Multiple sequence alignment - TraesCS5D01G237100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G237100 chr5D 100.000 5832 0 0 1 5832 345621855 345627686 0.000000e+00 10770.0
1 TraesCS5D01G237100 chr5D 94.392 1890 46 13 3967 5831 351321077 351322931 0.000000e+00 2848.0
2 TraesCS5D01G237100 chr5D 93.659 1577 38 14 4280 5832 443522613 443524151 0.000000e+00 2302.0
3 TraesCS5D01G237100 chr5D 94.872 897 38 5 3078 3969 443521253 443522146 0.000000e+00 1395.0
4 TraesCS5D01G237100 chr5D 83.445 1196 166 18 1674 2861 345642569 345643740 0.000000e+00 1083.0
5 TraesCS5D01G237100 chr5D 86.190 630 68 10 981 1607 345641742 345642355 0.000000e+00 664.0
6 TraesCS5D01G237100 chr6D 98.298 2762 31 5 3079 5832 441318137 441320890 0.000000e+00 4826.0
7 TraesCS5D01G237100 chr6D 96.965 1219 12 4 4623 5832 380785113 380786315 0.000000e+00 2023.0
8 TraesCS5D01G237100 chr4D 97.796 2768 30 7 3078 5832 489196329 489199078 0.000000e+00 4745.0
9 TraesCS5D01G237100 chr4D 99.027 1952 16 2 3078 5027 47510428 47508478 0.000000e+00 3496.0
10 TraesCS5D01G237100 chr4D 93.414 1898 61 22 3967 5832 440464491 440462626 0.000000e+00 2754.0
11 TraesCS5D01G237100 chr4D 94.760 897 40 4 3078 3969 440465455 440464561 0.000000e+00 1389.0
12 TraesCS5D01G237100 chr4D 98.217 785 6 2 5048 5832 47508493 47507717 0.000000e+00 1365.0
13 TraesCS5D01G237100 chr7D 98.385 1982 21 4 3077 5050 89090801 89088823 0.000000e+00 3472.0
14 TraesCS5D01G237100 chr7D 94.224 1887 50 12 3971 5832 70680131 70678279 0.000000e+00 2826.0
15 TraesCS5D01G237100 chr7D 94.130 1891 55 10 3967 5832 596122134 596120275 0.000000e+00 2826.0
16 TraesCS5D01G237100 chr7D 93.760 1891 52 14 3967 5832 530866493 530864644 0.000000e+00 2778.0
17 TraesCS5D01G237100 chr7D 94.270 1588 37 13 4269 5832 498406724 498408281 0.000000e+00 2379.0
18 TraesCS5D01G237100 chr7D 94.085 896 46 4 3079 3969 530867456 530866563 0.000000e+00 1354.0
19 TraesCS5D01G237100 chr7D 93.862 896 49 3 3079 3969 11642234 11643128 0.000000e+00 1345.0
20 TraesCS5D01G237100 chr7D 93.750 896 48 4 3079 3969 592400973 592401865 0.000000e+00 1338.0
21 TraesCS5D01G237100 chr7D 95.985 797 7 4 5045 5832 89086646 89085866 0.000000e+00 1271.0
22 TraesCS5D01G237100 chr7D 94.715 492 13 4 5344 5832 58114054 58113573 0.000000e+00 752.0
23 TraesCS5D01G237100 chr5A 87.198 2859 265 52 58 2867 445441720 445438914 0.000000e+00 3158.0
24 TraesCS5D01G237100 chr5B 88.280 1459 136 17 859 2303 406063894 406062457 0.000000e+00 1714.0
25 TraesCS5D01G237100 chr5B 83.795 1228 164 16 1651 2867 406053978 406052775 0.000000e+00 1133.0
26 TraesCS5D01G237100 chr5B 88.725 541 47 5 2335 2867 406062380 406061846 0.000000e+00 649.0
27 TraesCS5D01G237100 chr5B 85.374 629 74 8 981 1607 406054871 406054259 2.290000e-178 636.0
28 TraesCS5D01G237100 chr5B 80.458 568 49 34 241 782 406064418 406063887 1.530000e-100 377.0
29 TraesCS5D01G237100 chr2A 94.281 1119 50 6 3967 5082 458969839 458968732 0.000000e+00 1700.0
30 TraesCS5D01G237100 chr2D 96.033 479 7 3 5357 5832 639469702 639469233 0.000000e+00 769.0
31 TraesCS5D01G237100 chr2D 94.781 479 13 4 5357 5832 345269574 345270043 0.000000e+00 736.0
32 TraesCS5D01G237100 chr2D 89.796 49 5 0 2857 2905 128989409 128989457 4.880000e-06 63.9
33 TraesCS5D01G237100 chr1D 96.033 479 7 3 5357 5832 71302606 71303075 0.000000e+00 769.0
34 TraesCS5D01G237100 chr3A 86.885 61 8 0 2906 2966 360822494 360822554 1.050000e-07 69.4
35 TraesCS5D01G237100 chr3B 100.000 33 0 0 2906 2938 482487857 482487825 1.750000e-05 62.1
36 TraesCS5D01G237100 chr3B 90.909 44 4 0 2865 2908 566185119 566185076 6.310000e-05 60.2
37 TraesCS5D01G237100 chr3B 83.607 61 10 0 2906 2966 372237548 372237608 2.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G237100 chr5D 345621855 345627686 5831 False 10770.000000 10770 100.0000 1 5832 1 chr5D.!!$F1 5831
1 TraesCS5D01G237100 chr5D 351321077 351322931 1854 False 2848.000000 2848 94.3920 3967 5831 1 chr5D.!!$F2 1864
2 TraesCS5D01G237100 chr5D 443521253 443524151 2898 False 1848.500000 2302 94.2655 3078 5832 2 chr5D.!!$F4 2754
3 TraesCS5D01G237100 chr5D 345641742 345643740 1998 False 873.500000 1083 84.8175 981 2861 2 chr5D.!!$F3 1880
4 TraesCS5D01G237100 chr6D 441318137 441320890 2753 False 4826.000000 4826 98.2980 3079 5832 1 chr6D.!!$F2 2753
5 TraesCS5D01G237100 chr6D 380785113 380786315 1202 False 2023.000000 2023 96.9650 4623 5832 1 chr6D.!!$F1 1209
6 TraesCS5D01G237100 chr4D 489196329 489199078 2749 False 4745.000000 4745 97.7960 3078 5832 1 chr4D.!!$F1 2754
7 TraesCS5D01G237100 chr4D 47507717 47510428 2711 True 2430.500000 3496 98.6220 3078 5832 2 chr4D.!!$R1 2754
8 TraesCS5D01G237100 chr4D 440462626 440465455 2829 True 2071.500000 2754 94.0870 3078 5832 2 chr4D.!!$R2 2754
9 TraesCS5D01G237100 chr7D 70678279 70680131 1852 True 2826.000000 2826 94.2240 3971 5832 1 chr7D.!!$R2 1861
10 TraesCS5D01G237100 chr7D 596120275 596122134 1859 True 2826.000000 2826 94.1300 3967 5832 1 chr7D.!!$R3 1865
11 TraesCS5D01G237100 chr7D 498406724 498408281 1557 False 2379.000000 2379 94.2700 4269 5832 1 chr7D.!!$F2 1563
12 TraesCS5D01G237100 chr7D 89085866 89090801 4935 True 2371.500000 3472 97.1850 3077 5832 2 chr7D.!!$R4 2755
13 TraesCS5D01G237100 chr7D 530864644 530867456 2812 True 2066.000000 2778 93.9225 3079 5832 2 chr7D.!!$R5 2753
14 TraesCS5D01G237100 chr7D 11642234 11643128 894 False 1345.000000 1345 93.8620 3079 3969 1 chr7D.!!$F1 890
15 TraesCS5D01G237100 chr7D 592400973 592401865 892 False 1338.000000 1338 93.7500 3079 3969 1 chr7D.!!$F3 890
16 TraesCS5D01G237100 chr5A 445438914 445441720 2806 True 3158.000000 3158 87.1980 58 2867 1 chr5A.!!$R1 2809
17 TraesCS5D01G237100 chr5B 406061846 406064418 2572 True 913.333333 1714 85.8210 241 2867 3 chr5B.!!$R2 2626
18 TraesCS5D01G237100 chr5B 406052775 406054871 2096 True 884.500000 1133 84.5845 981 2867 2 chr5B.!!$R1 1886
19 TraesCS5D01G237100 chr2A 458968732 458969839 1107 True 1700.000000 1700 94.2810 3967 5082 1 chr2A.!!$R1 1115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.384725 CACTTTGCAGCGTGTGTAGC 60.385 55.0 8.75 0.0 0.00 3.58 F
1182 1238 0.105593 GAAGCTCAGATCCGCCATCA 59.894 55.0 0.00 0.0 33.29 3.07 F
2522 2876 0.107456 AAGATGCTACAGGATGGGCG 59.893 55.0 0.00 0.0 43.62 6.13 F
2955 3317 0.186386 AACACGGGTTTTGGGATGGA 59.814 50.0 0.00 0.0 31.83 3.41 F
3052 3414 0.323360 TGCCCACACCTTATCTTGGC 60.323 55.0 0.00 0.0 37.90 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2253 0.174162 GCTGGCCATCAATGTCAACC 59.826 55.000 5.51 0.0 0.00 3.77 R
2602 2956 0.035056 AAAGCATGGCCGTAAGCTCT 60.035 50.000 10.06 0.0 43.05 4.09 R
3496 3864 1.107114 GCTCTCCTCGTCATTCCAGA 58.893 55.000 0.00 0.0 0.00 3.86 R
