Multiple sequence alignment - TraesCS5D01G236900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G236900 chr5D 100.000 2783 0 0 1 2783 345495438 345492656 0.000000e+00 5140.0
1 TraesCS5D01G236900 chr5D 79.323 1654 314 20 28 1674 24572403 24574035 0.000000e+00 1134.0
2 TraesCS5D01G236900 chr5D 96.429 168 6 0 1971 2138 198477555 198477388 7.590000e-71 278.0
3 TraesCS5D01G236900 chr5B 95.696 1975 81 4 1 1973 406173353 406175325 0.000000e+00 3173.0
4 TraesCS5D01G236900 chr5B 86.364 682 46 15 2137 2778 406177609 406178283 0.000000e+00 701.0
5 TraesCS5D01G236900 chr5B 86.364 682 46 15 2137 2778 406185426 406186100 0.000000e+00 701.0
6 TraesCS5D01G236900 chr5B 86.217 682 47 15 2137 2778 406183648 406184322 0.000000e+00 695.0
7 TraesCS5D01G236900 chr5B 92.199 282 21 1 2137 2418 406175337 406175617 5.590000e-107 398.0
8 TraesCS5D01G236900 chr5B 90.476 189 11 1 1779 1960 406183448 406183636 2.770000e-60 243.0
9 TraesCS5D01G236900 chr5B 89.947 189 12 1 1779 1960 406177409 406177597 1.290000e-58 237.0
10 TraesCS5D01G236900 chr5B 89.947 189 12 1 1779 1960 406185226 406185414 1.290000e-58 237.0
11 TraesCS5D01G236900 chr5B 81.188 303 20 9 2508 2778 406181501 406181798 2.810000e-50 209.0
12 TraesCS5D01G236900 chr5B 90.517 116 4 1 1779 1887 406179227 406179342 2.230000e-31 147.0
13 TraesCS5D01G236900 chr5B 95.918 49 2 0 2445 2493 406175617 406175665 2.300000e-11 80.5
14 TraesCS5D01G236900 chr5A 95.757 1037 44 0 924 1960 445571923 445572959 0.000000e+00 1672.0
15 TraesCS5D01G236900 chr2D 82.654 1816 279 21 39 1840 14897823 14896030 0.000000e+00 1576.0
16 TraesCS5D01G236900 chr2D 82.006 1745 288 18 39 1774 15114906 15116633 0.000000e+00 1459.0
17 TraesCS5D01G236900 chr2B 82.992 1758 267 21 39 1784 26753470 26751733 0.000000e+00 1561.0
18 TraesCS5D01G236900 chr2A 82.916 1756 270 19 42 1786 17001758 17000022 0.000000e+00 1554.0
19 TraesCS5D01G236900 chrUn 79.910 1777 337 10 7 1774 16773153 16774918 0.000000e+00 1286.0
20 TraesCS5D01G236900 chrUn 82.019 317 20 9 2494 2778 425192410 425192099 4.630000e-58 235.0
21 TraesCS5D01G236900 chr7D 79.263 1683 304 30 3 1674 634110477 634108829 0.000000e+00 1133.0
22 TraesCS5D01G236900 chr7D 97.561 164 4 0 1975 2138 26392830 26392993 5.870000e-72 281.0
23 TraesCS5D01G236900 chr7B 78.377 1688 319 27 8 1686 742554474 742552824 0.000000e+00 1053.0
24 TraesCS5D01G236900 chr7B 95.402 174 8 0 1971 2144 460329724 460329551 7.590000e-71 278.0
25 TraesCS5D01G236900 chr7B 90.909 77 7 0 1893 1969 645426511 645426435 1.360000e-18 104.0
26 TraesCS5D01G236900 chr6D 96.491 171 5 1 1975 2145 3303222 3303053 5.870000e-72 281.0
27 TraesCS5D01G236900 chr6D 90.816 196 13 4 1972 2166 392896972 392897163 9.890000e-65 257.0
28 TraesCS5D01G236900 chr6B 96.951 164 5 0 1975 2138 95349412 95349575 2.730000e-70 276.0
29 TraesCS5D01G236900 chr4D 94.915 177 8 1 1967 2143 72662821 72662646 2.730000e-70 276.0
30 TraesCS5D01G236900 chr3B 95.882 170 7 0 1971 2140 52744110 52743941 2.730000e-70 276.0
31 TraesCS5D01G236900 chr4B 94.886 176 8 1 1964 2139 338425956 338425782 9.820000e-70 274.0
32 TraesCS5D01G236900 chr1B 89.024 82 9 0 1893 1974 68136237 68136156 4.900000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G236900 chr5D 345492656 345495438 2782 True 5140.000000 5140 100.000000 1 2783 1 chr5D.!!$R2 2782
1 TraesCS5D01G236900 chr5D 24572403 24574035 1632 False 1134.000000 1134 79.323000 28 1674 1 chr5D.!!$F1 1646
2 TraesCS5D01G236900 chr5B 406173353 406186100 12747 False 620.136364 3173 89.530273 1 2778 11 chr5B.!!$F1 2777
3 TraesCS5D01G236900 chr5A 445571923 445572959 1036 False 1672.000000 1672 95.757000 924 1960 1 chr5A.!!$F1 1036
