3.16
1212 1574 4.919793 ACTACTAGGAGCACTGACACTTA 58.080 43.478 0.36 0.00 0.00 2.24
1213 1575 4.944930 ACTACTAGGAGCACTGACACTTAG 59.055 45.833 0.36 0.00 0.00 2.18
1214 1576 3.093057 ACTAGGAGCACTGACACTTAGG 58.907 50.000 0.00 0.00 0.00 2.69
1219 1581 2.234908 GAGCACTGACACTTAGGGATGT 59.765 50.000 0.00 0.00 0.00 3.06
1228 1590 0.664761 CTTAGGGATGTTGCATGCGG 59.335 55.000 14.09 0.00 0.00 5.69
1646 2008 2.064014 CGTCTTCTCCCGGTAAACAAC 58.936 52.381 0.00 0.00 0.00 3.32
1685 2049 3.979497 CCCACCACCCCTCCAACC 61.979 72.222 0.00 0.00 0.00 3.77
1690 2054 2.683475 CACCCCTCCAACCCATCC 59.317 66.667 0.00 0.00 0.00 3.51
1717 2081 6.814146 ACGCCATTTTCTTTCTTTACAACAAA 59.186 30.769 0.00 0.00 0.00 2.83
1976 2368 2.340809 CGCACACCTCCGTTGGTA 59.659 61.111 0.00 0.00 38.45 3.25
2059 2455 1.185315 GGCAGCAGCTCCCATTTAAA 58.815 50.000 0.00 0.00 41.70 1.52
2142 2541 1.952367 GCTACCTGACAATTGCTGCCT 60.952 52.381 5.05 0.00 0.00 4.75
2143 2542 2.680805 GCTACCTGACAATTGCTGCCTA 60.681 50.000 5.05 0.00 0.00 3.93
2144 2543 1.826385 ACCTGACAATTGCTGCCTAC 58.174 50.000 5.05 0.00 0.00 3.18
2145 2544 1.352352 ACCTGACAATTGCTGCCTACT 59.648 47.619 5.05 0.00 0.00 2.57
2146 2545 2.571653 ACCTGACAATTGCTGCCTACTA 59.428 45.455 5.05 0.00 0.00 1.82
2147 2546 3.201290 CCTGACAATTGCTGCCTACTAG 58.799 50.000 5.05 0.00 0.00 2.57
2186 2585 3.555956 CGCCCTGGATCGCAATATAATAC 59.444 47.826 0.00 0.00 0.00 1.89
2187 2586 4.680708 CGCCCTGGATCGCAATATAATACT 60.681 45.833 0.00 0.00 0.00 2.12
2188 2587 5.451381 CGCCCTGGATCGCAATATAATACTA 60.451 44.000 0.00 0.00 0.00 1.82
2220 2619 0.250858 TCACAAGTCATGGCACTGGG 60.251 55.000 0.00 0.00 0.00 4.45
2223 2622 3.590466 AAGTCATGGCACTGGGGGC 62.590 63.158 0.00 0.00 0.00 5.80
2324 3281 5.120830 GCAATAAAGTCTCTTTTCTCGCTCA 59.879 40.000 0.15 0.00 0.00 4.26
2329 3286 1.880675 TCTCTTTTCTCGCTCACTCGT 59.119 47.619 0.00 0.00 0.00 4.18
2330 3287 2.293677 TCTCTTTTCTCGCTCACTCGTT 59.706 45.455 0.00 0.00 0.00 3.85
2331 3288 3.501062 TCTCTTTTCTCGCTCACTCGTTA 59.499 43.478 0.00 0.00 0.00 3.18
2332 3289 3.822996 TCTTTTCTCGCTCACTCGTTAG 58.177 45.455 0.00 0.00 0.00 2.34
2333 3290 1.978542 TTTCTCGCTCACTCGTTAGC 58.021 50.000 0.00 0.00 35.33 3.09
2334 3291 1.166129 TTCTCGCTCACTCGTTAGCT 58.834 50.000 0.00 0.00 36.56 3.32
2335 3292 0.727970 TCTCGCTCACTCGTTAGCTC 59.272 55.000 0.00 0.00 36.56 4.09
2336 3293 0.587737 CTCGCTCACTCGTTAGCTCG 60.588 60.000 0.00 0.00 36.56 5.03
2362 3320 7.406031 TGTTGGTATCTTCAGTCTTACTAGG 57.594 40.000 0.00 0.00 0.00 3.02
2463 3423 2.559231 CCGGCCCTCTCTCTAACTAATC 59.441 54.545 0.00 0.00 0.00 1.75
2471 3431 1.679680 TCTCTAACTAATCGGTGGGCG 59.320 52.381 0.00 0.00 0.00 6.13
2981 3944 3.485431 CTTCTGCAGCGGCGACAG 61.485 66.667 12.98 14.87 45.35 3.51
3420 4383 0.749818 AACACGCCACAATGGACACA 60.750 50.000 0.00 0.00 40.96 3.72
3558 4521 4.003648 GTGTTTTGGGTCTTCTGATCGAT 58.996 43.478 0.00 0.00 0.00 3.59
3589 4552 0.598065 AAAAAGCTAAGCACGGCTGG 59.402 50.000 0.00 0.00 39.62 4.85
3659 4622 2.995258 CCCGTTGGATTTTGCTGAAATG 59.005 45.455 3.81 0.00 38.06 2.32
3817 4780 6.541111 ACACTATTTTTCTCGGACAAACTC 57.459 37.500 0.00 0.00 0.00 3.01
3887 4852 0.452122 CCGAATTGCAAACGTCGACC 60.452 55.000 23.98 0.00 38.55 4.79
3888 4853 0.452122 CGAATTGCAAACGTCGACCC 60.452 55.000 19.89 0.00 38.55 4.46
3889 4854 0.109919 GAATTGCAAACGTCGACCCC 60.110 55.000 10.58 0.00 0.00 4.95
