Multiple sequence alignment - TraesCS5D01G236300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G236300 chr5D 100.000 4532 0 0 1 4532 344828376 344832907 0.000000e+00 8370.0
1 TraesCS5D01G236300 chr5B 98.003 2053 32 3 986 3038 406934894 406932851 0.000000e+00 3555.0
2 TraesCS5D01G236300 chr5B 96.443 1518 30 5 3035 4532 406931622 406930109 0.000000e+00 2483.0
3 TraesCS5D01G236300 chr5B 91.294 402 15 9 578 971 406935243 406934854 8.630000e-147 531.0
4 TraesCS5D01G236300 chr5B 91.081 370 31 2 201 570 406941201 406940834 2.430000e-137 499.0
5 TraesCS5D01G236300 chr7A 85.310 1661 208 21 976 2614 16645348 16643702 0.000000e+00 1683.0
6 TraesCS5D01G236300 chr7A 80.530 981 131 34 2679 3620 16643706 16642747 0.000000e+00 699.0
7 TraesCS5D01G236300 chr7D 85.467 1617 205 17 1020 2614 17253089 17251481 0.000000e+00 1657.0
8 TraesCS5D01G236300 chr7D 81.006 974 136 27 2679 3620 17251485 17250529 0.000000e+00 728.0
9 TraesCS5D01G236300 chr7D 82.836 268 41 5 1 264 6449466 6449200 7.580000e-58 235.0
10 TraesCS5D01G236300 chr4A 83.498 1624 221 25 1002 2614 717018668 717020255 0.000000e+00 1471.0
11 TraesCS5D01G236300 chr4A 82.320 1612 235 33 1010 2611 676538014 676536443 0.000000e+00 1352.0
12 TraesCS5D01G236300 chr4A 78.429 1006 164 28 2667 3630 717020242 717021236 1.390000e-169 606.0
13 TraesCS5D01G236300 chr4A 77.301 815 127 33 2680 3480 676536446 676535676 1.170000e-115 427.0
14 TraesCS5D01G236300 chr2D 86.842 266 33 2 1 265 220342229 220342493 3.430000e-76 296.0
15 TraesCS5D01G236300 chr2D 81.818 264 42 6 1 262 445040290 445040031 2.750000e-52 217.0
16 TraesCS5D01G236300 chr2D 80.608 263 44 6 1 262 308680063 308680319 3.580000e-46 196.0
17 TraesCS5D01G236300 chr2D 79.848 263 47 5 1 262 308676625 308676882 2.150000e-43 187.0
18 TraesCS5D01G236300 chr3B 86.842 266 31 4 2 264 542750878 542750614 1.230000e-75 294.0
19 TraesCS5D01G236300 chr3D 85.393 267 35 4 1 264 416485516 416485251 1.610000e-69 274.0
20 TraesCS5D01G236300 chr2A 82.692 260 40 5 1 259 389510245 389510500 4.560000e-55 226.0
21 TraesCS5D01G236300 chr6B 82.328 232 36 5 42 269 260121056 260120826 3.580000e-46 196.0
22 TraesCS5D01G236300 chr3A 93.333 45 3 0 2063 2107 749611967 749611923 2.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G236300 chr5D 344828376 344832907 4531 False 8370.000000 8370 100.000000 1 4532 1 chr5D.!!$F1 4531
1 TraesCS5D01G236300 chr5B 406930109 406935243 5134 True 2189.666667 3555 95.246667 578 4532 3 chr5B.!!$R2 3954
2 TraesCS5D01G236300 chr7A 16642747 16645348 2601 True 1191.000000 1683 82.920000 976 3620 2 chr7A.!!$R1 2644
3 TraesCS5D01G236300 chr7D 17250529 17253089 2560 True 1192.500000 1657 83.236500 1020 3620 2 chr7D.!!$R2 2600
4 TraesCS5D01G236300 chr4A 717018668 717021236 2568 False 1038.500000 1471 80.963500 1002 3630 2 chr4A.!!$F1 2628
5 TraesCS5D01G236300 chr4A 676535676 676538014 2338 True 889.500000 1352 79.810500 1010 3480 2 chr4A.!!$R1 2470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 554 0.034477 GGAAATGGGGATCACCACGT 60.034 55.0 21.81 10.34 44.72 4.49 F
555 556 0.323360 AAATGGGGATCACCACGTGG 60.323 55.0 32.83 32.83 44.72 4.94 F
561 562 0.541863 GGATCACCACGTGGAGGATT 59.458 55.0 40.21 22.84 38.94 3.01 F
566 567 0.815734 ACCACGTGGAGGATTAGACG 59.184 55.0 40.21 10.03 38.94 4.18 F
567 568 1.100510 CCACGTGGAGGATTAGACGA 58.899 55.0 31.31 0.00 37.39 4.20 F
3004 3065 1.024046 CATTGTCGCCGGAATGGTCA 61.024 55.0 5.05 0.00 41.21 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2251 0.389296 CGCCGTGTGTGATCCTGTTA 60.389 55.000 0.00 0.0 0.00 2.41 R
2379 2410 1.714541 ATCTCATCGCCATCTCCACT 58.285 50.000 0.00 0.0 0.00 4.00 R
2631 2665 1.000955 TGAGCCGAGTTCTCCAACTTC 59.999 52.381 0.00 0.0 43.37 3.01 R
2632 2666 1.048601 TGAGCCGAGTTCTCCAACTT 58.951 50.000 0.00 0.0 43.37 2.66 R
3100 4411 1.267806 GCATGGTTTGTGGACTGTCTG 59.732 52.381 7.85 0.0 0.00 3.51 R
4450 5798 7.817478 ACGACATAGAAACAACATGATTACTGA 59.183 33.333 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.870633 GCCTCCACCGTCTATATAAGG 57.129 52.381 0.00 0.00 0.00 2.69
21 22 2.496470 GCCTCCACCGTCTATATAAGGG 59.504 54.545 0.00 3.90 0.00 3.95
22 23 3.097614 CCTCCACCGTCTATATAAGGGG 58.902 54.545 4.29 0.35 0.00 4.79
23 24 3.245514 CCTCCACCGTCTATATAAGGGGA 60.246 52.174 3.18 5.87 0.00 4.81
24 25 4.017808 CTCCACCGTCTATATAAGGGGAG 58.982 52.174 14.43 14.43 36.03 4.30
25 26 3.097614 CCACCGTCTATATAAGGGGAGG 58.902 54.545 3.18 0.36 0.00 4.30
26 27 2.496470 CACCGTCTATATAAGGGGAGGC 59.504 54.545 4.29 0.00 0.00 4.70
27 28 2.108970 CCGTCTATATAAGGGGAGGCC 58.891 57.143 0.00 0.00 0.00 5.19
28 29 2.559026 CCGTCTATATAAGGGGAGGCCA 60.559 54.545 5.01 0.00 0.00 5.36
29 30 2.761208 CGTCTATATAAGGGGAGGCCAG 59.239 54.545 5.01 0.00 0.00 4.85
30 31 3.108376 GTCTATATAAGGGGAGGCCAGG 58.892 54.545 5.01 0.00 0.00 4.45
31 32 3.008398 TCTATATAAGGGGAGGCCAGGA 58.992 50.000 5.01 0.00 0.00 3.86
32 33 2.350863 ATATAAGGGGAGGCCAGGAG 57.649 55.000 5.01 0.00 0.00 3.69
33 34 1.251136 TATAAGGGGAGGCCAGGAGA 58.749 55.000 5.01 0.00 0.00 3.71
34 35 0.400670 ATAAGGGGAGGCCAGGAGAC 60.401 60.000 5.01 0.00 0.00 3.36
35 36 2.547123 TAAGGGGAGGCCAGGAGACC 62.547 65.000 5.01 0.00 0.00 3.85
36 37 4.423209 GGGGAGGCCAGGAGACCT 62.423 72.222 5.01 0.00 39.65 3.85
37 38 2.285743 GGGAGGCCAGGAGACCTT 60.286 66.667 5.01 0.00 36.05 3.50
38 39 2.371259 GGGAGGCCAGGAGACCTTC 61.371 68.421 5.01 0.00 36.05 3.46
39 40 1.613630 GGAGGCCAGGAGACCTTCA 60.614 63.158 5.01 0.00 36.05 3.02
40 41 1.599576 GAGGCCAGGAGACCTTCAC 59.400 63.158 5.01 0.00 36.05 3.18
41 42 2.232298 GAGGCCAGGAGACCTTCACG 62.232 65.000 5.01 0.00 36.05 4.35
42 43 2.283529 GGCCAGGAGACCTTCACGA 61.284 63.158 0.00 0.00 0.00 4.35
43 44 1.617947 GGCCAGGAGACCTTCACGAT 61.618 60.000 0.00 0.00 0.00 3.73
44 45 0.179097 GCCAGGAGACCTTCACGATC 60.179 60.000 0.00 0.00 0.00 3.69
45 46 1.186200 CCAGGAGACCTTCACGATCA 58.814 55.000 0.00 0.00 0.00 2.92
46 47 1.759445 CCAGGAGACCTTCACGATCAT 59.241 52.381 0.00 0.00 0.00 2.45
47 48 2.223923 CCAGGAGACCTTCACGATCATC 60.224 54.545 0.00 0.00 0.00 2.92
48 49 2.692557 CAGGAGACCTTCACGATCATCT 59.307 50.000 0.00 0.00 0.00 2.90
49 50 3.885901 CAGGAGACCTTCACGATCATCTA 59.114 47.826 0.00 0.00 0.00 1.98
50 51 4.522405 CAGGAGACCTTCACGATCATCTAT 59.478 45.833 0.00 0.00 0.00 1.98
51 52 5.010516 CAGGAGACCTTCACGATCATCTATT 59.989 44.000 0.00 0.00 0.00 1.73
52 53 5.242838 AGGAGACCTTCACGATCATCTATTC 59.757 44.000 0.00 0.00 0.00 1.75
53 54 5.242838 GGAGACCTTCACGATCATCTATTCT 59.757 44.000 0.00 0.00 0.00 2.40
54 55 6.239176 GGAGACCTTCACGATCATCTATTCTT 60.239 42.308 0.00 0.00 0.00 2.52
55 56 7.040340 GGAGACCTTCACGATCATCTATTCTTA 60.040 40.741 0.00 0.00 0.00 2.10
56 57 7.881142 AGACCTTCACGATCATCTATTCTTAG 58.119 38.462 0.00 0.00 0.00 2.18