4586 5110 4.313020 ACTCAATCTTTGCCTGATCCTT 57.687 40.909 0.00 0.0 0.00 3.36 R
4909 5437 9.238368 TGAAACTTTCCCAAAATATACACCTAG 57.762 33.333 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.066769 GCGCTGTCGACGAACATA 57.933 55.556 11.62 0.00 38.10 2.29
18 19 1.624323 GCGCTGTCGACGAACATAC 59.376 57.895 11.62 0.00 38.10 2.39
19 20 1.068832 GCGCTGTCGACGAACATACA 61.069 55.000 11.62 0.00 38.10 2.29
20 21 1.333115 CGCTGTCGACGAACATACAA 58.667 50.000 11.62 0.00 38.10 2.41
21 22 1.717113 CGCTGTCGACGAACATACAAA 59.283 47.619 11.62 0.00 38.10 2.83
22 23 2.222289 CGCTGTCGACGAACATACAAAG 60.222 50.000 11.62 0.00 38.10 2.77
23 24 2.092211 GCTGTCGACGAACATACAAAGG 59.908 50.000 11.62 0.00 0.00 3.11
24 25 2.666508 CTGTCGACGAACATACAAAGGG 59.333 50.000 11.62 0.00 0.00 3.95
25 26 2.036217 TGTCGACGAACATACAAAGGGT 59.964 45.455 11.62 0.00 0.00 4.34
26 27 2.665052 GTCGACGAACATACAAAGGGTC 59.335 50.000 0.00 0.00 0.00 4.46
27 28 2.296752 TCGACGAACATACAAAGGGTCA 59.703 45.455 0.00 0.00 0.00 4.02
28 29 2.666508 CGACGAACATACAAAGGGTCAG 59.333 50.000 0.00 0.00 0.00 3.51
29 30 3.613193 CGACGAACATACAAAGGGTCAGA 60.613 47.826 0.00 0.00 0.00 3.27
30 31 3.660865 ACGAACATACAAAGGGTCAGAC 58.339 45.455 0.00 0.00 0.00 3.51
31 32 3.323979 ACGAACATACAAAGGGTCAGACT 59.676 43.478 0.00 0.00 0.00 3.24
32 33 4.202326 ACGAACATACAAAGGGTCAGACTT 60.202 41.667 0.00 0.00 0.00 3.01
33 34 4.152402 CGAACATACAAAGGGTCAGACTTG 59.848 45.833 0.00 0.00 0.00 3.16
34 35 4.706842 ACATACAAAGGGTCAGACTTGT 57.293 40.909 10.57 10.57 0.00 3.16
35 36 5.818678 ACATACAAAGGGTCAGACTTGTA 57.181 39.130 13.48 13.48 0.00 2.41
36 37 5.548406 ACATACAAAGGGTCAGACTTGTAC 58.452 41.667 13.42 0.00 0.00 2.90
37 38 5.071250 ACATACAAAGGGTCAGACTTGTACA 59.929 40.000 13.42 0.00 0.00 2.90
38 39 4.706842 ACAAAGGGTCAGACTTGTACAT 57.293 40.909 0.00 0.00 0.00 2.29
39 40 5.048846 ACAAAGGGTCAGACTTGTACATT 57.951 39.130 0.00 0.00 0.00 2.71
40 41 4.821805 ACAAAGGGTCAGACTTGTACATTG 59.178 41.667 0.00 0.00 0.00 2.82
41 42 4.974645 AAGGGTCAGACTTGTACATTGA 57.025 40.909 0.00 0.00 0.00 2.57
42 43 5.505181 AAGGGTCAGACTTGTACATTGAT 57.495 39.130 0.00 0.00 0.00 2.57
43 44 4.836825 AGGGTCAGACTTGTACATTGATG 58.163 43.478 0.00 0.00 0.00 3.07
44 45 3.375299 GGGTCAGACTTGTACATTGATGC 59.625 47.826 0.00 0.00 0.00 3.91
45 46 4.256920 GGTCAGACTTGTACATTGATGCT 58.743 43.478 0.00 0.00 0.00 3.79
46 47 4.331168 GGTCAGACTTGTACATTGATGCTC 59.669 45.833 0.00 0.00 0.00 4.26
47 48 5.174395 GTCAGACTTGTACATTGATGCTCT 58.826 41.667 0.00 0.00 0.00 4.09
48 49 6.333416 GTCAGACTTGTACATTGATGCTCTA 58.667 40.000 0.00 0.00 0.00 2.43
49 50 6.813649 GTCAGACTTGTACATTGATGCTCTAA 59.186 38.462 0.00 0.00 0.00 2.10
50 51 7.009999 GTCAGACTTGTACATTGATGCTCTAAG 59.990 40.741 0.00 0.00 0.00 2.18
51 52 5.814705 AGACTTGTACATTGATGCTCTAAGC 59.185 40.000 0.00 0.00 42.82 3.09
52 53 5.738909 ACTTGTACATTGATGCTCTAAGCT 58.261 37.500 0.00 0.00 42.97 3.74
53 54 6.176183 ACTTGTACATTGATGCTCTAAGCTT 58.824 36.000 3.48 3.48 42.97 3.74
54 55 6.093219 ACTTGTACATTGATGCTCTAAGCTTG 59.907 38.462 9.86 0.00 42.97 4.01
55 56 4.333649 TGTACATTGATGCTCTAAGCTTGC 59.666 41.667 9.86 4.59 42.97 4.01
56 57 3.349927 ACATTGATGCTCTAAGCTTGCA 58.650 40.909 9.86 11.01 42.97 4.08
78 79 0.384725 CACTTTGCAGCGTGTGTAGC 60.385 55.000 8.75 0.00 0.00 3.58
88 89 1.714460 GCGTGTGTAGCGATAGTATGC 59.286 52.381 0.00 0.00 39.35 3.14
143 147 0.611618 TTACATGGCCTTGGCTGTGG 60.612 55.000 21.67 4.75 0.00 4.17
219 223 1.405526 CGACTCCATTGATTGACCGGT 60.406 52.381 6.92 6.92 0.00 5.28
315 336 3.568538 GCAGTGAAATGCTTTGAATCGT 58.431 40.909 0.00 0.00 43.07 3.73
383 404 3.242608 CGCAACAAGGAGAAAAAGTTCGA 60.243 43.478 0.00 0.00 38.90 3.71
407 428 2.980233 GAGCCCACCACAGCACAC 60.980 66.667 0.00 0.00 0.00 3.82
442 463 3.072944 AGAGAGAAACACTGCATGCTTC 58.927 45.455 20.33 13.51 34.17 3.86
443 464 3.072944 GAGAGAAACACTGCATGCTTCT 58.927 45.455 20.33 18.12 44.70 2.85
501 531 2.489938 TGCTGTCCACCCAAATCTAC 57.510 50.000 0.00 0.00 0.00 2.59
511 541 3.191371 CACCCAAATCTACAGAAAGCCAC 59.809 47.826 0.00 0.00 0.00 5.01
553 583 5.048294 GTCACCAAAAATGGAATCCTTACGT 60.048 40.000 0.00 0.00 0.00 3.57
596 634 8.528643 GTTCTACTTGCCCCAATTTAATTAAGT 58.471 33.333 7.60 7.60 0.00 2.24
755 800 1.264288 GTTGGCTTTGGTTCGACTCAG 59.736 52.381 0.00 0.00 0.00 3.35
889 934 5.465390 CAGAACTTTGTTCATTGTCGGTAGA 59.535 40.000 12.16 0.00 0.00 2.59
890 935 5.696724 AGAACTTTGTTCATTGTCGGTAGAG 59.303 40.000 12.16 0.00 0.00 2.43
929 974 7.013274 TGGTCTTCTTTTCGAGACAATCAATTT 59.987 33.333 5.93 0.00 33.02 1.82
954 999 7.212274 TCCTTGTTTTACACTGAGGTAGTTAC 58.788 38.462 0.00 0.00 37.60 2.50
1003 1054 2.436824 GCTCCAGCCGGTTCCTTC 60.437 66.667 1.90 0.00 34.31 3.46
1084 1138 0.107897 CATCCCCGTTCCATCGTTGA 60.108 55.000 0.00 0.00 0.00 3.18
1092 1147 2.348666 CGTTCCATCGTTGACTCCAATC 59.651 50.000 0.00 0.00 34.39 2.67
1104 1160 2.816087 GACTCCAATCAAAGCTCTTGCA 59.184 45.455 0.00 0.00 42.74 4.08
1106 1162 3.442977 ACTCCAATCAAAGCTCTTGCATC 59.557 43.478 0.00 0.00 42.74 3.91
1115 1171 0.322816 GCTCTTGCATCTGGGTGGAA 60.323 55.000 0.00 0.00 39.41 3.53
1117 1173 0.322816 TCTTGCATCTGGGTGGAAGC 60.323 55.000 9.69 0.00 44.30 3.86
1123 1179 2.826777 ATCTGGGTGGAAGCGCAAGG 62.827 60.000 11.47 0.00 38.28 3.61
1182 1238 0.105593 GAAGCTCAGATCCGCCATCA 59.894 55.000 0.00 0.00 33.29 3.07
1389 1451 2.287915 CAGCAAATGGAGGTATGTACGC 59.712 50.000 0.00 0.00 0.00 4.42
1390 1452 2.093181 AGCAAATGGAGGTATGTACGCA 60.093 45.455 0.00 0.00 0.00 5.24
1391 1453 2.878406 GCAAATGGAGGTATGTACGCAT 59.122 45.455 0.00 0.00 39.03 4.73
1392 1454 3.058914 GCAAATGGAGGTATGTACGCATC 60.059 47.826 0.00 0.00 36.58 3.91
1393 1455 4.126437 CAAATGGAGGTATGTACGCATCA 58.874 43.478 0.00 0.00 36.58 3.07
1403 1465 2.139917 TGTACGCATCAACTTCACCAC 58.860 47.619 0.00 0.00 0.00 4.16
1407 1469 1.338674 CGCATCAACTTCACCACCCTA 60.339 52.381 0.00 0.00 0.00 3.53
1410 1472 3.763897 GCATCAACTTCACCACCCTAAAT 59.236 43.478 0.00 0.00 0.00 1.40
1411 1473 4.220602 GCATCAACTTCACCACCCTAAATT 59.779 41.667 0.00 0.00 0.00 1.82
1412 1474 5.279456 GCATCAACTTCACCACCCTAAATTT 60.279 40.000 0.00 0.00 0.00 1.82
1438 1500 7.953158 TTTGATATAAAAGCTCAGAGATCCG 57.047 36.000 0.00 0.00 0.00 4.18
1472 1534 4.325119 GCTACGAGATCCATAGGTCACTA 58.675 47.826 0.00 0.00 0.00 2.74
1479 1541 8.701895 ACGAGATCCATAGGTCACTAAAAATAA 58.298 33.333 0.00 0.00 31.86 1.40
1510 1572 2.416107 CTGCAGGGGAAGAAGGTGCA 62.416 60.000 5.57 0.00 41.72 4.57
1632 1710 0.392193 GACCGTCCGAGTACTCCTGA 60.392 60.000 17.23 11.04 0.00 3.86
1711 2014 2.159296 TGACGAAGATGATACCACGTGG 60.159 50.000 32.83 32.83 42.17 4.94
1805 2108 3.065371 GGGTCGACATGGATGAATTCAAC 59.935 47.826 18.91 9.88 0.00 3.18
1823 2126 9.118300 GAATTCAACCTTATGTCATCTGATTCT 57.882 33.333 0.00 0.00 0.00 2.40
1824 2127 8.674263 ATTCAACCTTATGTCATCTGATTCTC 57.326 34.615 0.00 0.00 0.00 2.87
