Multiple sequence alignment - TraesCS5D01G237300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G237300 chr5D 100.000 3497 0 0 1 3497 345849708 345846212 0.000000e+00 6458.0
1 TraesCS5D01G237300 chr5D 100.000 435 0 0 3830 4264 345845879 345845445 0.000000e+00 804.0
2 TraesCS5D01G237300 chr5B 92.013 3180 141 49 349 3471 405767114 405770237 0.000000e+00 4361.0
3 TraesCS5D01G237300 chr5B 95.677 347 13 2 3833 4179 405770545 405770889 1.340000e-154 556.0
4 TraesCS5D01G237300 chr5A 89.746 2009 93 43 233 2169 445391123 445393090 0.000000e+00 2464.0
5 TraesCS5D01G237300 chr5A 95.199 1333 41 12 2177 3497 445393249 445394570 0.000000e+00 2085.0
6 TraesCS5D01G237300 chr5A 85.067 375 20 11 3830 4203 445394590 445394929 2.440000e-92 350.0
7 TraesCS5D01G237300 chr5A 94.118 153 9 0 1 153 14937620 14937772 2.560000e-57 233.0
8 TraesCS5D01G237300 chr4B 94.771 153 8 0 1 153 446282690 446282538 5.510000e-59 239.0
9 TraesCS5D01G237300 chr4B 87.075 147 17 2 1302 1447 458459440 458459295 9.490000e-37 165.0
10 TraesCS5D01G237300 chr2B 94.771 153 8 0 1 153 543280219 543280371 5.510000e-59 239.0
11 TraesCS5D01G237300 chr7B 94.118 153 9 0 1 153 85815952 85816104 2.560000e-57 233.0
12 TraesCS5D01G237300 chr7B 94.872 39 0 1 4225 4261 708673795 708673833 4.600000e-05 60.2
13 TraesCS5D01G237300 chr7A 94.118 153 9 0 1 153 576494622 576494774 2.560000e-57 233.0
14 TraesCS5D01G237300 chr1D 94.118 153 9 0 1 153 135332405 135332557 2.560000e-57 233.0
15 TraesCS5D01G237300 chr1B 92.121 165 10 2 1 164 452387424 452387262 3.320000e-56 230.0
16 TraesCS5D01G237300 chr1B 89.444 180 15 3 1 179 463284929 463284753 1.540000e-54 224.0
17 TraesCS5D01G237300 chr6A 91.566 166 13 1 1 165 482571870 482572035 1.190000e-55 228.0
18 TraesCS5D01G237300 chr6A 86.667 60 5 3 4203 4261 466487962 466488019 3.560000e-06 63.9
19 TraesCS5D01G237300 chr4A 88.435 147 15 2 1302 1447 91470405 91470550 4.380000e-40 176.0
20 TraesCS5D01G237300 chr4D 87.075 147 17 2 1302 1447 373209817 373209672 9.490000e-37 165.0
21 TraesCS5D01G237300 chr4D 97.143 35 1 0 4230 4264 110831160 110831126 4.600000e-05 60.2
22 TraesCS5D01G237300 chr3B 97.222 36 1 0 4229 4264 727135874 727135839 1.280000e-05 62.1
23 TraesCS5D01G237300 chrUn 100.000 32 0 0 4230 4261 21858662 21858693 4.600000e-05 60.2
24 TraesCS5D01G237300 chr6D 97.143 35 1 0 4230 4264 37049399 37049365 4.600000e-05 60.2
25 TraesCS5D01G237300 chr6D 100.000 32 0 0 4230 4261 147609883 147609914 4.600000e-05 60.2
26 TraesCS5D01G237300 chr6D 100.000 32 0 0 4230 4261 166243080 166243111 4.600000e-05 60.2
27 TraesCS5D01G237300 chr3D 92.857 42 1 1 4225 4264 542914433 542914392 4.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G237300 chr5D 345845445 345849708 4263 True 3631.0 6458 100.000 1 4264 2 chr5D.!!$R1 4263
1 TraesCS5D01G237300 chr5B 405767114 405770889 3775 False 2458.5 4361 93.845 349 4179 2 chr5B.!!$F1 3830
2 TraesCS5D01G237300 chr5A 445391123 445394929 3806 False 1633.0 2464 90.004 233 4203 3 chr5A.!!$F2 3970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.099968 CTTCGGTTGTAGGATCGCGA 59.900 55.000 13.09 13.09 0.00 5.87 F
25 26 0.527113 TTCGGTTGTAGGATCGCGAA 59.473 50.000 15.24 0.00 0.00 4.70 F
26 27 0.742505 TCGGTTGTAGGATCGCGAAT 59.257 50.000 15.24 4.80 0.00 3.34 F
1592 1667 0.891904 CCTAGGCTCCTCGTCCTAGC 60.892 65.000 0.00 0.00 46.66 3.42 F
2637 2881 2.435059 GGGCAGTGCTCCGTTCTC 60.435 66.667 16.11 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 1371 0.877649 CCTTGGCGTCCATGATCTCG 60.878 60.000 11.56 0.00 31.53 4.04 R
1591 1666 1.325943 GATCAAACGAGTAGCAGCAGC 59.674 52.381 0.00 0.00 42.56 5.25 R
1752 1827 2.125552 TCGCAAGATCCGTGCTGG 60.126 61.111 15.00 3.34 45.01 4.85 R
2756 3003 0.389037 CCATCATCGTCATCGCCGAT 60.389 55.000 0.00 0.00 45.31 4.18 R
4204 4456 0.320697 GTCCTCGTTACAACCAGCCT 59.679 55.000 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.496670 CGGAGCTTCGGTTGTAGG 57.503 61.111 6.48 0.00 0.00 3.18
18 19 1.888018 CGGAGCTTCGGTTGTAGGA 59.112 57.895 6.48 0.00 0.00 2.94
19 20 0.460311 CGGAGCTTCGGTTGTAGGAT 59.540 55.000 6.48 0.00 0.00 3.24
20 21 1.536284 CGGAGCTTCGGTTGTAGGATC 60.536 57.143 6.48 0.00 0.00 3.36
21 22 1.536284 GGAGCTTCGGTTGTAGGATCG 60.536 57.143 0.00 0.00 0.00 3.69
22 23 0.179108 AGCTTCGGTTGTAGGATCGC 60.179 55.000 0.00 0.00 0.00 4.58
23 24 1.480219 GCTTCGGTTGTAGGATCGCG 61.480 60.000 0.00 0.00 0.00 5.87
24 25 0.099968 CTTCGGTTGTAGGATCGCGA 59.900 55.000 13.09 13.09 0.00 5.87
25 26 0.527113 TTCGGTTGTAGGATCGCGAA 59.473 50.000 15.24 0.00 0.00 4.70
26 27 0.742505 TCGGTTGTAGGATCGCGAAT 59.257 50.000 15.24 4.80 0.00 3.34
27 28 1.129326 CGGTTGTAGGATCGCGAATC 58.871 55.000 15.24 11.41 0.00 2.52
28 29 1.535226 CGGTTGTAGGATCGCGAATCA 60.535 52.381 15.24 5.42 35.96 2.57
29 30 2.755650 GGTTGTAGGATCGCGAATCAT 58.244 47.619 15.24 11.72 35.96 2.45
30 31 3.610821 CGGTTGTAGGATCGCGAATCATA 60.611 47.826 15.24 10.67 35.96 2.15
31 32 3.921021 GGTTGTAGGATCGCGAATCATAG 59.079 47.826 15.24 0.00 35.96 2.23
32 33 4.321008 GGTTGTAGGATCGCGAATCATAGA 60.321 45.833 15.24 9.23 35.96 1.98
33 34 5.220381 GTTGTAGGATCGCGAATCATAGAA 58.780 41.667 15.24 14.45 33.17 2.10
34 35 5.644977 TGTAGGATCGCGAATCATAGAAT 57.355 39.130 15.24 0.00 35.96 2.40
35 36 5.641709 TGTAGGATCGCGAATCATAGAATC 58.358 41.667 15.24 1.81 35.96 2.52
36 37 5.416013 TGTAGGATCGCGAATCATAGAATCT 59.584 40.000 15.24 4.95 35.96 2.40
37 38 5.398603 AGGATCGCGAATCATAGAATCTT 57.601 39.130 15.24 0.00 35.96 2.40
38 39 5.406649 AGGATCGCGAATCATAGAATCTTC 58.593 41.667 15.24 0.08 35.96 2.87
39 40 5.047731 AGGATCGCGAATCATAGAATCTTCA 60.048 40.000 15.24 0.00 35.96 3.02
40 41 5.061560 GGATCGCGAATCATAGAATCTTCAC 59.938 44.000 15.24 0.00 35.96 3.18
41 42 5.188327 TCGCGAATCATAGAATCTTCACT 57.812 39.130 6.20 0.00 0.00 3.41
42 43 6.313744 TCGCGAATCATAGAATCTTCACTA 57.686 37.500 6.20 0.00 0.00 2.74
43 44 6.914259 TCGCGAATCATAGAATCTTCACTAT 58.086 36.000 6.20 0.00 0.00 2.12