57 58 7.721842 AGACCTTCACGATCATCTATTCTTAGA 59.278 37.037 0.00 0.00 38.79 2.10
58 59 8.415950 ACCTTCACGATCATCTATTCTTAGAT 57.584 34.615 0.00 0.00 44.39 1.98
59 60 9.521841 ACCTTCACGATCATCTATTCTTAGATA 57.478 33.333 0.00 0.00 42.17 1.98
76 77 8.678593 TCTTAGATAGAAAACTCTCGATAGCA 57.321 34.615 0.00 0.00 0.00 3.49
77 78 9.121658 TCTTAGATAGAAAACTCTCGATAGCAA 57.878 33.333 0.00 0.00 0.00 3.91
78 79 9.906660 CTTAGATAGAAAACTCTCGATAGCAAT 57.093 33.333 0.00 0.00 0.00 3.56
79 80 9.900710 TTAGATAGAAAACTCTCGATAGCAATC 57.099 33.333 0.00 0.00 0.00 2.67
80 81 8.177119 AGATAGAAAACTCTCGATAGCAATCT 57.823 34.615 0.00 2.15 0.00 2.40
81 82 8.637986 AGATAGAAAACTCTCGATAGCAATCTT 58.362 33.333 0.00 0.00 0.00 2.40
82 83 9.900710 GATAGAAAACTCTCGATAGCAATCTTA 57.099 33.333 0.00 0.00 0.00 2.10
85 86 9.685828 AGAAAACTCTCGATAGCAATCTTATAC 57.314 33.333 0.00 0.00 0.00 1.47
86 87 9.464714 GAAAACTCTCGATAGCAATCTTATACA 57.535 33.333 0.00 0.00 0.00 2.29
87 88 8.804688 AAACTCTCGATAGCAATCTTATACAC 57.195 34.615 0.00 0.00 0.00 2.90
88 89 6.915349 ACTCTCGATAGCAATCTTATACACC 58.085 40.000 0.00 0.00 0.00 4.16
89 90 6.490381 ACTCTCGATAGCAATCTTATACACCA 59.510 38.462 0.00 0.00 0.00 4.17
90 91 7.177568 ACTCTCGATAGCAATCTTATACACCAT 59.822 37.037 0.00 0.00 0.00 3.55
91 92 7.896811 TCTCGATAGCAATCTTATACACCATT 58.103 34.615 0.00 0.00 0.00 3.16
92 93 7.814587 TCTCGATAGCAATCTTATACACCATTG 59.185 37.037 0.00 0.00 0.00 2.82
93 94 7.441836 TCGATAGCAATCTTATACACCATTGT 58.558 34.615 0.00 0.00 40.02 2.71
94 95 8.581578 TCGATAGCAATCTTATACACCATTGTA 58.418 33.333 0.00 0.00 42.53 2.41
95 96 8.864024 CGATAGCAATCTTATACACCATTGTAG 58.136 37.037 0.00 0.00 41.62 2.74
96 97 6.867662 AGCAATCTTATACACCATTGTAGC 57.132 37.500 0.00 0.00 41.62 3.58
97 98 5.765182 AGCAATCTTATACACCATTGTAGCC 59.235 40.000 0.00 0.00 41.62 3.93
98 99 5.765182 GCAATCTTATACACCATTGTAGCCT 59.235 40.000 0.00 0.00 41.62 4.58
99 100 6.263168 GCAATCTTATACACCATTGTAGCCTT 59.737 38.462 0.00 0.00 41.62 4.35
100 101 7.520614 GCAATCTTATACACCATTGTAGCCTTC 60.521 40.741 0.00 0.00 41.62 3.46
101 102 5.925509 TCTTATACACCATTGTAGCCTTCC 58.074 41.667 0.00 0.00 41.62 3.46
102 103 3.577805 ATACACCATTGTAGCCTTCCC 57.422 47.619 0.00 0.00 41.62 3.97
103 104 1.072266 ACACCATTGTAGCCTTCCCA 58.928 50.000 0.00 0.00 32.60 4.37
104 105 1.271926 ACACCATTGTAGCCTTCCCAC 60.272 52.381 0.00 0.00 32.60 4.61
105 106 0.035439 ACCATTGTAGCCTTCCCACG 60.035 55.000 0.00 0.00 0.00 4.94
106 107 0.251916 CCATTGTAGCCTTCCCACGA 59.748 55.000 0.00 0.00 0.00 4.35
107 108 1.656652 CATTGTAGCCTTCCCACGAG 58.343 55.000 0.00 0.00 0.00 4.18
108 109 0.541863 ATTGTAGCCTTCCCACGAGG 59.458 55.000 0.00 0.00 37.35 4.63
109 110 0.834687 TTGTAGCCTTCCCACGAGGT 60.835 55.000 0.00 0.00 36.63 3.85
110 111 0.040058 TGTAGCCTTCCCACGAGGTA 59.960 55.000 0.00 0.00 36.63 3.08
111 112 1.342674 TGTAGCCTTCCCACGAGGTAT 60.343 52.381 0.00 0.00 36.63 2.73
112 113 1.761198 GTAGCCTTCCCACGAGGTATT 59.239 52.381 0.00 0.00 36.63 1.89
113 114 0.831307 AGCCTTCCCACGAGGTATTC 59.169 55.000 0.00 0.00 36.63 1.75
114 115 0.179054 GCCTTCCCACGAGGTATTCC 60.179 60.000 0.00 0.00 36.63 3.01
129 130 6.192970 AGGTATTCCTCCACCATGAATAAG 57.807 41.667 0.00 0.00 40.58 1.73
130 131 4.762251 GGTATTCCTCCACCATGAATAAGC 59.238 45.833 0.00 0.00 33.94 3.09
131 132 4.524802 ATTCCTCCACCATGAATAAGCA 57.475 40.909 0.00 0.00 0.00 3.91
132 133 4.314522 TTCCTCCACCATGAATAAGCAA 57.685 40.909 0.00 0.00 0.00 3.91
133 134 4.524802 TCCTCCACCATGAATAAGCAAT 57.475 40.909 0.00 0.00 0.00 3.56
134 135 5.645056 TCCTCCACCATGAATAAGCAATA 57.355 39.130 0.00 0.00 0.00 1.90
135 136 5.376625 TCCTCCACCATGAATAAGCAATAC 58.623 41.667 0.00 0.00 0.00 1.89
136 137 5.104151 TCCTCCACCATGAATAAGCAATACA 60.104 40.000 0.00 0.00 0.00 2.29
137 138 5.593909 CCTCCACCATGAATAAGCAATACAA 59.406 40.000 0.00 0.00 0.00 2.41
138 139 6.238842 CCTCCACCATGAATAAGCAATACAAG 60.239 42.308 0.00 0.00 0.00 3.16
139 140 6.186957 TCCACCATGAATAAGCAATACAAGT 58.813 36.000 0.00 0.00 0.00 3.16
140 141 7.342581 TCCACCATGAATAAGCAATACAAGTA 58.657 34.615 0.00 0.00 0.00 2.24
141 142 7.498900 TCCACCATGAATAAGCAATACAAGTAG 59.501 37.037 0.00 0.00 0.00 2.57
142 143 7.255242 CCACCATGAATAAGCAATACAAGTAGG 60.255 40.741 0.00 0.00 0.00 3.18
143 144 7.498900 CACCATGAATAAGCAATACAAGTAGGA 59.501 37.037 0.00 0.00 0.00 2.94
144 145 8.220559 ACCATGAATAAGCAATACAAGTAGGAT 58.779 33.333 0.00 0.00 0.00 3.24
145 146 8.509690 CCATGAATAAGCAATACAAGTAGGATG 58.490 37.037 0.00 0.00 0.00 3.51
146 147 9.060347 CATGAATAAGCAATACAAGTAGGATGT 57.940 33.333 0.00 0.00 34.81 3.06
148 149 9.764363 TGAATAAGCAATACAAGTAGGATGTAG 57.236 33.333 0.00 0.00 36.75 2.74
149 150 9.209175 GAATAAGCAATACAAGTAGGATGTAGG 57.791 37.037 0.00 0.00 36.75 3.18
150 151 5.552870 AGCAATACAAGTAGGATGTAGGG 57.447 43.478 0.00 0.00 36.75 3.53
151 152 4.969359 AGCAATACAAGTAGGATGTAGGGT 59.031 41.667 0.00 0.00 36.75 4.34
152 153 6.141083 AGCAATACAAGTAGGATGTAGGGTA 58.859 40.000 0.00 0.00 36.75 3.69
153 154 6.787957 AGCAATACAAGTAGGATGTAGGGTAT 59.212 38.462 0.00 0.00 36.75 2.73
154 155 7.292591 AGCAATACAAGTAGGATGTAGGGTATT 59.707 37.037 0.00 0.00 36.75 1.89
155 156 8.591072 GCAATACAAGTAGGATGTAGGGTATTA 58.409 37.037 0.00 0.00 36.75 0.98
156 157 9.924650 CAATACAAGTAGGATGTAGGGTATTAC 57.075 37.037 0.00 0.00 36.75 1.89
157 158 9.893975 AATACAAGTAGGATGTAGGGTATTACT 57.106 33.333 0.00 0.00 36.75 2.24
158 159 7.836479 ACAAGTAGGATGTAGGGTATTACTC 57.164 40.000 0.00 0.00 0.00 2.59
159 160 7.593653 ACAAGTAGGATGTAGGGTATTACTCT 58.406 38.462 1.08 1.08 31.14 3.24
160 161 8.066247 ACAAGTAGGATGTAGGGTATTACTCTT 58.934 37.037 0.60 0.00 27.79 2.85
161 162 8.578151 CAAGTAGGATGTAGGGTATTACTCTTC 58.422 40.741 0.60 0.00 27.79 2.87
162 163 6.941436 AGTAGGATGTAGGGTATTACTCTTCG 59.059 42.308 0.60 0.00 27.79 3.79
163 164 5.078256 AGGATGTAGGGTATTACTCTTCGG 58.922 45.833 0.60 0.00 27.79 4.30
164 165 4.321824 GGATGTAGGGTATTACTCTTCGGC 60.322 50.000 0.60 0.00 27.79 5.54
165 166 3.907221 TGTAGGGTATTACTCTTCGGCT 58.093 45.455 0.60 0.00 27.79 5.52
166 167 3.635373 TGTAGGGTATTACTCTTCGGCTG 59.365 47.826 0.60 0.00 27.79 4.85
167 168 2.748388 AGGGTATTACTCTTCGGCTGT 58.252 47.619 0.00 0.00 0.00 4.40
168 169 2.694109 AGGGTATTACTCTTCGGCTGTC 59.306 50.000 0.00 0.00 0.00 3.51
169 170 2.223994 GGGTATTACTCTTCGGCTGTCC 60.224 54.545 0.00 0.00 0.00 4.02
179 180 3.637273 GGCTGTCCGAACCTGGGT 61.637 66.667 0.00 0.00 0.00 4.51
180 181 2.288025 GGCTGTCCGAACCTGGGTA 61.288 63.158 0.00 0.00 0.00 3.69
181 182 1.675219 GCTGTCCGAACCTGGGTAA 59.325 57.895 0.00 0.00 0.00 2.85
182 183 0.035739 GCTGTCCGAACCTGGGTAAA 59.964 55.000 0.00 0.00 0.00 2.01
183 184 1.543871 GCTGTCCGAACCTGGGTAAAA 60.544 52.381 0.00 0.00 0.00 1.52
