Multiple sequence alignment - TraesCS5D01G237200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G237200 chr5D 100.000 2480 0 0 1 2480 345680049 345682528 0.000000e+00 4580.0
1 TraesCS5D01G237200 chr5D 97.768 896 16 3 1 893 270883211 270882317 0.000000e+00 1541.0
2 TraesCS5D01G237200 chr5D 97.534 892 21 1 1 892 345671472 345672362 0.000000e+00 1524.0
3 TraesCS5D01G237200 chr5D 80.108 186 28 8 2048 2228 381829999 381829818 2.000000e-26 130.0
4 TraesCS5D01G237200 chr3D 94.836 1162 44 6 891 2049 384009460 384010608 0.000000e+00 1799.0
5 TraesCS5D01G237200 chr3D 97.780 901 15 3 1 896 76019832 76020732 0.000000e+00 1548.0
6 TraesCS5D01G237200 chr3D 97.760 893 16 3 1 891 47319606 47320496 0.000000e+00 1535.0
7 TraesCS5D01G237200 chr3D 97.643 891 17 4 1 890 113471133 113470246 0.000000e+00 1526.0
8 TraesCS5D01G237200 chrUn 94.660 1161 45 7 891 2048 122647608 122648754 0.000000e+00 1784.0
9 TraesCS5D01G237200 chr7A 94.492 1162 47 7 891 2049 606194071 606195218 0.000000e+00 1775.0
10 TraesCS5D01G237200 chr4B 94.340 1166 47 9 891 2053 2711231 2710082 0.000000e+00 1770.0
11 TraesCS5D01G237200 chr4B 93.017 1160 63 8 893 2049 97791763 97790619 0.000000e+00 1677.0
12 TraesCS5D01G237200 chr4B 79.083 349 59 13 2048 2390 116475380 116475040 6.900000e-56 228.0
13 TraesCS5D01G237200 chr6B 93.926 1169 52 8 891 2054 690878046 690876892 0.000000e+00 1748.0
14 TraesCS5D01G237200 chr6B 95.858 338 12 1 1717 2052 59734805 59734468 1.680000e-151 545.0
15 TraesCS5D01G237200 chr1A 94.077 1165 46 13 892 2049 2283622 2282474 0.000000e+00 1748.0
16 TraesCS5D01G237200 chr1A 95.224 335 14 1 1717 2049 329178783 329179117 1.690000e-146 529.0
17 TraesCS5D01G237200 chr5B 94.405 1126 46 7 926 2048 474614190 474613079 0.000000e+00 1714.0
18 TraesCS5D01G237200 chr5B 93.088 434 27 3 2048 2480 406046610 406046179 1.250000e-177 632.0
19 TraesCS5D01G237200 chr5B 85.586 111 14 2 2061 2169 121898805 121898915 5.600000e-22 115.0
20 TraesCS5D01G237200 chr7B 93.109 1161 63 7 891 2048 51266690 51267836 0.000000e+00 1685.0
21 TraesCS5D01G237200 chr1D 97.640 890 19 2 1 890 285712832 285711945 0.000000e+00 1526.0
22 TraesCS5D01G237200 chr1D 97.534 892 20 2 1 890 335562648 335561757 0.000000e+00 1524.0
23 TraesCS5D01G237200 chr1D 97.427 894 21 2 1 892 37400403 37399510 0.000000e+00 1522.0
24 TraesCS5D01G237200 chr2D 97.531 891 17 5 1 890 569213430 569214316 0.000000e+00 1519.0
25 TraesCS5D01G237200 chr2A 92.985 670 30 10 1383 2049 572845732 572846387 0.000000e+00 961.0
26 TraesCS5D01G237200 chr2A 75.556 180 36 8 2139 2313 697306627 697306451 5.680000e-12 82.4
27 TraesCS5D01G237200 chr5A 96.774 434 12 2 2048 2480 445425450 445425018 0.000000e+00 723.0
28 TraesCS5D01G237200 chr5A 95.280 339 12 1 1717 2051 705598760 705598422 3.630000e-148 534.0
29 TraesCS5D01G237200 chr7D 87.097 124 14 2 2048 2169 351312148 351312025 3.330000e-29 139.0
30 TraesCS5D01G237200 chr3B 85.714 119 15 2 2052 2168 66414122 66414240 9.310000e-25 124.0
31 TraesCS5D01G237200 chr2B 84.874 119 16 2 2053 2169 363803059 363803177 4.330000e-23 119.0
32 TraesCS5D01G237200 chr6D 84.034 119 17 2 2048 2164 445889451 445889569 2.020000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G237200 chr5D 345680049 345682528 2479 False 4580 4580 100.000 1 2480 1 chr5D.!!$F2 2479
1 TraesCS5D01G237200 chr5D 270882317 270883211 894 True 1541 1541 97.768 1 893 1 chr5D.!!$R1 892
2 TraesCS5D01G237200 chr5D 345671472 345672362 890 False 1524 1524 97.534 1 892 1 chr5D.!!$F1 891
3 TraesCS5D01G237200 chr3D 384009460 384010608 1148 False 1799 1799 94.836 891 2049 1 chr3D.!!$F3 1158
4 TraesCS5D01G237200 chr3D 76019832 76020732 900 False 1548 1548 97.780 1 896 1 chr3D.!!$F2 895
5 TraesCS5D01G237200 chr3D 47319606 47320496 890 False 1535 1535 97.760 1 891 1 chr3D.!!$F1 890
6 TraesCS5D01G237200 chr3D 113470246 113471133 887 True 1526 1526 97.643 1 890 1 chr3D.!!$R1 889
7 TraesCS5D01G237200 chrUn 122647608 122648754 1146 False 1784 1784 94.660 891 2048 1 chrUn.!!$F1 1157
8 TraesCS5D01G237200 chr7A 606194071 606195218 1147 False 1775 1775 94.492 891 2049 1 chr7A.!!$F1 1158
9 TraesCS5D01G237200 chr4B 2710082 2711231 1149 True 1770 1770 94.340 891 2053 1 chr4B.!!$R1 1162
10 TraesCS5D01G237200 chr4B 97790619 97791763 1144 True 1677 1677 93.017 893 2049 1 chr4B.!!$R2 1156
11 TraesCS5D01G237200 chr6B 690876892 690878046 1154 True 1748 1748 93.926 891 2054 1 chr6B.!!$R2 1163
12 TraesCS5D01G237200 chr1A 2282474 2283622 1148 True 1748 1748 94.077 892 2049 1 chr1A.!!$R1 1157
13 TraesCS5D01G237200 chr5B 474613079 474614190 1111 True 1714 1714 94.405 926 2048 1 chr5B.!!$R2 1122
14 TraesCS5D01G237200 chr7B 51266690 51267836 1146 False 1685 1685 93.109 891 2048 1 chr7B.!!$F1 1157
15 TraesCS5D01G237200 chr1D 285711945 285712832 887 True 1526 1526 97.640 1 890 1 chr1D.!!$R2 889
16 TraesCS5D01G237200 chr1D 335561757 335562648 891 True 1524 1524 97.534 1 890 1 chr1D.!!$R3 889
17 TraesCS5D01G237200 chr1D 37399510 37400403 893 True 1522 1522 97.427 1 892 1 chr1D.!!$R1 891
18 TraesCS5D01G237200 chr2D 569213430 569214316 886 False 1519 1519 97.531 1 890 1 chr2D.!!$F1 889
19 TraesCS5D01G237200 chr2A 572845732 572846387 655 False 961 961 92.985 1383 2049 1 chr2A.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 865 0.819259 ACCATGTTCTTGCGTGTGCT 60.819 50.0 0.0 0.0 43.34 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 2362 0.029989 ATACCCCCTCTCCTTCCACC 60.03 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.965387 CGCTTAACGTTACGATGACC 57.035 50.000 13.03 0.00 36.87 4.02
146 147 6.468319 CGTAAAGATCGATATATTGGACGACC 59.532 42.308 0.00 0.00 37.58 4.79
473 478 3.308188 GCTCCTTTATATACGGGGGCAAT 60.308 47.826 16.12 0.00 44.12 3.56
726 736 1.705256 GTGCGTTCGGTACTTGATCA 58.295 50.000 0.00 0.00 0.00 2.92
854 865 0.819259 ACCATGTTCTTGCGTGTGCT 60.819 50.000 0.00 0.00 43.34 4.40
1053 1066 1.455383 GGAAGTATGCAATGGGCCCG 61.455 60.000 19.37 3.55 43.89 6.13
1127 1140 1.288932 CATGGAGGGGGAAGGAACAAT 59.711 52.381 0.00 0.00 0.00 2.71
1303 1316 0.453950 GCGTGAGATTGCAAGTGCTG 60.454 55.000 4.94 0.00 42.66 4.41
1459 1472 7.884877 ACTTTGTGAAGATGGATGATGAAGTTA 59.115 33.333 0.00 0.00 36.69 2.24
1477 1490 6.260050 TGAAGTTAGAAAAGCATCGTTCAAGT 59.740 34.615 0.00 0.00 0.00 3.16
1683 1699 8.347004 TGCTTCAAATTAAGGTTATCATGTGA 57.653 30.769 0.00 0.00 0.00 3.58
1685 1701 9.241317 GCTTCAAATTAAGGTTATCATGTGATG 57.759 33.333 5.78 0.00 36.05 3.07
1686 1702 9.241317 CTTCAAATTAAGGTTATCATGTGATGC 57.759 33.333 5.78 0.00 36.05 3.91
1687 1703 8.291191 TCAAATTAAGGTTATCATGTGATGCA 57.709 30.769 5.78 0.00 36.05 3.96
1688 1704 8.190122 TCAAATTAAGGTTATCATGTGATGCAC 58.810 33.333 5.78 2.90 36.05 4.57
1690 1706 6.682423 TTAAGGTTATCATGTGATGCACTG 57.318 37.500 5.78 0.00 36.05 3.66
1691 1707 2.947652 AGGTTATCATGTGATGCACTGC 59.052 45.455 5.78 0.00 36.05 4.40
1694 1710 4.497006 GGTTATCATGTGATGCACTGCTTC 60.497 45.833 9.48 9.48 36.05 3.86
1695 1711 2.188062 TCATGTGATGCACTGCTTCA 57.812 45.000 14.07 14.07 39.73 3.02