44 45 7.024171 TCGCGAATCATAGAATCTTCACTATC 58.976 38.462 6.20 0.00 0.00 2.08
45 46 6.803807 CGCGAATCATAGAATCTTCACTATCA 59.196 38.462 0.00 0.00 0.00 2.15
46 47 7.008176 CGCGAATCATAGAATCTTCACTATCAG 59.992 40.741 0.00 0.00 0.00 2.90
47 48 8.026026 GCGAATCATAGAATCTTCACTATCAGA 58.974 37.037 0.00 0.00 0.00 3.27
48 49 9.905171 CGAATCATAGAATCTTCACTATCAGAA 57.095 33.333 0.00 0.00 0.00 3.02
52 53 9.072375 TCATAGAATCTTCACTATCAGAATCGT 57.928 33.333 0.00 0.00 0.00 3.73
55 56 8.684386 AGAATCTTCACTATCAGAATCGTAGA 57.316 34.615 0.00 0.00 45.75 2.59
56 57 9.126151 AGAATCTTCACTATCAGAATCGTAGAA 57.874 33.333 0.00 0.00 43.58 2.10
57 58 9.737427 GAATCTTCACTATCAGAATCGTAGAAA 57.263 33.333 0.00 0.00 43.58 2.52
59 60 9.689976 ATCTTCACTATCAGAATCGTAGAAATG 57.310 33.333 0.00 0.00 43.58 2.32
60 61 8.687242 TCTTCACTATCAGAATCGTAGAAATGT 58.313 33.333 0.00 0.00 43.58 2.71
61 62 9.952188 CTTCACTATCAGAATCGTAGAAATGTA 57.048 33.333 0.00 0.00 43.58 2.29
62 63 9.952188 TTCACTATCAGAATCGTAGAAATGTAG 57.048 33.333 0.00 0.00 43.58 2.74
63 64 9.338622 TCACTATCAGAATCGTAGAAATGTAGA 57.661 33.333 0.00 0.00 43.58 2.59
94 95 9.765795 AAGAACTAAAATCGTAGAATCATAGGG 57.234 33.333 0.00 0.00 43.58 3.53
95 96 8.368668 AGAACTAAAATCGTAGAATCATAGGGG 58.631 37.037 0.00 0.00 43.58 4.79
96 97 7.613551 ACTAAAATCGTAGAATCATAGGGGT 57.386 36.000 0.00 0.00 43.58 4.95
97 98 8.030913 ACTAAAATCGTAGAATCATAGGGGTT 57.969 34.615 0.00 0.00 43.58 4.11
98 99 9.151177 ACTAAAATCGTAGAATCATAGGGGTTA 57.849 33.333 0.00 0.00 43.58 2.85
99 100 9.640963 CTAAAATCGTAGAATCATAGGGGTTAG 57.359 37.037 0.00 0.00 43.58 2.34
100 101 7.613551 AAATCGTAGAATCATAGGGGTTAGT 57.386 36.000 0.00 0.00 43.58 2.24
101 102 7.613551 AATCGTAGAATCATAGGGGTTAGTT 57.386 36.000 0.00 0.00 43.58 2.24
102 103 7.613551 ATCGTAGAATCATAGGGGTTAGTTT 57.386 36.000 0.00 0.00 43.58 2.66
103 104 8.716674 ATCGTAGAATCATAGGGGTTAGTTTA 57.283 34.615 0.00 0.00 43.58 2.01
104 105 8.174733 TCGTAGAATCATAGGGGTTAGTTTAG 57.825 38.462 0.00 0.00 0.00 1.85
105 106 8.000709 TCGTAGAATCATAGGGGTTAGTTTAGA 58.999 37.037 0.00 0.00 0.00 2.10
106 107 8.804204 CGTAGAATCATAGGGGTTAGTTTAGAT 58.196 37.037 0.00 0.00 0.00 1.98
109 110 9.095700 AGAATCATAGGGGTTAGTTTAGATCTC 57.904 37.037 0.00 0.00 0.00 2.75
110 111 8.798975 AATCATAGGGGTTAGTTTAGATCTCA 57.201 34.615 0.00 0.00 0.00 3.27
111 112 8.798975 ATCATAGGGGTTAGTTTAGATCTCAA 57.201 34.615 0.00 0.00 0.00 3.02
112 113 8.618240 TCATAGGGGTTAGTTTAGATCTCAAA 57.382 34.615 0.00 0.00 0.00 2.69
113 114 8.705594 TCATAGGGGTTAGTTTAGATCTCAAAG 58.294 37.037 0.00 0.00 0.00 2.77
114 115 6.954352 AGGGGTTAGTTTAGATCTCAAAGT 57.046 37.500 0.00 4.60 0.00 2.66
115 116 6.948589 AGGGGTTAGTTTAGATCTCAAAGTC 58.051 40.000 0.00 0.00 0.00 3.01
116 117 5.811100 GGGGTTAGTTTAGATCTCAAAGTCG 59.189 44.000 0.00 0.00 0.00 4.18
117 118 6.396450 GGGTTAGTTTAGATCTCAAAGTCGT 58.604 40.000 0.00 0.00 0.00 4.34
118 119 7.363268 GGGGTTAGTTTAGATCTCAAAGTCGTA 60.363 40.741 0.00 0.00 0.00 3.43
119 120 7.701501 GGGTTAGTTTAGATCTCAAAGTCGTAG 59.298 40.741 0.00 0.00 0.00 3.51
120 121 8.457261 GGTTAGTTTAGATCTCAAAGTCGTAGA 58.543 37.037 0.00 0.00 0.00 2.59
121 122 9.837525 GTTAGTTTAGATCTCAAAGTCGTAGAA 57.162 33.333 0.00 0.00 39.69 2.10
124 125 7.911205 AGTTTAGATCTCAAAGTCGTAGAATCG 59.089 37.037 0.00 0.00 39.69 3.34
125 126 5.821516 AGATCTCAAAGTCGTAGAATCGT 57.178 39.130 0.00 0.00 39.69 3.73
126 127 6.922247 AGATCTCAAAGTCGTAGAATCGTA 57.078 37.500 0.00 0.00 39.69 3.43
127 128 7.499321 AGATCTCAAAGTCGTAGAATCGTAT 57.501 36.000 0.00 0.00 39.69 3.06
128 129 8.604640 AGATCTCAAAGTCGTAGAATCGTATA 57.395 34.615 0.00 0.00 39.69 1.47
129 130 9.053840 AGATCTCAAAGTCGTAGAATCGTATAA 57.946 33.333 0.00 0.00 39.69 0.98
130 131 9.105206 GATCTCAAAGTCGTAGAATCGTATAAC 57.895 37.037 0.00 0.00 39.69 1.89
131 132 7.977904 TCTCAAAGTCGTAGAATCGTATAACA 58.022 34.615 0.00 0.00 39.69 2.41
132 133 8.121086 TCTCAAAGTCGTAGAATCGTATAACAG 58.879 37.037 0.00 0.00 39.69 3.16
133 134 7.977904 TCAAAGTCGTAGAATCGTATAACAGA 58.022 34.615 0.00 0.00 39.69 3.41
134 135 8.453320 TCAAAGTCGTAGAATCGTATAACAGAA 58.547 33.333 0.00 0.00 39.69 3.02
135 136 9.234384 CAAAGTCGTAGAATCGTATAACAGAAT 57.766 33.333 0.00 0.00 39.69 2.40
136 137 9.448294 AAAGTCGTAGAATCGTATAACAGAATC 57.552 33.333 0.00 0.00 39.69 2.52
137 138 7.289395 AGTCGTAGAATCGTATAACAGAATCG 58.711 38.462 0.00 0.00 39.69 3.34
138 139 6.031210 GTCGTAGAATCGTATAACAGAATCGC 59.969 42.308 0.00 0.00 39.69 4.58
139 140 5.001359 CGTAGAATCGTATAACAGAATCGCG 59.999 44.000 0.00 0.00 0.00 5.87
140 141 5.104562 AGAATCGTATAACAGAATCGCGA 57.895 39.130 13.09 13.09 0.00 5.87
141 142 5.700846 AGAATCGTATAACAGAATCGCGAT 58.299 37.500 17.62 17.62 38.92 4.58
142 143 6.150318 AGAATCGTATAACAGAATCGCGATT 58.850 36.000 32.97 32.97 45.90 3.34
143 144 5.994235 ATCGTATAACAGAATCGCGATTC 57.006 39.130 41.15 41.15 45.66 2.52
151 152 2.721129 GAATCGCGATTCTGACAACC 57.279 50.000 40.72 21.74 42.85 3.77
152 153 2.271800 GAATCGCGATTCTGACAACCT 58.728 47.619 40.72 17.09 42.85 3.50
153 154 3.444916 GAATCGCGATTCTGACAACCTA 58.555 45.455 40.72 5.71 42.85 3.08
154 155 2.273370 TCGCGATTCTGACAACCTAC 57.727 50.000 3.71 0.00 0.00 3.18
155 156 1.816835 TCGCGATTCTGACAACCTACT 59.183 47.619 3.71 0.00 0.00 2.57
156 157 1.920574 CGCGATTCTGACAACCTACTG 59.079 52.381 0.00 0.00 0.00 2.74
157 158 2.671351 CGCGATTCTGACAACCTACTGT 60.671 50.000 0.00 0.00 0.00 3.55
158 159 2.924290 GCGATTCTGACAACCTACTGTC 59.076 50.000 0.00 0.00 45.01 3.51
164 165 2.787601 GACAACCTACTGTCGTCACA 57.212 50.000 0.00 0.00 36.64 3.58
165 166 2.391879 GACAACCTACTGTCGTCACAC 58.608 52.381 0.00 0.00 36.64 3.82
166 167 1.752498 ACAACCTACTGTCGTCACACA 59.248 47.619 0.00 0.00 0.00 3.72
167 168 2.364324 ACAACCTACTGTCGTCACACAT 59.636 45.455 0.00 0.00 0.00 3.21
168 169 3.181469 ACAACCTACTGTCGTCACACATT 60.181 43.478 0.00 0.00 0.00 2.71
169 170 3.026630 ACCTACTGTCGTCACACATTG 57.973 47.619 0.00 0.00 0.00 2.82
170 171 2.626266 ACCTACTGTCGTCACACATTGA 59.374 45.455 0.00 0.00 0.00 2.57