184 185 2.148768 CTGTCCGAACCTGGGTAAAAC 58.851 52.381 0.00 0.00 0.00 2.43
185 186 1.202794 TGTCCGAACCTGGGTAAAACC 60.203 52.381 0.00 0.00 37.60 3.27
203 204 3.997672 CCTTGTGGGATCTCCGATC 57.002 57.895 0.00 0.00 38.76 3.69
204 205 1.418334 CCTTGTGGGATCTCCGATCT 58.582 55.000 4.10 0.00 38.76 2.75
205 206 2.598565 CCTTGTGGGATCTCCGATCTA 58.401 52.381 4.10 0.00 38.76 1.98
206 207 2.965831 CCTTGTGGGATCTCCGATCTAA 59.034 50.000 4.10 0.00 38.76 2.10
207 208 3.006323 CCTTGTGGGATCTCCGATCTAAG 59.994 52.174 4.10 4.64 38.76 2.18
208 209 3.595190 TGTGGGATCTCCGATCTAAGA 57.405 47.619 4.10 0.00 38.76 2.10
209 210 3.223435 TGTGGGATCTCCGATCTAAGAC 58.777 50.000 4.10 0.00 38.76 3.01
210 211 3.117474 TGTGGGATCTCCGATCTAAGACT 60.117 47.826 4.10 0.00 38.76 3.24
211 212 3.892588 GTGGGATCTCCGATCTAAGACTT 59.107 47.826 4.10 0.00 38.76 3.01
212 213 4.022676 GTGGGATCTCCGATCTAAGACTTC 60.023 50.000 0.00 0.00 38.76 3.01
213 214 3.508402 GGGATCTCCGATCTAAGACTTCC 59.492 52.174 0.00 0.00 36.71 3.46
214 215 4.145807 GGATCTCCGATCTAAGACTTCCA 58.854 47.826 0.00 0.00 0.00 3.53
215 216 4.217550 GGATCTCCGATCTAAGACTTCCAG 59.782 50.000 0.00 0.00 0.00 3.86
216 217 2.952978 TCTCCGATCTAAGACTTCCAGC 59.047 50.000 0.00 0.00 0.00 4.85
217 218 2.955660 CTCCGATCTAAGACTTCCAGCT 59.044 50.000 0.00 0.00 0.00 4.24
218 219 2.690497 TCCGATCTAAGACTTCCAGCTG 59.310 50.000 6.78 6.78 0.00 4.24
219 220 2.468831 CGATCTAAGACTTCCAGCTGC 58.531 52.381 8.66 0.00 0.00 5.25
220 221 2.468831 GATCTAAGACTTCCAGCTGCG 58.531 52.381 8.66 1.56 0.00 5.18
221 222 0.108615 TCTAAGACTTCCAGCTGCGC 60.109 55.000 8.66 0.00 0.00 6.09
222 223 0.108424 CTAAGACTTCCAGCTGCGCT 60.108 55.000 8.66 0.00 40.77 5.92
223 224 0.321671 TAAGACTTCCAGCTGCGCTT 59.678 50.000 8.66 8.80 36.40 4.68
224 225 1.233285 AAGACTTCCAGCTGCGCTTG 61.233 55.000 8.66 4.45 36.40 4.01
225 226 2.670934 ACTTCCAGCTGCGCTTGG 60.671 61.111 8.66 14.16 36.40 3.61
226 227 2.359107 CTTCCAGCTGCGCTTGGA 60.359 61.111 20.03 20.03 36.40 3.53
227 228 2.669569 TTCCAGCTGCGCTTGGAC 60.670 61.111 22.52 3.48 36.40 4.02
228 229 4.704833 TCCAGCTGCGCTTGGACC 62.705 66.667 20.03 0.00 36.40 4.46
229 230 4.711949 CCAGCTGCGCTTGGACCT 62.712 66.667 17.58 0.00 36.40 3.85
230 231 3.429141 CAGCTGCGCTTGGACCTG 61.429 66.667 9.73 2.15 36.40 4.00
231 232 3.946201 AGCTGCGCTTGGACCTGT 61.946 61.111 9.73 0.00 33.89 4.00
232 233 2.047274 GCTGCGCTTGGACCTGTA 60.047 61.111 9.73 0.00 0.00 2.74
233 234 2.391389 GCTGCGCTTGGACCTGTAC 61.391 63.158 9.73 0.00 0.00 2.90
234 235 1.741770 CTGCGCTTGGACCTGTACC 60.742 63.158 9.73 0.00 0.00 3.34
235 236 2.813908 GCGCTTGGACCTGTACCG 60.814 66.667 0.00 0.00 0.00 4.02
236 237 2.967397 CGCTTGGACCTGTACCGA 59.033 61.111 0.00 0.00 0.00 4.69
237 238 1.153823 CGCTTGGACCTGTACCGAG 60.154 63.158 0.00 0.00 40.75 4.63
238 239 1.218316 GCTTGGACCTGTACCGAGG 59.782 63.158 0.00 0.00 38.85 4.63
239 240 1.898154 CTTGGACCTGTACCGAGGG 59.102 63.158 4.40 0.00 37.45 4.30
240 241 0.613853 CTTGGACCTGTACCGAGGGA 60.614 60.000 4.40 0.00 37.45 4.20
241 242 0.042131 TTGGACCTGTACCGAGGGAT 59.958 55.000 4.40 0.00 37.45 3.85
242 243 0.396695 TGGACCTGTACCGAGGGATC 60.397 60.000 4.40 0.00 37.45 3.36
243 244 0.106116 GGACCTGTACCGAGGGATCT 60.106 60.000 4.40 0.00 37.45 2.75
244 245 1.033574 GACCTGTACCGAGGGATCTG 58.966 60.000 4.40 0.00 37.45 2.90
245 246 0.629596 ACCTGTACCGAGGGATCTGA 59.370 55.000 4.40 0.00 37.45 3.27
246 247 1.033574 CCTGTACCGAGGGATCTGAC 58.966 60.000 0.00 0.00 0.00 3.51
247 248 0.663688 CTGTACCGAGGGATCTGACG 59.336 60.000 0.00 0.00 0.00 4.35
250 251 4.573210 CCGAGGGATCTGACGGTA 57.427 61.111 13.63 0.00 40.42 4.02
251 252 3.037941 CCGAGGGATCTGACGGTAT 57.962 57.895 13.63 0.00 40.42 2.73
252 253 1.329256 CCGAGGGATCTGACGGTATT 58.671 55.000 13.63 0.00 40.42 1.89
253 254 1.687123 CCGAGGGATCTGACGGTATTT 59.313 52.381 13.63 0.00 40.42 1.40
254 255 2.102588 CCGAGGGATCTGACGGTATTTT 59.897 50.000 13.63 0.00 40.42 1.82
255 256 3.123804 CGAGGGATCTGACGGTATTTTG 58.876 50.000 0.00 0.00 0.00 2.44
256 257 2.872858 GAGGGATCTGACGGTATTTTGC 59.127 50.000 0.00 0.00 0.00 3.68
257 258 2.238646 AGGGATCTGACGGTATTTTGCA 59.761 45.455 0.00 0.00 0.00 4.08
258 259 2.354821 GGGATCTGACGGTATTTTGCAC 59.645 50.000 0.00 0.00 0.00 4.57
259 260 2.354821 GGATCTGACGGTATTTTGCACC 59.645 50.000 0.00 0.00 0.00 5.01
265 266 3.668641 GGTATTTTGCACCGTCACG 57.331 52.632 0.00 0.00 0.00 4.35
266 267 0.869730 GGTATTTTGCACCGTCACGT 59.130 50.000 0.00 0.00 0.00 4.49
267 268 1.399215 GGTATTTTGCACCGTCACGTG 60.399 52.381 9.94 9.94 36.80 4.49
268 269 0.869068 TATTTTGCACCGTCACGTGG 59.131 50.000 17.00 1.58 34.16 4.94
269 270 1.098712 ATTTTGCACCGTCACGTGGT 61.099 50.000 17.00 2.35 41.47 4.16
270 271 0.461516 TTTTGCACCGTCACGTGGTA 60.462 50.000 17.00 0.00 37.72 3.25
271 272 1.152989 TTTGCACCGTCACGTGGTAC 61.153 55.000 17.00 6.51 37.72 3.34
272 273 2.018727 TTGCACCGTCACGTGGTACT 62.019 55.000 17.00 0.00 37.72 2.73
273 274 2.019951 GCACCGTCACGTGGTACTG 61.020 63.158 17.00 6.49 37.72 2.74
274 275 1.372499 CACCGTCACGTGGTACTGG 60.372 63.158 17.00 14.45 37.72 4.00
275 276 1.529010 ACCGTCACGTGGTACTGGA 60.529 57.895 17.00 0.00 38.15 3.86
276 277 1.108727 ACCGTCACGTGGTACTGGAA 61.109 55.000 17.00 0.00 38.15 3.53
277 278 0.665369 CCGTCACGTGGTACTGGAAC 60.665 60.000 17.00 2.52 0.00 3.62
278 279 0.665369 CGTCACGTGGTACTGGAACC 60.665 60.000 17.00 0.00 40.19 3.62
279 280 0.665369 GTCACGTGGTACTGGAACCG 60.665 60.000 17.00 0.00 42.91 4.44
280 281 0.822944 TCACGTGGTACTGGAACCGA 60.823 55.000 17.00 0.00 42.91 4.69
281 282 0.245539 CACGTGGTACTGGAACCGAT 59.754 55.000 7.95 0.00 42.91 4.18
282 283 0.245539 ACGTGGTACTGGAACCGATG 59.754 55.000 0.00 0.00 42.91 3.84
283 284 0.528924 CGTGGTACTGGAACCGATGA 59.471 55.000 0.00 0.00 42.91 2.92
284 285 1.469251 CGTGGTACTGGAACCGATGAG 60.469 57.143 0.00 0.00 42.91 2.90
285 286 1.822990 GTGGTACTGGAACCGATGAGA 59.177 52.381 0.00 0.00 42.91 3.27
286 287 1.822990 TGGTACTGGAACCGATGAGAC 59.177 52.381 0.00 0.00 42.91 3.36
287 288 1.822990 GGTACTGGAACCGATGAGACA 59.177 52.381 0.00 0.00 0.00 3.41
288 289 2.431057 GGTACTGGAACCGATGAGACAT 59.569 50.000 0.00 0.00 0.00 3.06
289 290 3.635373 GGTACTGGAACCGATGAGACATA 59.365 47.826 0.00 0.00 0.00 2.29
290 291 4.261656 GGTACTGGAACCGATGAGACATAG 60.262 50.000 0.00 0.00 0.00 2.23
291 292 3.366396 ACTGGAACCGATGAGACATAGT 58.634 45.455 0.00 0.00 0.00 2.12
292 293 3.131223 ACTGGAACCGATGAGACATAGTG 59.869 47.826 0.00 0.00 0.00 2.74
293 294 2.159099 TGGAACCGATGAGACATAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
294 295 2.101582 GGAACCGATGAGACATAGTGCT 59.898 50.000 0.00 0.00 0.00 4.40
295 296 2.879002 ACCGATGAGACATAGTGCTG 57.121 50.000 0.00 0.00 0.00 4.41
296 297 1.202463 ACCGATGAGACATAGTGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