1854 2157 2.730382 TCGAGCCACCAGTTACTGATA 58.270 47.619 14.66 0.00 32.44 2.15
1898 2201 9.014297 CCAATGATTATAGGAAGGGATAAACAC 57.986 37.037 0.00 0.00 0.00 3.32
1917 2220 6.683974 AACACATACAGAGCATAATGGAAC 57.316 37.500 0.00 0.00 0.00 3.62
1932 2236 8.223769 GCATAATGGAACGTATATCTGTGAAAG 58.776 37.037 0.00 0.00 0.00 2.62
1940 2244 5.116180 CGTATATCTGTGAAAGAAGGGCAA 58.884 41.667 0.00 0.00 38.79 4.52
1949 2253 5.125900 TGTGAAAGAAGGGCAATACATCATG 59.874 40.000 0.00 0.00 0.00 3.07
1953 2257 3.956199 AGAAGGGCAATACATCATGGTTG 59.044 43.478 0.00 0.00 0.00 3.77
1968 2275 0.174162 GGTTGACATTGATGGCCAGC 59.826 55.000 15.83 15.83 33.92 4.85
2054 2361 1.813513 GGGTATGGATCCAATGCTCG 58.186 55.000 20.67 0.00 0.00 5.03
2056 2363 1.347707 GGTATGGATCCAATGCTCGGA 59.652 52.381 20.67 0.00 36.84 4.55
2057 2364 2.417719 GTATGGATCCAATGCTCGGAC 58.582 52.381 20.67 3.38 34.69 4.79
2058 2365 0.250038 ATGGATCCAATGCTCGGACG 60.250 55.000 20.67 0.00 34.69 4.79
2075 2382 0.517316 ACGATTTTCGCTTGCAGGAC 59.483 50.000 0.00 0.00 45.12 3.85
2086 2393 1.281867 CTTGCAGGACATGGGGAAGTA 59.718 52.381 0.00 0.00 0.00 2.24
2100 2407 5.437060 TGGGGAAGTACATAATTTCTCAGC 58.563 41.667 0.00 0.00 0.00 4.26
2114 2421 1.202330 CTCAGCTGTCAGGGGAAGAT 58.798 55.000 14.67 0.00 0.00 2.40
2179 2486 4.106197 CGACTTCACCAGCTACTTGATAC 58.894 47.826 0.00 0.00 0.00 2.24
2183 2490 4.920640 TCACCAGCTACTTGATACTAGC 57.079 45.455 0.00 0.00 36.40 3.42
2213 2520 5.065218 GGTACTTGTTGTCTTAGATGGCATG 59.935 44.000 3.81 0.00 0.00 4.06
2215 2522 5.072741 ACTTGTTGTCTTAGATGGCATGTT 58.927 37.500 3.81 0.00 0.00 2.71
2218 2525 4.458989 TGTTGTCTTAGATGGCATGTTTCC 59.541 41.667 3.81 0.00 0.00 3.13
2219 2526 4.299586 TGTCTTAGATGGCATGTTTCCA 57.700 40.909 3.81 0.00 38.09 3.53
2220 2527 4.858850 TGTCTTAGATGGCATGTTTCCAT 58.141 39.130 3.81 3.25 46.35 3.41
2249 2556 2.486191 GGATGATTGCGAGGAGTTGGAT 60.486 50.000 0.00 0.00 0.00 3.41
2261 2568 5.395324 CGAGGAGTTGGATGGTATGTTAAGT 60.395 44.000 0.00 0.00 0.00 2.24
2285 2592 1.134788 GGGGACAATCGTAGTGAGGTG 60.135 57.143 0.00 0.00 0.00 4.00
2292 2599 2.941453 TCGTAGTGAGGTGATCTTGC 57.059 50.000 0.00 0.00 0.00 4.01
2307 2614 1.512156 CTTGCTAACAACGGGCGGTT 61.512 55.000 4.42 4.42 40.22 4.44
2308 2615 1.102222 TTGCTAACAACGGGCGGTTT 61.102 50.000 7.80 0.00 36.49 3.27
2311 2618 0.798159 CTAACAACGGGCGGTTTACC 59.202 55.000 7.80 0.00 36.49 2.85
2328 2680 5.508922 GGTTTACCGCGTTGTAATGTATTTG 59.491 40.000 4.92 0.00 31.19 2.32
2331 2683 3.372822 ACCGCGTTGTAATGTATTTGAGG 59.627 43.478 4.92 0.00 0.00 3.86
2332 2684 3.619483 CCGCGTTGTAATGTATTTGAGGA 59.381 43.478 4.92 0.00 0.00 3.71
2333 2685 4.093703 CCGCGTTGTAATGTATTTGAGGAA 59.906 41.667 4.92 0.00 0.00 3.36
2338 2690 8.178964 GCGTTGTAATGTATTTGAGGAATGTAA 58.821 33.333 0.00 0.00 0.00 2.41
2522 2876 0.107456 AAGATGCTACAGGATGGGCG 59.893 55.000 0.00 0.00 43.62 6.13
2562 2916 4.456806 GGGCATATGACCGTGTCC 57.543 61.111 13.08 0.00 30.66 4.02
2590 2944 3.893200 CCATTCCTCATGTTGGCATACAT 59.107 43.478 8.77 8.77 39.27 2.29
2593 2947 6.040729 CCATTCCTCATGTTGGCATACATTAA 59.959 38.462 11.06 6.11 36.64 1.40
2614 2968 2.820037 GCCACAGAGCTTACGGCC 60.820 66.667 0.00 0.00 43.05 6.13
2643 2997 2.806244 ACTTACTGTGCGATGTTCCAAC 59.194 45.455 0.00 0.00 0.00 3.77
2706 3060 3.754323 GACTTCTCTCGGTCTTCTTGAGA 59.246 47.826 0.00 0.00 37.24 3.27
2762 3116 8.080417 GGTGAACAGTATATTACGATGCTTCTA 58.920 37.037 0.00 0.00 0.00 2.10
2793 3147 3.130340 ACTTCTTCAAACAACAATGCCGT 59.870 39.130 0.00 0.00 0.00 5.68
2817 3178 4.281435 TGTCGGTGAGTTAATCCACACTAA 59.719 41.667 10.86 0.00 35.13 2.24
2823 3184 7.063074 CGGTGAGTTAATCCACACTAAGTTTAG 59.937 40.741 10.86 0.00 35.13 1.85
2864 3226 6.945218 TGGTTTGCTTCCAATATTTGCTATT 58.055 32.000 0.00 0.00 31.50 1.73
2867 3229 5.789643 TGCTTCCAATATTTGCTATTCCC 57.210 39.130 0.00 0.00 0.00 3.97
2868 3230 5.457686 TGCTTCCAATATTTGCTATTCCCT 58.542 37.500 0.00 0.00 0.00 4.20
2869 3231 5.536161 TGCTTCCAATATTTGCTATTCCCTC 59.464 40.000 0.00 0.00 0.00 4.30
2870 3232 5.047731 GCTTCCAATATTTGCTATTCCCTCC 60.048 44.000 0.00 0.00 0.00 4.30
2871 3233 4.651778 TCCAATATTTGCTATTCCCTCCG 58.348 43.478 0.00 0.00 0.00 4.63
2872 3234 4.104102 TCCAATATTTGCTATTCCCTCCGT 59.896 41.667 0.00 0.00 0.00 4.69
2873 3235 4.455877 CCAATATTTGCTATTCCCTCCGTC 59.544 45.833 0.00 0.00 0.00 4.79
2874 3236 2.640316 ATTTGCTATTCCCTCCGTCC 57.360 50.000 0.00 0.00 0.00 4.79
2875 3237 1.580059 TTTGCTATTCCCTCCGTCCT 58.420 50.000 0.00 0.00 0.00 3.85
2876 3238 2.464796 TTGCTATTCCCTCCGTCCTA 57.535 50.000 0.00 0.00 0.00 2.94
2877 3239 2.464796 TGCTATTCCCTCCGTCCTAA 57.535 50.000 0.00 0.00 0.00 2.69
2878 3240 2.754465 TGCTATTCCCTCCGTCCTAAA 58.246 47.619 0.00 0.00 0.00 1.85
2879 3241 3.109151 TGCTATTCCCTCCGTCCTAAAA 58.891 45.455 0.00 0.00 0.00 1.52
2880 3242 3.714798 TGCTATTCCCTCCGTCCTAAAAT 59.285 43.478 0.00 0.00 0.00 1.82
2881 3243 4.903049 TGCTATTCCCTCCGTCCTAAAATA 59.097 41.667 0.00 0.00 0.00 1.40
2882 3244 5.367352 TGCTATTCCCTCCGTCCTAAAATAA 59.633 40.000 0.00 0.00 0.00 1.40
2883 3245 6.126710 TGCTATTCCCTCCGTCCTAAAATAAA 60.127 38.462 0.00 0.00 0.00 1.40
2884 3246 6.940867 GCTATTCCCTCCGTCCTAAAATAAAT 59.059 38.462 0.00 0.00 0.00 1.40
2885 3247 7.094762 GCTATTCCCTCCGTCCTAAAATAAATG 60.095 40.741 0.00 0.00 0.00 2.32
2886 3248 5.703730 TCCCTCCGTCCTAAAATAAATGT 57.296 39.130 0.00 0.00 0.00 2.71
2887 3249 5.677567 TCCCTCCGTCCTAAAATAAATGTC 58.322 41.667 0.00 0.00 0.00 3.06
2888 3250 4.510340 CCCTCCGTCCTAAAATAAATGTCG 59.490 45.833 0.00 0.00 0.00 4.35
2889 3251 4.025145 CCTCCGTCCTAAAATAAATGTCGC 60.025 45.833 0.00 0.00 0.00 5.19
2890 3252 4.761975 TCCGTCCTAAAATAAATGTCGCT 58.238 39.130 0.00 0.00 0.00 4.93
2891 3253 4.569162 TCCGTCCTAAAATAAATGTCGCTG 59.431 41.667 0.00 0.00 0.00 5.18
2892 3254 4.569162 CCGTCCTAAAATAAATGTCGCTGA 59.431 41.667 0.00 0.00 0.00 4.26
2893 3255 5.236478 CCGTCCTAAAATAAATGTCGCTGAT 59.764 40.000 0.00 0.00 0.00 2.90
2894 3256 6.238374 CCGTCCTAAAATAAATGTCGCTGATT 60.238 38.462 0.00 0.00 0.00 2.57
2895 3257 7.186804 CGTCCTAAAATAAATGTCGCTGATTT 58.813 34.615 0.00 0.00 0.00 2.17
2896 3258 8.332464 CGTCCTAAAATAAATGTCGCTGATTTA 58.668 33.333 0.00 0.00 31.50 1.40
2897 3259 9.651718 GTCCTAAAATAAATGTCGCTGATTTAG 57.348 33.333 0.00 0.00 30.69 1.85
2898 3260 9.391006 TCCTAAAATAAATGTCGCTGATTTAGT 57.609 29.630 0.00 0.00 30.69 2.24
2903 3265 9.769093 AAATAAATGTCGCTGATTTAGTACAAC 57.231 29.630 0.00 0.00 30.69 3.32
2904 3266 8.718102 ATAAATGTCGCTGATTTAGTACAACT 57.282 30.769 0.00 0.00 30.69 3.16
2905 3267 6.648725 AATGTCGCTGATTTAGTACAACTC 57.351 37.500 0.00 0.00 31.32 3.01
2906 3268 5.386958 TGTCGCTGATTTAGTACAACTCT 57.613 39.130 0.00 0.00 0.00 3.24
2907 3269 5.161358 TGTCGCTGATTTAGTACAACTCTG 58.839 41.667 0.00 0.00 0.00 3.35