3890 4855 1.847890 AATTGCAAACGTCGACCCCG 61.848 55.000 10.58 0.40 37.07 5.73
3893 4858 2.968156 CAAACGTCGACCCCGCAA 60.968 61.111 10.58 0.00 35.37 4.85
3894 4859 2.203042 AAACGTCGACCCCGCAAA 60.203 55.556 10.58 0.00 35.37 3.68
3895 4860 1.818785 AAACGTCGACCCCGCAAAA 60.819 52.632 10.58 0.00 35.37 2.44
3896 4861 1.375098 AAACGTCGACCCCGCAAAAA 61.375 50.000 10.58 0.00 35.37 1.94
4004 4969 8.824159 ACATCTGACGAAGATAAATCCATAAG 57.176 34.615 5.30 0.00 44.24 1.73
4065 5030 5.648092 GGGTGTAAATGTGAGCACTAAATCT 59.352 40.000 1.99 0.00 32.90 2.40
4083 5048 5.913137 AATCTAAATGGACCGCAATTCAA 57.087 34.783 0.00 0.00 0.00 2.69
4124 5089 1.028905 CGGTCACCAAACCATTGTGT 58.971 50.000 0.00 0.00 39.43 3.72
4224 5190 6.183359 GCATTAAGCACAACAAAGTTGTATCG 60.183 38.462 14.39 5.12 41.38 2.92
4231 5197 8.941977 AGCACAACAAAGTTGTATCGATAATAA 58.058 29.630 14.39 3.08 41.31 1.40
4316 5282 5.424573 TGGCATCACAAAATTCCAATCCATA 59.575 36.000 0.00 0.00 0.00 2.74
4391 5359 4.741928 AAGGAGAAGGGTTTGGTAATGT 57.258 40.909 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.481871 TGTCGGTCCTTCTATCCCAC 58.518 55.000 0.00 0.00 0.00 4.61
1 2 2.039418 CATGTCGGTCCTTCTATCCCA 58.961 52.381 0.00 0.00 0.00 4.37
2 3 1.270358 GCATGTCGGTCCTTCTATCCC 60.270 57.143 0.00 0.00 0.00 3.85
3 4 1.603172 CGCATGTCGGTCCTTCTATCC 60.603 57.143 0.00 0.00 33.78 2.59
4 5 1.337071 TCGCATGTCGGTCCTTCTATC 59.663 52.381 9.16 0.00 39.05 2.08
5 6 1.399714 TCGCATGTCGGTCCTTCTAT 58.600 50.000 9.16 0.00 39.05 1.98
6 7 1.179152 TTCGCATGTCGGTCCTTCTA 58.821 50.000 9.16 0.00 39.05 2.10
7 8 0.320374 TTTCGCATGTCGGTCCTTCT 59.680 50.000 9.16 0.00 39.05 2.85
8 9 0.442699 GTTTCGCATGTCGGTCCTTC 59.557 55.000 9.16 0.00 39.05 3.46
9 10 0.953960 GGTTTCGCATGTCGGTCCTT 60.954 55.000 9.16 0.00 39.05 3.36
10 11 1.375523 GGTTTCGCATGTCGGTCCT 60.376 57.895 9.16 0.00 39.05 3.85
11 12 2.396157 GGGTTTCGCATGTCGGTCC 61.396 63.158 9.16 8.82 39.05 4.46
12 13 2.396157 GGGGTTTCGCATGTCGGTC 61.396 63.158 9.16 2.07 39.05 4.79
13 14 2.359478 GGGGTTTCGCATGTCGGT 60.359 61.111 9.16 0.00 39.05 4.69
14 15 1.312371 ATTGGGGTTTCGCATGTCGG 61.312 55.000 9.16 0.00 39.05 4.79
15 16 1.330521 CTATTGGGGTTTCGCATGTCG 59.669 52.381 0.00 0.00 35.72 4.35
16 17 2.354821 GTCTATTGGGGTTTCGCATGTC 59.645 50.000 0.00 0.00 35.72 3.06
17 18 2.365582 GTCTATTGGGGTTTCGCATGT 58.634 47.619 0.00 0.00 35.72 3.21
18 19 1.330521 CGTCTATTGGGGTTTCGCATG 59.669 52.381 0.00 0.00 35.72 4.06
19 20 1.208535 TCGTCTATTGGGGTTTCGCAT 59.791 47.619 0.00 0.00 35.72 4.73
20 21 0.609151 TCGTCTATTGGGGTTTCGCA 59.391 50.000 0.00 0.00 0.00 5.10
21 22 1.287425 CTCGTCTATTGGGGTTTCGC 58.713 55.000 0.00 0.00 0.00 4.70
22 23 1.287425 GCTCGTCTATTGGGGTTTCG 58.713 55.000 0.00 0.00 0.00 3.46
23 24 1.134907 TCGCTCGTCTATTGGGGTTTC 60.135 52.381 0.00 0.00 0.00 2.78
24 25 0.899720 TCGCTCGTCTATTGGGGTTT 59.100 50.000 0.00 0.00 0.00 3.27
25 26 1.120530 ATCGCTCGTCTATTGGGGTT 58.879 50.000 0.00 0.00 0.00 4.11
26 27 0.389391 CATCGCTCGTCTATTGGGGT 59.611 55.000 0.00 0.00 0.00 4.95
27 28 0.319900 CCATCGCTCGTCTATTGGGG 60.320 60.000 0.00 0.00 0.00 4.96
28 29 0.946221 GCCATCGCTCGTCTATTGGG 60.946 60.000 0.00 0.00 0.00 4.12
29 30 0.946221 GGCCATCGCTCGTCTATTGG 60.946 60.000 0.00 0.00 34.44 3.16
30 31 0.032678 AGGCCATCGCTCGTCTATTG 59.967 55.000 5.01 0.00 34.44 1.90
31 32 0.315568 GAGGCCATCGCTCGTCTATT 59.684 55.000 5.01 0.00 34.44 1.73