4 TraesCS5D01G236900 chr2D 14896030 14897823 1793 True 1576.000000 1576 82.654000 39 1840 1 chr2D.!!$R1 1801
5 TraesCS5D01G236900 chr2D 15114906 15116633 1727 False 1459.000000 1459 82.006000 39 1774 1 chr2D.!!$F1 1735
6 TraesCS5D01G236900 chr2B 26751733 26753470 1737 True 1561.000000 1561 82.992000 39 1784 1 chr2B.!!$R1 1745
7 TraesCS5D01G236900 chr2A 17000022 17001758 1736 True 1554.000000 1554 82.916000 42 1786 1 chr2A.!!$R1 1744
8 TraesCS5D01G236900 chrUn 16773153 16774918 1765 False 1286.000000 1286 79.910000 7 1774 1 chrUn.!!$F1 1767
9 TraesCS5D01G236900 chr7D 634108829 634110477 1648 True 1133.000000 1133 79.263000 3 1674 1 chr7D.!!$R1 1671
10 TraesCS5D01G236900 chr7B 742552824 742554474 1650 True 1053.000000 1053 78.377000 8 1686 1 chr7B.!!$R3 1678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 743 2.304761 TGGAATTGTACAGGTCCTGGAC 59.695 50.0 25.55 25.55 44.96 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 10579 0.108424 CAGCAGACTACACAGAGCCC 60.108 60.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
727 743 2.304761 TGGAATTGTACAGGTCCTGGAC 59.695 50.000 25.55 25.55 44.96 4.02
745 761 3.058160 CTTGAAGGCTGCACGGGG 61.058 66.667 0.00 0.00 0.00 5.73
1179 1201 2.832129 TGGCTACTCTCTACAAACCCTG 59.168 50.000 0.00 0.00 0.00 4.45
1182 1204 3.368531 GCTACTCTCTACAAACCCTGGTG 60.369 52.174 0.00 0.00 0.00 4.17
1404 1426 3.304057 CGCTGTTTTCTCTCACCTTTTCC 60.304 47.826 0.00 0.00 0.00 3.13
1645 1668 1.600413 GGCTCTTTGGTGCAGAAAACG 60.600 52.381 0.00 0.00 34.07 3.60
1731 1754 3.756434 AGATAGTAAGCGAGATGGAGAGC 59.244 47.826 0.00 0.00 0.00 4.09
1871 4186 8.031864 TCTCTTTACTTGTTCTCAGTGATCATC 58.968 37.037 0.00 0.00 0.00 2.92
1875 4190 3.317603 TGTTCTCAGTGATCATCGCAA 57.682 42.857 0.00 0.00 0.00 4.85
1889 10243 2.211250 TCGCAACTAGTCTGGGTAGT 57.789 50.000 16.10 0.00 31.80 2.73
1895 10249 5.349809 GCAACTAGTCTGGGTAGTTCATAC 58.650 45.833 0.00 0.00 38.42 2.39
1921 10275 5.465724 AGAGTGTCAAACGGTTCAGTTATTC 59.534 40.000 0.00 0.00 33.41 1.75
1960 10314 9.491675 AAACAAATTTAATCATCAACAGCATGA 57.508 25.926 0.00 0.00 39.69 3.07
1962 10316 8.089597 ACAAATTTAATCATCAACAGCATGACA 58.910 29.630 0.00 0.00 39.69 3.58
1963 10317 9.093970 CAAATTTAATCATCAACAGCATGACAT 57.906 29.630 0.00 0.00 39.69 3.06
1984 10338 9.938280 TGACATTATTATTTATTACTCCCTCCG 57.062 33.333 0.00 0.00 0.00 4.63
1985 10339 9.939802 GACATTATTATTTATTACTCCCTCCGT 57.060 33.333 0.00 0.00 0.00 4.69
1988 10342 9.955102 ATTATTATTTATTACTCCCTCCGTTCC 57.045 33.333 0.00 0.00 0.00 3.62
1989 10343 4.701651 ATTTATTACTCCCTCCGTTCCC 57.298 45.455 0.00 0.00 0.00 3.97
1990 10344 2.852714 TATTACTCCCTCCGTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
1991 10345 1.961133 ATTACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
1992 10346 1.732117 TTACTCCCTCCGTTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
1993 10347 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
1994 10348 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1995 10349 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
1996 10350 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
1997 10351 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
1998 10352 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
1999 10353 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
2000 10354 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
2001 10355 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
2002 10356 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2003 10357 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2004 10358 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2005 10359 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2006 10360 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2007 10361 7.666388 TCCGTTCCCAAATATTTGTCTTTCTAA 59.334 33.333 23.24 7.04 36.45 2.10