171 172 3.069016 ACCTACTGTCGTCACACATTGAA 59.931 43.478 0.00 0.00 35.39 2.69
172 173 4.245660 CCTACTGTCGTCACACATTGAAT 58.754 43.478 0.00 0.00 35.39 2.57
173 174 4.327357 CCTACTGTCGTCACACATTGAATC 59.673 45.833 0.00 0.00 35.39 2.52
174 175 3.067106 ACTGTCGTCACACATTGAATCC 58.933 45.455 0.00 0.00 35.39 3.01
175 176 3.244215 ACTGTCGTCACACATTGAATCCT 60.244 43.478 0.00 0.00 35.39 3.24
176 177 4.021456 ACTGTCGTCACACATTGAATCCTA 60.021 41.667 0.00 0.00 35.39 2.94
177 178 4.242475 TGTCGTCACACATTGAATCCTAC 58.758 43.478 0.00 0.00 35.39 3.18
178 179 4.021456 TGTCGTCACACATTGAATCCTACT 60.021 41.667 0.00 0.00 35.39 2.57
179 180 4.929808 GTCGTCACACATTGAATCCTACTT 59.070 41.667 0.00 0.00 35.39 2.24
180 181 4.929211 TCGTCACACATTGAATCCTACTTG 59.071 41.667 0.00 0.00 35.39 3.16
181 182 4.929211 CGTCACACATTGAATCCTACTTGA 59.071 41.667 0.00 0.00 35.39 3.02
182 183 5.582269 CGTCACACATTGAATCCTACTTGAT 59.418 40.000 0.00 0.00 35.39 2.57
183 184 6.092670 CGTCACACATTGAATCCTACTTGATT 59.907 38.462 0.00 0.00 35.39 2.57
184 185 7.246311 GTCACACATTGAATCCTACTTGATTG 58.754 38.462 0.00 0.00 35.39 2.67
185 186 6.942005 TCACACATTGAATCCTACTTGATTGT 59.058 34.615 0.00 0.00 35.15 2.71
186 187 7.119699 TCACACATTGAATCCTACTTGATTGTC 59.880 37.037 0.00 0.00 35.15 3.18
187 188 7.120285 CACACATTGAATCCTACTTGATTGTCT 59.880 37.037 0.00 0.00 35.15 3.41
188 189 8.321353 ACACATTGAATCCTACTTGATTGTCTA 58.679 33.333 0.00 0.00 35.15 2.59
189 190 9.334947 CACATTGAATCCTACTTGATTGTCTAT 57.665 33.333 0.00 0.00 35.15 1.98
190 191 9.334947 ACATTGAATCCTACTTGATTGTCTATG 57.665 33.333 0.00 0.00 35.15 2.23
191 192 8.781196 CATTGAATCCTACTTGATTGTCTATGG 58.219 37.037 0.00 0.00 35.15 2.74
192 193 7.675161 TGAATCCTACTTGATTGTCTATGGA 57.325 36.000 0.00 0.00 35.15 3.41
193 194 7.730084 TGAATCCTACTTGATTGTCTATGGAG 58.270 38.462 0.00 0.00 35.15 3.86
194 195 7.565029 TGAATCCTACTTGATTGTCTATGGAGA 59.435 37.037 0.00 0.00 35.15 3.71
195 196 7.921041 ATCCTACTTGATTGTCTATGGAGAA 57.079 36.000 0.00 0.00 31.96 2.87
196 197 7.733773 TCCTACTTGATTGTCTATGGAGAAA 57.266 36.000 0.00 0.00 31.96 2.52
197 198 8.146053 TCCTACTTGATTGTCTATGGAGAAAA 57.854 34.615 0.00 0.00 33.27 2.29
198 199 8.041323 TCCTACTTGATTGTCTATGGAGAAAAC 58.959 37.037 0.00 0.00 31.43 2.43
199 200 7.824289 CCTACTTGATTGTCTATGGAGAAAACA 59.176 37.037 0.00 0.00 31.43 2.83
200 201 9.388506 CTACTTGATTGTCTATGGAGAAAACAT 57.611 33.333 0.00 0.00 31.43 2.71
201 202 8.048534 ACTTGATTGTCTATGGAGAAAACATG 57.951 34.615 0.00 0.00 31.43 3.21
202 203 7.884877 ACTTGATTGTCTATGGAGAAAACATGA 59.115 33.333 0.00 0.00 31.43 3.07
203 204 8.812513 TTGATTGTCTATGGAGAAAACATGAT 57.187 30.769 0.00 0.00 31.43 2.45
204 205 8.812513 TGATTGTCTATGGAGAAAACATGATT 57.187 30.769 0.00 0.00 31.43 2.57
205 206 8.896744 TGATTGTCTATGGAGAAAACATGATTC 58.103 33.333 0.00 3.71 31.43 2.52
206 207 9.118300 GATTGTCTATGGAGAAAACATGATTCT 57.882 33.333 15.22 15.22 39.76 2.40
207 208 8.868522 TTGTCTATGGAGAAAACATGATTCTT 57.131 30.769 16.03 6.84 37.26 2.52
208 209 8.498054 TGTCTATGGAGAAAACATGATTCTTC 57.502 34.615 16.03 14.95 37.26 2.87
209 210 8.102676 TGTCTATGGAGAAAACATGATTCTTCA 58.897 33.333 21.25 21.25 44.39 3.02
210 211 8.394121 GTCTATGGAGAAAACATGATTCTTCAC 58.606 37.037 21.36 14.18 43.39 3.18
211 212 5.611796 TGGAGAAAACATGATTCTTCACG 57.388 39.130 17.50 0.00 37.46 4.35
212 213 5.063204 TGGAGAAAACATGATTCTTCACGT 58.937 37.500 17.50 0.00 37.46 4.49
213 214 6.227522 TGGAGAAAACATGATTCTTCACGTA 58.772 36.000 17.50 2.24 37.46 3.57
214 215 6.708502 TGGAGAAAACATGATTCTTCACGTAA 59.291 34.615 17.50 1.97 37.46 3.18
215 216 7.227711 TGGAGAAAACATGATTCTTCACGTAAA 59.772 33.333 17.50 1.44 37.46 2.01
216 217 8.237267 GGAGAAAACATGATTCTTCACGTAAAT 58.763 33.333 16.03 0.00 37.26 1.40
217 218 9.612620 GAGAAAACATGATTCTTCACGTAAATT 57.387 29.630 16.03 0.00 37.26 1.82
218 219 9.965824 AGAAAACATGATTCTTCACGTAAATTT 57.034 25.926 0.00 0.00 33.41 1.82
219 220 9.993881 GAAAACATGATTCTTCACGTAAATTTG 57.006 29.630 0.00 0.00 33.85 2.32
220 221 9.743057 AAAACATGATTCTTCACGTAAATTTGA 57.257 25.926 0.00 0.00 33.85 2.69
221 222 9.743057 AAACATGATTCTTCACGTAAATTTGAA 57.257 25.926 0.00 0.00 33.85 2.69
222 223 8.955061 ACATGATTCTTCACGTAAATTTGAAG 57.045 30.769 10.20 10.20 46.87 3.02
223 224 8.567948 ACATGATTCTTCACGTAAATTTGAAGT 58.432 29.630 14.34 4.04 46.01 3.01
224 225 8.843733 CATGATTCTTCACGTAAATTTGAAGTG 58.156 33.333 14.34 13.68 46.01 3.16
225 226 7.359595 TGATTCTTCACGTAAATTTGAAGTGG 58.640 34.615 14.34 5.50 46.01 4.00
226 227 6.928979 TTCTTCACGTAAATTTGAAGTGGA 57.071 33.333 14.34 9.31 46.01 4.02
227 228 7.504924 TTCTTCACGTAAATTTGAAGTGGAT 57.495 32.000 14.34 0.00 46.01 3.41
228 229 6.898041 TCTTCACGTAAATTTGAAGTGGATG 58.102 36.000 14.34 9.12 46.01 3.51
229 230 5.621197 TCACGTAAATTTGAAGTGGATGG 57.379 39.130 16.78 0.00 33.98 3.51
230 231 5.309638 TCACGTAAATTTGAAGTGGATGGA 58.690 37.500 16.78 1.93 33.98 3.41
231 232 5.943416 TCACGTAAATTTGAAGTGGATGGAT 59.057 36.000 16.78 0.00 33.98 3.41
232 233 6.432783 TCACGTAAATTTGAAGTGGATGGATT 59.567 34.615 16.78 0.00 33.98 3.01
233 234 7.040062 TCACGTAAATTTGAAGTGGATGGATTT 60.040 33.333 16.78 0.00 33.98 2.17
234 235 7.598493 CACGTAAATTTGAAGTGGATGGATTTT 59.402 33.333 0.00 0.00 0.00 1.82
235 236 8.147704 ACGTAAATTTGAAGTGGATGGATTTTT 58.852 29.630 0.00 0.00 0.00 1.94
258 259 5.573380 TTTCCTGCTAGAATCTATGGCAT 57.427 39.130 4.88 4.88 32.39 4.40
267 268 8.491958 TGCTAGAATCTATGGCATATGAATCAT 58.508 33.333 7.81 9.04 0.00 2.45
275 276 8.158789 TCTATGGCATATGAATCATCACAAGAA 58.841 33.333 7.81 0.00 38.69 2.52
276 277 7.591421 ATGGCATATGAATCATCACAAGAAA 57.409 32.000 6.97 0.00 38.69 2.52
277 278 7.407393 TGGCATATGAATCATCACAAGAAAA 57.593 32.000 6.97 0.00 38.69 2.29
278 279 7.838884 TGGCATATGAATCATCACAAGAAAAA 58.161 30.769 6.97 0.00 38.69 1.94
330 335 4.457466 TGAAAGAGGTCCCAACAAAGTAC 58.543 43.478 0.00 0.00 0.00 2.73
331 336 4.165372 TGAAAGAGGTCCCAACAAAGTACT 59.835 41.667 0.00 0.00 0.00 2.73
333 338 5.485209 AAGAGGTCCCAACAAAGTACTAG 57.515 43.478 0.00 0.00 0.00 2.57