2908 3270 5.048294 TGTCGCTGATTTAGTACAACTCTGA 60.048 40.000 0.00 0.00 0.00 3.27
2909 3271 6.037098 GTCGCTGATTTAGTACAACTCTGAT 58.963 40.000 0.00 0.00 0.00 2.90
2910 3272 6.531948 GTCGCTGATTTAGTACAACTCTGATT 59.468 38.462 0.00 0.00 0.00 2.57
2911 3273 7.063544 GTCGCTGATTTAGTACAACTCTGATTT 59.936 37.037 0.00 0.00 0.00 2.17
2912 3274 8.248253 TCGCTGATTTAGTACAACTCTGATTTA 58.752 33.333 0.00 0.00 0.00 1.40
2913 3275 8.535592 CGCTGATTTAGTACAACTCTGATTTAG 58.464 37.037 0.00 0.00 0.00 1.85
2914 3276 9.372369 GCTGATTTAGTACAACTCTGATTTAGT 57.628 33.333 0.00 0.00 0.00 2.24
2938 3300 9.946165 AGTACAAAGTTTTACTAAATCAGCAAC 57.054 29.630 0.00 0.00 0.00 4.17
2939 3301 9.724839 GTACAAAGTTTTACTAAATCAGCAACA 57.275 29.630 0.00 0.00 0.00 3.33
2940 3302 8.628882 ACAAAGTTTTACTAAATCAGCAACAC 57.371 30.769 0.00 0.00 0.00 3.32
2941 3303 7.431084 ACAAAGTTTTACTAAATCAGCAACACG 59.569 33.333 0.00 0.00 0.00 4.49
2942 3304 5.997385 AGTTTTACTAAATCAGCAACACGG 58.003 37.500 0.00 0.00 0.00 4.94
2943 3305 5.048991 AGTTTTACTAAATCAGCAACACGGG 60.049 40.000 0.00 0.00 0.00 5.28
2944 3306 2.561478 ACTAAATCAGCAACACGGGT 57.439 45.000 0.00 0.00 0.00 5.28
2945 3307 2.858745 ACTAAATCAGCAACACGGGTT 58.141 42.857 0.00 0.00 37.87 4.11
2946 3308 3.219281 ACTAAATCAGCAACACGGGTTT 58.781 40.909 0.00 0.00 34.21 3.27
2947 3309 3.634910 ACTAAATCAGCAACACGGGTTTT 59.365 39.130 0.00 0.00 34.21 2.43
2948 3310 2.507339 AATCAGCAACACGGGTTTTG 57.493 45.000 0.00 2.46 34.21 2.44
2949 3311 0.673437 ATCAGCAACACGGGTTTTGG 59.327 50.000 0.00 0.00 34.21 3.28
2950 3312 1.067250 CAGCAACACGGGTTTTGGG 59.933 57.895 0.00 0.00 34.21 4.12
2951 3313 1.076632 AGCAACACGGGTTTTGGGA 60.077 52.632 0.00 0.00 34.21 4.37
2952 3314 0.469144 AGCAACACGGGTTTTGGGAT 60.469 50.000 0.00 0.00 34.21 3.85
2953 3315 0.319469 GCAACACGGGTTTTGGGATG 60.319 55.000 0.00 0.00 34.21 3.51
2954 3316 0.316841 CAACACGGGTTTTGGGATGG 59.683 55.000 0.00 0.00 34.21 3.51
2955 3317 0.186386 AACACGGGTTTTGGGATGGA 59.814 50.000 0.00 0.00 31.83 3.41
2956 3318 0.538746 ACACGGGTTTTGGGATGGAC 60.539 55.000 0.00 0.00 0.00 4.02
2957 3319 1.302993 ACGGGTTTTGGGATGGACG 60.303 57.895 0.00 0.00 0.00 4.79
2958 3320 2.043980 CGGGTTTTGGGATGGACGG 61.044 63.158 0.00 0.00 0.00 4.79
2959 3321 1.381076 GGGTTTTGGGATGGACGGA 59.619 57.895 0.00 0.00 0.00 4.69
2960 3322 0.679960 GGGTTTTGGGATGGACGGAG 60.680 60.000 0.00 0.00 0.00 4.63
2978 3340 6.359480 ACGGAGTATTTGCTATGCTAAAAC 57.641 37.500 0.00 0.00 41.94 2.43
2979 3341 5.878116 ACGGAGTATTTGCTATGCTAAAACA 59.122 36.000 0.00 0.00 41.94 2.83
2980 3342 6.542370 ACGGAGTATTTGCTATGCTAAAACAT 59.458 34.615 0.00 0.00 41.94 2.71
2981 3343 6.852853 CGGAGTATTTGCTATGCTAAAACATG 59.147 38.462 0.00 0.00 0.00 3.21
2982 3344 7.141363 GGAGTATTTGCTATGCTAAAACATGG 58.859 38.462 0.00 0.00 0.00 3.66
2983 3345 7.013274 GGAGTATTTGCTATGCTAAAACATGGA 59.987 37.037 0.00 0.00 30.59 3.41
2984 3346 7.707104 AGTATTTGCTATGCTAAAACATGGAC 58.293 34.615 0.00 0.00 30.59 4.02
2985 3347 5.973899 TTTGCTATGCTAAAACATGGACA 57.026 34.783 0.00 0.00 30.59 4.02
2986 3348 5.565592 TTGCTATGCTAAAACATGGACAG 57.434 39.130 0.00 0.00 30.59 3.51
2987 3349 3.947196 TGCTATGCTAAAACATGGACAGG 59.053 43.478 0.00 0.00 30.59 4.00
2988 3350 3.243201 GCTATGCTAAAACATGGACAGGC 60.243 47.826 0.00 0.00 30.59 4.85
2989 3351 1.544724 TGCTAAAACATGGACAGGCC 58.455 50.000 0.00 0.00 37.10 5.19
2999 3361 2.906691 TGGACAGGCCAAACAAATTG 57.093 45.000 5.01 0.00 45.87 2.32
3019 3381 4.846779 TGGTGCTCAATTGTTTTACTCC 57.153 40.909 5.13 3.38 0.00 3.85
3020 3382 4.469657 TGGTGCTCAATTGTTTTACTCCT 58.530 39.130 5.13 0.00 0.00 3.69
3021 3383 5.626142 TGGTGCTCAATTGTTTTACTCCTA 58.374 37.500 5.13 0.00 0.00 2.94
3022 3384 6.065374 TGGTGCTCAATTGTTTTACTCCTAA 58.935 36.000 5.13 0.00 0.00 2.69
3023 3385 6.016610 TGGTGCTCAATTGTTTTACTCCTAAC 60.017 38.462 5.13 0.00 0.00 2.34
3024 3386 6.016610 GGTGCTCAATTGTTTTACTCCTAACA 60.017 38.462 5.13 0.00 32.76 2.41
3025 3387 7.309194 GGTGCTCAATTGTTTTACTCCTAACAT 60.309 37.037 5.13 0.00 34.52 2.71
3026 3388 8.082242 GTGCTCAATTGTTTTACTCCTAACATT 58.918 33.333 5.13 0.00 34.52 2.71
3027 3389 8.637986 TGCTCAATTGTTTTACTCCTAACATTT 58.362 29.630 5.13 0.00 34.52 2.32
3028 3390 9.476202 GCTCAATTGTTTTACTCCTAACATTTT 57.524 29.630 5.13 0.00 34.52 1.82
3034 3396 9.906660 TTGTTTTACTCCTAACATTTTAGCATG 57.093 29.630 0.00 0.00 34.52 4.06
3035 3397 8.026607 TGTTTTACTCCTAACATTTTAGCATGC 58.973 33.333 10.51 10.51 34.36 4.06
3036 3398 6.693315 TTACTCCTAACATTTTAGCATGCC 57.307 37.500 15.66 0.00 34.36 4.40
3037 3399 3.954258 ACTCCTAACATTTTAGCATGCCC 59.046 43.478 15.66 0.00 34.36 5.36
3038 3400 3.953612 CTCCTAACATTTTAGCATGCCCA 59.046 43.478 15.66 0.00 34.36 5.36
3039 3401 3.699038 TCCTAACATTTTAGCATGCCCAC 59.301 43.478 15.66 0.00 34.36 4.61
3040 3402 3.446873 CCTAACATTTTAGCATGCCCACA 59.553 43.478 15.66 0.00 34.36 4.17
3041 3403 3.317603 AACATTTTAGCATGCCCACAC 57.682 42.857 15.66 0.00 0.00 3.82
3042 3404 1.550072 ACATTTTAGCATGCCCACACC 59.450 47.619 15.66 0.00 0.00 4.16
3043 3405 1.826720 CATTTTAGCATGCCCACACCT 59.173 47.619 15.66 0.00 0.00 4.00
3044 3406 2.008242 TTTTAGCATGCCCACACCTT 57.992 45.000 15.66 0.00 0.00 3.50
3045 3407 2.889170 TTTAGCATGCCCACACCTTA 57.111 45.000 15.66 0.00 0.00 2.69
3046 3408 3.380471 TTTAGCATGCCCACACCTTAT 57.620 42.857 15.66 0.00 0.00 1.73
3047 3409 2.638480 TAGCATGCCCACACCTTATC 57.362 50.000 15.66 0.00 0.00 1.75
3048 3410 0.921896 AGCATGCCCACACCTTATCT 59.078 50.000 15.66 0.00 0.00 1.98
3049 3411 1.285962 AGCATGCCCACACCTTATCTT 59.714 47.619 15.66 0.00 0.00 2.40
3050 3412 1.406539 GCATGCCCACACCTTATCTTG 59.593 52.381 6.36 0.00 0.00 3.02
3051 3413 2.026641 CATGCCCACACCTTATCTTGG 58.973 52.381 0.00 0.00 0.00 3.61
3052 3414 0.323360 TGCCCACACCTTATCTTGGC 60.323 55.000 0.00 0.00 37.90 4.52
3053 3415 0.323360 GCCCACACCTTATCTTGGCA 60.323 55.000 0.00 0.00 37.36 4.92
3054 3416 1.755179 CCCACACCTTATCTTGGCAG 58.245 55.000 0.00 0.00 0.00 4.85
3055 3417 1.281867 CCCACACCTTATCTTGGCAGA 59.718 52.381 0.00 0.00 0.00 4.26
3056 3418 2.290896 CCCACACCTTATCTTGGCAGAA 60.291 50.000 0.00 0.00 30.76 3.02
3057 3419 3.624777 CCACACCTTATCTTGGCAGAAT 58.375 45.455 0.00 0.00 30.76 2.40
3058 3420 4.385199 CCCACACCTTATCTTGGCAGAATA 60.385 45.833 0.00 0.00 30.76 1.75
3059 3421 4.818546 CCACACCTTATCTTGGCAGAATAG 59.181 45.833 0.00 0.00 30.76 1.73
3060 3422 4.274459 CACACCTTATCTTGGCAGAATAGC 59.726 45.833 0.00 0.00 30.76 2.97
3061 3423 4.164988 ACACCTTATCTTGGCAGAATAGCT 59.835 41.667 0.00 0.00 30.76 3.32
3063 3425 4.070716 CCTTATCTTGGCAGAATAGCTGG 58.929 47.826 0.00 0.00 45.03 4.85
3064 3426 4.202398 CCTTATCTTGGCAGAATAGCTGGA 60.202 45.833 0.00 0.00 45.03 3.86
3065 3427 5.514484 CCTTATCTTGGCAGAATAGCTGGAT 60.514 44.000 0.00 0.00 45.03 3.41
3066 3428 6.296087 CCTTATCTTGGCAGAATAGCTGGATA 60.296 42.308 0.00 0.00 45.03 2.59