2008 10362 8.301002 CCGTTCCCAAATATTTGTCTTTCTAAA 58.699 33.333 23.24 6.21 36.45 1.85
2009 10363 9.341899 CGTTCCCAAATATTTGTCTTTCTAAAG 57.658 33.333 23.24 7.00 36.45 1.85
2022 10376 9.787532 TTGTCTTTCTAAAGATTTCAACAAGTG 57.212 29.630 8.31 0.00 45.83 3.16
2023 10377 9.173021 TGTCTTTCTAAAGATTTCAACAAGTGA 57.827 29.630 8.31 0.00 45.83 3.41
2024 10378 9.439537 GTCTTTCTAAAGATTTCAACAAGTGAC 57.560 33.333 8.31 0.00 45.83 3.67
2025 10379 9.396022 TCTTTCTAAAGATTTCAACAAGTGACT 57.604 29.630 1.00 0.00 39.95 3.41
2028 10382 9.607988 TTCTAAAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
2029 10383 9.778741 TCTAAAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
2032 10386 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
2033 10387 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2034 10388 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2035 10389 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2036 10390 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2037 10391 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2038 10392 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2039 10393 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2040 10394 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2041 10395 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2042 10396 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2043 10397 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2044 10398 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2045 10399 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2046 10400 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2047 10401 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2048 10402 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2049 10403 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2050 10404 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2051 10405 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2052 10406 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2053 10407 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2054 10408 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2055 10409 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2092 10446 7.823665 TCTATATACATCCGTATGTTGTGTCC 58.176 38.462 0.00 0.00 44.07 4.02
2093 10447 4.746535 ATACATCCGTATGTTGTGTCCA 57.253 40.909 0.00 0.00 44.07 4.02
2094 10448 3.627395 ACATCCGTATGTTGTGTCCAT 57.373 42.857 0.00 0.00 44.07 3.41
2095 10449 3.950397 ACATCCGTATGTTGTGTCCATT 58.050 40.909 0.00 0.00 44.07 3.16
2096 10450 4.331968 ACATCCGTATGTTGTGTCCATTT 58.668 39.130 0.00 0.00 44.07 2.32
2097 10451 4.155826 ACATCCGTATGTTGTGTCCATTTG 59.844 41.667 0.00 0.00 44.07 2.32
2098 10452 4.009370 TCCGTATGTTGTGTCCATTTGA 57.991 40.909 0.00 0.00 0.00 2.69
2099 10453 4.390264 TCCGTATGTTGTGTCCATTTGAA 58.610 39.130 0.00 0.00 0.00 2.69
2100 10454 4.822350 TCCGTATGTTGTGTCCATTTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
2101 10455 5.475220 TCCGTATGTTGTGTCCATTTGAAAT 59.525 36.000 0.00 0.00 0.00 2.17
2102 10456 5.572511 CCGTATGTTGTGTCCATTTGAAATG 59.427 40.000 10.84 10.84 0.00 2.32
2103 10457 6.377780 CGTATGTTGTGTCCATTTGAAATGA 58.622 36.000 18.82 3.09 0.00 2.57
2104 10458 6.305399 CGTATGTTGTGTCCATTTGAAATGAC 59.695 38.462 18.82 14.28 0.00 3.06
2105 10459 5.850557 TGTTGTGTCCATTTGAAATGACT 57.149 34.783 18.82 0.00 0.00 3.41
2106 10460 6.951062 TGTTGTGTCCATTTGAAATGACTA 57.049 33.333 18.82 4.22 0.00 2.59
2107 10461 6.969366 TGTTGTGTCCATTTGAAATGACTAG 58.031 36.000 18.82 2.80 0.00 2.57
2108 10462 6.770303 TGTTGTGTCCATTTGAAATGACTAGA 59.230 34.615 18.82 5.13 0.00 2.43