1696 1712 2.506444 TCATGTGATGCACTGCTTCAA 58.494 42.857 18.46 10.98 42.66 2.69
1697 1713 2.885894 TCATGTGATGCACTGCTTCAAA 59.114 40.909 18.46 14.86 42.66 2.69
1698 1714 3.508402 TCATGTGATGCACTGCTTCAAAT 59.492 39.130 18.46 16.25 42.66 2.32
1699 1715 4.701171 TCATGTGATGCACTGCTTCAAATA 59.299 37.500 18.46 10.34 42.66 1.40
1701 1717 5.648178 TGTGATGCACTGCTTCAAATATT 57.352 34.783 18.46 0.00 42.66 1.28
1703 1719 7.337480 TGTGATGCACTGCTTCAAATATTAT 57.663 32.000 18.46 0.00 42.66 1.28
1704 1720 7.774134 TGTGATGCACTGCTTCAAATATTATT 58.226 30.769 18.46 0.00 42.66 1.40
1705 1721 8.252417 TGTGATGCACTGCTTCAAATATTATTT 58.748 29.630 18.46 0.00 42.66 1.40
1706 1722 9.734620 GTGATGCACTGCTTCAAATATTATTTA 57.265 29.630 18.46 0.00 42.66 1.40
1709 1725 9.701098 ATGCACTGCTTCAAATATTATTTATGG 57.299 29.630 1.98 0.00 0.00 2.74
1710 1726 8.143193 TGCACTGCTTCAAATATTATTTATGGG 58.857 33.333 1.98 0.00 0.00 4.00
1711 1727 8.359642 GCACTGCTTCAAATATTATTTATGGGA 58.640 33.333 1.41 0.00 0.00 4.37
1872 1892 2.729028 ACAGGCTACCAAACACAGTT 57.271 45.000 0.00 0.00 0.00 3.16
1891 1911 2.780065 TTCAGTGCAACATGTCTTGC 57.220 45.000 14.36 14.36 45.80 4.01
1930 1950 0.975135 ACAGTCTCAGCTCAGCATGT 59.025 50.000 0.00 0.00 37.40 3.21
2049 2069 2.927028 ACAACTACCAAACACACCCTC 58.073 47.619 0.00 0.00 0.00 4.30
2062 2082 4.500265 CCCTCAGGGTTGGTGTTG 57.500 61.111 0.00 0.00 38.25 3.33
2063 2083 1.843421 CCCTCAGGGTTGGTGTTGA 59.157 57.895 0.00 0.00 38.25 3.18
2064 2084 0.184933 CCCTCAGGGTTGGTGTTGAA 59.815 55.000 0.00 0.00 38.25 2.69
2065 2085 1.609208 CCTCAGGGTTGGTGTTGAAG 58.391 55.000 0.00 0.00 0.00 3.02
2066 2086 1.609208 CTCAGGGTTGGTGTTGAAGG 58.391 55.000 0.00 0.00 0.00 3.46
2067 2087 0.467290 TCAGGGTTGGTGTTGAAGGC 60.467 55.000 0.00 0.00 0.00 4.35
2068 2088 1.528309 AGGGTTGGTGTTGAAGGCG 60.528 57.895 0.00 0.00 0.00 5.52
2069 2089 1.527380 GGGTTGGTGTTGAAGGCGA 60.527 57.895 0.00 0.00 0.00 5.54
2070 2090 1.652563 GGTTGGTGTTGAAGGCGAC 59.347 57.895 0.00 0.00 0.00 5.19
2071 2091 1.652563 GTTGGTGTTGAAGGCGACC 59.347 57.895 0.00 0.00 0.00 4.79
2072 2092 1.098712 GTTGGTGTTGAAGGCGACCA 61.099 55.000 0.00 0.00 36.68 4.02
2073 2093 0.179004 TTGGTGTTGAAGGCGACCAT 60.179 50.000 0.00 0.00 38.28 3.55
2074 2094 0.605319 TGGTGTTGAAGGCGACCATC 60.605 55.000 0.00 0.00 33.44 3.51
2075 2095 1.635663 GGTGTTGAAGGCGACCATCG 61.636 60.000 0.00 0.00 43.89 3.84
2088 2108 4.178156 CGACCATCGCACTTTTACATAC 57.822 45.455 0.00 0.00 31.14 2.39
2089 2109 3.301579 CGACCATCGCACTTTTACATACG 60.302 47.826 0.00 0.00 31.14 3.06
2090 2110 3.592059 ACCATCGCACTTTTACATACGT 58.408 40.909 0.00 0.00 0.00 3.57
2091 2111 3.615496 ACCATCGCACTTTTACATACGTC 59.385 43.478 0.00 0.00 0.00 4.34
2092 2112 3.863424 CCATCGCACTTTTACATACGTCT 59.137 43.478 0.00 0.00 0.00 4.18
2093 2113 4.026804 CCATCGCACTTTTACATACGTCTC 60.027 45.833 0.00 0.00 0.00 3.36
2094 2114 4.430137 TCGCACTTTTACATACGTCTCT 57.570 40.909 0.00 0.00 0.00 3.10
2095 2115 4.163552 TCGCACTTTTACATACGTCTCTG 58.836 43.478 0.00 0.00 0.00 3.35
2096 2116 4.083164 TCGCACTTTTACATACGTCTCTGA 60.083 41.667 0.00 0.00 0.00 3.27
2097 2117 4.619760 CGCACTTTTACATACGTCTCTGAA 59.380 41.667 0.00 0.00 0.00 3.02
2098 2118 5.220043 CGCACTTTTACATACGTCTCTGAAG 60.220 44.000 0.00 0.00 0.00 3.02
2099 2119 5.444745 GCACTTTTACATACGTCTCTGAAGC 60.445 44.000 0.00 0.00 0.00 3.86
2100 2120 5.633601 CACTTTTACATACGTCTCTGAAGCA 59.366 40.000 0.00 0.00 0.00 3.91
2101 2121 5.634020 ACTTTTACATACGTCTCTGAAGCAC 59.366 40.000 0.00 0.00 0.00 4.40
2102 2122 4.776795 TTACATACGTCTCTGAAGCACA 57.223 40.909 0.00 0.00 0.00 4.57
2103 2123 3.876274 ACATACGTCTCTGAAGCACAT 57.124 42.857 0.00 0.00 0.00 3.21
2104 2124 3.775202 ACATACGTCTCTGAAGCACATC 58.225 45.455 0.00 0.00 0.00 3.06
2105 2125 3.193479 ACATACGTCTCTGAAGCACATCA 59.807 43.478 0.00 0.00 0.00 3.07
2106 2126 2.071688 ACGTCTCTGAAGCACATCAC 57.928 50.000 0.00 0.00 0.00 3.06
2107 2127 1.341209 ACGTCTCTGAAGCACATCACA 59.659 47.619 0.00 0.00 0.00 3.58
2108 2128 2.224042 ACGTCTCTGAAGCACATCACAA 60.224 45.455 0.00 0.00 0.00 3.33
2109 2129 2.411069 CGTCTCTGAAGCACATCACAAG 59.589 50.000 0.00 0.00 0.00 3.16
2110 2130 2.159234 GTCTCTGAAGCACATCACAAGC 59.841 50.000 0.00 0.00 0.00 4.01
2111 2131 2.148768 CTCTGAAGCACATCACAAGCA 58.851 47.619 0.00 0.00 0.00 3.91
2112 2132 2.551032 CTCTGAAGCACATCACAAGCAA 59.449 45.455 0.00 0.00 0.00 3.91
2113 2133 2.551032 TCTGAAGCACATCACAAGCAAG 59.449 45.455 0.00 0.00 0.00 4.01
2114 2134 1.610038 TGAAGCACATCACAAGCAAGG 59.390 47.619 0.00 0.00 0.00 3.61
2115 2135 1.881973 GAAGCACATCACAAGCAAGGA 59.118 47.619 0.00 0.00 0.00 3.36
2116 2136 1.985473 AGCACATCACAAGCAAGGAA 58.015 45.000 0.00 0.00 0.00 3.36
2117 2137 1.884579 AGCACATCACAAGCAAGGAAG 59.115 47.619 0.00 0.00 0.00 3.46
2118 2138 1.610522 GCACATCACAAGCAAGGAAGT 59.389 47.619 0.00 0.00 0.00 3.01
2119 2139 2.035066 GCACATCACAAGCAAGGAAGTT 59.965 45.455 0.00 0.00 0.00 2.66
2120 2140 3.253188 GCACATCACAAGCAAGGAAGTTA 59.747 43.478 0.00 0.00 0.00 2.24
2121 2141 4.082571 GCACATCACAAGCAAGGAAGTTAT 60.083 41.667 0.00 0.00 0.00 1.89
2122 2142 5.396484 CACATCACAAGCAAGGAAGTTATG 58.604 41.667 0.00 0.00 0.00 1.90
2123 2143 4.460382 ACATCACAAGCAAGGAAGTTATGG 59.540 41.667 0.00 0.00 0.00 2.74
2124 2144 4.365514 TCACAAGCAAGGAAGTTATGGA 57.634 40.909 0.00 0.00 0.00 3.41
2125 2145 4.326826 TCACAAGCAAGGAAGTTATGGAG 58.673 43.478 0.00 0.00 0.00 3.86
2126 2146 4.041567 TCACAAGCAAGGAAGTTATGGAGA 59.958 41.667 0.00 0.00 0.00 3.71
2127 2147 4.761739 CACAAGCAAGGAAGTTATGGAGAA 59.238 41.667 0.00 0.00 0.00 2.87
2128 2148 4.762251 ACAAGCAAGGAAGTTATGGAGAAC 59.238 41.667 0.00 0.00 0.00 3.01
2129 2149 4.917906 AGCAAGGAAGTTATGGAGAACT 57.082 40.909 0.00 0.00 41.50 3.01
2138 2158 5.997384 AGTTATGGAGAACTTCTAACCGT 57.003 39.130 0.00 0.00 36.19 4.83
2139 2159 5.963594 AGTTATGGAGAACTTCTAACCGTC 58.036 41.667 0.00 0.00 36.19 4.79
2140 2160 5.715753 AGTTATGGAGAACTTCTAACCGTCT 59.284 40.000 0.00 0.00 36.19 4.18
2141 2161 6.888632 AGTTATGGAGAACTTCTAACCGTCTA 59.111 38.462 0.00 0.00 36.19 2.59
2142 2162 5.838531 ATGGAGAACTTCTAACCGTCTAG 57.161 43.478 0.00 0.00 0.00 2.43
2144 2164 4.263639 TGGAGAACTTCTAACCGTCTAGGA 60.264 45.833 0.00 0.00 45.00 2.94
2145 2165 4.336153 GGAGAACTTCTAACCGTCTAGGAG 59.664 50.000 0.00 0.00 45.00 3.69
2146 2166 3.695556 AGAACTTCTAACCGTCTAGGAGC 59.304 47.826 0.00 0.00 45.00 4.70
2147 2167 2.377073 ACTTCTAACCGTCTAGGAGCC 58.623 52.381 0.00 0.00 45.00 4.70
2148 2168 1.682323 CTTCTAACCGTCTAGGAGCCC 59.318 57.143 0.00 0.00 45.00 5.19
2149 2169 0.627451 TCTAACCGTCTAGGAGCCCA 59.373 55.000 0.00 0.00 45.00 5.36
2150 2170 1.006281 TCTAACCGTCTAGGAGCCCAA 59.994 52.381 0.00 0.00 45.00 4.12
2151 2171 1.409427 CTAACCGTCTAGGAGCCCAAG 59.591 57.143 0.00 0.00 45.00 3.61
2152 2172 1.900545 AACCGTCTAGGAGCCCAAGC 61.901 60.000 0.00 0.00 45.00 4.01
2164 2184 2.724977 GCCCAAGCTCCAAAAGTAAC 57.275 50.000 0.00 0.00 35.50 2.50
2165 2185 1.960689 GCCCAAGCTCCAAAAGTAACA 59.039 47.619 0.00 0.00 35.50 2.41
2166 2186 2.364002 GCCCAAGCTCCAAAAGTAACAA 59.636 45.455 0.00 0.00 35.50 2.83