334 339 4.490706 AGAGGTCCCAACAAAGTACTAGT 58.509 43.478 0.00 0.00 0.00 2.57
336 341 6.262207 AGAGGTCCCAACAAAGTACTAGTAT 58.738 40.000 5.75 0.00 0.00 2.12
337 342 6.380560 AGAGGTCCCAACAAAGTACTAGTATC 59.619 42.308 5.75 0.38 0.00 2.24
339 344 6.672657 AGGTCCCAACAAAGTACTAGTATCAT 59.327 38.462 5.75 0.00 0.00 2.45
340 345 7.842743 AGGTCCCAACAAAGTACTAGTATCATA 59.157 37.037 5.75 0.00 0.00 2.15
403 408 6.619744 ACTATCTATCAGTGCAGATGAATCG 58.380 40.000 14.15 0.00 33.58 3.34
574 581 2.219325 CTCACTCACGAGCACTCCCC 62.219 65.000 0.00 0.00 0.00 4.81
1490 1544 4.854839 CCGATCATCGTATGTATTTACGCA 59.145 41.667 6.25 0.00 43.52 5.24
1520 1574 4.504461 CCTTCTCGATCGTCTAAAACCATG 59.496 45.833 15.94 0.00 0.00 3.66
1529 1583 6.403333 TCGTCTAAAACCATGAATTCTTCG 57.597 37.500 7.05 0.00 0.00 3.79
1530 1584 5.929992 TCGTCTAAAACCATGAATTCTTCGT 59.070 36.000 7.05 0.00 0.00 3.85
1545 1617 8.651389 TGAATTCTTCGTGATCCCTAATTATCT 58.349 33.333 7.05 0.00 0.00 1.98
1592 1667 0.891904 CCTAGGCTCCTCGTCCTAGC 60.892 65.000 0.00 0.00 46.66 3.42
1640 1715 3.254470 TGCTGCCGCAAATTACTACTA 57.746 42.857 0.00 0.00 44.62 1.82
1645 1720 3.936453 TGCCGCAAATTACTACTACCAAG 59.064 43.478 0.00 0.00 0.00 3.61
1705 1780 2.579207 TAGCTAAGCTAGGTGTTGCG 57.421 50.000 0.00 0.00 40.44 4.85
1799 1874 3.768878 ACAGGCTACTACTGTGAAGTCT 58.231 45.455 0.00 0.00 46.67 3.24
1800 1875 3.508012 ACAGGCTACTACTGTGAAGTCTG 59.492 47.826 14.79 14.79 46.67 3.51
1801 1876 3.508012 CAGGCTACTACTGTGAAGTCTGT 59.492 47.826 10.48 0.00 37.02 3.41
1805 1880 5.336744 GCTACTACTGTGAAGTCTGTGATC 58.663 45.833 0.00 0.00 0.00 2.92
1808 1883 3.393089 ACTGTGAAGTCTGTGATCACC 57.607 47.619 22.85 7.89 42.12 4.02
1840 1915 7.769970 ACCAAAACACAATGAAACAAGAATCAT 59.230 29.630 0.00 0.00 37.88 2.45
1888 1963 5.712152 AACCTTCATTTTGCTAGGTCTTG 57.288 39.130 0.00 0.00 40.03 3.02
1986 2061 7.726216 TGCTAGGAAGATTTTCATTATCGAGA 58.274 34.615 0.00 0.00 34.90 4.04
1987 2062 8.204160 TGCTAGGAAGATTTTCATTATCGAGAA 58.796 33.333 0.00 0.00 34.90 2.87
2023 2098 6.093082 ACGCATACTAACCTGTGGTAAAAATC 59.907 38.462 0.00 0.00 33.12 2.17
2049 2131 8.772705 CACAATGCAAAATAACCTGTGTTAAAT 58.227 29.630 0.00 0.00 40.21 1.40
2131 2213 3.887352 TGGTTCTACTCGATCTAGCAGT 58.113 45.455 0.00 0.00 0.00 4.40
2132 2214 3.628032 TGGTTCTACTCGATCTAGCAGTG 59.372 47.826 0.00 0.00 0.00 3.66
2156 2238 7.912250 GTGTGCTAATGTTTTATCTTGGAGATG 59.088 37.037 0.82 0.00 35.37 2.90
2169 2251 6.901615 TCTTGGAGATGGGATTAAAAGGTA 57.098 37.500 0.00 0.00 0.00 3.08
2170 2252 6.659824 TCTTGGAGATGGGATTAAAAGGTAC 58.340 40.000 0.00 0.00 0.00 3.34
2171 2253 5.031066 TGGAGATGGGATTAAAAGGTACG 57.969 43.478 0.00 0.00 0.00 3.67
2174 2409 5.987953 GGAGATGGGATTAAAAGGTACGTAC 59.012 44.000 17.56 17.56 0.00 3.67
2175 2410 6.407299 GGAGATGGGATTAAAAGGTACGTACA 60.407 42.308 26.02 5.85 0.00 2.90
2179 2414 5.045724 TGGGATTAAAAGGTACGTACATGGT 60.046 40.000 26.02 13.55 0.00 3.55
2183 2418 7.548780 GGATTAAAAGGTACGTACATGGTGTTA 59.451 37.037 26.02 13.15 0.00 2.41
2184 2419 9.101655 GATTAAAAGGTACGTACATGGTGTTAT 57.898 33.333 26.02 9.69 0.00 1.89
2185 2420 6.973229 AAAAGGTACGTACATGGTGTTATC 57.027 37.500 26.02 5.70 0.00 1.75
2198 2433 7.394016 ACATGGTGTTATCTGAGTGATACAAA 58.606 34.615 0.00 0.00 37.38 2.83
2200 2435 6.406370 TGGTGTTATCTGAGTGATACAAAGG 58.594 40.000 0.00 0.00 37.38 3.11
2201 2436 6.013725 TGGTGTTATCTGAGTGATACAAAGGT 60.014 38.462 0.00 0.00 37.38 3.50
2202 2437 6.313905 GGTGTTATCTGAGTGATACAAAGGTG 59.686 42.308 0.00 0.00 37.38 4.00
2203 2438 6.313905 GTGTTATCTGAGTGATACAAAGGTGG 59.686 42.308 0.00 0.00 37.38 4.61
2204 2439 6.212589 TGTTATCTGAGTGATACAAAGGTGGA 59.787 38.462 0.00 0.00 37.38 4.02
2205 2440 4.537135 TCTGAGTGATACAAAGGTGGAC 57.463 45.455 0.00 0.00 0.00 4.02
2206 2441 3.056821 TCTGAGTGATACAAAGGTGGACG 60.057 47.826 0.00 0.00 0.00 4.79
2207 2442 2.631062 TGAGTGATACAAAGGTGGACGT 59.369 45.455 0.00 0.00 0.00 4.34
2208 2443 3.827876 TGAGTGATACAAAGGTGGACGTA 59.172 43.478 0.00 0.00 0.00 3.57
2362 2602 3.536956 AGAAATCTTTCATACGCCGGA 57.463 42.857 5.05 0.00 39.61 5.14
2637 2881 2.435059 GGGCAGTGCTCCGTTCTC 60.435 66.667 16.11 0.00 0.00 2.87
2783 3030 4.166888 ACGATGATGGCGGCTGCT 62.167 61.111 18.85 0.00 42.25 4.24
2786 3033 2.044650 ATGATGGCGGCTGCTGTT 60.045 55.556 18.85 1.94 42.25 3.16
2801 3048 2.741211 GTTGGGGGCGACGAAGAC 60.741 66.667 0.00 0.00 0.00 3.01
3035 3282 2.892640 CTCCTCATCACGGCGGAA 59.107 61.111 13.24 0.00 0.00 4.30
3088 3335 2.485582 CATCGACGAGGAGTGCGT 59.514 61.111 2.79 0.00 45.79 5.24
3182 3429 2.202810 TGCAGCAACGACACGTCA 60.203 55.556 0.00 0.00 39.99 4.35
3292 3539 1.462283 CGGCATTATCCAAGATCGCAG 59.538 52.381 0.00 0.00 0.00 5.18
3293 3540 2.771089 GGCATTATCCAAGATCGCAGA 58.229 47.619 0.00 0.00 45.75 4.26
3370 3617 3.294493 TCGCAAGCTTTGGGGTGC 61.294 61.111 0.00 0.00 43.12 5.01
4066 4314 5.349270 TGATTTTAGTTGAGCAAATGCATGC 59.651 36.000 11.82 11.82 46.78 4.06
4106 4358 5.642063 TGAACTACTGTGTGCTATTTAAGGC 59.358 40.000 0.00 0.00 0.00 4.35
4107 4359 5.422214 ACTACTGTGTGCTATTTAAGGCT 57.578 39.130 0.00 0.00 0.00 4.58
4108 4360 5.420409 ACTACTGTGTGCTATTTAAGGCTC 58.580 41.667 0.00 0.00 0.00 4.70
4109 4361 3.262420 ACTGTGTGCTATTTAAGGCTCG 58.738 45.455 0.00 0.00 0.00 5.03
4123 4375 0.896226 GGCTCGTGGAGTTTCTAGGT 59.104 55.000 0.00 0.00 31.39 3.08
4124 4376 1.135053 GGCTCGTGGAGTTTCTAGGTC 60.135 57.143 0.00 0.00 31.39 3.85
4156 4408 3.003480 CCTGTGCTAGTTAAAGGCTGTC 58.997 50.000 0.00 0.00 0.00 3.51
4181 4433 4.767928 TGTTTGTGTTCACCTGTAAAACCT 59.232 37.500 10.83 0.00 0.00 3.50
4193 4445 6.530181 CACCTGTAAAACCTTTTTGTGTTCTC 59.470 38.462 0.00 0.00 0.00 2.87
4203 4455 8.721133 ACCTTTTTGTGTTCTCCCTTTATATT 57.279 30.769 0.00 0.00 0.00 1.28
4204 4456 9.816787 ACCTTTTTGTGTTCTCCCTTTATATTA 57.183 29.630 0.00 0.00 0.00 0.98
4207 4459 7.875327 TTTGTGTTCTCCCTTTATATTAGGC 57.125 36.000 0.00 0.00 0.00 3.93
4208 4460 6.824958 TGTGTTCTCCCTTTATATTAGGCT 57.175 37.500 0.00 0.00 0.00 4.58