297 298 1.202452 CCGATGAGACATAGTGCTGCA 60.202 52.381 0.00 0.00 0.00 4.41
298 299 2.543641 CGATGAGACATAGTGCTGCAA 58.456 47.619 2.77 0.00 0.00 4.08
299 300 2.283617 CGATGAGACATAGTGCTGCAAC 59.716 50.000 2.77 0.00 0.00 4.17
300 301 3.529533 GATGAGACATAGTGCTGCAACT 58.470 45.455 2.77 6.94 0.00 3.16
301 302 2.691927 TGAGACATAGTGCTGCAACTG 58.308 47.619 2.77 4.84 0.00 3.16
302 303 2.005451 GAGACATAGTGCTGCAACTGG 58.995 52.381 2.77 4.41 0.00 4.00
303 304 0.449388 GACATAGTGCTGCAACTGGC 59.551 55.000 2.77 0.11 45.13 4.85
304 305 0.037303 ACATAGTGCTGCAACTGGCT 59.963 50.000 2.77 0.00 45.15 4.75
305 306 0.450583 CATAGTGCTGCAACTGGCTG 59.549 55.000 2.77 1.38 45.15 4.85
306 307 0.679002 ATAGTGCTGCAACTGGCTGG 60.679 55.000 2.77 0.00 45.15 4.85
307 308 2.753009 TAGTGCTGCAACTGGCTGGG 62.753 60.000 2.77 0.00 45.15 4.45
308 309 3.888460 TGCTGCAACTGGCTGGGA 61.888 61.111 0.00 0.00 45.15 4.37
309 310 3.060615 GCTGCAACTGGCTGGGAG 61.061 66.667 0.00 0.00 45.15 4.30
310 311 2.433446 CTGCAACTGGCTGGGAGT 59.567 61.111 0.00 0.00 45.15 3.85
311 312 1.970114 CTGCAACTGGCTGGGAGTG 60.970 63.158 0.00 0.00 45.15 3.51
312 313 2.113986 GCAACTGGCTGGGAGTGT 59.886 61.111 0.00 0.00 40.25 3.55
313 314 1.968540 GCAACTGGCTGGGAGTGTC 60.969 63.158 0.00 0.00 40.25 3.67
314 315 1.451504 CAACTGGCTGGGAGTGTCA 59.548 57.895 0.00 0.00 0.00 3.58
315 316 0.179020 CAACTGGCTGGGAGTGTCAA 60.179 55.000 0.00 0.00 0.00 3.18
316 317 0.179018 AACTGGCTGGGAGTGTCAAC 60.179 55.000 0.00 0.00 0.00 3.18
317 318 1.344953 ACTGGCTGGGAGTGTCAACA 61.345 55.000 0.00 0.00 0.00 3.33
318 319 0.179020 CTGGCTGGGAGTGTCAACAA 60.179 55.000 0.00 0.00 0.00 2.83
319 320 0.257328 TGGCTGGGAGTGTCAACAAA 59.743 50.000 0.00 0.00 0.00 2.83
320 321 1.341482 TGGCTGGGAGTGTCAACAAAA 60.341 47.619 0.00 0.00 0.00 2.44
321 322 1.754226 GGCTGGGAGTGTCAACAAAAA 59.246 47.619 0.00 0.00 0.00 1.94
322 323 2.481276 GGCTGGGAGTGTCAACAAAAAC 60.481 50.000 0.00 0.00 0.00 2.43
323 324 2.794631 GCTGGGAGTGTCAACAAAAACG 60.795 50.000 0.00 0.00 0.00 3.60
324 325 2.422127 CTGGGAGTGTCAACAAAAACGT 59.578 45.455 0.00 0.00 0.00 3.99
325 326 2.820787 TGGGAGTGTCAACAAAAACGTT 59.179 40.909 0.00 0.00 0.00 3.99
326 327 3.175929 GGGAGTGTCAACAAAAACGTTG 58.824 45.455 0.00 0.00 46.21 4.10
327 328 3.366577 GGGAGTGTCAACAAAAACGTTGT 60.367 43.478 0.00 0.00 45.28 3.32
328 329 3.606346 GGAGTGTCAACAAAAACGTTGTG 59.394 43.478 0.00 6.10 45.28 3.33
329 330 4.468643 GAGTGTCAACAAAAACGTTGTGA 58.531 39.130 16.73 6.93 45.28 3.58
330 331 4.223659 AGTGTCAACAAAAACGTTGTGAC 58.776 39.130 16.73 16.46 45.28 3.67
331 332 3.362534 GTGTCAACAAAAACGTTGTGACC 59.637 43.478 16.73 9.26 45.28 4.02
332 333 2.590712 GTCAACAAAAACGTTGTGACCG 59.409 45.455 16.73 6.60 45.28 4.79
333 334 1.914700 CAACAAAAACGTTGTGACCGG 59.085 47.619 16.73 0.00 41.12 5.28
334 335 0.179158 ACAAAAACGTTGTGACCGGC 60.179 50.000 16.73 0.00 0.00 6.13
335 336 1.062845 AAAAACGTTGTGACCGGCG 59.937 52.632 0.00 0.00 0.00 6.46
336 337 1.367599 AAAAACGTTGTGACCGGCGA 61.368 50.000 9.30 0.00 0.00 5.54
337 338 1.161563 AAAACGTTGTGACCGGCGAT 61.162 50.000 9.30 0.00 0.00 4.58
338 339 1.837538 AAACGTTGTGACCGGCGATG 61.838 55.000 9.30 0.00 0.00 3.84
339 340 2.736995 CGTTGTGACCGGCGATGT 60.737 61.111 9.30 0.00 0.00 3.06
340 341 2.314647 CGTTGTGACCGGCGATGTT 61.315 57.895 9.30 0.00 0.00 2.71
341 342 1.009903 CGTTGTGACCGGCGATGTTA 61.010 55.000 9.30 0.00 0.00 2.41
342 343 1.365699 GTTGTGACCGGCGATGTTAT 58.634 50.000 9.30 0.00 0.00 1.89
343 344 2.542597 GTTGTGACCGGCGATGTTATA 58.457 47.619 9.30 0.00 0.00 0.98
344 345 2.931325 GTTGTGACCGGCGATGTTATAA 59.069 45.455 9.30 0.00 0.00 0.98
345 346 2.816689 TGTGACCGGCGATGTTATAAG 58.183 47.619 9.30 0.00 0.00 1.73
346 347 1.525619 GTGACCGGCGATGTTATAAGC 59.474 52.381 9.30 0.00 0.00 3.09
347 348 1.411246 TGACCGGCGATGTTATAAGCT 59.589 47.619 9.30 0.00 0.00 3.74
348 349 1.792949 GACCGGCGATGTTATAAGCTG 59.207 52.381 9.30 0.00 35.87 4.24
349 350 0.512952 CCGGCGATGTTATAAGCTGC 59.487 55.000 9.30 0.00 34.86 5.25
350 351 0.161658 CGGCGATGTTATAAGCTGCG 59.838 55.000 0.00 0.00 0.00 5.18
351 352 1.497991 GGCGATGTTATAAGCTGCGA 58.502 50.000 0.00 0.00 0.00 5.10
352 353 1.864711 GGCGATGTTATAAGCTGCGAA 59.135 47.619 0.00 0.00 0.00 4.70
353 354 2.286833 GGCGATGTTATAAGCTGCGAAA 59.713 45.455 0.00 0.00 0.00 3.46
354 355 3.058914 GGCGATGTTATAAGCTGCGAAAT 60.059 43.478 0.00 0.00 0.00 2.17
355 356 4.151689 GGCGATGTTATAAGCTGCGAAATA 59.848 41.667 0.00 0.00 0.00 1.40
356 357 5.073478 GCGATGTTATAAGCTGCGAAATAC 58.927 41.667 0.00 0.00 0.00 1.89
357 358 5.298083 CGATGTTATAAGCTGCGAAATACG 58.702 41.667 0.00 0.00 45.66 3.06
358 359 5.116528 CGATGTTATAAGCTGCGAAATACGA 59.883 40.000 0.00 0.00 45.77 3.43
359 360 6.345487 CGATGTTATAAGCTGCGAAATACGAA 60.345 38.462 0.00 0.00 45.77 3.85
360 361 6.650239 TGTTATAAGCTGCGAAATACGAAA 57.350 33.333 0.00 0.00 45.77 3.46
361 362 6.701937 TGTTATAAGCTGCGAAATACGAAAG 58.298 36.000 0.00 0.00 45.77 2.62
362 363 4.795970 ATAAGCTGCGAAATACGAAAGG 57.204 40.909 0.00 0.00 45.77 3.11
363 364 2.094762 AGCTGCGAAATACGAAAGGT 57.905 45.000 0.00 0.00 45.77 3.50
364 365 2.423577 AGCTGCGAAATACGAAAGGTT 58.576 42.857 0.00 0.00 45.77 3.50
365 366 3.592059 AGCTGCGAAATACGAAAGGTTA 58.408 40.909 0.00 0.00 45.77 2.85
366 367 4.189231 AGCTGCGAAATACGAAAGGTTAT 58.811 39.130 0.00 0.00 45.77 1.89
367 368 4.034048 AGCTGCGAAATACGAAAGGTTATG 59.966 41.667 0.00 0.00 45.77 1.90
368 369 4.267357 TGCGAAATACGAAAGGTTATGC 57.733 40.909 0.00 0.00 45.77 3.14
369 370 3.936453 TGCGAAATACGAAAGGTTATGCT 59.064 39.130 0.00 0.00 45.77 3.79
370 371 4.201773 TGCGAAATACGAAAGGTTATGCTG 60.202 41.667 0.00 0.00 45.77 4.41
371 372 4.271687 CGAAATACGAAAGGTTATGCTGC 58.728 43.478 0.00 0.00 45.77 5.25
372 373 4.201773 CGAAATACGAAAGGTTATGCTGCA 60.202 41.667 4.13 4.13 45.77 4.41
373 374 5.636837 GAAATACGAAAGGTTATGCTGCAA 58.363 37.500 6.36 0.00 0.00 4.08
374 375 5.835113 AATACGAAAGGTTATGCTGCAAT 57.165 34.783 6.36 0.00 0.00 3.56
375 376 5.835113 ATACGAAAGGTTATGCTGCAATT 57.165 34.783 6.36 0.00 0.00 2.32
376 377 3.836949 ACGAAAGGTTATGCTGCAATTG 58.163 40.909 6.36 0.00 0.00 2.32
377 378 2.599973 CGAAAGGTTATGCTGCAATTGC 59.400 45.455 23.69 23.69 42.50 3.56
378 379 2.282701 AAGGTTATGCTGCAATTGCG 57.717 45.000 24.58 19.32 45.83 4.85
385 386 2.956194 CTGCAATTGCGGCTGTGA 59.044 55.556 25.49 5.27 45.83 3.58
386 387 1.443194 CTGCAATTGCGGCTGTGAC 60.443 57.895 25.49 0.00 45.83 3.67
387 388 2.502510 GCAATTGCGGCTGTGACG 60.503 61.111 15.87 0.00 36.98 4.35
388 389 2.176546 CAATTGCGGCTGTGACGG 59.823 61.111 0.00 0.00 32.98 4.79
389 390 2.031919 AATTGCGGCTGTGACGGA 59.968 55.556 0.00 0.00 32.98 4.69
391 392 2.203084 TTGCGGCTGTGACGGAAA 60.203 55.556 0.00 0.00 42.21 3.13
392 393 1.820056 TTGCGGCTGTGACGGAAAA 60.820 52.632 0.00 0.00 42.21 2.29