2167 2187 3.552890 GCCCAAGCTCCAAAAGTAACAAG 60.553 47.826 0.00 0.00 35.50 3.16
2168 2188 3.636764 CCCAAGCTCCAAAAGTAACAAGT 59.363 43.478 0.00 0.00 0.00 3.16
2169 2189 4.099419 CCCAAGCTCCAAAAGTAACAAGTT 59.901 41.667 0.00 0.00 0.00 2.66
2170 2190 5.300792 CCCAAGCTCCAAAAGTAACAAGTTA 59.699 40.000 0.00 0.00 0.00 2.24
2171 2191 6.438763 CCAAGCTCCAAAAGTAACAAGTTAG 58.561 40.000 0.00 0.00 0.00 2.34
2172 2192 6.039382 CCAAGCTCCAAAAGTAACAAGTTAGT 59.961 38.462 0.00 0.00 0.00 2.24
2173 2193 6.619801 AGCTCCAAAAGTAACAAGTTAGTG 57.380 37.500 1.35 0.00 0.00 2.74
2174 2194 5.531287 AGCTCCAAAAGTAACAAGTTAGTGG 59.469 40.000 1.35 4.09 0.00 4.00
2175 2195 5.529800 GCTCCAAAAGTAACAAGTTAGTGGA 59.470 40.000 1.35 7.44 0.00 4.02
2176 2196 6.293462 GCTCCAAAAGTAACAAGTTAGTGGAG 60.293 42.308 22.42 22.42 38.23 3.86
2177 2197 6.891388 TCCAAAAGTAACAAGTTAGTGGAGA 58.109 36.000 1.35 0.00 0.00 3.71
2178 2198 7.514721 TCCAAAAGTAACAAGTTAGTGGAGAT 58.485 34.615 1.35 0.00 0.00 2.75
2179 2199 8.653191 TCCAAAAGTAACAAGTTAGTGGAGATA 58.347 33.333 1.35 0.00 0.00 1.98
2180 2200 9.280174 CCAAAAGTAACAAGTTAGTGGAGATAA 57.720 33.333 1.35 0.00 0.00 1.75
2188 2208 8.950208 ACAAGTTAGTGGAGATAAATAAGCTC 57.050 34.615 0.00 0.00 0.00 4.09
2189 2209 8.540388 ACAAGTTAGTGGAGATAAATAAGCTCA 58.460 33.333 0.00 0.00 0.00 4.26
2190 2210 9.039870 CAAGTTAGTGGAGATAAATAAGCTCAG 57.960 37.037 0.00 0.00 0.00 3.35
2191 2211 8.540507 AGTTAGTGGAGATAAATAAGCTCAGA 57.459 34.615 0.00 0.00 0.00 3.27
2192 2212 8.982723 AGTTAGTGGAGATAAATAAGCTCAGAA 58.017 33.333 0.00 0.00 0.00 3.02
2193 2213 9.601217 GTTAGTGGAGATAAATAAGCTCAGAAA 57.399 33.333 0.00 0.00 0.00 2.52
2195 2215 8.499403 AGTGGAGATAAATAAGCTCAGAAAAC 57.501 34.615 0.00 0.00 0.00 2.43
2196 2216 8.103305 AGTGGAGATAAATAAGCTCAGAAAACA 58.897 33.333 0.00 0.00 0.00 2.83
2197 2217 8.178313 GTGGAGATAAATAAGCTCAGAAAACAC 58.822 37.037 0.00 0.00 0.00 3.32
2198 2218 7.882791 TGGAGATAAATAAGCTCAGAAAACACA 59.117 33.333 0.00 0.00 0.00 3.72
2199 2219 8.730680 GGAGATAAATAAGCTCAGAAAACACAA 58.269 33.333 0.00 0.00 0.00 3.33
2204 2224 8.807667 AAATAAGCTCAGAAAACACAAATCAG 57.192 30.769 0.00 0.00 0.00 2.90
2205 2225 5.841957 AAGCTCAGAAAACACAAATCAGT 57.158 34.783 0.00 0.00 0.00 3.41
2206 2226 5.841957 AGCTCAGAAAACACAAATCAGTT 57.158 34.783 0.00 0.00 0.00 3.16
2207 2227 6.212888 AGCTCAGAAAACACAAATCAGTTT 57.787 33.333 0.00 0.00 39.46 2.66
2221 2241 7.921786 CAAATCAGTTTGGTAGGAATGTAGA 57.078 36.000 0.00 0.00 40.78 2.59
2222 2242 8.511604 CAAATCAGTTTGGTAGGAATGTAGAT 57.488 34.615 0.00 0.00 40.78 1.98
2223 2243 9.613428 CAAATCAGTTTGGTAGGAATGTAGATA 57.387 33.333 0.00 0.00 40.78 1.98
2224 2244 9.838339 AAATCAGTTTGGTAGGAATGTAGATAG 57.162 33.333 0.00 0.00 0.00 2.08
2225 2245 7.361457 TCAGTTTGGTAGGAATGTAGATAGG 57.639 40.000 0.00 0.00 0.00 2.57
2226 2246 6.326583 TCAGTTTGGTAGGAATGTAGATAGGG 59.673 42.308 0.00 0.00 0.00 3.53
2227 2247 6.099845 CAGTTTGGTAGGAATGTAGATAGGGT 59.900 42.308 0.00 0.00 0.00 4.34
2228 2248 6.099845 AGTTTGGTAGGAATGTAGATAGGGTG 59.900 42.308 0.00 0.00 0.00 4.61
2229 2249 5.412617 TGGTAGGAATGTAGATAGGGTGA 57.587 43.478 0.00 0.00 0.00 4.02
2230 2250 5.784023 TGGTAGGAATGTAGATAGGGTGAA 58.216 41.667 0.00 0.00 0.00 3.18
2231 2251 6.390504 TGGTAGGAATGTAGATAGGGTGAAT 58.609 40.000 0.00 0.00 0.00 2.57
2232 2252 7.541074 TGGTAGGAATGTAGATAGGGTGAATA 58.459 38.462 0.00 0.00 0.00 1.75
2233 2253 8.184249 TGGTAGGAATGTAGATAGGGTGAATAT 58.816 37.037 0.00 0.00 0.00 1.28
2234 2254 8.697292 GGTAGGAATGTAGATAGGGTGAATATC 58.303 40.741 0.00 0.00 0.00 1.63
2235 2255 7.741554 AGGAATGTAGATAGGGTGAATATCC 57.258 40.000 0.00 0.00 31.22 2.59
2236 2256 7.491681 AGGAATGTAGATAGGGTGAATATCCT 58.508 38.462 0.00 0.00 41.47 3.24
2237 2257 7.621683 AGGAATGTAGATAGGGTGAATATCCTC 59.378 40.741 0.00 0.00 38.70 3.71
2238 2258 7.147637 GGAATGTAGATAGGGTGAATATCCTCC 60.148 44.444 0.00 0.00 38.70 4.30
2239 2259 6.227624 TGTAGATAGGGTGAATATCCTCCA 57.772 41.667 0.00 0.00 38.70 3.86
2240 2260 6.630131 TGTAGATAGGGTGAATATCCTCCAA 58.370 40.000 0.00 0.00 38.70 3.53
2241 2261 7.256399 TGTAGATAGGGTGAATATCCTCCAAT 58.744 38.462 0.00 0.00 38.70 3.16
2242 2262 6.882768 AGATAGGGTGAATATCCTCCAATC 57.117 41.667 0.00 0.00 38.70 2.67
2243 2263 5.728741 AGATAGGGTGAATATCCTCCAATCC 59.271 44.000 0.00 0.00 38.70 3.01
2244 2264 2.989571 AGGGTGAATATCCTCCAATCCC 59.010 50.000 0.00 0.00 28.49 3.85
2245 2265 2.716424 GGGTGAATATCCTCCAATCCCA 59.284 50.000 0.00 0.00 33.33 4.37
2246 2266 3.334881 GGGTGAATATCCTCCAATCCCAT 59.665 47.826 0.00 0.00 33.33 4.00
2247 2267 4.202716 GGGTGAATATCCTCCAATCCCATT 60.203 45.833 0.00 0.00 33.33 3.16
2248 2268 5.015178 GGGTGAATATCCTCCAATCCCATTA 59.985 44.000 0.00 0.00 33.33 1.90
2249 2269 6.468651 GGGTGAATATCCTCCAATCCCATTAA 60.469 42.308 0.00 0.00 33.33 1.40
2250 2270 7.010160 GGTGAATATCCTCCAATCCCATTAAA 58.990 38.462 0.00 0.00 0.00 1.52
2251 2271 7.675619 GGTGAATATCCTCCAATCCCATTAAAT 59.324 37.037 0.00 0.00 0.00 1.40
2252 2272 8.743714 GTGAATATCCTCCAATCCCATTAAATC 58.256 37.037 0.00 0.00 0.00 2.17
2253 2273 8.455309 TGAATATCCTCCAATCCCATTAAATCA 58.545 33.333 0.00 0.00 0.00 2.57
2254 2274 8.890410 AATATCCTCCAATCCCATTAAATCAG 57.110 34.615 0.00 0.00 0.00 2.90
2255 2275 5.992564 TCCTCCAATCCCATTAAATCAGA 57.007 39.130 0.00 0.00 0.00 3.27
2256 2276 5.945310 TCCTCCAATCCCATTAAATCAGAG 58.055 41.667 0.00 0.00 0.00 3.35
2257 2277 5.433051 TCCTCCAATCCCATTAAATCAGAGT 59.567 40.000 0.00 0.00 0.00 3.24
2258 2278 5.533903 CCTCCAATCCCATTAAATCAGAGTG 59.466 44.000 0.00 0.00 0.00 3.51
2259 2279 6.078456 TCCAATCCCATTAAATCAGAGTGT 57.922 37.500 0.00 0.00 0.00 3.55
2260 2280 6.493166 TCCAATCCCATTAAATCAGAGTGTT 58.507 36.000 0.00 0.00 0.00 3.32
2261 2281 6.953520 TCCAATCCCATTAAATCAGAGTGTTT 59.046 34.615 0.00 0.00 0.00 2.83
2262 2282 7.454380 TCCAATCCCATTAAATCAGAGTGTTTT 59.546 33.333 0.00 0.00 0.00 2.43
2263 2283 8.096414 CCAATCCCATTAAATCAGAGTGTTTTT 58.904 33.333 0.00 0.00 0.00 1.94
2279 2299 1.904287 TTTTTGGTGGATGAGGACGG 58.096 50.000 0.00 0.00 0.00 4.79
2280 2300 1.060729 TTTTGGTGGATGAGGACGGA 58.939 50.000 0.00 0.00 0.00 4.69
2281 2301 1.060729 TTTGGTGGATGAGGACGGAA 58.939 50.000 0.00 0.00 0.00 4.30
2282 2302 1.060729 TTGGTGGATGAGGACGGAAA 58.939 50.000 0.00 0.00 0.00 3.13
2283 2303 1.285280 TGGTGGATGAGGACGGAAAT 58.715 50.000 0.00 0.00 0.00 2.17
2284 2304 1.209504 TGGTGGATGAGGACGGAAATC 59.790 52.381 0.00 0.00 0.00 2.17
2285 2305 1.486726 GGTGGATGAGGACGGAAATCT 59.513 52.381 0.00 0.00 0.00 2.40
2286 2306 2.483889 GGTGGATGAGGACGGAAATCTC 60.484 54.545 0.00 0.00 0.00 2.75
2287 2307 2.168521 GTGGATGAGGACGGAAATCTCA 59.831 50.000 0.00 0.00 41.09 3.27
2288 2308 2.837591 TGGATGAGGACGGAAATCTCAA 59.162 45.455 0.00 0.00 40.37 3.02
2289 2309 3.118629 TGGATGAGGACGGAAATCTCAAG 60.119 47.826 0.00 0.00 40.37 3.02
2290 2310 2.386661 TGAGGACGGAAATCTCAAGC 57.613 50.000 0.00 0.00 34.97 4.01
2291 2311 1.902508 TGAGGACGGAAATCTCAAGCT 59.097 47.619 0.00 0.00 34.97 3.74
2292 2312 2.303022 TGAGGACGGAAATCTCAAGCTT 59.697 45.455 0.00 0.00 34.97 3.74