32 33 1.528292 GGAGGCCATCGCTCGTCTAT 61.528 60.000 5.01 0.00 34.44 1.98
33 34 2.194212 GGAGGCCATCGCTCGTCTA 61.194 63.158 5.01 0.00 34.44 2.59
34 35 3.532155 GGAGGCCATCGCTCGTCT 61.532 66.667 5.01 0.00 34.44 4.18
35 36 4.593864 GGGAGGCCATCGCTCGTC 62.594 72.222 5.01 0.00 37.86 4.20
40 41 4.554036 GGTGAGGGAGGCCATCGC 62.554 72.222 5.01 8.35 43.05 4.58
41 42 2.446848 ATGGTGAGGGAGGCCATCG 61.447 63.158 5.01 0.00 38.52 3.84
42 43 1.150081 CATGGTGAGGGAGGCCATC 59.850 63.158 5.01 0.00 40.68 3.51
43 44 3.065787 GCATGGTGAGGGAGGCCAT 62.066 63.158 5.01 0.00 43.14 4.40
44 45 3.731728 GCATGGTGAGGGAGGCCA 61.732 66.667 5.01 0.00 36.64 5.36
45 46 3.412624 GAGCATGGTGAGGGAGGCC 62.413 68.421 0.00 0.00 0.00 5.19
46 47 2.191641 GAGCATGGTGAGGGAGGC 59.808 66.667 0.00 0.00 0.00 4.70
47 48 2.303549 GACGAGCATGGTGAGGGAGG 62.304 65.000 0.00 0.00 0.00 4.30
48 49 1.142748 GACGAGCATGGTGAGGGAG 59.857 63.158 0.00 0.00 0.00 4.30
49 50 1.305297 AGACGAGCATGGTGAGGGA 60.305 57.895 0.00 0.00 0.00 4.20
50 51 1.142748 GAGACGAGCATGGTGAGGG 59.857 63.158 0.00 0.00 0.00 4.30
51 52 0.534412 AAGAGACGAGCATGGTGAGG 59.466 55.000 0.00 0.00 0.00 3.86
52 53 1.203287 TCAAGAGACGAGCATGGTGAG 59.797 52.381 0.00 0.00 0.00 3.51
53 54 1.256812 TCAAGAGACGAGCATGGTGA 58.743 50.000 0.00 0.00 0.00 4.02
54 55 1.728971 GTTCAAGAGACGAGCATGGTG 59.271 52.381 0.00 0.00 0.00 4.17
55 56 1.620819 AGTTCAAGAGACGAGCATGGT 59.379 47.619 0.00 0.00 0.00 3.55
56 57 2.376808 AGTTCAAGAGACGAGCATGG 57.623 50.000 0.00 0.00 0.00 3.66
57 58 5.220548 CCAAATAGTTCAAGAGACGAGCATG 60.221 44.000 0.00 0.00 0.00 4.06
58 59 4.872691 CCAAATAGTTCAAGAGACGAGCAT 59.127 41.667 0.00 0.00 0.00 3.79
59 60 4.021456 TCCAAATAGTTCAAGAGACGAGCA 60.021 41.667 0.00 0.00 0.00 4.26
60 61 4.495422 TCCAAATAGTTCAAGAGACGAGC 58.505 43.478 0.00 0.00 0.00 5.03
61 62 5.061064 CGTTCCAAATAGTTCAAGAGACGAG 59.939 44.000 0.00 0.00 0.00 4.18
62 63 4.921515 CGTTCCAAATAGTTCAAGAGACGA 59.078 41.667 0.00 0.00 0.00 4.20
63 64 4.921515 TCGTTCCAAATAGTTCAAGAGACG 59.078 41.667 0.00 0.00 0.00 4.18
64 65 6.157211 TCTCGTTCCAAATAGTTCAAGAGAC 58.843 40.000 0.00 0.00 0.00 3.36
65 66 6.208797 TCTCTCGTTCCAAATAGTTCAAGAGA 59.791 38.462 0.00 0.00 34.68 3.10
66 67 6.390721 TCTCTCGTTCCAAATAGTTCAAGAG 58.609 40.000 0.00 0.00 0.00 2.85
67 68 6.340962 TCTCTCGTTCCAAATAGTTCAAGA 57.659 37.500 0.00 0.00 0.00 3.02
68 69 7.421530 TTTCTCTCGTTCCAAATAGTTCAAG 57.578 36.000 0.00 0.00 0.00 3.02
69 70 7.573096 GCATTTCTCTCGTTCCAAATAGTTCAA 60.573 37.037 0.00 0.00 0.00 2.69
70 71 6.128282 GCATTTCTCTCGTTCCAAATAGTTCA 60.128 38.462 0.00 0.00 0.00 3.18
71 72 6.251549 GCATTTCTCTCGTTCCAAATAGTTC 58.748 40.000 0.00 0.00 0.00 3.01
72 73 5.163854 CGCATTTCTCTCGTTCCAAATAGTT 60.164 40.000 0.00 0.00 0.00 2.24
73 74 4.330074 CGCATTTCTCTCGTTCCAAATAGT 59.670 41.667 0.00 0.00 0.00 2.12
74 75 4.783450 GCGCATTTCTCTCGTTCCAAATAG 60.783 45.833 0.30 0.00 0.00 1.73
75 76 3.063452 GCGCATTTCTCTCGTTCCAAATA 59.937 43.478 0.30 0.00 0.00 1.40
76 77 2.159517 GCGCATTTCTCTCGTTCCAAAT 60.160 45.455 0.30 0.00 0.00 2.32
77 78 1.196808 GCGCATTTCTCTCGTTCCAAA 59.803 47.619 0.30 0.00 0.00 3.28
78 79 0.796312 GCGCATTTCTCTCGTTCCAA 59.204 50.000 0.30 0.00 0.00 3.53
79 80 1.351430 CGCGCATTTCTCTCGTTCCA 61.351 55.000 8.75 0.00 0.00 3.53
80 81 1.345176 CGCGCATTTCTCTCGTTCC 59.655 57.895 8.75 0.00 0.00 3.62