2109 10463 7.284261 TGTTGTGTCCATTTGAAATGACTAGAA 59.716 33.333 18.82 6.60 0.00 2.10
2110 10464 7.815840 TGTGTCCATTTGAAATGACTAGAAA 57.184 32.000 18.82 0.55 0.00 2.52
2111 10465 7.874940 TGTGTCCATTTGAAATGACTAGAAAG 58.125 34.615 18.82 0.37 0.00 2.62
2112 10466 7.719193 TGTGTCCATTTGAAATGACTAGAAAGA 59.281 33.333 18.82 2.72 0.00 2.52
2113 10467 8.017946 GTGTCCATTTGAAATGACTAGAAAGAC 58.982 37.037 18.82 13.95 0.00 3.01
2114 10468 7.719193 TGTCCATTTGAAATGACTAGAAAGACA 59.281 33.333 18.82 16.01 0.00 3.41
2115 10469 8.567948 GTCCATTTGAAATGACTAGAAAGACAA 58.432 33.333 18.82 0.00 31.23 3.18
2116 10470 9.130661 TCCATTTGAAATGACTAGAAAGACAAA 57.869 29.630 18.82 0.00 31.23 2.83
2117 10471 9.918630 CCATTTGAAATGACTAGAAAGACAAAT 57.081 29.630 18.82 0.00 36.38 2.32
2125 10479 9.753674 AATGACTAGAAAGACAAATATTTGGGA 57.246 29.630 27.43 7.59 42.34 4.37
2126 10480 9.753674 ATGACTAGAAAGACAAATATTTGGGAA 57.246 29.630 27.43 8.61 42.34 3.97
2127 10481 9.010029 TGACTAGAAAGACAAATATTTGGGAAC 57.990 33.333 27.43 16.80 42.34 3.62
2128 10482 8.040716 ACTAGAAAGACAAATATTTGGGAACG 57.959 34.615 27.43 12.76 42.34 3.95
2129 10483 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
2130 10484 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
2131 10485 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
2132 10486 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
2133 10487 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
2134 10488 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
2135 10489 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
2147 10501 2.233922 ACGGAGGGAGTAGTTTCATGTG 59.766 50.000 0.00 0.00 0.00 3.21
2156 10510 3.507233 AGTAGTTTCATGTGTGGCAATGG 59.493 43.478 0.00 0.00 0.00 3.16
2157 10511 2.596346 AGTTTCATGTGTGGCAATGGA 58.404 42.857 0.00 0.00 0.00 3.41
2158 10512 2.297033 AGTTTCATGTGTGGCAATGGAC 59.703 45.455 0.00 0.00 0.00 4.02
2159 10513 1.992538 TTCATGTGTGGCAATGGACA 58.007 45.000 0.00 0.00 0.00 4.02
2160 10514 2.219080 TCATGTGTGGCAATGGACAT 57.781 45.000 0.00 0.00 32.08 3.06
2188 10549 8.722480 TTTATTGTGTGTATTCATCTCTGGAG 57.278 34.615 0.00 0.00 0.00 3.86
2218 10579 6.128007 ACCAGAATTTGAAGTTATAGGCGTTG 60.128 38.462 0.00 0.00 0.00 4.10
2242 10603 2.489722 CTCTGTGTAGTCTGCTGCTGTA 59.510 50.000 0.00 0.00 0.00 2.74
2277 10638 2.587060 TGGAACATAGGGGTCTCCAT 57.413 50.000 0.00 0.00 38.24 3.41
2288 10649 0.321919 GGTCTCCATTGTGCAGCAGA 60.322 55.000 0.00 0.00 0.00 4.26
2292 10653 1.443194 CCATTGTGCAGCAGAACGC 60.443 57.895 7.21 0.00 42.91 4.84
2293 10654 1.283487 CATTGTGCAGCAGAACGCA 59.717 52.632 7.21 0.00 46.13 5.24
2322 12460 4.948608 TCGTAAGAGTAGCAGAAGACAG 57.051 45.455 0.00 0.00 45.01 3.51
2327 12465 4.916983 AGAGTAGCAGAAGACAGCTATG 57.083 45.455 0.00 0.00 41.64 2.23
2338 12476 5.188555 AGAAGACAGCTATGGTTCTGAATCA 59.811 40.000 5.72 5.72 34.34 2.57
2339 12477 5.426689 AGACAGCTATGGTTCTGAATCAA 57.573 39.130 7.53 0.00 34.57 2.57
2340 12478 5.999044 AGACAGCTATGGTTCTGAATCAAT 58.001 37.500 7.53 0.00 34.57 2.57
2341 12479 5.821470 AGACAGCTATGGTTCTGAATCAATG 59.179 40.000 7.53 7.11 34.57 2.82
2350 12488 7.728847 TGGTTCTGAATCAATGGTATTATCG 57.271 36.000 0.00 0.00 0.00 2.92
2375 12513 7.107323 GAATCGAATTCAGTCACATGGTTGTG 61.107 42.308 6.22 0.00 44.78 3.33
2403 12541 5.522641 AGCTTGGGTTTGATCTGGAAATAT 58.477 37.500 0.00 0.00 0.00 1.28
2444 12582 4.712051 TGAGCATTACCCAGCATAGAAT 57.288 40.909 0.00 0.00 0.00 2.40
2523 12661 5.163713 GGGTTCTCAGTCAATGTTAAGATGC 60.164 44.000 0.00 0.00 0.00 3.91
2539 12677 3.556817 TGCTACTGCATTGTCCCTG 57.443 52.632 0.00 0.00 45.31 4.45
2578 12717 2.829720 ACAACTGATGCATTGGCTCAAT 59.170 40.909 0.00 0.00 41.91 2.57
2591 12730 1.406539 GGCTCAATGGCATGATTCGTT 59.593 47.619 0.00 0.00 41.37 3.85