393 394 1.781025 TTGCGGCTGTGACGGAAAAG 61.781 55.000 0.00 0.00 42.21 2.27
394 395 2.251642 GCGGCTGTGACGGAAAAGT 61.252 57.895 0.00 0.00 32.98 2.66
395 396 1.782028 GCGGCTGTGACGGAAAAGTT 61.782 55.000 0.00 0.00 32.98 2.66
396 397 1.504359 CGGCTGTGACGGAAAAGTTA 58.496 50.000 0.00 0.00 0.00 2.24
397 398 2.073816 CGGCTGTGACGGAAAAGTTAT 58.926 47.619 0.00 0.00 0.00 1.89
398 399 2.159707 CGGCTGTGACGGAAAAGTTATG 60.160 50.000 0.00 0.00 0.00 1.90
399 400 3.071479 GGCTGTGACGGAAAAGTTATGA 58.929 45.455 0.00 0.00 0.00 2.15
400 401 3.120304 GGCTGTGACGGAAAAGTTATGAC 60.120 47.826 0.00 0.00 0.00 3.06
401 402 3.120304 GCTGTGACGGAAAAGTTATGACC 60.120 47.826 0.00 0.00 0.00 4.02
402 403 4.062293 CTGTGACGGAAAAGTTATGACCA 58.938 43.478 0.00 0.00 0.00 4.02
403 404 4.062293 TGTGACGGAAAAGTTATGACCAG 58.938 43.478 0.00 0.00 0.00 4.00
404 405 3.435671 GTGACGGAAAAGTTATGACCAGG 59.564 47.826 0.00 0.00 0.00 4.45
405 406 3.325425 TGACGGAAAAGTTATGACCAGGA 59.675 43.478 0.00 0.00 0.00 3.86
406 407 3.933332 GACGGAAAAGTTATGACCAGGAG 59.067 47.826 0.00 0.00 0.00 3.69
407 408 3.270877 CGGAAAAGTTATGACCAGGAGG 58.729 50.000 0.00 0.00 42.21 4.30
408 409 3.621558 GGAAAAGTTATGACCAGGAGGG 58.378 50.000 0.00 0.00 44.81 4.30
435 436 2.887568 GAGCATCGAGGCCACACG 60.888 66.667 19.85 8.20 0.00 4.49
436 437 4.457496 AGCATCGAGGCCACACGG 62.457 66.667 19.85 0.00 0.00 4.94
463 464 2.509336 CACCCGGTGCTTCTAGCG 60.509 66.667 4.16 0.00 46.26 4.26
467 468 2.509336 CGGTGCTTCTAGCGGGTG 60.509 66.667 0.00 0.00 46.26 4.61
468 469 2.125106 GGTGCTTCTAGCGGGTGG 60.125 66.667 0.00 0.00 46.26 4.61
469 470 2.125106 GTGCTTCTAGCGGGTGGG 60.125 66.667 0.00 0.00 46.26 4.61
470 471 3.399181 TGCTTCTAGCGGGTGGGG 61.399 66.667 0.00 0.00 46.26 4.96
471 472 4.858680 GCTTCTAGCGGGTGGGGC 62.859 72.222 0.00 0.00 0.00 5.80
472 473 4.530857 CTTCTAGCGGGTGGGGCG 62.531 72.222 0.00 0.00 35.00 6.13
533 534 3.813596 CGCAAGGGAAGGAATCGG 58.186 61.111 0.00 0.00 0.00 4.18
534 535 1.819632 CGCAAGGGAAGGAATCGGG 60.820 63.158 0.00 0.00 0.00 5.14
535 536 1.453928 GCAAGGGAAGGAATCGGGG 60.454 63.158 0.00 0.00 0.00 5.73
536 537 1.921869 GCAAGGGAAGGAATCGGGGA 61.922 60.000 0.00 0.00 0.00 4.81
537 538 0.623723 CAAGGGAAGGAATCGGGGAA 59.376 55.000 0.00 0.00 0.00 3.97
538 539 1.005450 CAAGGGAAGGAATCGGGGAAA 59.995 52.381 0.00 0.00 0.00 3.13
539 540 1.608425 AGGGAAGGAATCGGGGAAAT 58.392 50.000 0.00 0.00 0.00 2.17
540 541 1.215423 AGGGAAGGAATCGGGGAAATG 59.785 52.381 0.00 0.00 0.00 2.32
541 542 1.692411 GGAAGGAATCGGGGAAATGG 58.308 55.000 0.00 0.00 0.00 3.16
542 543 1.692411 GAAGGAATCGGGGAAATGGG 58.308 55.000 0.00 0.00 0.00 4.00
543 544 0.261696 AAGGAATCGGGGAAATGGGG 59.738 55.000 0.00 0.00 0.00 4.96
544 545 0.626277 AGGAATCGGGGAAATGGGGA 60.626 55.000 0.00 0.00 0.00 4.81
545 546 0.482887 GGAATCGGGGAAATGGGGAT 59.517 55.000 0.00 0.00 0.00 3.85
546 547 1.547901 GGAATCGGGGAAATGGGGATC 60.548 57.143 0.00 0.00 0.00 3.36
547 548 1.144913 GAATCGGGGAAATGGGGATCA 59.855 52.381 0.00 0.00 0.00 2.92
548 549 0.478507 ATCGGGGAAATGGGGATCAC 59.521 55.000 0.00 0.00 0.00 3.06
549 550 1.152756 CGGGGAAATGGGGATCACC 60.153 63.158 7.20 7.20 39.11 4.02
550 551 1.932156 CGGGGAAATGGGGATCACCA 61.932 60.000 21.60 21.60 46.24 4.17
551 552 0.397114 GGGGAAATGGGGATCACCAC 60.397 60.000 21.81 6.70 44.72 4.16
552 553 0.751643 GGGAAATGGGGATCACCACG 60.752 60.000 21.81 0.00 44.72 4.94
553 554 0.034477 GGAAATGGGGATCACCACGT 60.034 55.000 21.81 10.34 44.72 4.49
554 555 1.094785 GAAATGGGGATCACCACGTG 58.905 55.000 21.81 9.08 44.72 4.49
555 556 0.323360 AAATGGGGATCACCACGTGG 60.323 55.000 32.83 32.83 44.72 4.94
556 557 1.204786 AATGGGGATCACCACGTGGA 61.205 55.000 40.21 20.46 44.72 4.02
557 558 1.626356 ATGGGGATCACCACGTGGAG 61.626 60.000 40.21 32.10 44.72 3.86
558 559 2.584608 GGGATCACCACGTGGAGG 59.415 66.667 40.21 29.00 39.85 4.30
559 560 1.987855 GGGATCACCACGTGGAGGA 60.988 63.158 40.21 32.67 39.85 3.71
560 561 1.338136 GGGATCACCACGTGGAGGAT 61.338 60.000 40.21 35.25 39.85 3.24
561 562 0.541863 GGATCACCACGTGGAGGATT 59.458 55.000 40.21 22.84 38.94 3.01
562 563 1.760613 GGATCACCACGTGGAGGATTA 59.239 52.381 40.21 17.23 38.94 1.75
563 564 2.224066 GGATCACCACGTGGAGGATTAG 60.224 54.545 40.21 18.84 38.94 1.73
564 565 2.225382 TCACCACGTGGAGGATTAGA 57.775 50.000 40.21 20.60 38.94 2.10
565 566 1.822990 TCACCACGTGGAGGATTAGAC 59.177 52.381 40.21 0.00 38.94 2.59
566 567 0.815734 ACCACGTGGAGGATTAGACG 59.184 55.000 40.21 10.03 38.94 4.18
567 568 1.100510 CCACGTGGAGGATTAGACGA 58.899 55.000 31.31 0.00 37.39 4.20
568 569 1.681793 CCACGTGGAGGATTAGACGAT 59.318 52.381 31.31 0.00 37.39 3.73
569 570 2.100916 CCACGTGGAGGATTAGACGATT 59.899 50.000 31.31 0.00 37.39 3.34
570 571 3.116300 CACGTGGAGGATTAGACGATTG 58.884 50.000 7.95 0.00 35.77 2.67
571 572 2.100916 ACGTGGAGGATTAGACGATTGG 59.899 50.000 0.00 0.00 35.77 3.16
572 573 2.545952 CGTGGAGGATTAGACGATTGGG 60.546 54.545 0.00 0.00 33.64 4.12
573 574 2.047061 TGGAGGATTAGACGATTGGGG 58.953 52.381 0.00 0.00 0.00 4.96
574 575 2.326428 GGAGGATTAGACGATTGGGGA 58.674 52.381 0.00 0.00 0.00 4.81
575 576 2.300437 GGAGGATTAGACGATTGGGGAG 59.700 54.545 0.00 0.00 0.00 4.30
576 577 2.300437 GAGGATTAGACGATTGGGGAGG 59.700 54.545 0.00 0.00 0.00 4.30
635 641 7.470563 GCCTAGCACTTAATTAATTCCTGCAAT 60.471 37.037 19.21 8.43 0.00 3.56
657 663 5.106631 TCCTCCTATTCAACCCCATCTAT 57.893 43.478 0.00 0.00 0.00 1.98
668 674 3.736094 ACCCCATCTATTCAGTTCCTCA 58.264 45.455 0.00 0.00 0.00 3.86
740 746 9.321562 GAATATTTAGAGTATTCCGTTTGGTCA 57.678 33.333 0.00 0.00 34.15 4.02
741 747 8.888579 ATATTTAGAGTATTCCGTTTGGTCAG 57.111 34.615 0.00 0.00 36.30 3.51
768 774 8.303876 TCTTCCAAAGCCTTGATAATTAACAAC 58.696 33.333 4.20 0.00 34.14 3.32
769 775 7.531857 TCCAAAGCCTTGATAATTAACAACA 57.468 32.000 4.20 0.00 34.14 3.33
770 776 7.957002 TCCAAAGCCTTGATAATTAACAACAA 58.043 30.769 4.20 2.06 34.14 2.83
880 887 3.638484 CCGGTTCTGAACATTTCCAAAC 58.362 45.455 21.01 0.92 0.00 2.93
904 911 4.686554 CAGCAAGTACCAACTGAACTCTAC 59.313 45.833 1.39 0.00 35.62 2.59
905 912 4.589374 AGCAAGTACCAACTGAACTCTACT 59.411 41.667 0.00 0.00 35.62 2.57
906 913 4.924462 GCAAGTACCAACTGAACTCTACTC 59.076 45.833 0.00 0.00 35.62 2.59
949 956 4.788679 TCGTAGAGAGAGAGAGAGAGAGA 58.211 47.826 0.00 0.00 0.00 3.10
950 957 4.822350 TCGTAGAGAGAGAGAGAGAGAGAG 59.178 50.000 0.00 0.00 0.00 3.20
951 958 4.822350 CGTAGAGAGAGAGAGAGAGAGAGA 59.178 50.000 0.00 0.00 0.00 3.10
952 959 5.049060 CGTAGAGAGAGAGAGAGAGAGAGAG 60.049 52.000 0.00 0.00 0.00 3.20
953 960 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
954 961 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
955 962 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