81 82 1.345176 CCGCGCATTTCTCTCGTTC 59.655 57.895 8.75 0.00 0.00 3.95
82 83 2.100631 CCCGCGCATTTCTCTCGTT 61.101 57.895 8.75 0.00 0.00 3.85
83 84 2.509336 CCCGCGCATTTCTCTCGT 60.509 61.111 8.75 0.00 0.00 4.18
84 85 2.509336 ACCCGCGCATTTCTCTCG 60.509 61.111 8.75 0.00 0.00 4.04
85 86 1.298859 AACACCCGCGCATTTCTCTC 61.299 55.000 8.75 0.00 0.00 3.20
86 87 0.889186 AAACACCCGCGCATTTCTCT 60.889 50.000 8.75 0.00 0.00 3.10
87 88 0.454452 GAAACACCCGCGCATTTCTC 60.454 55.000 8.75 0.00 0.00 2.87
88 89 1.579429 GAAACACCCGCGCATTTCT 59.421 52.632 8.75 0.00 0.00 2.52
89 90 1.795962 CGAAACACCCGCGCATTTC 60.796 57.895 8.75 7.99 0.00 2.17
90 91 2.254051 CGAAACACCCGCGCATTT 59.746 55.556 8.75 0.00 0.00 2.32
97 98 0.041312 CTCTTGTTGCGAAACACCCG 60.041 55.000 8.96 0.59 31.49 5.28
98 99 1.021968 ACTCTTGTTGCGAAACACCC 58.978 50.000 8.96 0.00 31.49 4.61
99 100 1.859998 GCACTCTTGTTGCGAAACACC 60.860 52.381 8.96 0.00 31.49 4.16
100 101 1.466855 GCACTCTTGTTGCGAAACAC 58.533 50.000 8.96 0.00 31.49 3.32
101 102 3.916061 GCACTCTTGTTGCGAAACA 57.084 47.368 4.37 4.37 0.00 2.83
108 109 4.389576 GGCGGCGCACTCTTGTTG 62.390 66.667 34.36 0.00 0.00 3.33
121 122 4.671569 GAGCAGGATAGGCGGCGG 62.672 72.222 9.78 0.00 36.08 6.13
122 123 4.671569 GGAGCAGGATAGGCGGCG 62.672 72.222 0.51 0.51 36.08 6.46
123 124 2.608970 TTTGGAGCAGGATAGGCGGC 62.609 60.000 0.00 0.00 36.08 6.53
124 125 0.107214 TTTTGGAGCAGGATAGGCGG 60.107 55.000 0.00 0.00 36.08 6.13
125 126 1.972872 ATTTTGGAGCAGGATAGGCG 58.027 50.000 0.00 0.00 36.08 5.52
126 127 3.686726 CGATATTTTGGAGCAGGATAGGC 59.313 47.826 0.00 0.00 0.00 3.93
127 128 4.899502 ACGATATTTTGGAGCAGGATAGG 58.100 43.478 0.00 0.00 0.00 2.57
128 129 6.692486 AGTACGATATTTTGGAGCAGGATAG 58.308 40.000 0.00 0.00 0.00 2.08
129 130 6.569801 CGAGTACGATATTTTGGAGCAGGATA 60.570 42.308 0.00 0.00 42.66 2.59
130 131 5.542779 GAGTACGATATTTTGGAGCAGGAT 58.457 41.667 0.00 0.00 0.00 3.24
131 132 4.499188 CGAGTACGATATTTTGGAGCAGGA 60.499 45.833 0.00 0.00 42.66 3.86
132 133 3.736252 CGAGTACGATATTTTGGAGCAGG 59.264 47.826 0.00 0.00 42.66 4.85
133 134 4.607955 TCGAGTACGATATTTTGGAGCAG 58.392 43.478 0.00 0.00 43.81 4.24
134 135 4.642445 TCGAGTACGATATTTTGGAGCA 57.358 40.909 0.00 0.00 43.81 4.26
146 147 3.428452 CCATAGTTTTGCCTCGAGTACGA 60.428 47.826 12.31 0.00 46.56 3.43
147 148 2.858344 CCATAGTTTTGCCTCGAGTACG 59.142 50.000 12.31 0.00 41.26 3.67
148 149 3.195661 CCCATAGTTTTGCCTCGAGTAC 58.804 50.000 12.31 3.57 0.00 2.73
149 150 2.835764 ACCCATAGTTTTGCCTCGAGTA 59.164 45.455 12.31 0.00 0.00 2.59
150 151 1.628846 ACCCATAGTTTTGCCTCGAGT 59.371 47.619 12.31 0.00 0.00 4.18
151 152 2.403252 ACCCATAGTTTTGCCTCGAG 57.597 50.000 5.13 5.13 0.00 4.04
152 153 2.871096 AACCCATAGTTTTGCCTCGA 57.129 45.000 0.00 0.00 33.89 4.04
153 154 2.350498 CGTAACCCATAGTTTTGCCTCG 59.650 50.000 0.00 0.00 40.05 4.63
154 155 2.681344 CCGTAACCCATAGTTTTGCCTC 59.319 50.000 0.00 0.00 40.05 4.70
155 156 2.718563 CCGTAACCCATAGTTTTGCCT 58.281 47.619 0.00 0.00 40.05 4.75
156 157 1.133598 GCCGTAACCCATAGTTTTGCC 59.866 52.381 0.00 0.00 40.05 4.52
157 158 1.813786 TGCCGTAACCCATAGTTTTGC 59.186 47.619 0.00 0.00 40.05 3.68
158 159 2.422127 CCTGCCGTAACCCATAGTTTTG 59.578 50.000 0.00 0.00 40.05 2.44
159 160 2.040679 ACCTGCCGTAACCCATAGTTTT 59.959 45.455 0.00 0.00 40.05 2.43