2605 12744 3.820467 TGATTCGTTTGATTTGCTCAGGT 59.180 39.130 0.00 0.00 34.68 4.00
2617 12756 0.320421 GCTCAGGTAACGGTGCTTCA 60.320 55.000 0.00 0.00 45.80 3.02
2618 12757 1.714794 CTCAGGTAACGGTGCTTCAG 58.285 55.000 0.00 0.00 46.39 3.02
2633 12792 1.060842 CTTCAGGTAGTCGACGTCTCG 59.939 57.143 14.70 1.54 41.65 4.04
2634 12793 0.738762 TCAGGTAGTCGACGTCTCGG 60.739 60.000 14.70 0.00 40.58 4.63
2646 12805 3.607775 CGACGTCTCGGAAGTTTCAGTAA 60.608 47.826 14.70 0.00 36.16 2.24
2647 12806 3.898529 ACGTCTCGGAAGTTTCAGTAAG 58.101 45.455 0.00 0.00 0.00 2.34
2650 12809 3.675698 GTCTCGGAAGTTTCAGTAAGCTG 59.324 47.826 0.00 0.00 43.87 4.24
2667 12826 1.135460 GCTGCCAAGATTCAAGAGCAC 60.135 52.381 0.00 0.00 0.00 4.40
2675 12840 3.406764 AGATTCAAGAGCACGCTTTCTT 58.593 40.909 0.00 0.00 34.09 2.52
2692 12857 6.154451 CTTTCTTAAGCTCCTCGTTGTAAC 57.846 41.667 0.00 0.00 0.00 2.50
2755 12925 5.818678 TTCTGAACAGAAGGGCTTTACTA 57.181 39.130 12.40 0.00 42.06 1.82
2761 12931 5.514500 ACAGAAGGGCTTTACTATGGAAA 57.486 39.130 0.00 0.00 0.00 3.13
2778 12948 3.888323 TGGAAAACAGTGCTTTATCTGCA 59.112 39.130 0.00 0.00 38.19 4.41
2779 12949 4.022935 TGGAAAACAGTGCTTTATCTGCAG 60.023 41.667 7.63 7.63 41.41 4.41
2780 12950 4.022849 GGAAAACAGTGCTTTATCTGCAGT 60.023 41.667 14.67 3.75 43.94 4.40
2781 12951 5.507985 GGAAAACAGTGCTTTATCTGCAGTT 60.508 40.000 14.67 8.22 41.55 3.16
2782 12952 5.520376 AAACAGTGCTTTATCTGCAGTTT 57.480 34.783 14.67 5.37 41.55 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
727 743 3.058160 CCCGTGCAGCCTTCAAGG 61.058 66.667 0.00 0.00 38.80 3.61
745 761 3.189287 CCTCTGTATGGTGCTGTTTGAAC 59.811 47.826 0.00 0.00 0.00 3.18
1404 1426 6.414987 CCTGTTTTTCTGCTCTAAACGAAAAG 59.585 38.462 0.00 0.00 36.89 2.27
1645 1668 2.735823 CACCTCTTTGAGCTTTGCAAC 58.264 47.619 0.00 0.00 0.00 4.17
1731 1754 1.079127 ACCGGTCCTCTTCATTGCG 60.079 57.895 0.00 0.00 0.00 4.85
1871 4186 2.230508 TGAACTACCCAGACTAGTTGCG 59.769 50.000 0.00 0.00 35.08 4.85
1875 4190 5.104610 TCTCGTATGAACTACCCAGACTAGT 60.105 44.000 0.00 0.00 0.00 2.57
1889 10243 3.005050 ACCGTTTGACACTCTCGTATGAA 59.995 43.478 0.00 0.00 0.00 2.57
1895 10249 1.787155 CTGAACCGTTTGACACTCTCG 59.213 52.381 0.00 0.00 0.00 4.04
1962 10316 9.955102 GGAACGGAGGGAGTAATAAATAATAAT 57.045 33.333 0.00 0.00 0.00 1.28
1963 10317 8.377799 GGGAACGGAGGGAGTAATAAATAATAA 58.622 37.037 0.00 0.00 0.00 1.40
1965 10319 6.330778 TGGGAACGGAGGGAGTAATAAATAAT 59.669 38.462 0.00 0.00 0.00 1.28
1966 10320 5.666718 TGGGAACGGAGGGAGTAATAAATAA 59.333 40.000 0.00 0.00 0.00 1.40
1968 10322 4.042174 TGGGAACGGAGGGAGTAATAAAT 58.958 43.478 0.00 0.00 0.00 1.40
1970 10324 3.119009 TGGGAACGGAGGGAGTAATAA 57.881 47.619 0.00 0.00 0.00 1.40
1971 10325 2.852714 TGGGAACGGAGGGAGTAATA 57.147 50.000 0.00 0.00 0.00 0.98
1972 10326 1.961133 TTGGGAACGGAGGGAGTAAT 58.039 50.000 0.00 0.00 0.00 1.89
1973 10327 1.732117 TTTGGGAACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
1974 10328 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1975 10329 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1976 10330 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
1977 10331 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
1978 10332 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
1979 10333 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
1980 10334 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
1981 10335 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
1982 10336 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
1983 10337 9.341899 CTTTAGAAAGACAAATATTTGGGAACG 57.658 33.333 27.43 6.31 42.34 3.95
1996 10350 9.787532 CACTTGTTGAAATCTTTAGAAAGACAA 57.212 29.630 6.85 4.98 46.80 3.18