2293 2313 3.244561 TGAGGACGGAAATCTCAAGCTTT 60.245 43.478 0.00 0.00 34.97 3.51
2294 2314 3.339141 AGGACGGAAATCTCAAGCTTTC 58.661 45.455 0.00 0.00 31.46 2.62
2295 2315 3.074412 GGACGGAAATCTCAAGCTTTCA 58.926 45.455 0.00 0.00 33.27 2.69
2296 2316 3.502211 GGACGGAAATCTCAAGCTTTCAA 59.498 43.478 0.00 0.00 33.27 2.69
2297 2317 4.378874 GGACGGAAATCTCAAGCTTTCAAG 60.379 45.833 0.00 0.00 33.27 3.02
2298 2318 3.503748 ACGGAAATCTCAAGCTTTCAAGG 59.496 43.478 0.00 0.00 33.27 3.61
2299 2319 3.503748 CGGAAATCTCAAGCTTTCAAGGT 59.496 43.478 0.00 0.00 38.62 3.50
2300 2320 4.022849 CGGAAATCTCAAGCTTTCAAGGTT 60.023 41.667 0.00 0.00 46.71 3.50
2301 2321 5.507985 CGGAAATCTCAAGCTTTCAAGGTTT 60.508 40.000 9.98 9.98 43.61 3.27
2302 2322 5.693555 GGAAATCTCAAGCTTTCAAGGTTTG 59.306 40.000 13.50 0.00 43.61 2.93
2303 2323 6.461509 GGAAATCTCAAGCTTTCAAGGTTTGA 60.462 38.462 13.50 0.00 43.61 2.69
2313 2333 3.336509 TCAAGGTTTGAAAATGGGGGA 57.663 42.857 0.00 0.00 36.59 4.81
2314 2334 3.868062 TCAAGGTTTGAAAATGGGGGAT 58.132 40.909 0.00 0.00 36.59 3.85
2315 2335 3.582208 TCAAGGTTTGAAAATGGGGGATG 59.418 43.478 0.00 0.00 36.59 3.51
2316 2336 3.558608 AGGTTTGAAAATGGGGGATGA 57.441 42.857 0.00 0.00 0.00 2.92
2317 2337 3.868062 AGGTTTGAAAATGGGGGATGAA 58.132 40.909 0.00 0.00 0.00 2.57
2318 2338 4.238669 AGGTTTGAAAATGGGGGATGAAA 58.761 39.130 0.00 0.00 0.00 2.69
2319 2339 4.286808 AGGTTTGAAAATGGGGGATGAAAG 59.713 41.667 0.00 0.00 0.00 2.62
2320 2340 3.979101 TTGAAAATGGGGGATGAAAGC 57.021 42.857 0.00 0.00 0.00 3.51
2321 2341 3.188880 TGAAAATGGGGGATGAAAGCT 57.811 42.857 0.00 0.00 0.00 3.74
2322 2342 3.519667 TGAAAATGGGGGATGAAAGCTT 58.480 40.909 0.00 0.00 0.00 3.74
2323 2343 3.261390 TGAAAATGGGGGATGAAAGCTTG 59.739 43.478 0.00 0.00 0.00 4.01
2324 2344 1.197812 AATGGGGGATGAAAGCTTGC 58.802 50.000 0.00 0.00 0.00 4.01
2325 2345 0.041535 ATGGGGGATGAAAGCTTGCA 59.958 50.000 10.26 10.26 0.00 4.08
2326 2346 0.899717 TGGGGGATGAAAGCTTGCAC 60.900 55.000 10.01 3.86 0.00 4.57
2327 2347 0.899717 GGGGGATGAAAGCTTGCACA 60.900 55.000 10.01 6.49 0.00 4.57
2328 2348 0.968405 GGGGATGAAAGCTTGCACAA 59.032 50.000 10.01 0.00 0.00 3.33
2329 2349 1.067354 GGGGATGAAAGCTTGCACAAG 60.067 52.381 10.01 6.01 41.24 3.16
2330 2350 1.888512 GGGATGAAAGCTTGCACAAGA 59.111 47.619 10.01 0.00 40.79 3.02
2331 2351 2.494870 GGGATGAAAGCTTGCACAAGAT 59.505 45.455 10.01 4.82 40.79 2.40
2333 2353 3.924686 GGATGAAAGCTTGCACAAGATTG 59.075 43.478 10.01 0.00 45.13 2.67
2334 2354 4.321452 GGATGAAAGCTTGCACAAGATTGA 60.321 41.667 10.01 5.44 45.13 2.57
2335 2355 4.233123 TGAAAGCTTGCACAAGATTGAG 57.767 40.909 14.03 0.00 45.13 3.02
2336 2356 3.005050 TGAAAGCTTGCACAAGATTGAGG 59.995 43.478 14.03 0.00 45.13 3.86
2337 2357 2.283145 AGCTTGCACAAGATTGAGGT 57.717 45.000 14.44 0.00 40.79 3.85
2338 2358 2.590821 AGCTTGCACAAGATTGAGGTT 58.409 42.857 14.44 0.00 40.79 3.50
2339 2359 2.295349 AGCTTGCACAAGATTGAGGTTG 59.705 45.455 14.44 0.00 40.79 3.77
2340 2360 2.294233 GCTTGCACAAGATTGAGGTTGA 59.706 45.455 14.44 0.00 40.79 3.18
2341 2361 3.243501 GCTTGCACAAGATTGAGGTTGAA 60.244 43.478 14.44 0.00 40.79 2.69
2342 2362 4.543692 CTTGCACAAGATTGAGGTTGAAG 58.456 43.478 4.31 0.00 40.79 3.02
2343 2363 2.886523 TGCACAAGATTGAGGTTGAAGG 59.113 45.455 0.00 0.00 0.00 3.46
2344 2364 2.887152 GCACAAGATTGAGGTTGAAGGT 59.113 45.455 0.00 0.00 0.00 3.50
2345 2365 3.304928 GCACAAGATTGAGGTTGAAGGTG 60.305 47.826 0.00 0.00 0.00 4.00
2346 2366 3.254166 CACAAGATTGAGGTTGAAGGTGG 59.746 47.826 0.00 0.00 0.00 4.61
2347 2367 3.138283 ACAAGATTGAGGTTGAAGGTGGA 59.862 43.478 0.00 0.00 0.00 4.02
2348 2368 4.144297 CAAGATTGAGGTTGAAGGTGGAA 58.856 43.478 0.00 0.00 0.00 3.53
2349 2369 4.026356 AGATTGAGGTTGAAGGTGGAAG 57.974 45.455 0.00 0.00 0.00 3.46
2350 2370 2.656947 TTGAGGTTGAAGGTGGAAGG 57.343 50.000 0.00 0.00 0.00 3.46
2351 2371 1.814429 TGAGGTTGAAGGTGGAAGGA 58.186 50.000 0.00 0.00 0.00 3.36
2352 2372 1.699634 TGAGGTTGAAGGTGGAAGGAG 59.300 52.381 0.00 0.00 0.00 3.69
2353 2373 1.978580 GAGGTTGAAGGTGGAAGGAGA 59.021 52.381 0.00 0.00 0.00 3.71
2354 2374 1.981495 AGGTTGAAGGTGGAAGGAGAG 59.019 52.381 0.00 0.00 0.00 3.20
2355 2375 1.003696 GGTTGAAGGTGGAAGGAGAGG 59.996 57.143 0.00 0.00 0.00 3.69
2356 2376 1.003696 GTTGAAGGTGGAAGGAGAGGG 59.996 57.143 0.00 0.00 0.00 4.30
2357 2377 0.547712 TGAAGGTGGAAGGAGAGGGG 60.548 60.000 0.00 0.00 0.00 4.79
2358 2378 1.229984 AAGGTGGAAGGAGAGGGGG 60.230 63.158 0.00 0.00 0.00 5.40
2359 2379 2.062448 AAGGTGGAAGGAGAGGGGGT 62.062 60.000 0.00 0.00 0.00 4.95
2360 2380 1.160289 AGGTGGAAGGAGAGGGGGTA 61.160 60.000 0.00 0.00 0.00 3.69
2361 2381 0.029989 GGTGGAAGGAGAGGGGGTAT 60.030 60.000 0.00 0.00 0.00 2.73
2362 2382 1.628327 GGTGGAAGGAGAGGGGGTATT 60.628 57.143 0.00 0.00 0.00 1.89
2363 2383 2.206223 GTGGAAGGAGAGGGGGTATTT 58.794 52.381 0.00 0.00 0.00 1.40
2364 2384 3.390819 GTGGAAGGAGAGGGGGTATTTA 58.609 50.000 0.00 0.00 0.00 1.40
2365 2385 3.981375 GTGGAAGGAGAGGGGGTATTTAT 59.019 47.826 0.00 0.00 0.00 1.40
2366 2386 5.160386 GTGGAAGGAGAGGGGGTATTTATA 58.840 45.833 0.00 0.00 0.00 0.98
2367 2387 5.609708 GTGGAAGGAGAGGGGGTATTTATAA 59.390 44.000 0.00 0.00 0.00 0.98
2368 2388 5.609708 TGGAAGGAGAGGGGGTATTTATAAC 59.390 44.000 0.00 0.00 0.00 1.89
2369 2389 5.013913 GGAAGGAGAGGGGGTATTTATAACC 59.986 48.000 0.00 0.00 39.47 2.85
2381 2401 6.008331 GGTATTTATAACCCCAAGGCTAAGG 58.992 44.000 0.00 0.00 36.11 2.69
2382 2402 5.744274 ATTTATAACCCCAAGGCTAAGGT 57.256 39.130 5.34 1.61 36.11 3.50
2383 2403 6.851965 ATTTATAACCCCAAGGCTAAGGTA 57.148 37.500 3.71 0.00 36.11 3.08
2384 2404 5.899631 TTATAACCCCAAGGCTAAGGTAG 57.100 43.478 3.71 0.00 36.11 3.18
2385 2405 2.055246 AACCCCAAGGCTAAGGTAGT 57.945 50.000 3.71 0.00 36.11 2.73
2386 2406 1.581223 ACCCCAAGGCTAAGGTAGTC 58.419 55.000 1.46 0.00 36.11 2.59
2387 2407 0.464452 CCCCAAGGCTAAGGTAGTCG 59.536 60.000 5.34 0.00 35.04 4.18
2388 2408 1.192428 CCCAAGGCTAAGGTAGTCGT 58.808 55.000 5.34 0.00 35.04 4.34
2389 2409 1.553704 CCCAAGGCTAAGGTAGTCGTT 59.446 52.381 5.34 0.00 35.04 3.85
2390 2410 2.618053 CCAAGGCTAAGGTAGTCGTTG 58.382 52.381 0.00 0.00 35.04 4.10
2391 2411 2.000447 CAAGGCTAAGGTAGTCGTTGC 59.000 52.381 0.00 0.00 35.04 4.17
2392 2412 0.535797 AGGCTAAGGTAGTCGTTGCC 59.464 55.000 0.00 0.00 36.67 4.52
2393 2413 0.461516 GGCTAAGGTAGTCGTTGCCC 60.462 60.000 0.00 0.00 33.73 5.36
2394 2414 0.248289 GCTAAGGTAGTCGTTGCCCA 59.752 55.000 0.00 0.00 30.62 5.36
2395 2415 1.739371 GCTAAGGTAGTCGTTGCCCAG 60.739 57.143 0.00 0.00 30.62 4.45
2396 2416 0.248289 TAAGGTAGTCGTTGCCCAGC 59.752 55.000 0.00 0.00 30.62 4.85
2397 2417 2.436115 GGTAGTCGTTGCCCAGCC 60.436 66.667 0.00 0.00 0.00 4.85
2398 2418 2.345991 GTAGTCGTTGCCCAGCCA 59.654 61.111 0.00 0.00 0.00 4.75
2399 2419 1.741770 GTAGTCGTTGCCCAGCCAG 60.742 63.158 0.00 0.00 0.00 4.85
2400 2420 3.605749 TAGTCGTTGCCCAGCCAGC 62.606 63.158 0.00 0.00 0.00 4.85
2405 2425 4.223125 TTGCCCAGCCAGCAACCT 62.223 61.111 1.81 0.00 44.95 3.50
2406 2426 4.666253 TGCCCAGCCAGCAACCTC 62.666 66.667 0.00 0.00 37.28 3.85
2407 2427 4.666253 GCCCAGCCAGCAACCTCA 62.666 66.667 0.00 0.00 0.00 3.86