160 161 1.631898 ACCTGCCGTAACCCATAGTTT 59.368 47.619 0.00 0.00 40.05 2.66
161 162 1.065709 CACCTGCCGTAACCCATAGTT 60.066 52.381 0.00 0.00 42.83 2.24
162 163 0.539986 CACCTGCCGTAACCCATAGT 59.460 55.000 0.00 0.00 0.00 2.12
163 164 0.814010 GCACCTGCCGTAACCCATAG 60.814 60.000 0.00 0.00 34.31 2.23
164 165 1.222387 GCACCTGCCGTAACCCATA 59.778 57.895 0.00 0.00 34.31 2.74
165 166 1.268992 TAGCACCTGCCGTAACCCAT 61.269 55.000 0.00 0.00 43.38 4.00
166 167 1.481901 TTAGCACCTGCCGTAACCCA 61.482 55.000 0.00 0.00 43.38 4.51
167 168 0.743345 CTTAGCACCTGCCGTAACCC 60.743 60.000 0.00 0.00 43.38 4.11
168 169 0.248289 TCTTAGCACCTGCCGTAACC 59.752 55.000 0.00 0.00 43.38 2.85
169 170 2.088950 TTCTTAGCACCTGCCGTAAC 57.911 50.000 0.00 0.00 43.38 2.50
170 171 2.038033 AGTTTCTTAGCACCTGCCGTAA 59.962 45.455 0.00 0.00 43.38 3.18
171 172 1.621814 AGTTTCTTAGCACCTGCCGTA 59.378 47.619 0.00 0.00 43.38 4.02
172 173 0.396811 AGTTTCTTAGCACCTGCCGT 59.603 50.000 0.00 0.00 43.38 5.68
173 174 2.271800 CTAGTTTCTTAGCACCTGCCG 58.728 52.381 0.00 0.00 43.38 5.69
174 175 2.633488 CCTAGTTTCTTAGCACCTGCC 58.367 52.381 0.00 0.00 43.38 4.85
175 176 2.633488 CCCTAGTTTCTTAGCACCTGC 58.367 52.381 0.00 0.00 42.49 4.85
176 177 2.633488 GCCCTAGTTTCTTAGCACCTG 58.367 52.381 0.00 0.00 0.00 4.00
177 178 1.207329 CGCCCTAGTTTCTTAGCACCT 59.793 52.381 0.00 0.00 0.00 4.00
178 179 1.066358 ACGCCCTAGTTTCTTAGCACC 60.066 52.381 0.00 0.00 0.00 5.01
179 180 2.381725 ACGCCCTAGTTTCTTAGCAC 57.618 50.000 0.00 0.00 0.00 4.40
180 181 4.081309 ACAATACGCCCTAGTTTCTTAGCA 60.081 41.667 0.00 0.00 0.00 3.49
181 182 4.439968 ACAATACGCCCTAGTTTCTTAGC 58.560 43.478 0.00 0.00 0.00 3.09
182 183 5.873164 ACAACAATACGCCCTAGTTTCTTAG 59.127 40.000 0.00 0.00 0.00 2.18
183 184 5.797051 ACAACAATACGCCCTAGTTTCTTA 58.203 37.500 0.00 0.00 0.00 2.10
184 185 4.648651 ACAACAATACGCCCTAGTTTCTT 58.351 39.130 0.00 0.00 0.00 2.52
185 186 4.281898 ACAACAATACGCCCTAGTTTCT 57.718 40.909 0.00 0.00 0.00 2.52
186 187 4.032104 CGTACAACAATACGCCCTAGTTTC 59.968 45.833 0.00 0.00 41.28 2.78
187 188 3.928375 CGTACAACAATACGCCCTAGTTT 59.072 43.478 0.00 0.00 41.28 2.66
188 189 3.193267 TCGTACAACAATACGCCCTAGTT 59.807 43.478 0.55 0.00 46.00 2.24
189 190 2.754552 TCGTACAACAATACGCCCTAGT 59.245 45.455 0.55 0.00 46.00 2.57
190 191 3.065786 TCTCGTACAACAATACGCCCTAG 59.934 47.826 0.55 0.00 46.00 3.02
191 192 3.016031 TCTCGTACAACAATACGCCCTA 58.984 45.455 0.55 0.00 46.00 3.53
192 193 1.820519 TCTCGTACAACAATACGCCCT 59.179 47.619 0.55 0.00 46.00 5.19
193 194 2.190981 CTCTCGTACAACAATACGCCC 58.809 52.381 0.55 0.00 46.00 6.13
194 195 2.872370 ACTCTCGTACAACAATACGCC 58.128 47.619 0.55 0.00 46.00 5.68
195 196 6.400422 CAATTACTCTCGTACAACAATACGC 58.600 40.000 0.55 0.00 46.00 4.42
197 198 6.311935 TGGCAATTACTCTCGTACAACAATAC 59.688 38.462 0.00 0.00 0.00 1.89
198 199 6.399743 TGGCAATTACTCTCGTACAACAATA 58.600 36.000 0.00 0.00 0.00 1.90
199 200 5.242434 TGGCAATTACTCTCGTACAACAAT 58.758 37.500 0.00 0.00 0.00 2.71
200 201 4.633175 TGGCAATTACTCTCGTACAACAA 58.367 39.130 0.00 0.00 0.00 2.83
201 202 4.260139 TGGCAATTACTCTCGTACAACA 57.740 40.909 0.00 0.00 0.00 3.33
202 203 4.494199 GCATGGCAATTACTCTCGTACAAC 60.494 45.833 0.00 0.00 0.00 3.32
203 204 3.621268 GCATGGCAATTACTCTCGTACAA 59.379 43.478 0.00 0.00 0.00 2.41
204 205 3.194861 GCATGGCAATTACTCTCGTACA 58.805 45.455 0.00 0.00 0.00 2.90