1997 10351 9.173021 TCACTTGTTGAAATCTTTAGAAAGACA 57.827 29.630 6.85 0.00 46.80 3.41
1998 10352 9.439537 GTCACTTGTTGAAATCTTTAGAAAGAC 57.560 33.333 6.85 0.00 40.95 3.01
1999 10353 9.396022 AGTCACTTGTTGAAATCTTTAGAAAGA 57.604 29.630 7.15 7.15 41.72 2.52
2002 10356 9.607988 TGTAGTCACTTGTTGAAATCTTTAGAA 57.392 29.630 0.00 0.00 35.39 2.10
2003 10357 9.778741 ATGTAGTCACTTGTTGAAATCTTTAGA 57.221 29.630 0.00 0.00 35.39 2.10
2006 10360 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
2007 10361 7.117812 CCGTATGTAGTCACTTGTTGAAATCTT 59.882 37.037 0.00 0.00 35.39 2.40
2008 10362 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2009 10363 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2010 10364 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2011 10365 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2012 10366 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2013 10367 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2014 10368 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2015 10369 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2016 10370 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2017 10371 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2018 10372 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2019 10373 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2020 10374 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2021 10375 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2022 10376 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2023 10377 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2024 10378 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2025 10379 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2026 10380 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2027 10381 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2028 10382 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2029 10383 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2030 10384 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2031 10385 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2032 10386 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2033 10387 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2066 10420 8.467598 GGACACAACATACGGATGTATATAGAT 58.532 37.037 15.10 0.00 45.93 1.98
2067 10421 7.449086 TGGACACAACATACGGATGTATATAGA 59.551 37.037 15.10 0.00 45.93 1.98
2068 10422 7.599171 TGGACACAACATACGGATGTATATAG 58.401 38.462 15.10 5.45 45.93 1.31
2069 10423 7.527568 TGGACACAACATACGGATGTATATA 57.472 36.000 15.10 0.00 45.93 0.86
2070 10424 6.413783 TGGACACAACATACGGATGTATAT 57.586 37.500 15.10 0.00 45.93 0.86
2071 10425 5.855740 TGGACACAACATACGGATGTATA 57.144 39.130 15.10 0.00 45.93 1.47
2072 10426 4.746535 TGGACACAACATACGGATGTAT 57.253 40.909 15.10 2.23 45.93 2.29
2073 10427 4.746535 ATGGACACAACATACGGATGTA 57.253 40.909 15.10 0.00 45.93 2.29
2075 10429 4.394610 TCAAATGGACACAACATACGGATG 59.605 41.667 5.94 5.94 39.16 3.51
2076 10430 4.584874 TCAAATGGACACAACATACGGAT 58.415 39.130 0.00 0.00 0.00 4.18
2077 10431 4.009370 TCAAATGGACACAACATACGGA 57.991 40.909 0.00 0.00 0.00 4.69
2078 10432 4.757799 TTCAAATGGACACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
2079 10433 6.305399 GTCATTTCAAATGGACACAACATACG 59.695 38.462 10.30 0.00 0.00 3.06
2080 10434 7.370383 AGTCATTTCAAATGGACACAACATAC 58.630 34.615 10.30 0.00 32.79 2.39
2081 10435 7.523293 AGTCATTTCAAATGGACACAACATA 57.477 32.000 10.30 0.00 32.79 2.29
2082 10436 6.409524 AGTCATTTCAAATGGACACAACAT 57.590 33.333 10.30 0.00 32.79 2.71
2083 10437 5.850557 AGTCATTTCAAATGGACACAACA 57.149 34.783 10.30 0.00 32.79 3.33
2084 10438 7.202016 TCTAGTCATTTCAAATGGACACAAC 57.798 36.000 10.30 0.16 32.79 3.32