2408 2428 2.360852 CCCAGCCAGCAACCTCAG 60.361 66.667 0.00 0.00 0.00 3.35
2409 2429 2.360852 CCAGCCAGCAACCTCAGG 60.361 66.667 0.00 0.00 0.00 3.86
2412 2432 3.368571 GCCAGCAACCTCAGGCAC 61.369 66.667 0.00 0.00 46.26 5.01
2413 2433 2.674380 CCAGCAACCTCAGGCACC 60.674 66.667 0.00 0.00 0.00 5.01
2414 2434 2.674380 CAGCAACCTCAGGCACCC 60.674 66.667 0.00 0.00 0.00 4.61
2415 2435 4.335647 AGCAACCTCAGGCACCCG 62.336 66.667 0.00 0.00 0.00 5.28
2417 2437 3.636231 CAACCTCAGGCACCCGGA 61.636 66.667 0.73 0.00 0.00 5.14
2418 2438 3.637273 AACCTCAGGCACCCGGAC 61.637 66.667 0.73 0.00 0.00 4.79
2421 2441 3.636231 CTCAGGCACCCGGACCAA 61.636 66.667 0.73 0.00 0.00 3.67
2422 2442 3.172106 TCAGGCACCCGGACCAAA 61.172 61.111 0.73 0.00 0.00 3.28
2423 2443 2.203422 CAGGCACCCGGACCAAAA 60.203 61.111 0.73 0.00 0.00 2.44
2424 2444 2.203437 AGGCACCCGGACCAAAAC 60.203 61.111 0.73 0.00 0.00 2.43
2425 2445 3.666253 GGCACCCGGACCAAAACG 61.666 66.667 0.73 0.00 0.00 3.60
2435 2455 2.333581 CCAAAACGGTTCGGCCAC 59.666 61.111 2.24 0.00 36.97 5.01
2436 2456 2.190841 CCAAAACGGTTCGGCCACT 61.191 57.895 2.24 0.00 36.97 4.00
2437 2457 1.281656 CAAAACGGTTCGGCCACTC 59.718 57.895 2.24 0.00 36.97 3.51
2438 2458 2.248835 AAAACGGTTCGGCCACTCG 61.249 57.895 2.24 3.15 36.97 4.18
2439 2459 4.675029 AACGGTTCGGCCACTCGG 62.675 66.667 2.24 0.00 36.97 4.63
2443 2463 3.998672 GTTCGGCCACTCGGACCA 61.999 66.667 2.24 0.00 36.69 4.02
2444 2464 3.691342 TTCGGCCACTCGGACCAG 61.691 66.667 2.24 0.00 36.69 4.00
2445 2465 4.988716 TCGGCCACTCGGACCAGT 62.989 66.667 2.24 0.00 36.69 4.00
2446 2466 4.436998 CGGCCACTCGGACCAGTC 62.437 72.222 2.24 0.00 36.69 3.51
2447 2467 3.311110 GGCCACTCGGACCAGTCA 61.311 66.667 0.00 0.00 31.82 3.41
2448 2468 2.048127 GCCACTCGGACCAGTCAC 60.048 66.667 0.00 0.00 0.00 3.67
2449 2469 2.574955 GCCACTCGGACCAGTCACT 61.575 63.158 0.00 0.00 0.00 3.41
2450 2470 1.248785 GCCACTCGGACCAGTCACTA 61.249 60.000 0.00 0.00 0.00 2.74
2451 2471 0.811915 CCACTCGGACCAGTCACTAG 59.188 60.000 0.00 0.00 0.00 2.57
2452 2472 0.171455 CACTCGGACCAGTCACTAGC 59.829 60.000 0.00 0.00 0.00 3.42
2453 2473 0.251209 ACTCGGACCAGTCACTAGCA 60.251 55.000 0.00 0.00 0.00 3.49
2454 2474 0.888619 CTCGGACCAGTCACTAGCAA 59.111 55.000 0.00 0.00 0.00 3.91
2455 2475 1.478510 CTCGGACCAGTCACTAGCAAT 59.521 52.381 0.00 0.00 0.00 3.56
2456 2476 1.476891 TCGGACCAGTCACTAGCAATC 59.523 52.381 0.00 0.00 0.00 2.67
2457 2477 1.204704 CGGACCAGTCACTAGCAATCA 59.795 52.381 0.00 0.00 0.00 2.57
2458 2478 2.622436 GGACCAGTCACTAGCAATCAC 58.378 52.381 0.00 0.00 0.00 3.06
2459 2479 2.263077 GACCAGTCACTAGCAATCACG 58.737 52.381 0.00 0.00 0.00 4.35
2460 2480 1.066858 ACCAGTCACTAGCAATCACGG 60.067 52.381 0.00 0.00 0.00 4.94
2461 2481 1.204704 CCAGTCACTAGCAATCACGGA 59.795 52.381 0.00 0.00 0.00 4.69
2462 2482 2.534298 CAGTCACTAGCAATCACGGAG 58.466 52.381 0.00 0.00 0.00 4.63
2463 2483 1.478510 AGTCACTAGCAATCACGGAGG 59.521 52.381 0.00 0.00 0.00 4.30
2464 2484 0.175760 TCACTAGCAATCACGGAGGC 59.824 55.000 0.00 0.00 0.00 4.70
2465 2485 0.811616 CACTAGCAATCACGGAGGCC 60.812 60.000 0.00 0.00 0.00 5.19
2466 2486 1.227674 CTAGCAATCACGGAGGCCC 60.228 63.158 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.069204 CGTCATGTCCCCGATCTCATT 59.931 52.381 0.00 0.00 0.00 2.57
146 147 3.793559 ACCTTTCCGAAGTCCGAATATG 58.206 45.455 0.00 0.00 41.76 1.78
737 747 4.201714 CGGTTGATGTAGTCGTACGTCTTA 60.202 45.833 19.61 10.31 43.23 2.10
931 944 3.181483 GGATGATCCTGCAACACCATTTC 60.181 47.826 3.71 0.00 32.53 2.17
1027 1040 2.026641 CATTGCATACTTCCCAGTGGG 58.973 52.381 23.57 23.57 46.11 4.61
1127 1140 6.100279 AGGAAGATGTTGCAATACCTCATCTA 59.900 38.462 22.56 0.00 42.54 1.98
1282 1295 0.040157 GCACTTGCAATCTCACGCAA 60.040 50.000 0.00 0.00 45.45 4.85
1303 1316 1.067516 AGCATGGCAAGTGTTGTTGAC 59.932 47.619 0.00 0.00 35.83 3.18
1459 1472 5.471456 AGATTCACTTGAACGATGCTTTTCT 59.529 36.000 0.00 0.00 36.80 2.52
1477 1490 2.754552 CGGGATTGGCTTTCAAGATTCA 59.245 45.455 0.00 0.00 38.95 2.57
1683 1699 9.701098 CCATAAATAATATTTGAAGCAGTGCAT 57.299 29.630 19.20 4.82 0.00 3.96
1685 1701 8.359642 TCCCATAAATAATATTTGAAGCAGTGC 58.640 33.333 7.13 7.13 0.00 4.40
1688 1704 9.696917 GGTTCCCATAAATAATATTTGAAGCAG 57.303 33.333 8.39 0.00 0.00 4.24
1690 1706 8.870116 AGGGTTCCCATAAATAATATTTGAAGC 58.130 33.333 10.73 11.20 0.00 3.86
1891 1911 1.098050 GTTTGGTAGGCTGCATCAGG 58.902 55.000 4.64 0.00 31.21 3.86
1930 1950 8.261522 TGTTTGGTAGCAATGTATGTACTGATA 58.738 33.333 8.40 0.00 0.00 2.15
2049 2069 1.795170 CGCCTTCAACACCAACCCTG 61.795 60.000 0.00 0.00 0.00 4.45
2054 2074 0.179004 ATGGTCGCCTTCAACACCAA 60.179 50.000 0.00 0.00 42.22 3.67
2055 2075 0.605319 GATGGTCGCCTTCAACACCA 60.605 55.000 0.00 0.00 43.10 4.17
2056 2076 1.635663 CGATGGTCGCCTTCAACACC 61.636 60.000 10.71 0.00 31.14 4.16
2057 2077 1.787847 CGATGGTCGCCTTCAACAC 59.212 57.895 10.71 0.00 31.14 3.32
2058 2078 4.277239 CGATGGTCGCCTTCAACA 57.723 55.556 10.71 0.00 31.14 3.33
2067 2087 3.301579 CGTATGTAAAAGTGCGATGGTCG 60.302 47.826 0.00 0.00 43.89 4.79
2068 2088 3.615496 ACGTATGTAAAAGTGCGATGGTC 59.385 43.478 0.00 0.00 0.00 4.02
2069 2089 3.592059 ACGTATGTAAAAGTGCGATGGT 58.408 40.909 0.00 0.00 0.00 3.55
2070 2090 3.863424 AGACGTATGTAAAAGTGCGATGG 59.137 43.478 0.00 0.00 0.00 3.51
2071 2091 4.798907 AGAGACGTATGTAAAAGTGCGATG 59.201 41.667 0.00 0.00 0.00 3.84
2072 2092 4.798907 CAGAGACGTATGTAAAAGTGCGAT 59.201 41.667 0.00 0.00 0.00 4.58
2073 2093 4.083164 TCAGAGACGTATGTAAAAGTGCGA 60.083 41.667 0.00 0.00 0.00 5.10
2074 2094 4.163552 TCAGAGACGTATGTAAAAGTGCG 58.836 43.478 0.00 0.00 0.00 5.34
2075 2095 5.444745 GCTTCAGAGACGTATGTAAAAGTGC 60.445 44.000 0.00 0.00 0.00 4.40
2076 2096 5.633601 TGCTTCAGAGACGTATGTAAAAGTG 59.366 40.000 0.00 0.00 0.00 3.16
2077 2097 5.634020 GTGCTTCAGAGACGTATGTAAAAGT 59.366 40.000 0.00 0.00 0.00 2.66
2078 2098 5.633601 TGTGCTTCAGAGACGTATGTAAAAG 59.366 40.000 0.00 0.00 0.00 2.27
2079 2099 5.534407 TGTGCTTCAGAGACGTATGTAAAA 58.466 37.500 0.00 0.00 0.00 1.52
2080 2100 5.128992 TGTGCTTCAGAGACGTATGTAAA 57.871 39.130 0.00 0.00 0.00 2.01
2081 2101 4.776795 TGTGCTTCAGAGACGTATGTAA 57.223 40.909 0.00 0.00 0.00 2.41
2082 2102 4.398044 TGATGTGCTTCAGAGACGTATGTA 59.602 41.667 0.00 0.00 0.00 2.29
2083 2103 3.193479 TGATGTGCTTCAGAGACGTATGT 59.807 43.478 0.00 0.00 0.00 2.29
2084 2104 3.549471 GTGATGTGCTTCAGAGACGTATG 59.451 47.826 0.00 0.00 0.00 2.39
2085 2105 3.193479 TGTGATGTGCTTCAGAGACGTAT 59.807 43.478 0.00 0.00 0.00 3.06
2086 2106 2.556622 TGTGATGTGCTTCAGAGACGTA 59.443 45.455 0.00 0.00 0.00 3.57
2087 2107 1.341209 TGTGATGTGCTTCAGAGACGT 59.659 47.619 0.00 0.00 0.00 4.34
2088 2108 2.070262 TGTGATGTGCTTCAGAGACG 57.930 50.000 0.00 0.00 0.00 4.18
2089 2109 2.159234 GCTTGTGATGTGCTTCAGAGAC 59.841 50.000 0.00 0.00 0.00 3.36
2090 2110 2.224354 TGCTTGTGATGTGCTTCAGAGA 60.224 45.455 0.00 0.00 0.00 3.10
2091 2111 2.148768 TGCTTGTGATGTGCTTCAGAG 58.851 47.619 0.00 0.00 0.00 3.35
2092 2112 2.259266 TGCTTGTGATGTGCTTCAGA 57.741 45.000 0.00 0.00 0.00 3.27