205 206 2.544267 GGCATGGCAATTACTCTCGTAC 59.456 50.000 15.47 0.00 0.00 3.67
206 207 2.434336 AGGCATGGCAATTACTCTCGTA 59.566 45.455 22.64 0.00 0.00 3.43
207 208 1.210478 AGGCATGGCAATTACTCTCGT 59.790 47.619 22.64 0.00 0.00 4.18
208 209 1.959042 AGGCATGGCAATTACTCTCG 58.041 50.000 22.64 0.00 0.00 4.04
209 210 4.725790 AAAAGGCATGGCAATTACTCTC 57.274 40.909 22.64 0.00 0.00 3.20
210 211 4.824289 CAAAAAGGCATGGCAATTACTCT 58.176 39.130 22.64 0.00 0.00 3.24
211 212 3.371898 GCAAAAAGGCATGGCAATTACTC 59.628 43.478 22.64 0.99 0.00 2.59
212 213 3.244491 TGCAAAAAGGCATGGCAATTACT 60.244 39.130 22.64 4.56 39.25 2.24
213 214 3.072944 TGCAAAAAGGCATGGCAATTAC 58.927 40.909 22.64 11.38 39.25 1.89
214 215 3.413846 TGCAAAAAGGCATGGCAATTA 57.586 38.095 22.64 0.00 39.25 1.40
215 216 2.273538 TGCAAAAAGGCATGGCAATT 57.726 40.000 22.64 12.97 39.25 2.32
216 217 2.156098 CTTGCAAAAAGGCATGGCAAT 58.844 42.857 22.64 6.92 44.48 3.56
217 218 1.595466 CTTGCAAAAAGGCATGGCAA 58.405 45.000 22.64 12.06 44.48 4.52
218 219 3.309052 CTTGCAAAAAGGCATGGCA 57.691 47.368 22.64 4.10 44.48 4.92
221 222 1.293267 CGCCCTTGCAAAAAGGCATG 61.293 55.000 25.85 12.80 43.57 4.06
222 223 1.004679 CGCCCTTGCAAAAAGGCAT 60.005 52.632 25.85 0.00 43.57 4.40
223 224 2.420890 CGCCCTTGCAAAAAGGCA 59.579 55.556 25.85 0.00 43.57 4.75
224 225 2.994387 AAGCGCCCTTGCAAAAAGGC 62.994 55.000 19.86 19.86 40.84 4.35
225 226 1.069596 AAGCGCCCTTGCAAAAAGG 59.930 52.632 2.29 2.86 37.32 3.11
226 227 2.228115 CAAGCGCCCTTGCAAAAAG 58.772 52.632 2.29 0.00 41.72 2.27
227 228 4.434685 CAAGCGCCCTTGCAAAAA 57.565 50.000 2.29 0.00 41.72 1.94
234 235 2.583143 AGAGTTTTTACAAGCGCCCTT 58.417 42.857 2.29 0.00 0.00 3.95
235 236 2.271944 AGAGTTTTTACAAGCGCCCT 57.728 45.000 2.29 0.00 0.00 5.19
236 237 4.023450 AGTTTAGAGTTTTTACAAGCGCCC 60.023 41.667 2.29 0.00 0.00 6.13
237 238 5.049612 AGAGTTTAGAGTTTTTACAAGCGCC 60.050 40.000 2.29 0.00 0.00 6.53
238 239 5.986936 AGAGTTTAGAGTTTTTACAAGCGC 58.013 37.500 0.00 0.00 0.00 5.92
239 240 9.742552 GAATAGAGTTTAGAGTTTTTACAAGCG 57.257 33.333 0.00 0.00 0.00 4.68
263 264 8.992349 TGTCTCATCCATTAAATAAGAGGAGAA 58.008 33.333 4.97 0.00 44.79 2.87
264 265 8.553085 TGTCTCATCCATTAAATAAGAGGAGA 57.447 34.615 0.00 0.00 42.13 3.71
265 266 9.618890 TTTGTCTCATCCATTAAATAAGAGGAG 57.381 33.333 0.00 0.00 38.24 3.69
273 274 9.374838 GCAAAAGATTTGTCTCATCCATTAAAT 57.625 29.630 4.90 0.00 0.00 1.40
274 275 7.818930 GGCAAAAGATTTGTCTCATCCATTAAA 59.181 33.333 4.90 0.00 0.00 1.52
275 276 7.178983 AGGCAAAAGATTTGTCTCATCCATTAA 59.821 33.333 4.21 0.00 25.88 1.40
276 277 6.664816 AGGCAAAAGATTTGTCTCATCCATTA 59.335 34.615 4.21 0.00 25.88 1.90
277 278 5.482878 AGGCAAAAGATTTGTCTCATCCATT 59.517 36.000 4.21 0.00 25.88 3.16
278 279 5.021458 AGGCAAAAGATTTGTCTCATCCAT 58.979 37.500 4.21 0.00 25.88 3.41
279 280 4.410099 AGGCAAAAGATTTGTCTCATCCA 58.590 39.130 4.21 0.00 25.88 3.41
285 286 2.863809 ACGGAGGCAAAAGATTTGTCT 58.136 42.857 9.50 9.50 37.02 3.41
286 287 3.643159 AACGGAGGCAAAAGATTTGTC 57.357 42.857 0.00 0.00 0.00 3.18
287 288 3.550030 CGAAACGGAGGCAAAAGATTTGT 60.550 43.478 4.90 0.00 0.00 2.83
288 289 2.979813 CGAAACGGAGGCAAAAGATTTG 59.020 45.455 0.00 0.00 0.00 2.32
289 290 2.882137 TCGAAACGGAGGCAAAAGATTT 59.118 40.909 0.00 0.00 0.00 2.17
290 291 2.500229 TCGAAACGGAGGCAAAAGATT 58.500 42.857 0.00 0.00 0.00 2.40