2085 10439 7.815840 TTCTAGTCATTTCAAATGGACACAA 57.184 32.000 10.30 0.00 32.79 3.33
2086 10440 7.719193 TCTTTCTAGTCATTTCAAATGGACACA 59.281 33.333 10.30 0.39 32.79 3.72
2087 10441 8.017946 GTCTTTCTAGTCATTTCAAATGGACAC 58.982 37.037 10.30 1.58 32.79 3.67
2088 10442 7.719193 TGTCTTTCTAGTCATTTCAAATGGACA 59.281 33.333 10.30 9.70 32.79 4.02
2089 10443 8.099364 TGTCTTTCTAGTCATTTCAAATGGAC 57.901 34.615 10.30 7.43 0.00 4.02
2090 10444 8.690203 TTGTCTTTCTAGTCATTTCAAATGGA 57.310 30.769 10.30 0.00 0.00 3.41
2091 10445 9.918630 ATTTGTCTTTCTAGTCATTTCAAATGG 57.081 29.630 10.30 0.00 33.66 3.16
2099 10453 9.753674 TCCCAAATATTTGTCTTTCTAGTCATT 57.246 29.630 23.24 0.00 36.45 2.57
2100 10454 9.753674 TTCCCAAATATTTGTCTTTCTAGTCAT 57.246 29.630 23.24 0.00 36.45 3.06
2101 10455 9.010029 GTTCCCAAATATTTGTCTTTCTAGTCA 57.990 33.333 23.24 0.00 36.45 3.41
2102 10456 8.175716 CGTTCCCAAATATTTGTCTTTCTAGTC 58.824 37.037 23.24 5.36 36.45 2.59
2103 10457 7.120726 CCGTTCCCAAATATTTGTCTTTCTAGT 59.879 37.037 23.24 0.00 36.45 2.57
2104 10458 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
2105 10459 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2106 10460 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2107 10461 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2108 10462 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2109 10463 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2110 10464 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
2111 10465 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
2112 10466 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
2113 10467 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
2114 10468 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
2115 10469 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
2116 10470 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2117 10471 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2118 10472 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2119 10473 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
2120 10474 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2121 10475 0.115745 AACTACTCCCTCCGTTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2122 10476 1.206610 GAAACTACTCCCTCCGTTCCC 59.793 57.143 0.00 0.00 0.00 3.97
2123 10477 1.897802 TGAAACTACTCCCTCCGTTCC 59.102 52.381 0.00 0.00 0.00 3.62
2124 10478 3.056035 ACATGAAACTACTCCCTCCGTTC 60.056 47.826 0.00 0.00 0.00 3.95
2125 10479 2.904434 ACATGAAACTACTCCCTCCGTT 59.096 45.455 0.00 0.00 0.00 4.44
2126 10480 2.233922 CACATGAAACTACTCCCTCCGT 59.766 50.000 0.00 0.00 0.00 4.69
2127 10481 2.233922 ACACATGAAACTACTCCCTCCG 59.766 50.000 0.00 0.00 0.00 4.63
2128 10482 3.600388 CACACATGAAACTACTCCCTCC 58.400 50.000 0.00 0.00 0.00 4.30
2129 10483 3.600388 CCACACATGAAACTACTCCCTC 58.400 50.000 0.00 0.00 0.00 4.30
2130 10484 2.290323 GCCACACATGAAACTACTCCCT 60.290 50.000 0.00 0.00 0.00 4.20
2131 10485 2.084546 GCCACACATGAAACTACTCCC 58.915 52.381 0.00 0.00 0.00 4.30
2132 10486 2.778299 TGCCACACATGAAACTACTCC 58.222 47.619 0.00 0.00 0.00 3.85
2133 10487 4.379813 CCATTGCCACACATGAAACTACTC 60.380 45.833 0.00 0.00 0.00 2.59
2134 10488 3.507233 CCATTGCCACACATGAAACTACT 59.493 43.478 0.00 0.00 0.00 2.57
2135 10489 3.505680 TCCATTGCCACACATGAAACTAC 59.494 43.478 0.00 0.00 0.00 2.73
2188 10549 8.560374 GCCTATAACTTCAAATTCTGGTACATC 58.440 37.037 0.00 0.00 38.20 3.06
2191 10552 6.537660 ACGCCTATAACTTCAAATTCTGGTAC 59.462 38.462 0.00 0.00 0.00 3.34
2194 10555 6.258160 CAACGCCTATAACTTCAAATTCTGG 58.742 40.000 0.00 0.00 0.00 3.86
2201 10562 2.026636 AGCCCAACGCCTATAACTTCAA 60.027 45.455 0.00 0.00 38.78 2.69
2218 10579 0.108424 CAGCAGACTACACAGAGCCC 60.108 60.000 0.00 0.00 0.00 5.19