956 963 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
957 964 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
958 965 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
959 966 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
960 967 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
961 968 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
962 969 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
963 970 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
964 971 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
965 972 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
966 973 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
967 974 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
968 975 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
969 976 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
970 977 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
971 978 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
972 979 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
973 980 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
974 981 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1431 1441 2.131709 CGCCAATCTCCTCCGGGTA 61.132 63.158 0.00 0.00 0.00 3.69
1647 1675 1.202769 GGGGGTGCAAGTACCTGGTA 61.203 60.000 1.49 1.49 40.66 3.25
1856 1884 4.335647 CGGCAGGTTGCTGGGACT 62.336 66.667 1.94 0.00 45.66 3.85
1857 1885 2.674380 GGCAGGTTGCTGGGACTG 60.674 66.667 0.67 0.00 44.28 3.51
1859 1887 2.034687 CAGGTTGCTGGGACTGGG 59.965 66.667 0.00 0.00 0.00 4.45
1861 1889 2.227036 AGGTTGCTGGGACTGGGAG 61.227 63.158 0.00 0.00 0.00 4.30
1862 1890 2.360475 GTTGCTGGGACTGGGAGC 60.360 66.667 0.00 0.00 0.00 4.70
2034 2062 3.303135 AACGACTGCGAGAGGGCA 61.303 61.111 0.00 0.00 41.45 5.36
2223 2251 1.690219 GGATGGATCCAGCAGACCGT 61.690 60.000 30.03 6.10 46.38 4.83
2646 2680 5.993106 AAAAGAAGAAGTTGGAGAACTCG 57.007 39.130 0.00 0.00 41.87 4.18
3004 3065 1.024046 CATTGTCGCCGGAATGGTCA 61.024 55.000 5.05 0.00 41.21 4.02
3100 4411 2.603560 GACGTGTACAAGAGCCTTATGC 59.396 50.000 16.00 0.00 41.71 3.14
3298 4621 2.172930 AGAGAGGTGTATAGAGGCGACA 59.827 50.000 0.00 0.00 0.00 4.35
3541 4865 8.819974 CAGTACAAAATGCATGAAAAGTTCTTT 58.180 29.630 0.00 0.00 0.00 2.52
3626 4954 8.774890 TTGGTATTTGTTCGTACTGCTATTTA 57.225 30.769 0.00 0.00 0.00 1.40
3877 5207 6.677913 TGCAGCCTTTTATTTTTAGTGTCTC 58.322 36.000 0.00 0.00 0.00 3.36
4063 5393 2.514824 GGAAGGAGATGTGGCCGC 60.515 66.667 10.11 10.11 0.00 6.53
4170 5500 3.282021 TGCAAAGATAGAGATGGTTGCC 58.718 45.455 3.95 0.00 40.42 4.52
4288 5619 8.780249 ACCCTCATTCGGTTATTTTAATTATCG 58.220 33.333 0.00 0.00 0.00 2.92
4290 5621 8.286800 CCTCATTCGGTTATTTTAATTATCGCA 58.713 33.333 0.00 0.00 0.00 5.10
4421 5752 9.090692 ACATTTTGATGTCTTTCTCAGTTTTTG 57.909 29.630 0.00 0.00 0.00 2.44
4455 5803 9.578576 TTCAGTTTTACCTTAGTCTACTCAGTA 57.421 33.333 0.00 0.00 0.00 2.74
4481 5829 8.716646 ATCATGTTGTTTCTATGTCGTAATCA 57.283 30.769 0.00 0.00 0.00 2.57
4525 5873 6.713731 TTCCTTCAGTTTAGGGACCTTAAT 57.286 37.500 0.00 0.00 33.41 1.40
4526 5874 6.713731 TCCTTCAGTTTAGGGACCTTAATT 57.286 37.500 0.00 0.00 33.41 1.40
4528 5876 6.273730 TCCTTCAGTTTAGGGACCTTAATTCA 59.726 38.462 0.00 0.00 33.41 2.57
4530 5878 5.812286 TCAGTTTAGGGACCTTAATTCACC 58.188 41.667 0.00 0.00 0.00 4.02
4531 5879 4.948004 CAGTTTAGGGACCTTAATTCACCC 59.052 45.833 0.00 0.00 40.71 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.496470 CCCTTATATAGACGGTGGAGGC 59.504 54.545 0.00 0.00 0.00 4.70
1 2 3.097614 CCCCTTATATAGACGGTGGAGG 58.902 54.545 0.00 0.00 0.00 4.30
2 3 4.017808 CTCCCCTTATATAGACGGTGGAG 58.982 52.174 10.79 10.79 31.96 3.86
3 4 3.245514 CCTCCCCTTATATAGACGGTGGA 60.246 52.174 0.00 1.86 32.60 4.02
4 5 3.097614 CCTCCCCTTATATAGACGGTGG 58.902 54.545 0.00 0.00 0.00 4.61
5 6 2.496470 GCCTCCCCTTATATAGACGGTG 59.504 54.545 0.00 0.00 0.00 4.94
6 7 2.559252 GGCCTCCCCTTATATAGACGGT 60.559 54.545 0.00 0.00 0.00 4.83
7 8 2.108970 GGCCTCCCCTTATATAGACGG 58.891 57.143 0.00 0.00 0.00 4.79
8 9 2.761208 CTGGCCTCCCCTTATATAGACG 59.239 54.545 3.32 0.00 0.00 4.18
9 10 3.108376 CCTGGCCTCCCCTTATATAGAC 58.892 54.545 3.32 0.00 0.00 2.59
10 11 3.008398 TCCTGGCCTCCCCTTATATAGA 58.992 50.000 3.32 0.00 0.00 1.98
11 12 3.012959 TCTCCTGGCCTCCCCTTATATAG 59.987 52.174 3.32 0.00 0.00 1.31
12 13 3.008398 TCTCCTGGCCTCCCCTTATATA 58.992 50.000 3.32 0.00 0.00 0.86
13 14 1.802117 TCTCCTGGCCTCCCCTTATAT 59.198 52.381 3.32 0.00 0.00 0.86
14 15 1.132817 GTCTCCTGGCCTCCCCTTATA 60.133 57.143 3.32 0.00 0.00 0.98
15 16 0.400670 GTCTCCTGGCCTCCCCTTAT 60.401 60.000 3.32 0.00 0.00 1.73
16 17 1.003051 GTCTCCTGGCCTCCCCTTA 59.997 63.158 3.32 0.00 0.00 2.69
17 18 2.285743 GTCTCCTGGCCTCCCCTT 60.286 66.667 3.32 0.00 0.00 3.95
18 19 4.423209 GGTCTCCTGGCCTCCCCT 62.423 72.222 3.32 0.00 0.00 4.79
19 20 3.952799 AAGGTCTCCTGGCCTCCCC 62.953 68.421 3.32 0.00 32.13 4.81
20 21 2.285743 AAGGTCTCCTGGCCTCCC 60.286 66.667 3.32 0.00 32.13 4.30
21 22 1.613630 TGAAGGTCTCCTGGCCTCC 60.614 63.158 3.32 0.00 32.13 4.30
22 23 1.599576 GTGAAGGTCTCCTGGCCTC 59.400 63.158 3.32 0.00 32.13 4.70
23 24 2.286523 CGTGAAGGTCTCCTGGCCT 61.287 63.158 3.32 0.00 32.13 5.19
24 25 1.617947 ATCGTGAAGGTCTCCTGGCC 61.618 60.000 0.00 0.00 32.13 5.36
25 26 0.179097 GATCGTGAAGGTCTCCTGGC 60.179 60.000 0.00 0.00 32.13 4.85
26 27 1.186200 TGATCGTGAAGGTCTCCTGG 58.814 55.000 0.00 0.00 32.13 4.45
27 28 2.692557 AGATGATCGTGAAGGTCTCCTG 59.307 50.000 0.00 0.00 32.13 3.86
28 29 3.025322 AGATGATCGTGAAGGTCTCCT 57.975 47.619 0.00 0.00 33.87 3.69
29 30 5.242838 AGAATAGATGATCGTGAAGGTCTCC 59.757 44.000 0.00 0.00 0.00 3.71
30 31 6.325919 AGAATAGATGATCGTGAAGGTCTC 57.674 41.667 0.00 0.00 0.00 3.36
31 32 6.723298 AAGAATAGATGATCGTGAAGGTCT 57.277 37.500 0.00 0.00 0.00 3.85
32 33 7.877003 TCTAAGAATAGATGATCGTGAAGGTC 58.123 38.462 0.00 0.00 33.17 3.85
33 34 7.825331 TCTAAGAATAGATGATCGTGAAGGT 57.175 36.000 0.00 0.00 33.17 3.50
50 51 9.121658 TGCTATCGAGAGTTTTCTATCTAAGAA 57.878 33.333 9.12 0.00 42.62 2.52
51 52 8.678593 TGCTATCGAGAGTTTTCTATCTAAGA 57.321 34.615 9.12 0.00 36.16 2.10
52 53 9.906660 ATTGCTATCGAGAGTTTTCTATCTAAG 57.093 33.333 9.12 0.00 36.16 2.18
53 54 9.900710 GATTGCTATCGAGAGTTTTCTATCTAA 57.099 33.333 9.12 0.00 36.16 2.10
54 55 9.290988 AGATTGCTATCGAGAGTTTTCTATCTA 57.709 33.333 9.12 0.00 36.16 1.98
55 56 8.177119 AGATTGCTATCGAGAGTTTTCTATCT 57.823 34.615 9.12 6.29 36.16 1.98
56 57 8.810652 AAGATTGCTATCGAGAGTTTTCTATC 57.189 34.615 9.12 4.21 35.85 2.08
59 60 9.685828 GTATAAGATTGCTATCGAGAGTTTTCT 57.314 33.333 9.12 5.57 35.85 2.52
60 61 9.464714 TGTATAAGATTGCTATCGAGAGTTTTC 57.535 33.333 9.12 3.38 35.85 2.29
61 62 9.250624 GTGTATAAGATTGCTATCGAGAGTTTT 57.749 33.333 9.12 0.00 35.85 2.43