2093 2113 2.351447 CCTTGCTTGTGATGTGCTTCAG 60.351 50.000 0.00 0.00 0.00 3.02
2094 2114 1.610038 CCTTGCTTGTGATGTGCTTCA 59.390 47.619 0.00 0.00 0.00 3.02
2095 2115 1.881973 TCCTTGCTTGTGATGTGCTTC 59.118 47.619 0.00 0.00 0.00 3.86
2096 2116 1.985473 TCCTTGCTTGTGATGTGCTT 58.015 45.000 0.00 0.00 0.00 3.91
2097 2117 1.884579 CTTCCTTGCTTGTGATGTGCT 59.115 47.619 0.00 0.00 0.00 4.40
2098 2118 1.610522 ACTTCCTTGCTTGTGATGTGC 59.389 47.619 0.00 0.00 0.00 4.57
2099 2119 3.996150 AACTTCCTTGCTTGTGATGTG 57.004 42.857 0.00 0.00 0.00 3.21
2100 2120 4.460382 CCATAACTTCCTTGCTTGTGATGT 59.540 41.667 0.00 0.00 0.00 3.06
2101 2121 4.701651 TCCATAACTTCCTTGCTTGTGATG 59.298 41.667 0.00 0.00 0.00 3.07
2102 2122 4.922206 TCCATAACTTCCTTGCTTGTGAT 58.078 39.130 0.00 0.00 0.00 3.06
2103 2123 4.041567 TCTCCATAACTTCCTTGCTTGTGA 59.958 41.667 0.00 0.00 0.00 3.58
2104 2124 4.326826 TCTCCATAACTTCCTTGCTTGTG 58.673 43.478 0.00 0.00 0.00 3.33
2105 2125 4.640771 TCTCCATAACTTCCTTGCTTGT 57.359 40.909 0.00 0.00 0.00 3.16
2106 2126 5.006386 AGTTCTCCATAACTTCCTTGCTTG 58.994 41.667 0.00 0.00 36.26 4.01
2107 2127 5.248380 AGTTCTCCATAACTTCCTTGCTT 57.752 39.130 0.00 0.00 36.26 3.91
2108 2128 4.917906 AGTTCTCCATAACTTCCTTGCT 57.082 40.909 0.00 0.00 36.26 3.91
2116 2136 5.715753 AGACGGTTAGAAGTTCTCCATAACT 59.284 40.000 9.12 1.59 41.46 2.24
2117 2137 5.963594 AGACGGTTAGAAGTTCTCCATAAC 58.036 41.667 9.12 8.11 0.00 1.89
2118 2138 6.320672 CCTAGACGGTTAGAAGTTCTCCATAA 59.679 42.308 9.12 0.00 0.00 1.90
2119 2139 5.826737 CCTAGACGGTTAGAAGTTCTCCATA 59.173 44.000 9.12 0.00 0.00 2.74
2120 2140 4.645588 CCTAGACGGTTAGAAGTTCTCCAT 59.354 45.833 9.12 0.00 0.00 3.41
2121 2141 4.015084 CCTAGACGGTTAGAAGTTCTCCA 58.985 47.826 9.12 0.00 0.00 3.86
2122 2142 4.268359 TCCTAGACGGTTAGAAGTTCTCC 58.732 47.826 9.12 4.55 0.00 3.71
2123 2143 4.201940 GCTCCTAGACGGTTAGAAGTTCTC 60.202 50.000 9.12 0.00 0.00 2.87
2124 2144 3.695556 GCTCCTAGACGGTTAGAAGTTCT 59.304 47.826 10.87 10.87 0.00 3.01
2125 2145 3.181488 GGCTCCTAGACGGTTAGAAGTTC 60.181 52.174 0.00 0.00 0.00 3.01
2126 2146 2.759535 GGCTCCTAGACGGTTAGAAGTT 59.240 50.000 0.00 0.00 0.00 2.66
2127 2147 2.377073 GGCTCCTAGACGGTTAGAAGT 58.623 52.381 0.00 0.00 0.00 3.01
2128 2148 1.682323 GGGCTCCTAGACGGTTAGAAG 59.318 57.143 0.00 0.00 0.00 2.85
2129 2149 1.006281 TGGGCTCCTAGACGGTTAGAA 59.994 52.381 0.00 0.00 0.00 2.10
2130 2150 0.627451 TGGGCTCCTAGACGGTTAGA 59.373 55.000 0.00 0.00 0.00 2.10
2131 2151 1.409427 CTTGGGCTCCTAGACGGTTAG 59.591 57.143 0.00 0.00 0.00 2.34
2132 2152 1.481871 CTTGGGCTCCTAGACGGTTA 58.518 55.000 0.00 0.00 0.00 2.85
2133 2153 1.900545 GCTTGGGCTCCTAGACGGTT 61.901 60.000 6.82 0.00 35.22 4.44
2134 2154 2.359967 GCTTGGGCTCCTAGACGGT 61.360 63.158 6.82 0.00 35.22 4.83
2135 2155 2.501610 GCTTGGGCTCCTAGACGG 59.498 66.667 6.82 0.00 35.22 4.79
2145 2165 1.960689 TGTTACTTTTGGAGCTTGGGC 59.039 47.619 0.00 0.00 39.06 5.36
2146 2166 3.636764 ACTTGTTACTTTTGGAGCTTGGG 59.363 43.478 0.00 0.00 0.00 4.12
2147 2167 4.918810 ACTTGTTACTTTTGGAGCTTGG 57.081 40.909 0.00 0.00 0.00 3.61
2148 2168 6.912591 CACTAACTTGTTACTTTTGGAGCTTG 59.087 38.462 0.00 0.00 0.00 4.01
2149 2169 6.039382 CCACTAACTTGTTACTTTTGGAGCTT 59.961 38.462 0.00 0.00 0.00 3.74
2150 2170 5.531287 CCACTAACTTGTTACTTTTGGAGCT 59.469 40.000 0.00 0.00 0.00 4.09
2151 2171 5.529800 TCCACTAACTTGTTACTTTTGGAGC 59.470 40.000 0.00 0.00 0.00 4.70
2152 2172 6.990349 TCTCCACTAACTTGTTACTTTTGGAG 59.010 38.462 18.31 18.31 46.05 3.86
2153 2173 6.891388 TCTCCACTAACTTGTTACTTTTGGA 58.109 36.000 0.00 0.00 0.00 3.53
2154 2174 7.745620 ATCTCCACTAACTTGTTACTTTTGG 57.254 36.000 0.00 0.00 0.00 3.28
2162 2182 9.384764 GAGCTTATTTATCTCCACTAACTTGTT 57.615 33.333 0.00 0.00 0.00 2.83
2163 2183 8.540388 TGAGCTTATTTATCTCCACTAACTTGT 58.460 33.333 0.00 0.00 0.00 3.16
2164 2184 8.948631 TGAGCTTATTTATCTCCACTAACTTG 57.051 34.615 0.00 0.00 0.00 3.16
2165 2185 8.982723 TCTGAGCTTATTTATCTCCACTAACTT 58.017 33.333 0.00 0.00 0.00 2.66
2166 2186 8.540507 TCTGAGCTTATTTATCTCCACTAACT 57.459 34.615 0.00 0.00 0.00 2.24
2167 2187 9.601217 TTTCTGAGCTTATTTATCTCCACTAAC 57.399 33.333 0.00 0.00 0.00 2.34
2169 2189 9.601217 GTTTTCTGAGCTTATTTATCTCCACTA 57.399 33.333 0.00 0.00 0.00 2.74
2170 2190 8.103305 TGTTTTCTGAGCTTATTTATCTCCACT 58.897 33.333 0.00 0.00 0.00 4.00
2171 2191 8.178313 GTGTTTTCTGAGCTTATTTATCTCCAC 58.822 37.037 0.00 0.00 0.00 4.02
2172 2192 7.882791 TGTGTTTTCTGAGCTTATTTATCTCCA 59.117 33.333 0.00 0.00 0.00 3.86
2173 2193 8.268850 TGTGTTTTCTGAGCTTATTTATCTCC 57.731 34.615 0.00 0.00 0.00 3.71
2178 2198 9.897744 CTGATTTGTGTTTTCTGAGCTTATTTA 57.102 29.630 0.00 0.00 0.00 1.40
2179 2199 8.416329 ACTGATTTGTGTTTTCTGAGCTTATTT 58.584 29.630 0.00 0.00 0.00 1.40
2180 2200 7.945134 ACTGATTTGTGTTTTCTGAGCTTATT 58.055 30.769 0.00 0.00 0.00 1.40
2181 2201 7.516198 ACTGATTTGTGTTTTCTGAGCTTAT 57.484 32.000 0.00 0.00 0.00 1.73
2182 2202 6.942532 ACTGATTTGTGTTTTCTGAGCTTA 57.057 33.333 0.00 0.00 0.00 3.09
2183 2203 5.841957 ACTGATTTGTGTTTTCTGAGCTT 57.158 34.783 0.00 0.00 0.00 3.74
2184 2204 5.841957 AACTGATTTGTGTTTTCTGAGCT 57.158 34.783 0.00 0.00 0.00 4.09
2185 2205 5.232838 CCAAACTGATTTGTGTTTTCTGAGC 59.767 40.000 0.00 0.00 43.23 4.26
2186 2206 6.332630 ACCAAACTGATTTGTGTTTTCTGAG 58.667 36.000 0.00 0.00 43.23 3.35
2187 2207 6.279513 ACCAAACTGATTTGTGTTTTCTGA 57.720 33.333 0.00 0.00 43.23 3.27
2188 2208 6.697019 CCTACCAAACTGATTTGTGTTTTCTG 59.303 38.462 0.00 0.00 43.23 3.02
2189 2209 6.605594 TCCTACCAAACTGATTTGTGTTTTCT 59.394 34.615 0.00 0.00 43.23 2.52
2190 2210 6.801575 TCCTACCAAACTGATTTGTGTTTTC 58.198 36.000 0.00 0.00 43.23 2.29
2191 2211 6.783708 TCCTACCAAACTGATTTGTGTTTT 57.216 33.333 0.00 0.00 43.23 2.43
2192 2212 6.783708 TTCCTACCAAACTGATTTGTGTTT 57.216 33.333 0.00 0.00 43.23 2.83
2193 2213 6.323739 ACATTCCTACCAAACTGATTTGTGTT 59.676 34.615 0.00 0.00 43.23 3.32
2194 2214 5.833131 ACATTCCTACCAAACTGATTTGTGT 59.167 36.000 0.00 0.66 43.23 3.72
2195 2215 6.331369 ACATTCCTACCAAACTGATTTGTG 57.669 37.500 0.00 0.00 43.23 3.33
2196 2216 7.458397 TCTACATTCCTACCAAACTGATTTGT 58.542 34.615 0.00 0.00 43.23 2.83
2197 2217 7.921786 TCTACATTCCTACCAAACTGATTTG 57.078 36.000 0.00 0.00 44.19 2.32
2198 2218 9.838339 CTATCTACATTCCTACCAAACTGATTT 57.162 33.333 0.00 0.00 0.00 2.17
2199 2219 8.432805 CCTATCTACATTCCTACCAAACTGATT 58.567 37.037 0.00 0.00 0.00 2.57
2200 2220 7.016661 CCCTATCTACATTCCTACCAAACTGAT 59.983 40.741 0.00 0.00 0.00 2.90
2201 2221 6.326583 CCCTATCTACATTCCTACCAAACTGA 59.673 42.308 0.00 0.00 0.00 3.41
2202 2222 6.099845 ACCCTATCTACATTCCTACCAAACTG 59.900 42.308 0.00 0.00 0.00 3.16
2203 2223 6.099845 CACCCTATCTACATTCCTACCAAACT 59.900 42.308 0.00 0.00 0.00 2.66
2204 2224 6.099269 TCACCCTATCTACATTCCTACCAAAC 59.901 42.308 0.00 0.00 0.00 2.93
2205 2225 6.206787 TCACCCTATCTACATTCCTACCAAA 58.793 40.000 0.00 0.00 0.00 3.28
2206 2226 5.784023 TCACCCTATCTACATTCCTACCAA 58.216 41.667 0.00 0.00 0.00 3.67
2207 2227 5.412617 TCACCCTATCTACATTCCTACCA 57.587 43.478 0.00 0.00 0.00 3.25
2208 2228 6.936968 ATTCACCCTATCTACATTCCTACC 57.063 41.667 0.00 0.00 0.00 3.18