291 292 2.178912 TCGAAACGGAGGCAAAAGAT 57.821 45.000 0.00 0.00 0.00 2.40
292 293 1.956297 TTCGAAACGGAGGCAAAAGA 58.044 45.000 0.00 0.00 0.00 2.52
293 294 2.766970 TTTCGAAACGGAGGCAAAAG 57.233 45.000 6.47 0.00 0.00 2.27
294 295 3.505464 TTTTTCGAAACGGAGGCAAAA 57.495 38.095 10.79 0.00 0.00 2.44
316 317 4.401714 CACGCACAAAGCAACAAATTTTT 58.598 34.783 0.00 0.00 46.13 1.94
317 318 3.181512 CCACGCACAAAGCAACAAATTTT 60.182 39.130 0.00 0.00 46.13 1.82
318 319 2.351111 CCACGCACAAAGCAACAAATTT 59.649 40.909 0.00 0.00 46.13 1.82
319 320 1.932511 CCACGCACAAAGCAACAAATT 59.067 42.857 0.00 0.00 46.13 1.82
327 328 1.019278 TAGCTAGCCACGCACAAAGC 61.019 55.000 12.13 0.00 40.87 3.51
328 329 1.002366 CTAGCTAGCCACGCACAAAG 58.998 55.000 12.13 0.00 0.00 2.77
352 353 1.204704 GTTTGGGGTAGCTTGCAATCC 59.795 52.381 0.00 0.53 0.00 3.01
455 456 2.015726 GGAGGAGAGGGGAGGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
476 480 3.069443 GCTAAGGACAGGAGGAAGATGAG 59.931 52.174 0.00 0.00 0.00 2.90
666 684 2.110899 ACACCAAAGGAGGAGAGAGAGA 59.889 50.000 0.00 0.00 0.00 3.10
667 685 2.534990 ACACCAAAGGAGGAGAGAGAG 58.465 52.381 0.00 0.00 0.00 3.20
712 730 2.278332 AGAAAGGGTCTTGGAGTTGC 57.722 50.000 0.00 0.00 29.66 4.17
742 760 4.179599 GAGGGGGAGGGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
797 1119 5.992217 GGGGCTAATGATCTACTACAACAAG 59.008 44.000 0.00 0.00 0.00 3.16
798 1120 5.163237 GGGGGCTAATGATCTACTACAACAA 60.163 44.000 0.00 0.00 0.00 2.83
799 1121 4.347000 GGGGGCTAATGATCTACTACAACA 59.653 45.833 0.00 0.00 0.00 3.33
1183 1545 4.579340 TCAGTGCTCCTAGTAGTATTTCCG 59.421 45.833 0.00 0.00 0.00 4.30
1194 1556 2.428890 CCCTAAGTGTCAGTGCTCCTAG 59.571 54.545 0.00 0.00 0.00 3.02
1196 1558 1.203187 TCCCTAAGTGTCAGTGCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
1197 1559 1.267121 TCCCTAAGTGTCAGTGCTCC 58.733 55.000 0.00 0.00 0.00 4.70
1198 1560 2.234908 ACATCCCTAAGTGTCAGTGCTC 59.765 50.000 0.00 0.00 0.00 4.26
1211 1573 1.823470 GCCGCATGCAACATCCCTA 60.823 57.895 19.57 0.00 40.77 3.53
1212 1574 3.142838 GCCGCATGCAACATCCCT 61.143 61.111 19.57 0.00 40.77 4.20
1213 1575 4.557605 CGCCGCATGCAACATCCC 62.558 66.667 19.57 0.00 41.33 3.85
1214 1576 4.557605 CCGCCGCATGCAACATCC 62.558 66.667 19.57 0.00 41.33 3.51
1413 1775 4.612412 TCCGGGCACACGAACACC 62.612 66.667 0.00 0.00 35.47 4.16
1646 2008 2.246091 AGAAGAGGGAGAGAGGTTGG 57.754 55.000 0.00 0.00 0.00 3.77
1654 2016 0.252742 GGTGGGGAAGAAGAGGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
1658 2022 1.685820 GGTGGTGGGGAAGAAGAGG 59.314 63.158 0.00 0.00 0.00 3.69
1685 2049 3.056607 AGAAAGAAAATGGCGTTGGATGG 60.057 43.478 0.00 0.00 0.00 3.51
1690 2054 6.254589 TGTTGTAAAGAAAGAAAATGGCGTTG 59.745 34.615 0.00 0.00 0.00 4.10
1717 2081 1.163554 GCTCTAGCTTGCTTGCTTGT 58.836 50.000 9.11 0.00 43.74 3.16
2059 2455 3.417275 CTAGGCTAGCGTGCGCAGT 62.417 63.158 19.87 0.01 44.88 4.40
2142 2541 3.688185 GGCATGGATCGATCGTACTAGTA 59.312 47.826 18.81 0.00 0.00 1.82
2143 2542 2.488545 GGCATGGATCGATCGTACTAGT 59.511 50.000 18.81 0.00 0.00 2.57
2144 2543 2.476352 CGGCATGGATCGATCGTACTAG 60.476 54.545 18.81 5.83 0.00 2.57
2145 2544 1.467342 CGGCATGGATCGATCGTACTA 59.533 52.381 18.81 8.74 0.00 1.82
2146 2545 0.241213 CGGCATGGATCGATCGTACT 59.759 55.000 18.81 0.88 0.00 2.73
2147 2546 1.344942 GCGGCATGGATCGATCGTAC 61.345 60.000 18.81 10.09 0.00 3.67