62 63 7.868415 GGTGTATAAGATTGCTATCGAGAGTTT 59.132 37.037 9.12 0.00 35.85 2.66
63 64 7.014326 TGGTGTATAAGATTGCTATCGAGAGTT 59.986 37.037 9.12 0.00 35.85 3.01
64 65 6.490381 TGGTGTATAAGATTGCTATCGAGAGT 59.510 38.462 9.12 0.00 35.85 3.24
65 66 6.914259 TGGTGTATAAGATTGCTATCGAGAG 58.086 40.000 1.78 1.78 35.85 3.20
66 67 6.894339 TGGTGTATAAGATTGCTATCGAGA 57.106 37.500 2.42 0.00 35.85 4.04
67 68 7.600375 ACAATGGTGTATAAGATTGCTATCGAG 59.400 37.037 2.42 0.00 35.72 4.04
68 69 7.441836 ACAATGGTGTATAAGATTGCTATCGA 58.558 34.615 2.42 0.00 35.72 3.59
69 70 7.658179 ACAATGGTGTATAAGATTGCTATCG 57.342 36.000 2.42 0.00 35.72 2.92
70 71 8.660373 GCTACAATGGTGTATAAGATTGCTATC 58.340 37.037 0.00 0.00 39.51 2.08
71 72 7.607991 GGCTACAATGGTGTATAAGATTGCTAT 59.392 37.037 0.00 0.00 39.51 2.97
72 73 6.934645 GGCTACAATGGTGTATAAGATTGCTA 59.065 38.462 0.00 0.00 39.51 3.49
73 74 5.765182 GGCTACAATGGTGTATAAGATTGCT 59.235 40.000 0.00 0.00 39.51 3.91
74 75 5.765182 AGGCTACAATGGTGTATAAGATTGC 59.235 40.000 0.00 0.00 39.51 3.56
75 76 7.041098 GGAAGGCTACAATGGTGTATAAGATTG 60.041 40.741 0.00 0.00 39.51 2.67
76 77 6.998673 GGAAGGCTACAATGGTGTATAAGATT 59.001 38.462 0.00 0.00 39.51 2.40
77 78 6.465894 GGGAAGGCTACAATGGTGTATAAGAT 60.466 42.308 0.00 0.00 39.51 2.40
78 79 5.163237 GGGAAGGCTACAATGGTGTATAAGA 60.163 44.000 0.00 0.00 39.51 2.10
79 80 5.063880 GGGAAGGCTACAATGGTGTATAAG 58.936 45.833 0.00 0.00 39.51 1.73
80 81 4.475381 TGGGAAGGCTACAATGGTGTATAA 59.525 41.667 0.00 0.00 39.51 0.98
81 82 4.041464 TGGGAAGGCTACAATGGTGTATA 58.959 43.478 0.00 0.00 39.51 1.47
82 83 2.849943 TGGGAAGGCTACAATGGTGTAT 59.150 45.455 0.00 0.00 39.51 2.29
83 84 2.026636 GTGGGAAGGCTACAATGGTGTA 60.027 50.000 0.00 0.00 39.30 2.90
84 85 1.072266 TGGGAAGGCTACAATGGTGT 58.928 50.000 0.00 0.00 42.09 4.16
85 86 1.463674 GTGGGAAGGCTACAATGGTG 58.536 55.000 0.00 0.00 0.00 4.17
86 87 0.035439 CGTGGGAAGGCTACAATGGT 60.035 55.000 0.00 0.00 0.00 3.55
87 88 0.251916 TCGTGGGAAGGCTACAATGG 59.748 55.000 0.00 0.00 0.00 3.16
88 89 1.656652 CTCGTGGGAAGGCTACAATG 58.343 55.000 0.00 0.00 0.00 2.82
89 90 0.541863 CCTCGTGGGAAGGCTACAAT 59.458 55.000 0.00 0.00 37.23 2.71
90 91 0.834687 ACCTCGTGGGAAGGCTACAA 60.835 55.000 8.63 0.00 38.76 2.41
91 92 0.040058 TACCTCGTGGGAAGGCTACA 59.960 55.000 8.63 0.00 38.76 2.74
92 93 1.411041 ATACCTCGTGGGAAGGCTAC 58.589 55.000 8.63 0.00 38.76 3.58
93 94 2.037144 GAATACCTCGTGGGAAGGCTA 58.963 52.381 8.63 0.00 38.76 3.93
94 95 0.831307 GAATACCTCGTGGGAAGGCT 59.169 55.000 8.63 0.00 38.76 4.58
95 96 0.179054 GGAATACCTCGTGGGAAGGC 60.179 60.000 8.63 0.00 38.76 4.35
96 97 1.497161 AGGAATACCTCGTGGGAAGG 58.503 55.000 8.63 0.00 44.13 3.46
107 108 4.762251 GCTTATTCATGGTGGAGGAATACC 59.238 45.833 0.00 0.00 37.12 2.73
108 109 5.376625 TGCTTATTCATGGTGGAGGAATAC 58.623 41.667 0.00 0.00 37.12 1.89
109 110 5.645056 TGCTTATTCATGGTGGAGGAATA 57.355 39.130 0.00 0.00 36.49 1.75
110 111 4.524802 TGCTTATTCATGGTGGAGGAAT 57.475 40.909 0.00 0.00 38.59 3.01
111 112 4.314522 TTGCTTATTCATGGTGGAGGAA 57.685 40.909 0.00 0.00 0.00 3.36
112 113 4.524802 ATTGCTTATTCATGGTGGAGGA 57.475 40.909 0.00 0.00 0.00 3.71
113 114 5.132502 TGTATTGCTTATTCATGGTGGAGG 58.867 41.667 0.00 0.00 0.00 4.30
114 115 6.319658 ACTTGTATTGCTTATTCATGGTGGAG 59.680 38.462 0.00 0.00 0.00 3.86
115 116 6.186957 ACTTGTATTGCTTATTCATGGTGGA 58.813 36.000 0.00 0.00 0.00 4.02
116 117 6.455360 ACTTGTATTGCTTATTCATGGTGG 57.545 37.500 0.00 0.00 0.00 4.61
117 118 7.498900 TCCTACTTGTATTGCTTATTCATGGTG 59.501 37.037 0.00 0.00 0.00 4.17
118 119 7.573710 TCCTACTTGTATTGCTTATTCATGGT 58.426 34.615 0.00 0.00 0.00 3.55
119 120 8.509690 CATCCTACTTGTATTGCTTATTCATGG 58.490 37.037 0.00 0.00 0.00 3.66
120 121 9.060347 ACATCCTACTTGTATTGCTTATTCATG 57.940 33.333 0.00 0.00 0.00 3.07
122 123 9.764363 CTACATCCTACTTGTATTGCTTATTCA 57.236 33.333 0.00 0.00 0.00 2.57
123 124 9.209175 CCTACATCCTACTTGTATTGCTTATTC 57.791 37.037 0.00 0.00 0.00 1.75
124 125 8.157476 CCCTACATCCTACTTGTATTGCTTATT 58.843 37.037 0.00 0.00 0.00 1.40
125 126 7.292591 ACCCTACATCCTACTTGTATTGCTTAT 59.707 37.037 0.00 0.00 0.00 1.73
126 127 6.614087 ACCCTACATCCTACTTGTATTGCTTA 59.386 38.462 0.00 0.00 0.00 3.09
127 128 5.428783 ACCCTACATCCTACTTGTATTGCTT 59.571 40.000 0.00 0.00 0.00 3.91
128 129 4.969359 ACCCTACATCCTACTTGTATTGCT 59.031 41.667 0.00 0.00 0.00 3.91
129 130 5.291905 ACCCTACATCCTACTTGTATTGC 57.708 43.478 0.00 0.00 0.00 3.56
130 131 9.924650 GTAATACCCTACATCCTACTTGTATTG 57.075 37.037 0.00 0.00 31.98 1.90
131 132 9.893975 AGTAATACCCTACATCCTACTTGTATT 57.106 33.333 0.00 0.00 33.60 1.89
132 133 9.531158 GAGTAATACCCTACATCCTACTTGTAT 57.469 37.037 0.00 0.00 0.00 2.29
133 134 8.730948 AGAGTAATACCCTACATCCTACTTGTA 58.269 37.037 0.00 0.00 0.00 2.41
134 135 7.593653 AGAGTAATACCCTACATCCTACTTGT 58.406 38.462 0.00 0.00 0.00 3.16
135 136 8.480133 AAGAGTAATACCCTACATCCTACTTG 57.520 38.462 0.00 0.00 0.00 3.16
136 137 7.447853 CGAAGAGTAATACCCTACATCCTACTT 59.552 40.741 0.00 0.00 0.00 2.24
137 138 6.941436 CGAAGAGTAATACCCTACATCCTACT 59.059 42.308 0.00 0.00 0.00 2.57
138 139 6.150809 CCGAAGAGTAATACCCTACATCCTAC 59.849 46.154 0.00 0.00 0.00 3.18
139 140 6.243900 CCGAAGAGTAATACCCTACATCCTA 58.756 44.000 0.00 0.00 0.00 2.94
140 141 5.078256 CCGAAGAGTAATACCCTACATCCT 58.922 45.833 0.00 0.00 0.00 3.24
141 142 4.321824 GCCGAAGAGTAATACCCTACATCC 60.322 50.000 0.00 0.00 0.00 3.51
142 143 4.523558 AGCCGAAGAGTAATACCCTACATC 59.476 45.833 0.00 0.00 0.00 3.06
143 144 4.281182 CAGCCGAAGAGTAATACCCTACAT 59.719 45.833 0.00 0.00 0.00 2.29
144 145 3.635373 CAGCCGAAGAGTAATACCCTACA 59.365 47.826 0.00 0.00 0.00 2.74
145 146 3.635836 ACAGCCGAAGAGTAATACCCTAC 59.364 47.826 0.00 0.00 0.00 3.18
146 147 3.887716 GACAGCCGAAGAGTAATACCCTA 59.112 47.826 0.00 0.00 0.00 3.53
147 148 2.694109 GACAGCCGAAGAGTAATACCCT 59.306 50.000 0.00 0.00 0.00 4.34
148 149 2.223994 GGACAGCCGAAGAGTAATACCC 60.224 54.545 0.00 0.00 0.00 3.69
149 150 3.095102 GGACAGCCGAAGAGTAATACC 57.905 52.381 0.00 0.00 0.00 2.73
162 163 1.833787 TTACCCAGGTTCGGACAGCC 61.834 60.000 0.00 0.00 0.00 4.85
163 164 0.035739 TTTACCCAGGTTCGGACAGC 59.964 55.000 0.00 0.00 0.00 4.40
164 165 2.148768 GTTTTACCCAGGTTCGGACAG 58.851 52.381 0.00 0.00 0.00 3.51
165 166 1.202794 GGTTTTACCCAGGTTCGGACA 60.203 52.381 0.00 0.00 30.04 4.02
166 167 1.527034 GGTTTTACCCAGGTTCGGAC 58.473 55.000 0.00 0.00 30.04 4.79
185 186 1.418334 AGATCGGAGATCCCACAAGG 58.582 55.000 6.43 0.00 45.12 3.61
186 187 3.891977 TCTTAGATCGGAGATCCCACAAG 59.108 47.826 6.43 5.93 45.12 3.16
187 188 3.637229 GTCTTAGATCGGAGATCCCACAA 59.363 47.826 6.43 0.00 45.12 3.33
188 189 3.117474 AGTCTTAGATCGGAGATCCCACA 60.117 47.826 6.43 0.00 45.12 4.17