4209 4461 6.591935 TGTGTTCTCCCTTTATATTAGGCTG 58.408 40.000 0.00 0.00 0.00 4.85
4210 4462 5.998363 GTGTTCTCCCTTTATATTAGGCTGG 59.002 44.000 0.00 0.00 0.00 4.85
4211 4463 5.670361 TGTTCTCCCTTTATATTAGGCTGGT 59.330 40.000 0.00 0.00 0.00 4.00
4212 4464 6.159751 TGTTCTCCCTTTATATTAGGCTGGTT 59.840 38.462 0.00 0.00 0.00 3.67
4213 4465 6.187727 TCTCCCTTTATATTAGGCTGGTTG 57.812 41.667 0.00 0.00 0.00 3.77
4214 4466 5.670361 TCTCCCTTTATATTAGGCTGGTTGT 59.330 40.000 0.00 0.00 0.00 3.32
4215 4467 6.847567 TCTCCCTTTATATTAGGCTGGTTGTA 59.152 38.462 0.00 0.00 0.00 2.41
4216 4468 7.348801 TCTCCCTTTATATTAGGCTGGTTGTAA 59.651 37.037 0.00 0.00 0.00 2.41
4217 4469 7.284820 TCCCTTTATATTAGGCTGGTTGTAAC 58.715 38.462 0.00 0.00 0.00 2.50
4218 4470 6.204108 CCCTTTATATTAGGCTGGTTGTAACG 59.796 42.308 0.00 0.00 0.00 3.18
4219 4471 6.987992 CCTTTATATTAGGCTGGTTGTAACGA 59.012 38.462 0.00 0.00 0.00 3.85
4220 4472 7.170998 CCTTTATATTAGGCTGGTTGTAACGAG 59.829 40.741 0.00 2.84 37.74 4.18
4221 4473 2.754946 TTAGGCTGGTTGTAACGAGG 57.245 50.000 0.00 0.00 35.58 4.63
4222 4474 1.927487 TAGGCTGGTTGTAACGAGGA 58.073 50.000 0.00 0.00 35.58 3.71
4223 4475 0.320697 AGGCTGGTTGTAACGAGGAC 59.679 55.000 8.51 0.00 35.58 3.85
4224 4476 0.320697 GGCTGGTTGTAACGAGGACT 59.679 55.000 8.51 0.00 35.58 3.85
4225 4477 1.547372 GGCTGGTTGTAACGAGGACTA 59.453 52.381 8.51 0.00 35.58 2.59
4226 4478 2.167900 GGCTGGTTGTAACGAGGACTAT 59.832 50.000 8.51 0.00 35.58 2.12
4227 4479 3.445857 GCTGGTTGTAACGAGGACTATC 58.554 50.000 8.51 0.00 35.58 2.08
4228 4480 3.119245 GCTGGTTGTAACGAGGACTATCA 60.119 47.826 8.51 0.00 35.58 2.15
4229 4481 4.441634 GCTGGTTGTAACGAGGACTATCAT 60.442 45.833 8.51 0.00 35.58 2.45
4230 4482 5.006153 TGGTTGTAACGAGGACTATCATG 57.994 43.478 0.00 0.00 0.00 3.07
4231 4483 4.464951 TGGTTGTAACGAGGACTATCATGT 59.535 41.667 0.00 0.00 0.00 3.21
4232 4484 5.653330 TGGTTGTAACGAGGACTATCATGTA 59.347 40.000 0.00 0.00 0.00 2.29
4233 4485 6.322969 TGGTTGTAACGAGGACTATCATGTAT 59.677 38.462 0.00 0.00 0.00 2.29
4234 4486 6.641314 GGTTGTAACGAGGACTATCATGTATG 59.359 42.308 0.00 0.00 0.00 2.39
4235 4487 7.423199 GTTGTAACGAGGACTATCATGTATGA 58.577 38.462 0.00 0.00 41.70 2.15
4237 4489 8.857694 TGTAACGAGGACTATCATGTATGATA 57.142 34.615 12.58 12.58 45.17 2.15
4238 4490 8.727910 TGTAACGAGGACTATCATGTATGATAC 58.272 37.037 9.84 0.00 45.17 2.24
4239 4491 8.948145 GTAACGAGGACTATCATGTATGATACT 58.052 37.037 9.84 6.78 45.17 2.12
4241 4493 8.495361 ACGAGGACTATCATGTATGATACTAC 57.505 38.462 9.84 3.86 45.17 2.73
4242 4494 8.322828 ACGAGGACTATCATGTATGATACTACT 58.677 37.037 9.84 7.83 45.17 2.57
4243 4495 9.168451 CGAGGACTATCATGTATGATACTACTT 57.832 37.037 9.84 2.94 45.17 2.24
4245 4497 9.469097 AGGACTATCATGTATGATACTACTTCC 57.531 37.037 9.84 10.14 45.17 3.46
4246 4498 8.399425 GGACTATCATGTATGATACTACTTCCG 58.601 40.741 9.84 2.53 45.17 4.30
4247 4499 8.865420 ACTATCATGTATGATACTACTTCCGT 57.135 34.615 9.84 3.03 45.17 4.69
4248 4500 9.955102 ACTATCATGTATGATACTACTTCCGTA 57.045 33.333 9.84 0.00 45.17 4.02
4252 4504 8.027189 TCATGTATGATACTACTTCCGTAATGC 58.973 37.037 4.03 0.00 0.00 3.56
4253 4505 7.279750 TGTATGATACTACTTCCGTAATGCA 57.720 36.000 4.03 0.00 0.00 3.96
4254 4506 7.892609 TGTATGATACTACTTCCGTAATGCAT 58.107 34.615 4.03 0.00 0.00 3.96
4255 4507 9.016438 TGTATGATACTACTTCCGTAATGCATA 57.984 33.333 0.00 0.00 0.00 3.14
4256 4508 9.504710 GTATGATACTACTTCCGTAATGCATAG 57.495 37.037 0.00 0.00 0.00 2.23
4257 4509 7.520451 TGATACTACTTCCGTAATGCATAGT 57.480 36.000 0.00 0.57 0.00 2.12
4258 4510 8.625786 TGATACTACTTCCGTAATGCATAGTA 57.374 34.615 0.00 1.91 0.00 1.82
4259 4511 9.239551 TGATACTACTTCCGTAATGCATAGTAT 57.760 33.333 11.08 11.08 37.18 2.12
4260 4512 9.719279 GATACTACTTCCGTAATGCATAGTATC 57.281 37.037 17.94 17.94 40.85 2.24
4261 4513 6.921914 ACTACTTCCGTAATGCATAGTATCC 58.078 40.000 0.00 0.00 0.00 2.59
4262 4514 6.720288 ACTACTTCCGTAATGCATAGTATCCT 59.280 38.462 0.00 0.00 0.00 3.24
4263 4515 7.886970 ACTACTTCCGTAATGCATAGTATCCTA 59.113 37.037 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.460311 ATCCTACAACCGAAGCTCCG 59.540 55.000 0.00 0.00 0.00 4.63
1 2 1.536284 CGATCCTACAACCGAAGCTCC 60.536 57.143 0.00 0.00 0.00 4.70
2 3 1.841450 CGATCCTACAACCGAAGCTC 58.159 55.000 0.00 0.00 0.00 4.09
3 4 0.179108 GCGATCCTACAACCGAAGCT 60.179 55.000 0.00 0.00 0.00 3.74
4 5 1.480219 CGCGATCCTACAACCGAAGC 61.480 60.000 0.00 0.00 0.00 3.86
5 6 0.099968 TCGCGATCCTACAACCGAAG 59.900 55.000 3.71 0.00 0.00 3.79
7 8 0.742505 ATTCGCGATCCTACAACCGA 59.257 50.000 10.88 0.00 0.00 4.69
8 9 1.129326 GATTCGCGATCCTACAACCG 58.871 55.000 10.88 0.00 0.00 4.44
9 10 2.218953 TGATTCGCGATCCTACAACC 57.781 50.000 10.88 0.00 33.60 3.77
10 11 4.795268 TCTATGATTCGCGATCCTACAAC 58.205 43.478 10.88 0.00 33.60 3.32
11 12 5.447624 TTCTATGATTCGCGATCCTACAA 57.552 39.130 10.88 0.00 33.60 2.41
12 13 5.416013 AGATTCTATGATTCGCGATCCTACA 59.584 40.000 10.88 6.65 33.60 2.74
13 14 5.885881 AGATTCTATGATTCGCGATCCTAC 58.114 41.667 10.88 0.42 33.60 3.18
14 15 6.151144 TGAAGATTCTATGATTCGCGATCCTA 59.849 38.462 10.88 6.52 33.60 2.94
15 16 5.047731 TGAAGATTCTATGATTCGCGATCCT 60.048 40.000 10.88 5.66 33.60 3.24
16 17 5.061560 GTGAAGATTCTATGATTCGCGATCC 59.938 44.000 10.88 5.36 33.60 3.36
17 18 5.861251 AGTGAAGATTCTATGATTCGCGATC 59.139 40.000 10.88 10.57 37.28 3.69
18 19 5.777802 AGTGAAGATTCTATGATTCGCGAT 58.222 37.500 10.88 0.00 37.28 4.58
19 20 5.188327 AGTGAAGATTCTATGATTCGCGA 57.812 39.130 3.71 3.71 37.28 5.87
20 21 6.803807 TGATAGTGAAGATTCTATGATTCGCG 59.196 38.462 0.00 0.00 37.28 5.87
21 22 8.026026 TCTGATAGTGAAGATTCTATGATTCGC 58.974 37.037 0.00 0.00 33.44 4.70
22 23 9.905171 TTCTGATAGTGAAGATTCTATGATTCG 57.095 33.333 0.00 0.00 0.00 3.34
26 27 9.072375 ACGATTCTGATAGTGAAGATTCTATGA 57.928 33.333 0.00 0.00 0.00 2.15
29 30 9.780186 TCTACGATTCTGATAGTGAAGATTCTA 57.220 33.333 0.00 0.00 0.00 2.10
30 31 8.684386 TCTACGATTCTGATAGTGAAGATTCT 57.316 34.615 0.00 0.00 0.00 2.40
31 32 9.737427 TTTCTACGATTCTGATAGTGAAGATTC 57.263 33.333 0.00 0.00 0.00 2.52