2242 10603 4.006989 TGTTCCATACAGCGCTAACAATT 58.993 39.130 10.99 0.00 31.68 2.32
2265 10626 0.911769 CTGCACAATGGAGACCCCTA 59.088 55.000 0.00 0.00 38.14 3.53
2267 10628 2.048603 GCTGCACAATGGAGACCCC 61.049 63.158 1.05 0.00 38.14 4.95
2274 10635 1.443194 GCGTTCTGCTGCACAATGG 60.443 57.895 11.05 0.83 41.73 3.16
2277 10638 1.069296 GTTATGCGTTCTGCTGCACAA 60.069 47.619 0.00 0.00 45.07 3.33
2288 10649 3.118884 ACTCTTACGATGGGTTATGCGTT 60.119 43.478 0.00 0.00 38.09 4.84
2292 10653 5.009710 TCTGCTACTCTTACGATGGGTTATG 59.990 44.000 0.00 0.00 0.00 1.90
2293 10654 5.138276 TCTGCTACTCTTACGATGGGTTAT 58.862 41.667 0.00 0.00 0.00 1.89
2315 12453 5.423015 TGATTCAGAACCATAGCTGTCTTC 58.577 41.667 0.00 0.00 33.90 2.87
2322 12460 7.516198 AATACCATTGATTCAGAACCATAGC 57.484 36.000 0.00 0.00 0.00 2.97
2327 12465 7.962964 TCGATAATACCATTGATTCAGAACC 57.037 36.000 0.00 0.00 0.00 3.62
2338 12476 8.833231 ACTGAATTCGATTCGATAATACCATT 57.167 30.769 9.96 4.70 42.15 3.16
2339 12477 8.088365 TGACTGAATTCGATTCGATAATACCAT 58.912 33.333 9.96 0.00 42.15 3.55
2340 12478 7.381408 GTGACTGAATTCGATTCGATAATACCA 59.619 37.037 9.96 3.33 42.15 3.25
2341 12479 7.381408 TGTGACTGAATTCGATTCGATAATACC 59.619 37.037 9.96 0.00 42.15 2.73
2350 12488 5.106555 ACAACCATGTGACTGAATTCGATTC 60.107 40.000 0.04 0.00 38.69 2.52
2375 12513 3.629398 CCAGATCAAACCCAAGCTCATAC 59.371 47.826 0.00 0.00 0.00 2.39
2383 12521 7.122650 GTCTTGATATTTCCAGATCAAACCCAA 59.877 37.037 0.00 0.00 40.58 4.12
2403 12541 5.765176 CTCATGCAAAATCACAAGTCTTGA 58.235 37.500 19.53 0.00 0.00 3.02
2464 12602 4.558538 AATATGATTCGGTGCAGCTTTC 57.441 40.909 14.92 8.31 0.00 2.62
2523 12661 1.556911 AGTCCAGGGACAATGCAGTAG 59.443 52.381 19.92 0.00 46.76 2.57
2530 12668 1.004044 CTCAAGCAGTCCAGGGACAAT 59.996 52.381 19.92 3.07 46.76 2.71
2533 12671 1.267121 TACTCAAGCAGTCCAGGGAC 58.733 55.000 10.52 10.52 44.86 4.46
2534 12672 1.623811 GTTACTCAAGCAGTCCAGGGA 59.376 52.381 0.00 0.00 36.43 4.20
2535 12673 1.347707 TGTTACTCAAGCAGTCCAGGG 59.652 52.381 0.00 0.00 36.43 4.45
2538 12676 3.879998 TGTTTGTTACTCAAGCAGTCCA 58.120 40.909 0.00 0.00 41.10 4.02
2539 12677 4.335594 AGTTGTTTGTTACTCAAGCAGTCC 59.664 41.667 0.00 0.00 45.14 3.85
2578 12717 3.056678 AGCAAATCAAACGAATCATGCCA 60.057 39.130 0.00 0.00 33.19 4.92
2581 12720 4.796830 CCTGAGCAAATCAAACGAATCATG 59.203 41.667 0.00 0.00 37.52 3.07
2582 12721 4.460382 ACCTGAGCAAATCAAACGAATCAT 59.540 37.500 0.00 0.00 37.52 2.45
2583 12722 3.820467 ACCTGAGCAAATCAAACGAATCA 59.180 39.130 0.00 0.00 37.52 2.57
2584 12723 4.425577 ACCTGAGCAAATCAAACGAATC 57.574 40.909 0.00 0.00 37.52 2.52
2585 12724 5.616866 CGTTACCTGAGCAAATCAAACGAAT 60.617 40.000 7.26 0.00 45.80 3.34
2586 12725 4.319190 CGTTACCTGAGCAAATCAAACGAA 60.319 41.667 7.26 0.00 45.80 3.85
2591 12730 2.811431 CACCGTTACCTGAGCAAATCAA 59.189 45.455 0.00 0.00 37.52 2.57
2605 12744 1.200716 CGACTACCTGAAGCACCGTTA 59.799 52.381 0.00 0.00 0.00 3.18
2646 12805 1.271762 TGCTCTTGAATCTTGGCAGCT 60.272 47.619 0.00 0.00 0.00 4.24
2647 12806 1.135460 GTGCTCTTGAATCTTGGCAGC 60.135 52.381 0.00 0.00 0.00 5.25
2650 12809 0.179179 GCGTGCTCTTGAATCTTGGC 60.179 55.000 0.00 0.00 0.00 4.52
2686 12851 9.811995 ATTTTCATATGCTACTAGTCGTTACAA 57.188 29.630 0.00 0.00 0.00 2.41
2692 12857 9.855361 CTTCAAATTTTCATATGCTACTAGTCG 57.145 33.333 0.00 0.00 0.00 4.18
2727 12897 9.343539 GTAAAGCCCTTCTGTTCAGAAATATAT 57.656 33.333 14.76 4.86 0.00 0.86
2735 12905 4.878397 CCATAGTAAAGCCCTTCTGTTCAG 59.122 45.833 0.00 0.00 0.00 3.02
2745 12915 4.380550 GCACTGTTTTCCATAGTAAAGCCC 60.381 45.833 0.00 0.00 0.00 5.19
2755 12925 4.523943 TGCAGATAAAGCACTGTTTTCCAT 59.476 37.500 0.00 0.00 37.02 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.