2209 2229 8.697292 GGATATTCACCCTATCTACATTCCTAC 58.303 40.741 0.00 0.00 0.00 3.18
2210 2230 8.633724 AGGATATTCACCCTATCTACATTCCTA 58.366 37.037 0.00 0.00 0.00 2.94
2211 2231 7.491681 AGGATATTCACCCTATCTACATTCCT 58.508 38.462 0.00 0.00 0.00 3.36
2212 2232 7.147637 GGAGGATATTCACCCTATCTACATTCC 60.148 44.444 0.00 0.00 31.84 3.01
2213 2233 7.400339 TGGAGGATATTCACCCTATCTACATTC 59.600 40.741 0.00 0.00 31.84 2.67
2214 2234 7.256399 TGGAGGATATTCACCCTATCTACATT 58.744 38.462 0.00 0.00 31.84 2.71
2215 2235 6.815880 TGGAGGATATTCACCCTATCTACAT 58.184 40.000 0.00 0.00 31.84 2.29
2216 2236 6.227624 TGGAGGATATTCACCCTATCTACA 57.772 41.667 0.00 0.00 31.84 2.74
2217 2237 7.147637 GGATTGGAGGATATTCACCCTATCTAC 60.148 44.444 12.86 0.57 32.41 2.59
2218 2238 6.903534 GGATTGGAGGATATTCACCCTATCTA 59.096 42.308 12.86 0.00 32.41 1.98
2219 2239 5.728741 GGATTGGAGGATATTCACCCTATCT 59.271 44.000 12.86 0.00 32.41 1.98
2220 2240 5.104318 GGGATTGGAGGATATTCACCCTATC 60.104 48.000 0.00 2.50 31.84 2.08
2221 2241 4.790790 GGGATTGGAGGATATTCACCCTAT 59.209 45.833 0.00 0.00 31.84 2.57
2222 2242 4.175962 GGGATTGGAGGATATTCACCCTA 58.824 47.826 0.00 0.00 31.84 3.53
2223 2243 2.989571 GGGATTGGAGGATATTCACCCT 59.010 50.000 0.00 0.00 35.02 4.34
2224 2244 2.716424 TGGGATTGGAGGATATTCACCC 59.284 50.000 0.00 0.00 35.82 4.61
2225 2245 4.664688 ATGGGATTGGAGGATATTCACC 57.335 45.455 0.00 0.00 0.00 4.02
2226 2246 8.655935 ATTTAATGGGATTGGAGGATATTCAC 57.344 34.615 0.00 0.00 0.00 3.18
2227 2247 8.455309 TGATTTAATGGGATTGGAGGATATTCA 58.545 33.333 0.00 0.00 0.00 2.57
2228 2248 8.884124 TGATTTAATGGGATTGGAGGATATTC 57.116 34.615 0.00 0.00 0.00 1.75
2229 2249 8.681584 TCTGATTTAATGGGATTGGAGGATATT 58.318 33.333 0.00 0.00 0.00 1.28
2230 2250 8.235855 TCTGATTTAATGGGATTGGAGGATAT 57.764 34.615 0.00 0.00 0.00 1.63
2231 2251 7.295672 ACTCTGATTTAATGGGATTGGAGGATA 59.704 37.037 0.00 0.00 0.00 2.59
2232 2252 6.103797 ACTCTGATTTAATGGGATTGGAGGAT 59.896 38.462 0.00 0.00 0.00 3.24
2233 2253 5.433051 ACTCTGATTTAATGGGATTGGAGGA 59.567 40.000 0.00 0.00 0.00 3.71
2234 2254 5.533903 CACTCTGATTTAATGGGATTGGAGG 59.466 44.000 0.00 0.00 0.00 4.30
2235 2255 6.125029 ACACTCTGATTTAATGGGATTGGAG 58.875 40.000 0.00 0.00 0.00 3.86
2236 2256 6.078456 ACACTCTGATTTAATGGGATTGGA 57.922 37.500 0.00 0.00 0.00 3.53
2237 2257 6.780457 AACACTCTGATTTAATGGGATTGG 57.220 37.500 0.00 0.00 0.00 3.16
2260 2280 1.422024 TCCGTCCTCATCCACCAAAAA 59.578 47.619 0.00 0.00 0.00 1.94
2261 2281 1.060729 TCCGTCCTCATCCACCAAAA 58.939 50.000 0.00 0.00 0.00 2.44
2262 2282 1.060729 TTCCGTCCTCATCCACCAAA 58.939 50.000 0.00 0.00 0.00 3.28
2263 2283 1.060729 TTTCCGTCCTCATCCACCAA 58.939 50.000 0.00 0.00 0.00 3.67
2264 2284 1.209504 GATTTCCGTCCTCATCCACCA 59.790 52.381 0.00 0.00 0.00 4.17
2265 2285 1.486726 AGATTTCCGTCCTCATCCACC 59.513 52.381 0.00 0.00 0.00 4.61
2266 2286 2.168521 TGAGATTTCCGTCCTCATCCAC 59.831 50.000 0.00 0.00 32.57 4.02
2267 2287 2.466846 TGAGATTTCCGTCCTCATCCA 58.533 47.619 0.00 0.00 32.57 3.41
2268 2288 3.462021 CTTGAGATTTCCGTCCTCATCC 58.538 50.000 0.00 0.00 36.88 3.51
2269 2289 2.869192 GCTTGAGATTTCCGTCCTCATC 59.131 50.000 0.00 0.00 36.88 2.92
2270 2290 2.503356 AGCTTGAGATTTCCGTCCTCAT 59.497 45.455 0.00 0.00 36.88 2.90
2271 2291 1.902508 AGCTTGAGATTTCCGTCCTCA 59.097 47.619 0.00 0.00 35.38 3.86
2272 2292 2.682155 AGCTTGAGATTTCCGTCCTC 57.318 50.000 0.00 0.00 0.00 3.71
2273 2293 3.244561 TGAAAGCTTGAGATTTCCGTCCT 60.245 43.478 16.42 0.00 46.46 3.85
2274 2294 3.074412 TGAAAGCTTGAGATTTCCGTCC 58.926 45.455 16.42 0.00 46.46 4.79
2275 2295 4.378874 CCTTGAAAGCTTGAGATTTCCGTC 60.379 45.833 16.42 0.00 46.46 4.79
2276 2296 3.503748 CCTTGAAAGCTTGAGATTTCCGT 59.496 43.478 16.42 0.00 46.46 4.69
2277 2297 3.503748 ACCTTGAAAGCTTGAGATTTCCG 59.496 43.478 16.42 9.22 46.46 4.30
2278 2298 5.459536 AACCTTGAAAGCTTGAGATTTCC 57.540 39.130 16.42 2.91 46.46 3.13
2279 2299 6.507023 TCAAACCTTGAAAGCTTGAGATTTC 58.493 36.000 13.27 13.27 46.99 2.17
2280 2300 6.469782 TCAAACCTTGAAAGCTTGAGATTT 57.530 33.333 0.00 0.00 36.59 2.17
2281 2301 6.469782 TTCAAACCTTGAAAGCTTGAGATT 57.530 33.333 0.00 0.00 45.94 2.40
2293 2313 3.336509 TCCCCCATTTTCAAACCTTGA 57.663 42.857 0.00 0.00 38.04 3.02
2294 2314 3.582208 TCATCCCCCATTTTCAAACCTTG 59.418 43.478 0.00 0.00 0.00 3.61
2295 2315 3.868062 TCATCCCCCATTTTCAAACCTT 58.132 40.909 0.00 0.00 0.00 3.50
2296 2316 3.558608 TCATCCCCCATTTTCAAACCT 57.441 42.857 0.00 0.00 0.00 3.50
2297 2317 4.578871 CTTTCATCCCCCATTTTCAAACC 58.421 43.478 0.00 0.00 0.00 3.27
2298 2318 4.002982 GCTTTCATCCCCCATTTTCAAAC 58.997 43.478 0.00 0.00 0.00 2.93
2299 2319 3.909364 AGCTTTCATCCCCCATTTTCAAA 59.091 39.130 0.00 0.00 0.00 2.69
2300 2320 3.519667 AGCTTTCATCCCCCATTTTCAA 58.480 40.909 0.00 0.00 0.00 2.69
2301 2321 3.188880 AGCTTTCATCCCCCATTTTCA 57.811 42.857 0.00 0.00 0.00 2.69
2302 2322 3.865446 CAAGCTTTCATCCCCCATTTTC 58.135 45.455 0.00 0.00 0.00 2.29
2303 2323 2.026915 GCAAGCTTTCATCCCCCATTTT 60.027 45.455 0.00 0.00 0.00 1.82
2304 2324 1.556451 GCAAGCTTTCATCCCCCATTT 59.444 47.619 0.00 0.00 0.00 2.32
2305 2325 1.197812 GCAAGCTTTCATCCCCCATT 58.802 50.000 0.00 0.00 0.00 3.16
2306 2326 0.041535 TGCAAGCTTTCATCCCCCAT 59.958 50.000 0.00 0.00 0.00 4.00
2307 2327 0.899717 GTGCAAGCTTTCATCCCCCA 60.900 55.000 1.17 0.00 0.00 4.96
2308 2328 0.899717 TGTGCAAGCTTTCATCCCCC 60.900 55.000 1.17 0.00 0.00 5.40
2309 2329 0.968405 TTGTGCAAGCTTTCATCCCC 59.032 50.000 1.17 0.00 0.00 4.81
2310 2330 1.888512 TCTTGTGCAAGCTTTCATCCC 59.111 47.619 1.17 0.00 38.28 3.85
2311 2331 3.863142 ATCTTGTGCAAGCTTTCATCC 57.137 42.857 1.17 0.00 38.28 3.51
2312 2332 4.801891 TCAATCTTGTGCAAGCTTTCATC 58.198 39.130 1.17 0.00 38.28 2.92
2313 2333 4.321750 CCTCAATCTTGTGCAAGCTTTCAT 60.322 41.667 1.17 0.00 38.28 2.57
2314 2334 3.005050 CCTCAATCTTGTGCAAGCTTTCA 59.995 43.478 0.00 0.00 38.28 2.69
2315 2335 3.005155 ACCTCAATCTTGTGCAAGCTTTC 59.995 43.478 0.00 0.00 38.28 2.62
2316 2336 2.961062 ACCTCAATCTTGTGCAAGCTTT 59.039 40.909 0.00 1.60 38.28 3.51
2317 2337 2.590821 ACCTCAATCTTGTGCAAGCTT 58.409 42.857 7.03 0.00 38.28 3.74
2318 2338 2.283145 ACCTCAATCTTGTGCAAGCT 57.717 45.000 7.03 0.00 38.28 3.74
2319 2339 2.294233 TCAACCTCAATCTTGTGCAAGC 59.706 45.455 7.03 0.00 38.28 4.01
2320 2340 4.543692 CTTCAACCTCAATCTTGTGCAAG 58.456 43.478 5.63 5.63 39.71 4.01
2321 2341 3.318839 CCTTCAACCTCAATCTTGTGCAA 59.681 43.478 0.00 0.00 0.00 4.08
2322 2342 2.886523 CCTTCAACCTCAATCTTGTGCA 59.113 45.455 0.00 0.00 0.00 4.57
2323 2343 2.887152 ACCTTCAACCTCAATCTTGTGC 59.113 45.455 0.00 0.00 0.00 4.57
2324 2344 3.254166 CCACCTTCAACCTCAATCTTGTG 59.746 47.826 0.00 0.00 0.00 3.33
2325 2345 3.138283 TCCACCTTCAACCTCAATCTTGT 59.862 43.478 0.00 0.00 0.00 3.16
2326 2346 3.754965 TCCACCTTCAACCTCAATCTTG 58.245 45.455 0.00 0.00 0.00 3.02
2327 2347 4.401925 CTTCCACCTTCAACCTCAATCTT 58.598 43.478 0.00 0.00 0.00 2.40
2328 2348 3.245052 CCTTCCACCTTCAACCTCAATCT 60.245 47.826 0.00 0.00 0.00 2.40
2329 2349 3.084786 CCTTCCACCTTCAACCTCAATC 58.915 50.000 0.00 0.00 0.00 2.67