33 34 9.689976 CATTTCTACGATTCTGATAGTGAAGAT 57.310 33.333 0.00 0.00 0.00 2.40
34 35 8.687242 ACATTTCTACGATTCTGATAGTGAAGA 58.313 33.333 0.00 0.00 0.00 2.87
35 36 8.864069 ACATTTCTACGATTCTGATAGTGAAG 57.136 34.615 0.00 0.00 0.00 3.02
36 37 9.952188 CTACATTTCTACGATTCTGATAGTGAA 57.048 33.333 0.00 0.00 0.00 3.18
37 38 9.338622 TCTACATTTCTACGATTCTGATAGTGA 57.661 33.333 0.00 0.00 0.00 3.41
68 69 9.765795 CCCTATGATTCTACGATTTTAGTTCTT 57.234 33.333 0.00 0.00 0.00 2.52
69 70 8.368668 CCCCTATGATTCTACGATTTTAGTTCT 58.631 37.037 0.00 0.00 0.00 3.01
70 71 8.148999 ACCCCTATGATTCTACGATTTTAGTTC 58.851 37.037 0.00 0.00 0.00 3.01
71 72 8.030913 ACCCCTATGATTCTACGATTTTAGTT 57.969 34.615 0.00 0.00 0.00 2.24
72 73 7.613551 ACCCCTATGATTCTACGATTTTAGT 57.386 36.000 0.00 0.00 0.00 2.24
73 74 9.640963 CTAACCCCTATGATTCTACGATTTTAG 57.359 37.037 0.00 0.00 0.00 1.85
74 75 9.151177 ACTAACCCCTATGATTCTACGATTTTA 57.849 33.333 0.00 0.00 0.00 1.52
75 76 8.030913 ACTAACCCCTATGATTCTACGATTTT 57.969 34.615 0.00 0.00 0.00 1.82
76 77 7.613551 ACTAACCCCTATGATTCTACGATTT 57.386 36.000 0.00 0.00 0.00 2.17
77 78 7.613551 AACTAACCCCTATGATTCTACGATT 57.386 36.000 0.00 0.00 0.00 3.34
78 79 7.613551 AAACTAACCCCTATGATTCTACGAT 57.386 36.000 0.00 0.00 0.00 3.73
79 80 8.000709 TCTAAACTAACCCCTATGATTCTACGA 58.999 37.037 0.00 0.00 0.00 3.43
80 81 8.174733 TCTAAACTAACCCCTATGATTCTACG 57.825 38.462 0.00 0.00 0.00 3.51
83 84 9.095700 GAGATCTAAACTAACCCCTATGATTCT 57.904 37.037 0.00 0.00 0.00 2.40
84 85 8.871125 TGAGATCTAAACTAACCCCTATGATTC 58.129 37.037 0.00 0.00 0.00 2.52
85 86 8.798975 TGAGATCTAAACTAACCCCTATGATT 57.201 34.615 0.00 0.00 0.00 2.57
86 87 8.798975 TTGAGATCTAAACTAACCCCTATGAT 57.201 34.615 0.00 0.00 0.00 2.45
87 88 8.618240 TTTGAGATCTAAACTAACCCCTATGA 57.382 34.615 0.00 0.00 0.00 2.15
88 89 8.487028 ACTTTGAGATCTAAACTAACCCCTATG 58.513 37.037 0.00 0.00 0.00 2.23
89 90 8.625467 ACTTTGAGATCTAAACTAACCCCTAT 57.375 34.615 0.00 0.00 0.00 2.57
90 91 7.147949 CGACTTTGAGATCTAAACTAACCCCTA 60.148 40.741 0.00 0.00 0.00 3.53
91 92 6.351117 CGACTTTGAGATCTAAACTAACCCCT 60.351 42.308 0.00 0.00 0.00 4.79
92 93 5.811100 CGACTTTGAGATCTAAACTAACCCC 59.189 44.000 0.00 0.00 0.00 4.95
93 94 6.396450 ACGACTTTGAGATCTAAACTAACCC 58.604 40.000 0.00 0.00 0.00 4.11
94 95 8.457261 TCTACGACTTTGAGATCTAAACTAACC 58.543 37.037 0.00 0.00 0.00 2.85
95 96 9.837525 TTCTACGACTTTGAGATCTAAACTAAC 57.162 33.333 0.00 0.00 0.00 2.34
98 99 7.911205 CGATTCTACGACTTTGAGATCTAAACT 59.089 37.037 0.00 0.00 35.09 2.66
99 100 7.697291 ACGATTCTACGACTTTGAGATCTAAAC 59.303 37.037 0.00 0.00 37.03 2.01
100 101 7.759465 ACGATTCTACGACTTTGAGATCTAAA 58.241 34.615 0.00 0.00 37.03 1.85
101 102 7.317842 ACGATTCTACGACTTTGAGATCTAA 57.682 36.000 0.00 0.00 37.03 2.10
102 103 6.922247 ACGATTCTACGACTTTGAGATCTA 57.078 37.500 0.00 0.00 37.03 1.98
103 104 5.821516 ACGATTCTACGACTTTGAGATCT 57.178 39.130 0.00 0.00 37.03 2.75
104 105 9.105206 GTTATACGATTCTACGACTTTGAGATC 57.895 37.037 0.00 0.00 37.03 2.75
105 106 8.618677 TGTTATACGATTCTACGACTTTGAGAT 58.381 33.333 0.00 0.00 37.03 2.75
106 107 7.977904 TGTTATACGATTCTACGACTTTGAGA 58.022 34.615 0.00 0.00 37.03 3.27
107 108 8.121086 TCTGTTATACGATTCTACGACTTTGAG 58.879 37.037 0.00 0.00 37.03 3.02
108 109 7.977904 TCTGTTATACGATTCTACGACTTTGA 58.022 34.615 0.00 0.00 37.03 2.69
109 110 8.610855 TTCTGTTATACGATTCTACGACTTTG 57.389 34.615 0.00 0.00 37.03 2.77
110 111 9.448294 GATTCTGTTATACGATTCTACGACTTT 57.552 33.333 0.00 0.00 37.03 2.66
111 112 7.797587 CGATTCTGTTATACGATTCTACGACTT 59.202 37.037 0.00 0.00 37.03 3.01
112 113 7.289395 CGATTCTGTTATACGATTCTACGACT 58.711 38.462 0.00 0.00 37.03 4.18
113 114 6.031210 GCGATTCTGTTATACGATTCTACGAC 59.969 42.308 0.00 0.00 37.03 4.34
114 115 6.075918 GCGATTCTGTTATACGATTCTACGA 58.924 40.000 0.00 0.00 37.03 3.43
115 116 5.001359 CGCGATTCTGTTATACGATTCTACG 59.999 44.000 0.00 0.00 39.31 3.51
116 117 6.075918 TCGCGATTCTGTTATACGATTCTAC 58.924 40.000 3.71 0.00 0.00 2.59
117 118 6.232139 TCGCGATTCTGTTATACGATTCTA 57.768 37.500 3.71 0.00 0.00 2.10
118 119 5.104562 TCGCGATTCTGTTATACGATTCT 57.895 39.130 3.71 0.00 0.00 2.40
119 120 5.994235 ATCGCGATTCTGTTATACGATTC 57.006 39.130 17.62 0.00 35.44 2.52
121 122 5.994235 GAATCGCGATTCTGTTATACGAT 57.006 39.130 40.72 16.39 42.85 3.73
132 133 2.271800 AGGTTGTCAGAATCGCGATTC 58.728 47.619 41.15 41.15 45.66 2.52
133 134 2.386661 AGGTTGTCAGAATCGCGATT 57.613 45.000 32.97 32.97 0.00 3.34
134 135 2.427453 AGTAGGTTGTCAGAATCGCGAT 59.573 45.455 17.62 17.62 0.00 4.58
135 136 1.816835 AGTAGGTTGTCAGAATCGCGA 59.183 47.619 13.09 13.09 0.00 5.87
136 137 1.920574 CAGTAGGTTGTCAGAATCGCG 59.079 52.381 0.00 0.00 0.00 5.87
137 138 2.924290 GACAGTAGGTTGTCAGAATCGC 59.076 50.000 1.54 0.00 45.32 4.58
138 139 3.172050 CGACAGTAGGTTGTCAGAATCG 58.828 50.000 6.91 0.00 46.11 3.34
139 140 4.175787 ACGACAGTAGGTTGTCAGAATC 57.824 45.455 6.91 0.00 46.11 2.52
147 148 2.502213 TGTGTGACGACAGTAGGTTG 57.498 50.000 0.00 0.00 36.90 3.77
148 149 3.069016 TCAATGTGTGACGACAGTAGGTT 59.931 43.478 0.00 0.00 30.74 3.50
149 150 2.626266 TCAATGTGTGACGACAGTAGGT 59.374 45.455 0.00 0.00 30.74 3.08
150 151 3.297830 TCAATGTGTGACGACAGTAGG 57.702 47.619 0.00 0.00 30.74 3.18
151 152 4.327357 GGATTCAATGTGTGACGACAGTAG 59.673 45.833 0.00 0.00 35.39 2.57
152 153 4.021456 AGGATTCAATGTGTGACGACAGTA 60.021 41.667 0.00 0.00 35.39 2.74
153 154 3.067106 GGATTCAATGTGTGACGACAGT 58.933 45.455 0.00 0.00 35.39 3.55
154 155 3.329386 AGGATTCAATGTGTGACGACAG 58.671 45.455 0.00 0.00 35.39 3.51
155 156 3.401033 AGGATTCAATGTGTGACGACA 57.599 42.857 0.00 0.00 35.39 4.35
156 157 4.495422 AGTAGGATTCAATGTGTGACGAC 58.505 43.478 0.00 0.00 35.39 4.34
157 158 4.801330 AGTAGGATTCAATGTGTGACGA 57.199 40.909 0.00 0.00 35.39 4.20
158 159 4.929211 TCAAGTAGGATTCAATGTGTGACG 59.071 41.667 0.00 0.00 35.39 4.35
159 160 6.992063 ATCAAGTAGGATTCAATGTGTGAC 57.008 37.500 0.00 0.00 35.39 3.67