3067 3429 4.613925 TCTTGGCAGAATAGCTGGATAG 57.386 45.455 0.00 0.00 45.03 2.08
3068 3430 3.326006 TCTTGGCAGAATAGCTGGATAGG 59.674 47.826 0.00 0.00 45.03 2.57
3069 3431 2.694397 TGGCAGAATAGCTGGATAGGT 58.306 47.619 0.00 0.00 45.03 3.08
3070 3432 2.634940 TGGCAGAATAGCTGGATAGGTC 59.365 50.000 0.00 0.00 45.03 3.85
3071 3433 2.903135 GGCAGAATAGCTGGATAGGTCT 59.097 50.000 0.00 0.00 45.03 3.85
3072 3434 3.326297 GGCAGAATAGCTGGATAGGTCTT 59.674 47.826 0.00 0.00 45.03 3.01
3073 3435 4.528596 GGCAGAATAGCTGGATAGGTCTTA 59.471 45.833 0.00 0.00 45.03 2.10
3074 3436 5.474825 GCAGAATAGCTGGATAGGTCTTAC 58.525 45.833 0.00 0.00 45.03 2.34
3075 3437 5.704888 CAGAATAGCTGGATAGGTCTTACG 58.295 45.833 0.00 0.00 41.07 3.18
3148 3510 3.851976 ACCACTTTACGTTTTTGTGCA 57.148 38.095 0.00 0.00 0.00 4.57
3496 3864 3.682718 CGGTAGAAGTTGAGGATGCCATT 60.683 47.826 0.00 0.00 0.00 3.16
3969 4409 7.176515 TGAAACTTGAAAGTGCCATACATATGT 59.823 33.333 13.93 13.93 39.66 2.29
4909 5437 4.697352 GGAATGTCATGCATGATAGGTACC 59.303 45.833 30.89 22.73 39.30 3.34
5094 7839 8.985315 AAGAATGTTTTATCTATGATGAGGCA 57.015 30.769 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.333115 TTGTATGTTCGTCGACAGCG 58.667 50.000 17.16 1.38 39.35 5.18
3 4 2.666508 CCCTTTGTATGTTCGTCGACAG 59.333 50.000 17.16 8.67 32.19 3.51
4 5 2.036217 ACCCTTTGTATGTTCGTCGACA 59.964 45.455 17.16 0.00 0.00 4.35
5 6 2.665052 GACCCTTTGTATGTTCGTCGAC 59.335 50.000 5.18 5.18 0.00 4.20
6 7 2.296752 TGACCCTTTGTATGTTCGTCGA 59.703 45.455 0.00 0.00 0.00 4.20
7 8 2.666508 CTGACCCTTTGTATGTTCGTCG 59.333 50.000 0.00 0.00 0.00 5.12
8 9 3.678548 GTCTGACCCTTTGTATGTTCGTC 59.321 47.826 0.00 0.00 0.00 4.20
9 10 3.323979 AGTCTGACCCTTTGTATGTTCGT 59.676 43.478 3.76 0.00 0.00 3.85
10 11 3.926616 AGTCTGACCCTTTGTATGTTCG 58.073 45.455 3.76 0.00 0.00 3.95
11 12 5.063880 ACAAGTCTGACCCTTTGTATGTTC 58.936 41.667 10.95 0.00 32.41 3.18
12 13 5.048846 ACAAGTCTGACCCTTTGTATGTT 57.951 39.130 10.95 0.00 32.41 2.71
13 14 4.706842 ACAAGTCTGACCCTTTGTATGT 57.293 40.909 10.95 0.19 32.41 2.29
14 15 5.547465 TGTACAAGTCTGACCCTTTGTATG 58.453 41.667 18.24 4.56 38.04 2.39
15 16 5.818678 TGTACAAGTCTGACCCTTTGTAT 57.181 39.130 18.24 2.24 38.04 2.29
16 17 5.818678 ATGTACAAGTCTGACCCTTTGTA 57.181 39.130 13.79 13.79 35.55 2.41
17 18 4.706842 ATGTACAAGTCTGACCCTTTGT 57.293 40.909 15.35 15.35 37.51 2.83
18 19 5.063204 TCAATGTACAAGTCTGACCCTTTG 58.937 41.667 0.00 5.52 0.00 2.77
19 20 5.304686 TCAATGTACAAGTCTGACCCTTT 57.695 39.130 0.00 0.00 0.00 3.11
20 21 4.974645 TCAATGTACAAGTCTGACCCTT 57.025 40.909 0.00 0.00 0.00 3.95
21 22 4.836825 CATCAATGTACAAGTCTGACCCT 58.163 43.478 0.00 0.00 0.00 4.34
22 23 3.375299 GCATCAATGTACAAGTCTGACCC 59.625 47.826 0.00 0.00 0.00 4.46
23 24 4.256920 AGCATCAATGTACAAGTCTGACC 58.743 43.478 0.00 0.00 0.00 4.02
24 25 5.174395 AGAGCATCAATGTACAAGTCTGAC 58.826 41.667 0.00 0.00 37.82 3.51
25 26 5.411831 AGAGCATCAATGTACAAGTCTGA 57.588 39.130 0.00 1.16 37.82 3.27
26 27 6.238049 GCTTAGAGCATCAATGTACAAGTCTG 60.238 42.308 0.00 0.00 41.89 3.51
27 28 5.814705 GCTTAGAGCATCAATGTACAAGTCT 59.185 40.000 0.00 0.00 41.89 3.24
28 29 5.814705 AGCTTAGAGCATCAATGTACAAGTC 59.185 40.000 0.00 0.00 45.56 3.01
29 30 5.738909 AGCTTAGAGCATCAATGTACAAGT 58.261 37.500 0.00 0.00 45.56 3.16
30 31 6.484540 CAAGCTTAGAGCATCAATGTACAAG 58.515 40.000 0.00 0.00 45.56 3.16
31 32 5.163723 GCAAGCTTAGAGCATCAATGTACAA 60.164 40.000 0.00 0.00 45.56 2.41
32 33 4.333649 GCAAGCTTAGAGCATCAATGTACA 59.666 41.667 0.00 0.00 45.56 2.90
33 34 4.333649 TGCAAGCTTAGAGCATCAATGTAC 59.666 41.667 5.88 0.00 45.56 2.90
34 35 4.333649 GTGCAAGCTTAGAGCATCAATGTA 59.666 41.667 12.49 0.00 45.56 2.29
35 36 3.128242 GTGCAAGCTTAGAGCATCAATGT 59.872 43.478 12.49 0.00 45.56 2.71
36 37 3.128068 TGTGCAAGCTTAGAGCATCAATG 59.872 43.478 12.49 0.00 45.56 2.82
37 38 3.128242 GTGTGCAAGCTTAGAGCATCAAT 59.872 43.478 12.49 0.00 45.56 2.57
38 39 2.485426 GTGTGCAAGCTTAGAGCATCAA 59.515 45.455 12.49 0.89 45.56 2.57
39 40 2.079158 GTGTGCAAGCTTAGAGCATCA 58.921 47.619 12.49 9.77 45.56 3.07
40 41 2.079158 TGTGTGCAAGCTTAGAGCATC 58.921 47.619 12.49 9.74 45.56 3.91
41 42 1.808945 GTGTGTGCAAGCTTAGAGCAT 59.191 47.619 12.49 0.00 45.56 3.79
42 43 1.202687 AGTGTGTGCAAGCTTAGAGCA 60.203 47.619 5.88 5.88 45.56 4.26
43 44 1.517242 AGTGTGTGCAAGCTTAGAGC 58.483 50.000 0.00 0.00 42.84 4.09
44 45 3.851105 GCAAAGTGTGTGCAAGCTTAGAG 60.851 47.826 0.00 0.00 41.80 2.43
45 46 2.033299 GCAAAGTGTGTGCAAGCTTAGA 59.967 45.455 0.00 0.00 41.80 2.10
46 47 2.388121 GCAAAGTGTGTGCAAGCTTAG 58.612 47.619 0.00 0.00 41.80 2.18
47 48 2.490328 GCAAAGTGTGTGCAAGCTTA 57.510 45.000 0.00 0.00 41.80 3.09
48 49 3.350766 GCAAAGTGTGTGCAAGCTT 57.649 47.368 0.00 0.00 41.80 3.74
54 55 1.940758 CACGCTGCAAAGTGTGTGC 60.941 57.895 10.60 0.00 43.14 4.57
55 56 4.290326 CACGCTGCAAAGTGTGTG 57.710 55.556 10.60 7.14 43.14 3.82
78 79 8.590470 CATGCAATAAAGTAGAGCATACTATCG 58.410 37.037 0.00 0.00 43.43 2.92
88 89 5.841957 AAAGGGCATGCAATAAAGTAGAG 57.158 39.130 21.36 0.00 0.00 2.43
117 121 3.642848 AGCCAAGGCCATGTAATATTTGG 59.357 43.478 5.01 7.96 43.17 3.28
143 147 6.584563 TGAACCTTGCTCGTTTTAATATTTGC 59.415 34.615 0.00 0.00 0.00 3.68
219 223 4.284234 TCGAAGGGAATGATATGAGCATGA 59.716 41.667 0.00 0.00 0.00 3.07
280 284 3.362797 CTGCTGCTGGTGCTGGTG 61.363 66.667 0.00 0.00 40.48 4.17
281 285 3.882326 ACTGCTGCTGGTGCTGGT 61.882 61.111 11.29 0.00 40.48 4.00
282 286 3.362797 CACTGCTGCTGGTGCTGG 61.363 66.667 11.29 0.00 40.48 4.85
283 287 1.449726 TTTCACTGCTGCTGGTGCTG 61.450 55.000 16.94 5.34 40.48 4.41
284 288 0.538977 ATTTCACTGCTGCTGGTGCT 60.539 50.000 16.94 6.04 40.48 4.40
285 289 0.388134 CATTTCACTGCTGCTGGTGC 60.388 55.000 16.94 0.00 40.20 5.01
315 336 2.224549 CACACCGGAGCAAAAACGATAA 59.775 45.455 9.46 0.00 0.00 1.75
383 404 0.466189 CTGTGGTGGGCTCAACAGTT 60.466 55.000 3.32 0.00 41.90 3.16
442 463 3.142174 AGAAGGAACGCAAGGAAGAAAG 58.858 45.455 0.00 0.00 46.39 2.62
443 464 3.139077 GAGAAGGAACGCAAGGAAGAAA 58.861 45.455 0.00 0.00 46.39 2.52
501 531 0.036010 AGATCCACCGTGGCTTTCTG 60.036 55.000 13.19 0.00 37.47 3.02
511 541 2.415010 CAGAGGCGAGATCCACCG 59.585 66.667 0.00 0.00 0.00 4.94
553 583 0.036164 AACATGTGACCGCTGGCTAA 59.964 50.000 0.00 0.00 0.00 3.09
612 651 9.955102 AGGTTACAGTTAGGGTTTAGAAATTAG 57.045 33.333 0.00 0.00 0.00 1.73
657 702 8.824159 TCACTTCAAGTTTATTCTTCTCTCTG 57.176 34.615 0.00 0.00 0.00 3.35
693 738 0.741915 CCTTCTCTCCTGTAGTCCGC 59.258 60.000 0.00 0.00 0.00 5.54
755 800 4.105486 GCGAACTAAAGCAAATGATTCCC 58.895 43.478 0.00 0.00 0.00 3.97
929 974 5.881923 ACTACCTCAGTGTAAAACAAGGA 57.118 39.130 3.82 0.00 37.40 3.36
1057 1111 3.918253 GAACGGGGATGGTGCAGCA 62.918 63.158 22.56 22.56 0.00 4.41
1064 1118 1.095228 CAACGATGGAACGGGGATGG 61.095 60.000 0.00 0.00 37.61 3.51