2330 2350 2.716424 TCCTTCCACCTTCAACCTCAAT 59.284 45.455 0.00 0.00 0.00 2.57
2331 2351 2.106511 CTCCTTCCACCTTCAACCTCAA 59.893 50.000 0.00 0.00 0.00 3.02
2332 2352 1.699634 CTCCTTCCACCTTCAACCTCA 59.300 52.381 0.00 0.00 0.00 3.86
2333 2353 1.978580 TCTCCTTCCACCTTCAACCTC 59.021 52.381 0.00 0.00 0.00 3.85
2334 2354 1.981495 CTCTCCTTCCACCTTCAACCT 59.019 52.381 0.00 0.00 0.00 3.50
2335 2355 1.003696 CCTCTCCTTCCACCTTCAACC 59.996 57.143 0.00 0.00 0.00 3.77
2336 2356 1.003696 CCCTCTCCTTCCACCTTCAAC 59.996 57.143 0.00 0.00 0.00 3.18
2337 2357 1.362224 CCCTCTCCTTCCACCTTCAA 58.638 55.000 0.00 0.00 0.00 2.69
2338 2358 0.547712 CCCCTCTCCTTCCACCTTCA 60.548 60.000 0.00 0.00 0.00 3.02
2339 2359 1.275421 CCCCCTCTCCTTCCACCTTC 61.275 65.000 0.00 0.00 0.00 3.46
2340 2360 1.229984 CCCCCTCTCCTTCCACCTT 60.230 63.158 0.00 0.00 0.00 3.50
2341 2361 1.160289 TACCCCCTCTCCTTCCACCT 61.160 60.000 0.00 0.00 0.00 4.00
2342 2362 0.029989 ATACCCCCTCTCCTTCCACC 60.030 60.000 0.00 0.00 0.00 4.61
2343 2363 1.894699 AATACCCCCTCTCCTTCCAC 58.105 55.000 0.00 0.00 0.00 4.02
2344 2364 2.680439 AAATACCCCCTCTCCTTCCA 57.320 50.000 0.00 0.00 0.00 3.53
2345 2365 5.013913 GGTTATAAATACCCCCTCTCCTTCC 59.986 48.000 0.00 0.00 0.00 3.46
2346 2366 6.124316 GGTTATAAATACCCCCTCTCCTTC 57.876 45.833 0.00 0.00 0.00 3.46
2357 2377 6.008331 CCTTAGCCTTGGGGTTATAAATACC 58.992 44.000 0.00 0.00 34.28 2.73
2358 2378 6.607970 ACCTTAGCCTTGGGGTTATAAATAC 58.392 40.000 0.00 0.00 34.28 1.89
2359 2379 6.851965 ACCTTAGCCTTGGGGTTATAAATA 57.148 37.500 0.00 0.00 34.28 1.40
2360 2380 5.744274 ACCTTAGCCTTGGGGTTATAAAT 57.256 39.130 0.00 0.00 34.28 1.40
2361 2381 5.732661 ACTACCTTAGCCTTGGGGTTATAAA 59.267 40.000 0.00 0.00 34.28 1.40
2362 2382 5.291161 ACTACCTTAGCCTTGGGGTTATAA 58.709 41.667 0.00 0.00 34.28 0.98
2363 2383 4.899486 ACTACCTTAGCCTTGGGGTTATA 58.101 43.478 0.00 0.00 34.28 0.98
2364 2384 3.715315 GACTACCTTAGCCTTGGGGTTAT 59.285 47.826 0.00 0.00 34.28 1.89
2365 2385 3.109928 GACTACCTTAGCCTTGGGGTTA 58.890 50.000 0.00 0.00 34.28 2.85
2366 2386 1.914108 GACTACCTTAGCCTTGGGGTT 59.086 52.381 0.00 0.00 34.28 4.11
2367 2387 1.581223 GACTACCTTAGCCTTGGGGT 58.419 55.000 0.00 0.00 37.19 4.95
2368 2388 0.464452 CGACTACCTTAGCCTTGGGG 59.536 60.000 0.00 0.00 0.00 4.96
2369 2389 1.192428 ACGACTACCTTAGCCTTGGG 58.808 55.000 0.00 0.00 0.00 4.12
2370 2390 2.618053 CAACGACTACCTTAGCCTTGG 58.382 52.381 0.00 0.00 0.00 3.61
2371 2391 2.000447 GCAACGACTACCTTAGCCTTG 59.000 52.381 0.00 0.00 0.00 3.61
2372 2392 1.066358 GGCAACGACTACCTTAGCCTT 60.066 52.381 0.00 0.00 37.67 4.35
2373 2393 0.535797 GGCAACGACTACCTTAGCCT 59.464 55.000 0.00 0.00 37.67 4.58
2374 2394 0.461516 GGGCAACGACTACCTTAGCC 60.462 60.000 0.00 0.00 39.86 3.93
2375 2395 0.248289 TGGGCAACGACTACCTTAGC 59.752 55.000 0.00 0.00 37.60 3.09
2376 2396 1.739371 GCTGGGCAACGACTACCTTAG 60.739 57.143 0.00 0.00 37.60 2.18
2377 2397 0.248289 GCTGGGCAACGACTACCTTA 59.752 55.000 0.00 0.00 37.60 2.69
2378 2398 1.003718 GCTGGGCAACGACTACCTT 60.004 57.895 0.00 0.00 37.60 3.50
2379 2399 2.663196 GCTGGGCAACGACTACCT 59.337 61.111 0.00 0.00 37.60 3.08
2380 2400 2.436115 GGCTGGGCAACGACTACC 60.436 66.667 0.00 0.00 37.60 3.18
2381 2401 1.741770 CTGGCTGGGCAACGACTAC 60.742 63.158 0.00 0.00 37.60 2.73
2382 2402 2.662596 CTGGCTGGGCAACGACTA 59.337 61.111 0.00 0.00 37.60 2.59
2385 2405 4.577677 TTGCTGGCTGGGCAACGA 62.578 61.111 8.48 0.00 43.50 3.85
2388 2408 4.223125 AGGTTGCTGGCTGGGCAA 62.223 61.111 8.48 8.48 45.70 4.52
2389 2409 4.666253 GAGGTTGCTGGCTGGGCA 62.666 66.667 0.00 0.00 37.97 5.36
2390 2410 4.666253 TGAGGTTGCTGGCTGGGC 62.666 66.667 0.00 0.00 0.00 5.36
2391 2411 2.360852 CTGAGGTTGCTGGCTGGG 60.361 66.667 0.00 0.00 0.00 4.45
2392 2412 2.360852 CCTGAGGTTGCTGGCTGG 60.361 66.667 0.00 0.00 0.00 4.85
2393 2413 3.060615 GCCTGAGGTTGCTGGCTG 61.061 66.667 0.00 0.00 45.96 4.85
2396 2416 2.674380 GGTGCCTGAGGTTGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
2397 2417 2.674380 GGGTGCCTGAGGTTGCTG 60.674 66.667 0.00 0.00 0.00 4.41
2398 2418 4.335647 CGGGTGCCTGAGGTTGCT 62.336 66.667 0.00 0.00 0.00 3.91
2400 2420 3.636231 TCCGGGTGCCTGAGGTTG 61.636 66.667 0.00 0.00 0.00 3.77
2401 2421 3.637273 GTCCGGGTGCCTGAGGTT 61.637 66.667 0.00 0.00 0.00 3.50
2404 2424 2.690653 TTTTGGTCCGGGTGCCTGAG 62.691 60.000 0.00 0.00 0.00 3.35
2405 2425 2.758207 TTTTGGTCCGGGTGCCTGA 61.758 57.895 0.00 0.00 0.00 3.86
2406 2426 2.203422 TTTTGGTCCGGGTGCCTG 60.203 61.111 0.00 0.00 0.00 4.85
2407 2427 2.203437 GTTTTGGTCCGGGTGCCT 60.203 61.111 0.00 0.00 0.00 4.75
2408 2428 3.666253 CGTTTTGGTCCGGGTGCC 61.666 66.667 0.00 2.23 0.00 5.01
2409 2429 3.666253 CCGTTTTGGTCCGGGTGC 61.666 66.667 0.00 0.00 40.54 5.01
2418 2438 2.125202 GAGTGGCCGAACCGTTTTGG 62.125 60.000 0.00 0.00 43.94 3.28
2419 2439 1.281656 GAGTGGCCGAACCGTTTTG 59.718 57.895 0.00 0.00 43.94 2.44
2420 2440 2.248835 CGAGTGGCCGAACCGTTTT 61.249 57.895 0.00 0.00 43.94 2.43
2421 2441 2.663852 CGAGTGGCCGAACCGTTT 60.664 61.111 0.00 0.00 43.94 3.60
2422 2442 4.675029 CCGAGTGGCCGAACCGTT 62.675 66.667 0.00 0.00 43.94 4.44
2425 2445 4.754667 GGTCCGAGTGGCCGAACC 62.755 72.222 0.00 0.00 39.84 3.62
2426 2446 3.934391 CTGGTCCGAGTGGCCGAAC 62.934 68.421 0.00 0.00 35.06 3.95
2427 2447 3.691342 CTGGTCCGAGTGGCCGAA 61.691 66.667 0.00 0.00 35.06 4.30
2428 2448 4.988716 ACTGGTCCGAGTGGCCGA 62.989 66.667 0.00 0.00 35.06 5.54
2429 2449 4.436998 GACTGGTCCGAGTGGCCG 62.437 72.222 0.00 0.00 35.06 6.13
2430 2450 3.311110 TGACTGGTCCGAGTGGCC 61.311 66.667 0.00 0.00 34.14 5.36
2431 2451 1.248785 TAGTGACTGGTCCGAGTGGC 61.249 60.000 0.00 0.00 34.14 5.01
2432 2452 0.811915 CTAGTGACTGGTCCGAGTGG 59.188 60.000 0.00 0.00 0.00 4.00
2433 2453 0.171455 GCTAGTGACTGGTCCGAGTG 59.829 60.000 0.00 0.00 0.00 3.51
2434 2454 0.251209 TGCTAGTGACTGGTCCGAGT 60.251 55.000 0.00 0.00 0.00 4.18
2435 2455 0.888619 TTGCTAGTGACTGGTCCGAG 59.111 55.000 0.00 0.00 0.00 4.63
2436 2456 1.476891 GATTGCTAGTGACTGGTCCGA 59.523 52.381 0.00 0.00 0.00 4.55
2437 2457 1.204704 TGATTGCTAGTGACTGGTCCG 59.795 52.381 0.00 0.00 0.00 4.79
2438 2458 2.622436 GTGATTGCTAGTGACTGGTCC 58.378 52.381 0.00 0.00 0.00 4.46
2439 2459 2.263077 CGTGATTGCTAGTGACTGGTC 58.737 52.381 0.00 0.00 0.00 4.02
2440 2460 1.066858 CCGTGATTGCTAGTGACTGGT 60.067 52.381 0.00 0.00 0.00 4.00
2441 2461 1.204704 TCCGTGATTGCTAGTGACTGG 59.795 52.381 0.00 0.00 0.00 4.00
2442 2462 2.534298 CTCCGTGATTGCTAGTGACTG 58.466 52.381 0.00 0.00 0.00 3.51
2443 2463 1.478510 CCTCCGTGATTGCTAGTGACT 59.521 52.381 0.00 0.00 0.00 3.41
2444 2464 1.927895 CCTCCGTGATTGCTAGTGAC 58.072 55.000 0.00 0.00 0.00 3.67
2445 2465 0.175760 GCCTCCGTGATTGCTAGTGA 59.824 55.000 0.00 0.00 0.00 3.41
2446 2466 0.811616 GGCCTCCGTGATTGCTAGTG 60.812 60.000 0.00 0.00 0.00 2.74
2447 2467 1.522569 GGCCTCCGTGATTGCTAGT 59.477 57.895 0.00 0.00 0.00 2.57
2448 2468 1.227674 GGGCCTCCGTGATTGCTAG 60.228 63.158 0.84 0.00 0.00 3.42
2449 2469 2.908015 GGGCCTCCGTGATTGCTA 59.092 61.111 0.84 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.