160 161 6.942005 ACAATCAAGTAGGATTCAATGTGTGA 59.058 34.615 0.00 0.00 35.37 3.58
161 162 7.120285 AGACAATCAAGTAGGATTCAATGTGTG 59.880 37.037 0.00 0.00 35.37 3.82
162 163 7.170965 AGACAATCAAGTAGGATTCAATGTGT 58.829 34.615 0.00 0.00 35.37 3.72
163 164 7.621428 AGACAATCAAGTAGGATTCAATGTG 57.379 36.000 0.00 0.00 35.37 3.21
164 165 9.334947 CATAGACAATCAAGTAGGATTCAATGT 57.665 33.333 0.00 0.00 35.37 2.71
165 166 8.781196 CCATAGACAATCAAGTAGGATTCAATG 58.219 37.037 0.00 0.00 35.37 2.82
166 167 8.717717 TCCATAGACAATCAAGTAGGATTCAAT 58.282 33.333 0.00 0.00 35.37 2.57
167 168 8.089625 TCCATAGACAATCAAGTAGGATTCAA 57.910 34.615 0.00 0.00 35.37 2.69
168 169 7.565029 TCTCCATAGACAATCAAGTAGGATTCA 59.435 37.037 0.00 0.00 35.37 2.57
169 170 7.957002 TCTCCATAGACAATCAAGTAGGATTC 58.043 38.462 0.00 0.00 35.37 2.52
170 171 7.921041 TCTCCATAGACAATCAAGTAGGATT 57.079 36.000 0.00 0.00 37.99 3.01
171 172 7.921041 TTCTCCATAGACAATCAAGTAGGAT 57.079 36.000 0.00 0.00 0.00 3.24
172 173 7.733773 TTTCTCCATAGACAATCAAGTAGGA 57.266 36.000 0.00 0.00 0.00 2.94
173 174 7.824289 TGTTTTCTCCATAGACAATCAAGTAGG 59.176 37.037 0.00 0.00 0.00 3.18
174 175 8.777865 TGTTTTCTCCATAGACAATCAAGTAG 57.222 34.615 0.00 0.00 0.00 2.57
175 176 9.166173 CATGTTTTCTCCATAGACAATCAAGTA 57.834 33.333 0.00 0.00 0.00 2.24
176 177 7.884877 TCATGTTTTCTCCATAGACAATCAAGT 59.115 33.333 0.00 0.00 0.00 3.16
177 178 8.272545 TCATGTTTTCTCCATAGACAATCAAG 57.727 34.615 0.00 0.00 0.00 3.02
178 179 8.812513 ATCATGTTTTCTCCATAGACAATCAA 57.187 30.769 0.00 0.00 0.00 2.57
179 180 8.812513 AATCATGTTTTCTCCATAGACAATCA 57.187 30.769 0.00 0.00 0.00 2.57
180 181 9.118300 AGAATCATGTTTTCTCCATAGACAATC 57.882 33.333 7.55 0.00 0.00 2.67
181 182 9.471702 AAGAATCATGTTTTCTCCATAGACAAT 57.528 29.630 12.09 0.00 32.33 2.71
182 183 8.868522 AAGAATCATGTTTTCTCCATAGACAA 57.131 30.769 12.09 0.00 32.33 3.18
183 184 8.102676 TGAAGAATCATGTTTTCTCCATAGACA 58.897 33.333 12.09 0.00 32.33 3.41
184 185 8.394121 GTGAAGAATCATGTTTTCTCCATAGAC 58.606 37.037 12.09 3.26 38.01 2.59
185 186 7.278646 CGTGAAGAATCATGTTTTCTCCATAGA 59.721 37.037 12.09 0.00 38.01 1.98
186 187 7.404985 CGTGAAGAATCATGTTTTCTCCATAG 58.595 38.462 12.09 4.03 38.01 2.23
187 188 7.307493 CGTGAAGAATCATGTTTTCTCCATA 57.693 36.000 12.09 1.04 38.01 2.74
188 189 6.187125 CGTGAAGAATCATGTTTTCTCCAT 57.813 37.500 12.09 0.79 38.01 3.41
189 190 5.611796 CGTGAAGAATCATGTTTTCTCCA 57.388 39.130 12.09 5.42 38.01 3.86
206 207 5.765677 TCCATCCACTTCAAATTTACGTGAA 59.234 36.000 0.00 0.00 32.91 3.18
207 208 5.309638 TCCATCCACTTCAAATTTACGTGA 58.690 37.500 0.00 0.00 0.00 4.35
208 209 5.621197 TCCATCCACTTCAAATTTACGTG 57.379 39.130 0.00 0.00 0.00 4.49
209 210 6.834168 AATCCATCCACTTCAAATTTACGT 57.166 33.333 0.00 0.00 0.00 3.57
210 211 8.532977 AAAAATCCATCCACTTCAAATTTACG 57.467 30.769 0.00 0.00 0.00 3.18
234 235 5.754782 TGCCATAGATTCTAGCAGGAAAAA 58.245 37.500 11.67 0.00 0.00 1.94
235 236 5.372343 TGCCATAGATTCTAGCAGGAAAA 57.628 39.130 11.67 0.00 0.00 2.29
236 237 5.573380 ATGCCATAGATTCTAGCAGGAAA 57.427 39.130 11.77 2.64 36.80 3.13
237 238 6.441604 TCATATGCCATAGATTCTAGCAGGAA 59.558 38.462 11.77 4.05 36.80 3.36
238 239 5.960202 TCATATGCCATAGATTCTAGCAGGA 59.040 40.000 11.77 7.65 36.80 3.86
239 240 6.231258 TCATATGCCATAGATTCTAGCAGG 57.769 41.667 11.77 8.70 36.80 4.85
242 243 8.905660 ATGATTCATATGCCATAGATTCTAGC 57.094 34.615 0.00 0.00 0.00 3.42
251 252 8.694581 TTTCTTGTGATGATTCATATGCCATA 57.305 30.769 0.00 0.00 33.56 2.74
299 300 2.844348 GGGACCTCTTTCATTGGTAGGA 59.156 50.000 0.00 0.00 33.74 2.94
300 301 2.576191 TGGGACCTCTTTCATTGGTAGG 59.424 50.000 0.00 0.00 33.74 3.18
301 302 4.010349 GTTGGGACCTCTTTCATTGGTAG 58.990 47.826 0.00 0.00 33.74 3.18
304 309 2.875296 TGTTGGGACCTCTTTCATTGG 58.125 47.619 0.00 0.00 0.00 3.16
309 314 4.715713 AGTACTTTGTTGGGACCTCTTTC 58.284 43.478 0.00 0.00 0.00 2.62
336 341 9.529823 TCTCAAGGACTTTCTTACTACTTATGA 57.470 33.333 0.00 0.00 0.00 2.15
340 345 9.901172 TTTTTCTCAAGGACTTTCTTACTACTT 57.099 29.630 0.00 0.00 0.00 2.24
371 376 8.427902 TCTGCACTGATAGATAGTTTCCATAT 57.572 34.615 0.00 0.00 0.00 1.78
380 385 6.619744 ACGATTCATCTGCACTGATAGATAG 58.380 40.000 0.00 0.00 32.62 2.08
381 386 6.581171 ACGATTCATCTGCACTGATAGATA 57.419 37.500 0.00 0.00 32.62 1.98
382 387 5.465532 ACGATTCATCTGCACTGATAGAT 57.534 39.130 0.00 0.00 34.09 1.98
383 388 4.926140 ACGATTCATCTGCACTGATAGA 57.074 40.909 0.00 0.00 0.00 1.98
429 436 4.227864 AGGGCTCTTTGATTGGTAGAAG 57.772 45.455 0.00 0.00 0.00 2.85
1320 1371 0.877649 CCTTGGCGTCCATGATCTCG 60.878 60.000 11.56 0.00 31.53 4.04
1476 1530 2.097733 GCGTCCGTGCGTAAATACATAC 60.098 50.000 0.00 0.00 0.00 2.39
1490 1544 2.799371 GATCGAGAAGGCGTCCGT 59.201 61.111 9.97 0.00 0.00 4.69
1520 1574 9.145865 GAGATAATTAGGGATCACGAAGAATTC 57.854 37.037 0.00 0.00 43.09 2.17
1529 1583 6.671779 AGATGAGGGAGATAATTAGGGATCAC 59.328 42.308 0.00 0.00 0.00 3.06
1530 1584 6.820205 AGATGAGGGAGATAATTAGGGATCA 58.180 40.000 0.00 0.00 0.00 2.92
1591 1666 1.325943 GATCAAACGAGTAGCAGCAGC 59.674 52.381 0.00 0.00 42.56 5.25
1592 1667 2.886081 AGATCAAACGAGTAGCAGCAG 58.114 47.619 0.00 0.00 0.00 4.24
1640 1715 6.670695 AAGGAATCAAATTAACAGCTTGGT 57.329 33.333 0.00 0.00 0.00 3.67
1752 1827 2.125552 TCGCAAGATCCGTGCTGG 60.126 61.111 15.00 3.34 45.01 4.85
1795 1870 3.015327 GGTACTACGGTGATCACAGACT 58.985 50.000 29.18 12.76 0.00 3.24
1796 1871 2.751259 TGGTACTACGGTGATCACAGAC 59.249 50.000 29.18 17.40 0.00 3.51
1797 1872 3.076079 TGGTACTACGGTGATCACAGA 57.924 47.619 29.18 13.66 0.00 3.41
1799 1874 4.202233 TGTTTTGGTACTACGGTGATCACA 60.202 41.667 26.47 6.19 0.00 3.58
1800 1875 4.151157 GTGTTTTGGTACTACGGTGATCAC 59.849 45.833 17.91 17.91 0.00 3.06
1801 1876 4.202233 TGTGTTTTGGTACTACGGTGATCA 60.202 41.667 0.00 0.00 0.00 2.92
1805 1880 4.512198 TCATTGTGTTTTGGTACTACGGTG 59.488 41.667 0.00 0.00 0.00 4.94
1808 1883 6.487960 TGTTTCATTGTGTTTTGGTACTACG 58.512 36.000 0.00 0.00 0.00 3.51
1840 1915 2.265182 GCTGCCGGTTTACAAGCCA 61.265 57.895 1.90 0.00 0.00 4.75