1084 1138 2.867624 TGCAAGAGCTTTGATTGGAGT 58.132 42.857 11.34 0.00 42.74 3.85
1092 1147 1.201647 CACCCAGATGCAAGAGCTTTG 59.798 52.381 0.00 0.00 42.74 2.77
1104 1160 1.377725 CTTGCGCTTCCACCCAGAT 60.378 57.895 9.73 0.00 0.00 2.90
1106 1162 3.058160 CCTTGCGCTTCCACCCAG 61.058 66.667 9.73 0.00 0.00 4.45
1115 1171 4.421515 ATGGCTGCTCCTTGCGCT 62.422 61.111 9.73 0.00 46.63 5.92
1117 1173 3.515286 CCATGGCTGCTCCTTGCG 61.515 66.667 0.00 0.00 46.63 4.85
1123 1179 3.145551 CTTGGGCCATGGCTGCTC 61.146 66.667 34.70 18.77 41.60 4.26
1182 1238 3.148279 GGCCTCATCTCCGACGGT 61.148 66.667 14.79 0.00 0.00 4.83
1386 1448 0.889186 GGGTGGTGAAGTTGATGCGT 60.889 55.000 0.00 0.00 0.00 5.24
1387 1449 0.606401 AGGGTGGTGAAGTTGATGCG 60.606 55.000 0.00 0.00 0.00 4.73
1388 1450 2.489938 TAGGGTGGTGAAGTTGATGC 57.510 50.000 0.00 0.00 0.00 3.91
1389 1451 5.982890 AATTTAGGGTGGTGAAGTTGATG 57.017 39.130 0.00 0.00 0.00 3.07
1390 1452 6.994421 AAAATTTAGGGTGGTGAAGTTGAT 57.006 33.333 0.00 0.00 0.00 2.57
1391 1453 6.800072 AAAAATTTAGGGTGGTGAAGTTGA 57.200 33.333 0.00 0.00 0.00 3.18
1412 1474 8.830580 CGGATCTCTGAGCTTTTATATCAAAAA 58.169 33.333 0.00 0.00 0.00 1.94
1419 1481 4.893524 TGACCGGATCTCTGAGCTTTTATA 59.106 41.667 9.46 0.00 0.00 0.98
1420 1482 3.706594 TGACCGGATCTCTGAGCTTTTAT 59.293 43.478 9.46 0.00 0.00 1.40
1421 1483 3.096852 TGACCGGATCTCTGAGCTTTTA 58.903 45.455 9.46 0.00 0.00 1.52
1425 1487 2.158534 ACTATGACCGGATCTCTGAGCT 60.159 50.000 9.46 0.00 0.00 4.09
1426 1488 2.235016 ACTATGACCGGATCTCTGAGC 58.765 52.381 9.46 0.00 0.00 4.26
1427 1489 4.457603 CCTAACTATGACCGGATCTCTGAG 59.542 50.000 9.46 0.00 0.00 3.35
1428 1490 4.399219 CCTAACTATGACCGGATCTCTGA 58.601 47.826 9.46 0.00 0.00 3.27
1429 1491 3.057174 GCCTAACTATGACCGGATCTCTG 60.057 52.174 9.46 0.00 0.00 3.35
1430 1492 3.158676 GCCTAACTATGACCGGATCTCT 58.841 50.000 9.46 0.00 0.00 3.10
1431 1493 3.158676 AGCCTAACTATGACCGGATCTC 58.841 50.000 9.46 0.00 0.00 2.75
1438 1500 4.156373 GGATCTCGTAGCCTAACTATGACC 59.844 50.000 0.00 0.00 41.13 4.02
1472 1534 4.037446 TGCAGGTCAAGTTCGCTTATTTTT 59.963 37.500 0.00 0.00 35.31 1.94
1479 1541 1.302033 CCTGCAGGTCAAGTTCGCT 60.302 57.895 25.53 0.00 0.00 4.93
1711 2014 1.012841 CTTCTTCTCGGGAGCATTGC 58.987 55.000 0.00 0.00 0.00 3.56
1823 2126 1.078285 TGGCTCGATGCTTGCATGA 60.078 52.632 13.18 9.52 42.39 3.07
1824 2127 1.063649 GTGGCTCGATGCTTGCATG 59.936 57.895 13.18 5.87 42.39 4.06
1881 2184 7.473511 GCTCTGTATGTGTTTATCCCTTCCTAT 60.474 40.741 0.00 0.00 0.00 2.57
1898 2201 8.932945 ATATACGTTCCATTATGCTCTGTATG 57.067 34.615 0.00 0.00 0.00 2.39
1917 2220 4.693283 TGCCCTTCTTTCACAGATATACG 58.307 43.478 0.00 0.00 0.00 3.06
1932 2236 3.953612 TCAACCATGATGTATTGCCCTTC 59.046 43.478 0.00 0.00 0.00 3.46
1940 2244 5.010314 GCCATCAATGTCAACCATGATGTAT 59.990 40.000 17.09 0.00 37.37 2.29
1949 2253 0.174162 GCTGGCCATCAATGTCAACC 59.826 55.000 5.51 0.00 0.00 3.77
1953 2257 0.387929 CCATGCTGGCCATCAATGTC 59.612 55.000 14.28 0.00 29.71 3.06
1968 2275 2.628696 TTGTCTTGCCGCTGCCATG 61.629 57.895 0.00 0.00 36.33 3.66
2013 2320 3.377485 CGAGAGTAGTCTTTGAATCGGGA 59.623 47.826 0.56 0.00 30.97 5.14
2054 2361 0.179189 CCTGCAAGCGAAAATCGTCC 60.179 55.000 1.45 0.00 42.81 4.79
2056 2363 0.517316 GTCCTGCAAGCGAAAATCGT 59.483 50.000 1.45 0.00 42.81 3.73
2057 2364 0.516877 TGTCCTGCAAGCGAAAATCG 59.483 50.000 0.00 0.00 43.89 3.34
2058 2365 2.523015 CATGTCCTGCAAGCGAAAATC 58.477 47.619 0.00 0.00 0.00 2.17
2075 2382 6.016777 GCTGAGAAATTATGTACTTCCCCATG 60.017 42.308 0.00 0.00 0.00 3.66
2086 2393 4.521146 CCCTGACAGCTGAGAAATTATGT 58.479 43.478 23.35 0.00 0.00 2.29
2100 2407 3.493350 CCGTTGATATCTTCCCCTGACAG 60.493 52.174 3.98 0.00 0.00 3.51
2114 2421 5.123186 GTCATCATTTGAACCACCGTTGATA 59.877 40.000 0.00 0.00 35.70 2.15
2153 2460 1.344763 AGTAGCTGGTGAAGTCGCTTT 59.655 47.619 0.00 0.00 34.14 3.51
2159 2466 5.163499 GCTAGTATCAAGTAGCTGGTGAAGT 60.163 44.000 0.00 0.00 46.84 3.01
2179 2486 7.907214 AAGACAACAAGTACCTTAATGCTAG 57.093 36.000 0.00 0.00 0.00 3.42
2183 2490 8.883731 CCATCTAAGACAACAAGTACCTTAATG 58.116 37.037 0.00 0.00 0.00 1.90
2240 2547 5.741011 TCACTTAACATACCATCCAACTCC 58.259 41.667 0.00 0.00 0.00 3.85
2249 2556 3.911260 TGTCCCCTTCACTTAACATACCA 59.089 43.478 0.00 0.00 0.00 3.25
2261 2568 2.496070 CTCACTACGATTGTCCCCTTCA 59.504 50.000 0.00 0.00 0.00 3.02
2285 2592 0.373716 CGCCCGTTGTTAGCAAGATC 59.626 55.000 0.00 0.00 34.94 2.75
2292 2599 0.798159 GGTAAACCGCCCGTTGTTAG 59.202 55.000 0.00 0.00 33.93 2.34
2307 2614 5.063691 CCTCAAATACATTACAACGCGGTAA 59.936 40.000 12.47 10.86 37.62 2.85
2308 2615 4.567558 CCTCAAATACATTACAACGCGGTA 59.432 41.667 12.47 0.07 0.00 4.02
2311 2618 4.850859 TCCTCAAATACATTACAACGCG 57.149 40.909 3.53 3.53 0.00 6.01
2312 2619 6.551736 ACATTCCTCAAATACATTACAACGC 58.448 36.000 0.00 0.00 0.00 4.84
2319 2626 9.537192 CAATGCATTACATTCCTCAAATACATT 57.463 29.630 12.53 0.00 46.28 2.71
2320 2627 8.916062 TCAATGCATTACATTCCTCAAATACAT 58.084 29.630 12.53 0.00 46.28 2.29
2328 2680 6.261603 TCATCACTCAATGCATTACATTCCTC 59.738 38.462 12.53 0.00 46.28 3.71
2331 2683 6.788243 TGTCATCACTCAATGCATTACATTC 58.212 36.000 12.53 0.00 46.28 2.67
2333 2685 6.320418 ACATGTCATCACTCAATGCATTACAT 59.680 34.615 12.53 12.39 42.30 2.29
2338 2690 3.181490 GCACATGTCATCACTCAATGCAT 60.181 43.478 0.00 0.00 33.18 3.96
2522 2876 7.155328 CCCATATATCACTGTTCAGTACTTCC 58.845 42.308 5.11 0.00 0.00 3.46
2558 2912 1.271856 TGAGGAATGGCTTACGGACA 58.728 50.000 0.00 0.00 37.36 4.02
2559 2913 2.213499 CATGAGGAATGGCTTACGGAC 58.787 52.381 0.00 0.00 32.10 4.79
2562 2916 2.355756 CCAACATGAGGAATGGCTTACG 59.644 50.000 0.00 0.00 40.94 3.18
2590 2944 4.377021 CCGTAAGCTCTGTGGCATATTAA 58.623 43.478 0.00 0.00 34.17 1.40
2593 2947 1.541233 GCCGTAAGCTCTGTGGCATAT 60.541 52.381 12.71 0.00 45.06 1.78
2600 2954 1.450312 GCATGGCCGTAAGCTCTGT 60.450 57.895 0.00 0.00 43.05 3.41
2602 2956 0.035056 AAAGCATGGCCGTAAGCTCT 60.035 50.000 10.06 0.00 43.05 4.09
2614 2968 4.093408 ACATCGCACAGTAAGTAAAGCATG 59.907 41.667 0.00 0.00 0.00 4.06
2643 2997 7.890515 TCATCTTTAGCTATAGTCTGACCATG 58.109 38.462 10.51 5.97 0.00 3.66
2725 3079 2.936202 ACTGTTCACCAAGTTGCATCT 58.064 42.857 0.00 0.00 0.00 2.90
2729 3083 6.311935 TCGTAATATACTGTTCACCAAGTTGC 59.688 38.462 0.00 0.00 0.00 4.17
2762 3116 3.554934 TGTTTGAAGAAGTGACATGCCT 58.445 40.909 0.00 0.00 0.00 4.75
2793 3147 3.070446 AGTGTGGATTAACTCACCGACAA 59.930 43.478 7.33 0.00 33.29 3.18
2795 3149 3.314541 AGTGTGGATTAACTCACCGAC 57.685 47.619 7.33 1.77 33.29 4.79
2823 3184 8.045176 AGCAAACCAATTATGTCTAAGTCTTC 57.955 34.615 0.00 0.00 0.00 2.87
2864 3226 5.677567 GACATTTATTTTAGGACGGAGGGA 58.322 41.667 0.00 0.00 0.00 4.20
2867 3229 4.809426 AGCGACATTTATTTTAGGACGGAG 59.191 41.667 0.00 0.00 0.00 4.63
2868 3230 4.569162 CAGCGACATTTATTTTAGGACGGA 59.431 41.667 0.00 0.00 0.00 4.69