2188 2587 9.712305 GCCATGACTTGTGAGTAGTATTATTAT 57.288 33.333 0.00 0.00 35.88 1.28
2220 2619 2.183858 GAAGAGAACGCAAACGGCCC 62.184 60.000 0.00 0.00 46.04 5.80
2223 2622 1.135972 CATGGAAGAGAACGCAAACGG 60.136 52.381 0.00 0.00 46.04 4.44
2324 3281 0.388649 CCAACAGCGAGCTAACGAGT 60.389 55.000 0.00 0.00 35.09 4.18
2329 3286 3.194755 TGAAGATACCAACAGCGAGCTAA 59.805 43.478 0.00 0.00 0.00 3.09
2330 3287 2.758423 TGAAGATACCAACAGCGAGCTA 59.242 45.455 0.00 0.00 0.00 3.32
2331 3288 1.550524 TGAAGATACCAACAGCGAGCT 59.449 47.619 0.00 0.00 0.00 4.09
2332 3289 1.929836 CTGAAGATACCAACAGCGAGC 59.070 52.381 0.00 0.00 0.00 5.03
2333 3290 3.119316 AGACTGAAGATACCAACAGCGAG 60.119 47.826 0.00 0.00 34.25 5.03
2334 3291 2.826128 AGACTGAAGATACCAACAGCGA 59.174 45.455 0.00 0.00 34.25 4.93
2335 3292 3.238108 AGACTGAAGATACCAACAGCG 57.762 47.619 0.00 0.00 34.25 5.18
2336 3293 5.725362 AGTAAGACTGAAGATACCAACAGC 58.275 41.667 0.00 0.00 34.25 4.40
2471 3431 1.154413 CTGCACCACATTTCGACGC 60.154 57.895 0.00 0.00 0.00 5.19
2628 3591 3.827898 GCTGTCCGGGACCGAGAG 61.828 72.222 23.81 15.17 42.83 3.20
2981 3944 2.182030 CGTCTCTCCTTCCACGGC 59.818 66.667 0.00 0.00 0.00 5.68
3024 3987 2.611800 TCCTGCATGGTCCTGGCT 60.612 61.111 0.00 0.00 37.07 4.75
3362 4325 1.824329 TCGAGGATGAGGGTCTCGC 60.824 63.158 7.04 0.00 46.72 5.03
3367 4330 3.148279 GCCGTCGAGGATGAGGGT 61.148 66.667 6.70 0.00 44.01 4.34
3420 4383 3.964031 AGATGGCTTAGCTTAGCTACACT 59.036 43.478 22.83 16.53 41.12 3.55
3428 4391 4.101119 GGTAGACCAAGATGGCTTAGCTTA 59.899 45.833 3.59 0.00 42.67 3.09
3600 4563 5.733620 AGATTCCATGCAAGTCACAATTT 57.266 34.783 0.00 0.00 0.00 1.82
3610 4573 2.557924 ACAAGCGAAAGATTCCATGCAA 59.442 40.909 0.00 0.00 37.83 4.08
3659 4622 0.253044 TCCCCAGCTGCACTAATGAC 59.747 55.000 8.66 0.00 0.00 3.06
3895 4860 6.953189 CGACGTTTGCAATTCTTTTTCTTTTT 59.047 30.769 0.00 0.00 0.00 1.94
3896 4861 6.309251 TCGACGTTTGCAATTCTTTTTCTTTT 59.691 30.769 0.00 0.00 0.00 2.27
3897 4862 5.802956 TCGACGTTTGCAATTCTTTTTCTTT 59.197 32.000 0.00 0.00 0.00 2.52
3898 4863 5.229260 GTCGACGTTTGCAATTCTTTTTCTT 59.771 36.000 0.00 0.00 0.00 2.52
3899 4864 4.733405 GTCGACGTTTGCAATTCTTTTTCT 59.267 37.500 0.00 0.00 0.00 2.52
3900 4865 4.497608 TGTCGACGTTTGCAATTCTTTTTC 59.502 37.500 11.62 0.00 0.00 2.29
3901 4866 4.264380 GTGTCGACGTTTGCAATTCTTTTT 59.736 37.500 11.62 0.00 0.00 1.94
3902 4867 3.789224 GTGTCGACGTTTGCAATTCTTTT 59.211 39.130 11.62 0.00 0.00 2.27
3903 4868 3.359654 GTGTCGACGTTTGCAATTCTTT 58.640 40.909 11.62 0.00 0.00 2.52
3904 4869 2.598907 CGTGTCGACGTTTGCAATTCTT 60.599 45.455 11.62 0.00 40.91 2.52
3905 4870 1.070843 CGTGTCGACGTTTGCAATTCT 60.071 47.619 11.62 0.00 40.91 2.40
3906 4871 1.305482 CGTGTCGACGTTTGCAATTC 58.695 50.000 11.62 0.00 40.91 2.17
3907 4872 3.431068 CGTGTCGACGTTTGCAATT 57.569 47.368 11.62 0.00 40.91 2.32
4065 5030 3.442273 GGAGTTGAATTGCGGTCCATTTA 59.558 43.478 0.00 0.00 0.00 1.40
4083 5048 4.321601 CGTGACTTTCTCTTGATGAGGAGT 60.322 45.833 5.47 5.47 42.86 3.85
4231 5197 7.391148 AATGGTGCGACTATTGTTCTTAATT 57.609 32.000 0.00 0.00 27.71 1.40
4248 5214 4.464597 TGTTAGGGGTTTGATTAATGGTGC 59.535 41.667 0.00 0.00 0.00 5.01
4316 5282 5.122869 GTGAGTAATCAGTTGCACACATGAT 59.877 40.000 0.00 0.00 39.79 2.45
4391 5359 2.185867 GGGCGCCGTTGTCATCTA 59.814 61.111 22.54 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.