1877 1952 3.544684 CATATTGGTGCAAGACCTAGCA 58.455 45.455 0.00 0.00 46.32 3.49
1888 1963 5.824624 AGTATGGCTATATGCATATTGGTGC 59.175 40.000 23.71 19.93 45.15 5.01
1907 1982 6.219473 AGTGAAATTGATCGAGCCTAGTATG 58.781 40.000 0.00 0.00 0.00 2.39
2023 2098 7.706281 TTAACACAGGTTATTTTGCATTGTG 57.294 32.000 0.00 0.00 39.15 3.33
2131 2213 7.067372 CCATCTCCAAGATAAAACATTAGCACA 59.933 37.037 0.00 0.00 32.12 4.57
2132 2214 7.420800 CCATCTCCAAGATAAAACATTAGCAC 58.579 38.462 0.00 0.00 32.12 4.40
2137 2219 9.713684 TTAATCCCATCTCCAAGATAAAACATT 57.286 29.630 0.00 0.00 32.12 2.71
2144 2226 7.465900 ACCTTTTAATCCCATCTCCAAGATA 57.534 36.000 0.00 0.00 32.12 1.98
2149 2231 4.472108 ACGTACCTTTTAATCCCATCTCCA 59.528 41.667 0.00 0.00 0.00 3.86
2156 2238 5.295045 CACCATGTACGTACCTTTTAATCCC 59.705 44.000 22.43 0.00 0.00 3.85
2169 2251 4.461431 TCACTCAGATAACACCATGTACGT 59.539 41.667 0.00 0.00 0.00 3.57
2170 2252 4.993905 TCACTCAGATAACACCATGTACG 58.006 43.478 0.00 0.00 0.00 3.67
2171 2253 7.489160 TGTATCACTCAGATAACACCATGTAC 58.511 38.462 0.00 0.00 40.76 2.90
2174 2409 7.011763 CCTTTGTATCACTCAGATAACACCATG 59.988 40.741 0.00 0.00 40.76 3.66
2175 2410 7.050377 CCTTTGTATCACTCAGATAACACCAT 58.950 38.462 0.00 0.00 40.76 3.55
2179 2414 6.212589 TCCACCTTTGTATCACTCAGATAACA 59.787 38.462 0.00 0.00 40.76 2.41
2183 2418 4.382040 CGTCCACCTTTGTATCACTCAGAT 60.382 45.833 0.00 0.00 40.86 2.90
2184 2419 3.056821 CGTCCACCTTTGTATCACTCAGA 60.057 47.826 0.00 0.00 0.00 3.27
2185 2420 3.254060 CGTCCACCTTTGTATCACTCAG 58.746 50.000 0.00 0.00 0.00 3.35
2198 2433 2.824341 CTCCTAACTGTTACGTCCACCT 59.176 50.000 0.00 0.00 0.00 4.00
2200 2435 2.094338 CCCTCCTAACTGTTACGTCCAC 60.094 54.545 0.00 0.00 0.00 4.02
2201 2436 2.173519 CCCTCCTAACTGTTACGTCCA 58.826 52.381 0.00 0.00 0.00 4.02
2202 2437 2.450476 TCCCTCCTAACTGTTACGTCC 58.550 52.381 0.00 0.00 0.00 4.79
2203 2438 4.525912 TTTCCCTCCTAACTGTTACGTC 57.474 45.455 0.00 0.00 0.00 4.34
2204 2439 4.961438 TTTTCCCTCCTAACTGTTACGT 57.039 40.909 0.00 0.00 0.00 3.57
2205 2440 6.171213 AGATTTTTCCCTCCTAACTGTTACG 58.829 40.000 0.00 0.00 0.00 3.18
2206 2441 7.997773 AAGATTTTTCCCTCCTAACTGTTAC 57.002 36.000 0.00 0.00 0.00 2.50
2207 2442 8.221944 TGAAAGATTTTTCCCTCCTAACTGTTA 58.778 33.333 6.28 0.00 41.62 2.41
2208 2443 7.066781 TGAAAGATTTTTCCCTCCTAACTGTT 58.933 34.615 6.28 0.00 41.62 3.16
2362 2602 0.952984 GAGCAGAAGCAGCGGTTTCT 60.953 55.000 10.01 10.01 44.25 2.52
2637 2881 8.500753 TTACAAGCTGTTAATACAATAGTGGG 57.499 34.615 0.00 0.00 32.92 4.61
2756 3003 0.389037 CCATCATCGTCATCGCCGAT 60.389 55.000 0.00 0.00 45.31 4.18
2783 3030 3.235481 TCTTCGTCGCCCCCAACA 61.235 61.111 0.00 0.00 0.00 3.33
2981 3228 2.981302 CCCAGCGTGGTGATCTCA 59.019 61.111 0.00 0.00 35.17 3.27
3088 3335 3.838271 GCCTCCGGTGAGATGCGA 61.838 66.667 4.76 0.00 41.42 5.10
3161 3408 3.640000 GTGTCGTTGCTGCACGCT 61.640 61.111 16.13 0.00 40.14 5.07
3202 3449 4.838152 TCTTGATGCTCCCGCCGC 62.838 66.667 0.00 0.00 34.43 6.53
3203 3450 2.587194 CTCTTGATGCTCCCGCCG 60.587 66.667 0.00 0.00 34.43 6.46
3204 3451 2.203126 CCTCTTGATGCTCCCGCC 60.203 66.667 0.00 0.00 34.43 6.13
3205 3452 2.899339 GCCTCTTGATGCTCCCGC 60.899 66.667 0.00 0.00 0.00 6.13
3206 3453 1.523258 CTGCCTCTTGATGCTCCCG 60.523 63.158 0.21 0.00 0.00 5.14
3207 3454 1.823041 GCTGCCTCTTGATGCTCCC 60.823 63.158 0.00 0.00 0.00 4.30
3315 3562 1.832411 GCTACGCTAATCGCCAAGGC 61.832 60.000 0.00 0.00 43.23 4.35
3370 3617 3.211045 CACCATTATACCCAAAGGACCG 58.789 50.000 0.00 0.00 36.73 4.79
3836 4084 0.325296 TCCCCGTATGAAGGCTGACT 60.325 55.000 0.00 0.00 0.00 3.41
3999 4247 5.990408 ACGTTTCTGAATCTGTGAATCAAC 58.010 37.500 0.00 0.00 0.00 3.18
4001 4249 5.560760 GCAACGTTTCTGAATCTGTGAATCA 60.561 40.000 0.00 0.00 0.00 2.57
4066 4314 7.169308 ACAGTAGTTCAAAGTGACTCAATAACG 59.831 37.037 0.00 0.00 0.00 3.18
4073 4321 4.025647 GCACACAGTAGTTCAAAGTGACTC 60.026 45.833 0.00 0.00 34.47 3.36
4106 4358 2.424246 GGAGACCTAGAAACTCCACGAG 59.576 54.545 18.25 0.00 46.42 4.18
4107 4359 2.444421 GGAGACCTAGAAACTCCACGA 58.556 52.381 18.25 0.00 46.42 4.35
4108 4360 2.943449 GGAGACCTAGAAACTCCACG 57.057 55.000 18.25 0.00 46.42 4.94
4123 4375 0.827925 AGCACAGGACTCAACGGAGA 60.828 55.000 0.00 0.00 44.26 3.71
4124 4376 0.888619 TAGCACAGGACTCAACGGAG 59.111 55.000 0.00 0.00 46.96 4.63
4156 4408 4.343811 TTTACAGGTGAACACAAACACG 57.656 40.909 7.25 0.00 37.82 4.49
4181 4433 8.745590 GCCTAATATAAAGGGAGAACACAAAAA 58.254 33.333 6.25 0.00 34.46 1.94
4193 4445 6.204108 CGTTACAACCAGCCTAATATAAAGGG 59.796 42.308 6.25 0.00 34.46 3.95
4203 4455 1.547372 GTCCTCGTTACAACCAGCCTA 59.453 52.381 0.00 0.00 0.00 3.93
4204 4456 0.320697 GTCCTCGTTACAACCAGCCT 59.679 55.000 0.00 0.00 0.00 4.58
4205 4457 0.320697 AGTCCTCGTTACAACCAGCC 59.679 55.000 0.00 0.00 0.00 4.85
4206 4458 3.119245 TGATAGTCCTCGTTACAACCAGC 60.119 47.826 0.00 0.00 0.00 4.85
4207 4459 4.713824 TGATAGTCCTCGTTACAACCAG 57.286 45.455 0.00 0.00 0.00 4.00
4208 4460 4.464951 ACATGATAGTCCTCGTTACAACCA 59.535 41.667 0.00 0.00 0.00 3.67
4209 4461 5.007385 ACATGATAGTCCTCGTTACAACC 57.993 43.478 0.00 0.00 0.00 3.77
4210 4462 7.423199 TCATACATGATAGTCCTCGTTACAAC 58.577 38.462 0.00 0.00 0.00 3.32
4211 4463 7.576861 TCATACATGATAGTCCTCGTTACAA 57.423 36.000 0.00 0.00 0.00 2.41
4212 4464 7.761038 ATCATACATGATAGTCCTCGTTACA 57.239 36.000 0.00 0.00 45.17 2.41
4213 4465 8.948145 AGTATCATACATGATAGTCCTCGTTAC 58.052 37.037 11.34 0.68 45.58 2.50
4215 4467 8.948145 GTAGTATCATACATGATAGTCCTCGTT 58.052 37.037 18.49 0.00 45.58 3.85
4216 4468 8.322828 AGTAGTATCATACATGATAGTCCTCGT 58.677 37.037 18.49 3.29 45.58 4.18
4217 4469 8.725405 AGTAGTATCATACATGATAGTCCTCG 57.275 38.462 18.49 0.00 45.58 4.63
4219 4471 9.469097 GGAAGTAGTATCATACATGATAGTCCT 57.531 37.037 18.49 12.39 45.58 3.85
4220 4472 8.399425 CGGAAGTAGTATCATACATGATAGTCC 58.601 40.741 18.49 13.83 45.58 3.85
4221 4473 8.948145 ACGGAAGTAGTATCATACATGATAGTC 58.052 37.037 18.49 12.35 46.65 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.