2869 3231 4.569162 TCAGCGACATTTATTTTAGGACGG 59.431 41.667 0.00 0.00 0.00 4.79
2870 3232 5.712217 TCAGCGACATTTATTTTAGGACG 57.288 39.130 0.00 0.00 0.00 4.79
2871 3233 9.651718 CTAAATCAGCGACATTTATTTTAGGAC 57.348 33.333 0.00 0.00 0.00 3.85
2872 3234 9.391006 ACTAAATCAGCGACATTTATTTTAGGA 57.609 29.630 0.00 0.00 0.00 2.94
2877 3239 9.769093 GTTGTACTAAATCAGCGACATTTATTT 57.231 29.630 0.00 0.00 0.00 1.40
2878 3240 9.162764 AGTTGTACTAAATCAGCGACATTTATT 57.837 29.630 0.00 0.00 0.00 1.40
2879 3241 8.718102 AGTTGTACTAAATCAGCGACATTTAT 57.282 30.769 0.00 0.00 0.00 1.40
2880 3242 8.033038 AGAGTTGTACTAAATCAGCGACATTTA 58.967 33.333 0.00 0.00 0.00 1.40
2881 3243 6.874134 AGAGTTGTACTAAATCAGCGACATTT 59.126 34.615 0.00 0.00 0.00 2.32
2882 3244 6.311445 CAGAGTTGTACTAAATCAGCGACATT 59.689 38.462 0.00 0.00 0.00 2.71
2883 3245 5.807520 CAGAGTTGTACTAAATCAGCGACAT 59.192 40.000 0.00 0.00 0.00 3.06
2884 3246 5.048294 TCAGAGTTGTACTAAATCAGCGACA 60.048 40.000 0.00 0.00 0.00 4.35
2885 3247 5.399858 TCAGAGTTGTACTAAATCAGCGAC 58.600 41.667 0.00 0.00 0.00 5.19
2886 3248 5.638596 TCAGAGTTGTACTAAATCAGCGA 57.361 39.130 0.00 0.00 0.00 4.93
2887 3249 6.893958 AATCAGAGTTGTACTAAATCAGCG 57.106 37.500 0.00 0.00 0.00 5.18
2888 3250 9.372369 ACTAAATCAGAGTTGTACTAAATCAGC 57.628 33.333 0.00 0.00 0.00 4.26
2912 3274 9.946165 GTTGCTGATTTAGTAAAACTTTGTACT 57.054 29.630 0.00 0.00 32.62 2.73
2913 3275 9.724839 TGTTGCTGATTTAGTAAAACTTTGTAC 57.275 29.630 0.00 0.00 32.62 2.90
2914 3276 9.724839 GTGTTGCTGATTTAGTAAAACTTTGTA 57.275 29.630 0.00 0.00 36.59 2.41
2915 3277 7.431084 CGTGTTGCTGATTTAGTAAAACTTTGT 59.569 33.333 0.00 0.00 37.16 2.83
2916 3278 7.096640 CCGTGTTGCTGATTTAGTAAAACTTTG 60.097 37.037 0.00 0.00 37.16 2.77
2917 3279 6.915843 CCGTGTTGCTGATTTAGTAAAACTTT 59.084 34.615 0.00 0.00 37.16 2.66
2918 3280 6.435428 CCGTGTTGCTGATTTAGTAAAACTT 58.565 36.000 0.00 0.00 37.16 2.66
2919 3281 5.048991 CCCGTGTTGCTGATTTAGTAAAACT 60.049 40.000 0.00 0.00 37.16 2.66
2920 3282 5.151389 CCCGTGTTGCTGATTTAGTAAAAC 58.849 41.667 0.00 0.00 36.28 2.43
2921 3283 4.822896 ACCCGTGTTGCTGATTTAGTAAAA 59.177 37.500 0.00 0.00 32.62 1.52
2922 3284 4.391155 ACCCGTGTTGCTGATTTAGTAAA 58.609 39.130 0.00 0.00 32.62 2.01
2923 3285 4.010667 ACCCGTGTTGCTGATTTAGTAA 57.989 40.909 0.00 0.00 0.00 2.24
2924 3286 3.688694 ACCCGTGTTGCTGATTTAGTA 57.311 42.857 0.00 0.00 0.00 1.82
2925 3287 2.561478 ACCCGTGTTGCTGATTTAGT 57.439 45.000 0.00 0.00 0.00 2.24
2926 3288 3.915437 AAACCCGTGTTGCTGATTTAG 57.085 42.857 0.00 0.00 34.13 1.85
2927 3289 3.243569 CCAAAACCCGTGTTGCTGATTTA 60.244 43.478 0.00 0.00 34.13 1.40
2928 3290 2.482839 CCAAAACCCGTGTTGCTGATTT 60.483 45.455 0.00 0.00 34.13 2.17
2929 3291 1.068434 CCAAAACCCGTGTTGCTGATT 59.932 47.619 0.00 0.00 34.13 2.57
2930 3292 0.673437 CCAAAACCCGTGTTGCTGAT 59.327 50.000 0.00 0.00 34.13 2.90
2931 3293 1.388065 CCCAAAACCCGTGTTGCTGA 61.388 55.000 0.00 0.00 34.13 4.26
2932 3294 1.067250 CCCAAAACCCGTGTTGCTG 59.933 57.895 0.00 0.00 34.13 4.41
2933 3295 0.469144 ATCCCAAAACCCGTGTTGCT 60.469 50.000 0.00 0.00 34.13 3.91
2934 3296 0.319469 CATCCCAAAACCCGTGTTGC 60.319 55.000 0.00 0.00 34.13 4.17
2935 3297 0.316841 CCATCCCAAAACCCGTGTTG 59.683 55.000 0.00 0.00 34.13 3.33
2936 3298 0.186386 TCCATCCCAAAACCCGTGTT 59.814 50.000 0.00 0.00 35.82 3.32
2937 3299 0.538746 GTCCATCCCAAAACCCGTGT 60.539 55.000 0.00 0.00 0.00 4.49
2938 3300 1.582610 CGTCCATCCCAAAACCCGTG 61.583 60.000 0.00 0.00 0.00 4.94
2939 3301 1.302993 CGTCCATCCCAAAACCCGT 60.303 57.895 0.00 0.00 0.00 5.28
2940 3302 2.043980 CCGTCCATCCCAAAACCCG 61.044 63.158 0.00 0.00 0.00 5.28
2941 3303 0.679960 CTCCGTCCATCCCAAAACCC 60.680 60.000 0.00 0.00 0.00 4.11
2942 3304 0.037734 ACTCCGTCCATCCCAAAACC 59.962 55.000 0.00 0.00 0.00 3.27
2943 3305 2.773993 TACTCCGTCCATCCCAAAAC 57.226 50.000 0.00 0.00 0.00 2.43
2944 3306 4.013728 CAAATACTCCGTCCATCCCAAAA 58.986 43.478 0.00 0.00 0.00 2.44
2945 3307 3.616219 CAAATACTCCGTCCATCCCAAA 58.384 45.455 0.00 0.00 0.00 3.28
2946 3308 2.682563 GCAAATACTCCGTCCATCCCAA 60.683 50.000 0.00 0.00 0.00 4.12
2947 3309 1.134220 GCAAATACTCCGTCCATCCCA 60.134 52.381 0.00 0.00 0.00 4.37
2948 3310 1.141053 AGCAAATACTCCGTCCATCCC 59.859 52.381 0.00 0.00 0.00 3.85
2949 3311 2.622064 AGCAAATACTCCGTCCATCC 57.378 50.000 0.00 0.00 0.00 3.51
2950 3312 3.433615 GCATAGCAAATACTCCGTCCATC 59.566 47.826 0.00 0.00 0.00 3.51
2951 3313 3.071602 AGCATAGCAAATACTCCGTCCAT 59.928 43.478 0.00 0.00 0.00 3.41
2952 3314 2.434336 AGCATAGCAAATACTCCGTCCA 59.566 45.455 0.00 0.00 0.00 4.02
2953 3315 3.113260 AGCATAGCAAATACTCCGTCC 57.887 47.619 0.00 0.00 0.00 4.79
2954 3316 6.036735 TGTTTTAGCATAGCAAATACTCCGTC 59.963 38.462 0.00 0.00 0.00 4.79
2955 3317 5.878116 TGTTTTAGCATAGCAAATACTCCGT 59.122 36.000 0.00 0.00 0.00 4.69
2956 3318 6.358118 TGTTTTAGCATAGCAAATACTCCG 57.642 37.500 0.00 0.00 0.00 4.63
2957 3319 7.013274 TCCATGTTTTAGCATAGCAAATACTCC 59.987 37.037 0.00 0.00 0.00 3.85
2958 3320 7.857885 GTCCATGTTTTAGCATAGCAAATACTC 59.142 37.037 0.00 0.00 0.00 2.59
2959 3321 7.339212 TGTCCATGTTTTAGCATAGCAAATACT 59.661 33.333 0.00 0.00 0.00 2.12
2960 3322 7.479980 TGTCCATGTTTTAGCATAGCAAATAC 58.520 34.615 0.00 0.00 0.00 1.89
2961 3323 7.201812 CCTGTCCATGTTTTAGCATAGCAAATA 60.202 37.037 0.00 0.00 0.00 1.40
2962 3324 6.406177 CCTGTCCATGTTTTAGCATAGCAAAT 60.406 38.462 0.00 0.00 0.00 2.32
2963 3325 5.105797 CCTGTCCATGTTTTAGCATAGCAAA 60.106 40.000 0.00 0.00 0.00 3.68
2964 3326 4.398988 CCTGTCCATGTTTTAGCATAGCAA 59.601 41.667 0.00 0.00 0.00 3.91
2965 3327 3.947196 CCTGTCCATGTTTTAGCATAGCA 59.053 43.478 0.00 0.00 0.00 3.49
2966 3328 3.243201 GCCTGTCCATGTTTTAGCATAGC 60.243 47.826 0.00 0.00 0.00 2.97
2967 3329 3.316308 GGCCTGTCCATGTTTTAGCATAG 59.684 47.826 0.00 0.00 34.01 2.23
2968 3330 3.287222 GGCCTGTCCATGTTTTAGCATA 58.713 45.455 0.00 0.00 34.01 3.14
2969 3331 2.102578 GGCCTGTCCATGTTTTAGCAT 58.897 47.619 0.00 0.00 34.01 3.79
2970 3332 1.202989 TGGCCTGTCCATGTTTTAGCA 60.203 47.619 3.32 0.00 40.72 3.49
2971 3333 1.544724 TGGCCTGTCCATGTTTTAGC 58.455 50.000 3.32 0.00 40.72 3.09
2972 3334 3.320541 TGTTTGGCCTGTCCATGTTTTAG 59.679 43.478 3.32 0.00 46.04 1.85
2973 3335 3.300388 TGTTTGGCCTGTCCATGTTTTA 58.700 40.909 3.32 0.00 46.04 1.52
2974 3336 2.114616 TGTTTGGCCTGTCCATGTTTT 58.885 42.857 3.32 0.00 46.04 2.43
2975 3337 1.786937 TGTTTGGCCTGTCCATGTTT 58.213 45.000 3.32 0.00 46.04 2.83
2976 3338 1.786937 TTGTTTGGCCTGTCCATGTT 58.213 45.000 3.32 0.00 46.04 2.71
2977 3339 1.786937 TTTGTTTGGCCTGTCCATGT 58.213 45.000 3.32 0.00 46.04 3.21
2978 3340 3.068560 CAATTTGTTTGGCCTGTCCATG 58.931 45.455 3.32 0.00 46.04 3.66
2979 3341 3.405823 CAATTTGTTTGGCCTGTCCAT 57.594 42.857 3.32 0.00 46.04 3.41
2980 3342 2.906691 CAATTTGTTTGGCCTGTCCA 57.093 45.000 3.32 0.00 44.85 4.02
2996 3358 5.539955 AGGAGTAAAACAATTGAGCACCAAT 59.460 36.000 13.59 0.00 46.86 3.16
2997 3359 4.892934 AGGAGTAAAACAATTGAGCACCAA 59.107 37.500 13.59 0.00 39.41 3.67
2998 3360 4.469657 AGGAGTAAAACAATTGAGCACCA 58.530 39.130 13.59 0.00 0.00 4.17
2999 3361 6.016610 TGTTAGGAGTAAAACAATTGAGCACC 60.017 38.462 13.59 6.12 32.86 5.01
3000 3362 6.966021 TGTTAGGAGTAAAACAATTGAGCAC 58.034 36.000 13.59 4.45 32.86 4.40
3001 3363 7.759489 ATGTTAGGAGTAAAACAATTGAGCA 57.241 32.000 13.59 0.00 38.95 4.26
3002 3364 9.476202 AAAATGTTAGGAGTAAAACAATTGAGC 57.524 29.630 13.59 0.00 38.95 4.26
3008 3370 9.906660 CATGCTAAAATGTTAGGAGTAAAACAA 57.093 29.630 4.80 0.00 40.54 2.83
3009 3371 8.026607 GCATGCTAAAATGTTAGGAGTAAAACA 58.973 33.333 11.37 0.00 40.54 2.83
3010 3372 7.488150 GGCATGCTAAAATGTTAGGAGTAAAAC 59.512 37.037 18.92 0.00 40.54 2.43
3011 3373 7.363443 GGGCATGCTAAAATGTTAGGAGTAAAA 60.363 37.037 18.92 0.00 40.54 1.52
3012 3374 6.096282 GGGCATGCTAAAATGTTAGGAGTAAA 59.904 38.462 18.92 0.00 40.54 2.01
3013 3375 5.592688 GGGCATGCTAAAATGTTAGGAGTAA 59.407 40.000 18.92 0.00 40.54 2.24
3014 3376 5.130350 GGGCATGCTAAAATGTTAGGAGTA 58.870 41.667 18.92 0.00 40.54 2.59
3015 3377 3.954258 GGGCATGCTAAAATGTTAGGAGT 59.046 43.478 18.92 0.00 40.54 3.85
3016 3378 3.953612 TGGGCATGCTAAAATGTTAGGAG 59.046 43.478 18.92 0.00 40.54 3.69
3017 3379 3.699038 GTGGGCATGCTAAAATGTTAGGA 59.301 43.478 18.92 1.85 41.33 2.94
3018 3380 3.446873 TGTGGGCATGCTAAAATGTTAGG 59.553 43.478 18.92 0.00 37.74 2.69
3019 3381 4.423732 GTGTGGGCATGCTAAAATGTTAG 58.576 43.478 18.92 0.00 39.90 2.34
3020 3382 3.194542 GGTGTGGGCATGCTAAAATGTTA 59.805 43.478 18.92 0.00 0.00 2.41
3021 3383 2.028203 GGTGTGGGCATGCTAAAATGTT 60.028 45.455 18.92 0.00 0.00 2.71
3022 3384 1.550072 GGTGTGGGCATGCTAAAATGT 59.450 47.619 18.92 0.00 0.00 2.71
3023 3385 1.826720 AGGTGTGGGCATGCTAAAATG 59.173 47.619 18.92 0.00 0.00 2.32
3024 3386 2.236489 AGGTGTGGGCATGCTAAAAT 57.764 45.000 18.92 0.00 0.00 1.82
3025 3387 2.008242 AAGGTGTGGGCATGCTAAAA 57.992 45.000 18.92 0.00 0.00 1.52
3026 3388 2.889170 TAAGGTGTGGGCATGCTAAA 57.111 45.000 18.92 0.00 0.00 1.85
3027 3389 2.509548 AGATAAGGTGTGGGCATGCTAA 59.490 45.455 18.92 2.88 0.00 3.09
3028 3390 2.126882 AGATAAGGTGTGGGCATGCTA 58.873 47.619 18.92 4.21 0.00 3.49
3029 3391 0.921896 AGATAAGGTGTGGGCATGCT 59.078 50.000 18.92 0.00 0.00 3.79
3030 3392 1.406539 CAAGATAAGGTGTGGGCATGC 59.593 52.381 9.90 9.90 0.00 4.06
3031 3393 2.026641 CCAAGATAAGGTGTGGGCATG 58.973 52.381 0.00 0.00 0.00 4.06
3032 3394 1.686115 GCCAAGATAAGGTGTGGGCAT 60.686 52.381 0.00 0.00 39.66 4.40
3033 3395 0.323360 GCCAAGATAAGGTGTGGGCA 60.323 55.000 0.00 0.00 39.66 5.36
3034 3396 0.323360 TGCCAAGATAAGGTGTGGGC 60.323 55.000 0.00 0.00 40.29 5.36
3035 3397 1.281867 TCTGCCAAGATAAGGTGTGGG 59.718 52.381 0.00 0.00 0.00 4.61
3036 3398 2.787473 TCTGCCAAGATAAGGTGTGG 57.213 50.000 0.00 0.00 0.00 4.17
3037 3399 4.274459 GCTATTCTGCCAAGATAAGGTGTG 59.726 45.833 0.00 0.00 30.72 3.82
3038 3400 4.164988 AGCTATTCTGCCAAGATAAGGTGT 59.835 41.667 0.00 0.00 30.72 4.16
3039 3401 4.514441 CAGCTATTCTGCCAAGATAAGGTG 59.486 45.833 0.00 0.00 37.02 4.00
3040 3402 4.445448 CCAGCTATTCTGCCAAGATAAGGT 60.445 45.833 0.00 0.00 41.50 3.50
3041 3403 4.070716 CCAGCTATTCTGCCAAGATAAGG 58.929 47.826 0.00 0.00 41.50 2.69
3042 3404 4.965814 TCCAGCTATTCTGCCAAGATAAG 58.034 43.478 0.00 0.00 41.50 1.73
3043 3405 5.573380 ATCCAGCTATTCTGCCAAGATAA 57.427 39.130 0.00 0.00 41.50 1.75
3044 3406 5.188555 CCTATCCAGCTATTCTGCCAAGATA 59.811 44.000 0.00 0.00 41.50 1.98
3045 3407 4.019501 CCTATCCAGCTATTCTGCCAAGAT 60.020 45.833 0.00 0.00 41.50 2.40
3046 3408 3.326006 CCTATCCAGCTATTCTGCCAAGA 59.674 47.826 0.00 0.00 41.50 3.02
3047 3409 3.072184 ACCTATCCAGCTATTCTGCCAAG 59.928 47.826 0.00 0.00 41.50 3.61
3048 3410 3.048600 ACCTATCCAGCTATTCTGCCAA 58.951 45.455 0.00 0.00 41.50 4.52
3049 3411 2.634940 GACCTATCCAGCTATTCTGCCA 59.365 50.000 0.00 0.00 41.50 4.92
3050 3412 2.903135 AGACCTATCCAGCTATTCTGCC 59.097 50.000 0.00 0.00 41.50 4.85
3051 3413 4.615588 AAGACCTATCCAGCTATTCTGC 57.384 45.455 0.00 0.00 41.50 4.26
3052 3414 5.336055 CCGTAAGACCTATCCAGCTATTCTG 60.336 48.000 0.00 0.00 40.76 3.02
3053 3415 4.767928 CCGTAAGACCTATCCAGCTATTCT 59.232 45.833 0.00 0.00 43.02 2.40
3054 3416 4.082136 CCCGTAAGACCTATCCAGCTATTC 60.082 50.000 0.00 0.00 43.02 1.75
3055 3417 3.833070 CCCGTAAGACCTATCCAGCTATT 59.167 47.826 0.00 0.00 43.02 1.73
3056 3418 3.432378 CCCGTAAGACCTATCCAGCTAT 58.568 50.000 0.00 0.00 43.02 2.97
3057 3419 2.490351 CCCCGTAAGACCTATCCAGCTA 60.490 54.545 0.00 0.00 43.02 3.32
3058 3420 1.705873 CCCGTAAGACCTATCCAGCT 58.294 55.000 0.00 0.00 43.02 4.24
3059 3421 0.680061 CCCCGTAAGACCTATCCAGC 59.320 60.000 0.00 0.00 43.02 4.85
3060 3422 2.240279 CTCCCCGTAAGACCTATCCAG 58.760 57.143 0.00 0.00 43.02 3.86
3061 3423 1.572415 ACTCCCCGTAAGACCTATCCA 59.428 52.381 0.00 0.00 43.02 3.41
3062 3424 2.378378 ACTCCCCGTAAGACCTATCC 57.622 55.000 0.00 0.00 43.02 2.59
3063 3425 7.374272 GTTAAATACTCCCCGTAAGACCTATC 58.626 42.308 0.00 0.00 43.02 2.08
3064 3426 6.268617 GGTTAAATACTCCCCGTAAGACCTAT 59.731 42.308 0.00 0.00 43.02 2.57
3065 3427 5.598417 GGTTAAATACTCCCCGTAAGACCTA 59.402 44.000 0.00 0.00 43.02 3.08
3066 3428 4.406972 GGTTAAATACTCCCCGTAAGACCT 59.593 45.833 0.00 0.00 43.02 3.85
3067 3429 4.162131 TGGTTAAATACTCCCCGTAAGACC 59.838 45.833 0.00 0.00 43.02 3.85
3068 3430 5.343307 TGGTTAAATACTCCCCGTAAGAC 57.657 43.478 0.00 0.00 43.02 3.01
3069 3431 6.371595 TTTGGTTAAATACTCCCCGTAAGA 57.628 37.500 0.00 0.00 43.02 2.10
3070 3432 7.175467 AGTTTTTGGTTAAATACTCCCCGTAAG 59.825 37.037 0.00 0.00 34.37 2.34
3071 3433 7.003482 AGTTTTTGGTTAAATACTCCCCGTAA 58.997 34.615 0.00 0.00 34.37 3.18
3072 3434 6.541907 AGTTTTTGGTTAAATACTCCCCGTA 58.458 36.000 0.00 0.00 34.37 4.02
3073 3435 5.387788 AGTTTTTGGTTAAATACTCCCCGT 58.612 37.500 0.00 0.00 34.37 5.28
3074 3436 5.970317 AGTTTTTGGTTAAATACTCCCCG 57.030 39.130 0.00 0.00 34.37 5.73
3075 3437 6.720748 TGGTAGTTTTTGGTTAAATACTCCCC 59.279 38.462 0.00 0.00 38.47 4.81
3148 3510 8.418662 GGTTTAGGACAAATTTGGTAGTTTTCT 58.581 33.333 21.74 6.69 0.00 2.52
3496 3864 1.107114 GCTCTCCTCGTCATTCCAGA 58.893 55.000 0.00 0.00 0.00 3.86
3746 4114 5.244626 ACCTTCAAAATCCACCATCTTCTTG 59.755 40.000 0.00 0.00 0.00 3.02
3969 4409 8.731605 CAGTTCACAGTACACTAAAGATCTCTA 58.268 37.037 0.00 0.00 0.00 2.43
4586 5110 4.313020 ACTCAATCTTTGCCTGATCCTT 57.687 40.909 0.00 0.00 0.00 3.36
4909 5437 9.238368 TGAAACTTTCCCAAAATATACACCTAG 57.762 33.333 0.00 0.00 0.00 3.02
5094 7839 9.049523 CACACATGATATATGCAGAGTAAAACT 57.950 33.333 0.00 0.00 0.00 2.66
5708 8484 1.313091 CGAGGTGGATGAGGTCGTCA 61.313 60.000 0.00 0.00 40.38 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.