189 190 3.492337 AGTCTTAGATCGGAGATCCCAC 58.508 50.000 6.43 0.00 45.12 4.61
190 191 3.885976 AGTCTTAGATCGGAGATCCCA 57.114 47.619 6.43 0.00 45.12 4.37
191 192 3.508402 GGAAGTCTTAGATCGGAGATCCC 59.492 52.174 6.43 3.79 45.12 3.85
192 193 4.145807 TGGAAGTCTTAGATCGGAGATCC 58.854 47.826 6.43 11.25 45.12 3.36
193 194 4.320935 GCTGGAAGTCTTAGATCGGAGATC 60.321 50.000 2.02 2.02 37.64 2.75
194 195 3.572255 GCTGGAAGTCTTAGATCGGAGAT 59.428 47.826 4.69 0.00 37.64 2.75
195 196 2.952978 GCTGGAAGTCTTAGATCGGAGA 59.047 50.000 0.00 0.00 37.27 3.71
196 197 2.955660 AGCTGGAAGTCTTAGATCGGAG 59.044 50.000 0.00 0.00 35.30 4.63
197 198 2.690497 CAGCTGGAAGTCTTAGATCGGA 59.310 50.000 5.57 0.00 35.30 4.55
198 199 2.801342 GCAGCTGGAAGTCTTAGATCGG 60.801 54.545 17.12 0.00 35.30 4.18
199 200 2.468831 GCAGCTGGAAGTCTTAGATCG 58.531 52.381 17.12 0.00 35.30 3.69
200 201 2.468831 CGCAGCTGGAAGTCTTAGATC 58.531 52.381 17.12 0.00 35.30 2.75
201 202 2.593346 CGCAGCTGGAAGTCTTAGAT 57.407 50.000 17.12 0.00 35.30 1.98
216 217 1.741770 GGTACAGGTCCAAGCGCAG 60.742 63.158 11.47 0.38 0.00 5.18
217 218 2.345991 GGTACAGGTCCAAGCGCA 59.654 61.111 11.47 0.00 0.00 6.09
218 219 2.813908 CGGTACAGGTCCAAGCGC 60.814 66.667 0.00 0.00 0.00 5.92
219 220 1.153823 CTCGGTACAGGTCCAAGCG 60.154 63.158 0.00 0.00 35.57 4.68
220 221 1.218316 CCTCGGTACAGGTCCAAGC 59.782 63.158 0.00 0.00 0.00 4.01
221 222 0.613853 TCCCTCGGTACAGGTCCAAG 60.614 60.000 0.00 0.00 0.00 3.61
222 223 0.042131 ATCCCTCGGTACAGGTCCAA 59.958 55.000 0.00 0.00 0.00 3.53
223 224 0.396695 GATCCCTCGGTACAGGTCCA 60.397 60.000 0.00 0.00 0.00 4.02
224 225 0.106116 AGATCCCTCGGTACAGGTCC 60.106 60.000 0.00 0.00 0.00 4.46
225 226 1.033574 CAGATCCCTCGGTACAGGTC 58.966 60.000 0.00 0.00 0.00 3.85
226 227 0.629596 TCAGATCCCTCGGTACAGGT 59.370 55.000 0.00 0.00 0.00 4.00
227 228 1.033574 GTCAGATCCCTCGGTACAGG 58.966 60.000 0.00 0.00 0.00 4.00
228 229 0.663688 CGTCAGATCCCTCGGTACAG 59.336 60.000 0.00 0.00 0.00 2.74
229 230 0.750546 CCGTCAGATCCCTCGGTACA 60.751 60.000 10.56 0.00 38.45 2.90
230 231 2.031360 CCGTCAGATCCCTCGGTAC 58.969 63.158 10.56 0.00 38.45 3.34
231 232 4.573210 CCGTCAGATCCCTCGGTA 57.427 61.111 10.56 0.00 38.45 4.02
233 234 1.329256 AATACCGTCAGATCCCTCGG 58.671 55.000 15.29 15.29 46.98 4.63
234 235 3.123804 CAAAATACCGTCAGATCCCTCG 58.876 50.000 0.00 0.00 0.00 4.63
235 236 2.872858 GCAAAATACCGTCAGATCCCTC 59.127 50.000 0.00 0.00 0.00 4.30
236 237 2.238646 TGCAAAATACCGTCAGATCCCT 59.761 45.455 0.00 0.00 0.00 4.20
237 238 2.354821 GTGCAAAATACCGTCAGATCCC 59.645 50.000 0.00 0.00 0.00 3.85
238 239 2.354821 GGTGCAAAATACCGTCAGATCC 59.645 50.000 0.00 0.00 0.00 3.36
239 240 3.675467 GGTGCAAAATACCGTCAGATC 57.325 47.619 0.00 0.00 0.00 2.75
247 248 0.869730 ACGTGACGGTGCAAAATACC 59.130 50.000 10.66 0.00 34.81 2.73
248 249 1.399215 CCACGTGACGGTGCAAAATAC 60.399 52.381 19.30 0.00 36.59 1.89
249 250 0.869068 CCACGTGACGGTGCAAAATA 59.131 50.000 19.30 0.00 36.59 1.40
250 251 1.098712 ACCACGTGACGGTGCAAAAT 61.099 50.000 19.30 0.00 36.59 1.82
251 252 0.461516 TACCACGTGACGGTGCAAAA 60.462 50.000 19.30 0.00 37.33 2.44
252 253 1.143401 TACCACGTGACGGTGCAAA 59.857 52.632 19.30 0.00 37.33 3.68
253 254 1.592131 GTACCACGTGACGGTGCAA 60.592 57.895 19.30 0.00 38.83 4.08
254 255 2.027897 GTACCACGTGACGGTGCA 59.972 61.111 19.30 0.00 38.83 4.57
255 256 2.019951 CAGTACCACGTGACGGTGC 61.020 63.158 19.30 10.46 39.24 5.01
256 257 1.372499 CCAGTACCACGTGACGGTG 60.372 63.158 19.30 8.93 37.33 4.94
257 258 1.108727 TTCCAGTACCACGTGACGGT 61.109 55.000 19.30 9.44 40.73 4.83
258 259 0.665369 GTTCCAGTACCACGTGACGG 60.665 60.000 19.30 13.34 0.00 4.79
259 260 0.665369 GGTTCCAGTACCACGTGACG 60.665 60.000 19.30 2.24 38.12 4.35
260 261 0.665369 CGGTTCCAGTACCACGTGAC 60.665 60.000 19.30 8.35 38.12 3.67
261 262 0.822944 TCGGTTCCAGTACCACGTGA 60.823 55.000 19.30 0.00 38.12 4.35
262 263 0.245539 ATCGGTTCCAGTACCACGTG 59.754 55.000 9.08 9.08 38.12 4.49
263 264 0.245539 CATCGGTTCCAGTACCACGT 59.754 55.000 0.00 0.00 38.12 4.49
264 265 0.528924 TCATCGGTTCCAGTACCACG 59.471 55.000 0.00 0.00 38.12 4.94
265 266 1.822990 TCTCATCGGTTCCAGTACCAC 59.177 52.381 0.00 0.00 38.12 4.16
266 267 1.822990 GTCTCATCGGTTCCAGTACCA 59.177 52.381 0.00 0.00 38.12 3.25
267 268 1.822990 TGTCTCATCGGTTCCAGTACC 59.177 52.381 0.00 0.00 34.72 3.34
268 269 3.802948 ATGTCTCATCGGTTCCAGTAC 57.197 47.619 0.00 0.00 0.00 2.73
269 270 4.338400 CACTATGTCTCATCGGTTCCAGTA 59.662 45.833 0.00 0.00 0.00 2.74
270 271 3.131223 CACTATGTCTCATCGGTTCCAGT 59.869 47.826 0.00 0.00 0.00 4.00
271 272 3.711086 CACTATGTCTCATCGGTTCCAG 58.289 50.000 0.00 0.00 0.00 3.86
272 273 2.159099 GCACTATGTCTCATCGGTTCCA 60.159 50.000 0.00 0.00 0.00 3.53
273 274 2.101582 AGCACTATGTCTCATCGGTTCC 59.898 50.000 0.00 0.00 0.00 3.62
274 275 3.119291 CAGCACTATGTCTCATCGGTTC 58.881 50.000 0.00 0.00 0.00 3.62
275 276 2.739932 GCAGCACTATGTCTCATCGGTT 60.740 50.000 0.00 0.00 0.00 4.44
276 277 1.202463 GCAGCACTATGTCTCATCGGT 60.202 52.381 0.00 0.00 0.00 4.69
277 278 1.202452 TGCAGCACTATGTCTCATCGG 60.202 52.381 0.00 0.00 0.00 4.18
278 279 2.214387 TGCAGCACTATGTCTCATCG 57.786 50.000 0.00 0.00 0.00 3.84
279 280 3.309138 CAGTTGCAGCACTATGTCTCATC 59.691 47.826 2.55 0.00 0.00 2.92
280 281 3.268330 CAGTTGCAGCACTATGTCTCAT 58.732 45.455 2.55 0.00 0.00 2.90
281 282 2.613725 CCAGTTGCAGCACTATGTCTCA 60.614 50.000 2.55 0.00 0.00 3.27
282 283 2.005451 CCAGTTGCAGCACTATGTCTC 58.995 52.381 2.55 0.00 0.00 3.36
283 284 1.947678 GCCAGTTGCAGCACTATGTCT 60.948 52.381 2.55 0.00 40.77 3.41
284 285 0.449388 GCCAGTTGCAGCACTATGTC 59.551 55.000 2.55 0.00 40.77 3.06
285 286 0.037303 AGCCAGTTGCAGCACTATGT 59.963 50.000 2.55 0.00 44.83 2.29
286 287 0.450583 CAGCCAGTTGCAGCACTATG 59.549 55.000 2.55 0.00 44.83 2.23
287 288 0.679002 CCAGCCAGTTGCAGCACTAT 60.679 55.000 2.55 0.00 44.83 2.12
288 289 1.302752 CCAGCCAGTTGCAGCACTA 60.303 57.895 2.55 0.00 44.83 2.74
289 290 2.596631 CCAGCCAGTTGCAGCACT 60.597 61.111 2.55 0.00 44.83 4.40
290 291 3.677648 CCCAGCCAGTTGCAGCAC 61.678 66.667 2.55 0.00 44.83 4.40
291 292 3.855503 CTCCCAGCCAGTTGCAGCA 62.856 63.158 2.55 0.00 44.83 4.41
292 293 3.060615 CTCCCAGCCAGTTGCAGC 61.061 66.667 0.00 0.00 44.83 5.25
293 294 1.970114 CACTCCCAGCCAGTTGCAG 60.970 63.158 0.00 0.00 44.83 4.41
294 295 2.113774 CACTCCCAGCCAGTTGCA 59.886 61.111 0.00 0.00 44.83 4.08
295 296 1.968540 GACACTCCCAGCCAGTTGC 60.969 63.158 0.00 0.00 41.71 4.17
296 297 0.179020 TTGACACTCCCAGCCAGTTG 60.179 55.000 0.00 0.00 0.00 3.16
297 298 0.179018 GTTGACACTCCCAGCCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
298 299 1.344953 TGTTGACACTCCCAGCCAGT 61.345 55.000 0.00 0.00 0.00 4.00
299 300 0.179020 TTGTTGACACTCCCAGCCAG 60.179 55.000 0.00 0.00 0.00 4.85
300 301 0.257328 TTTGTTGACACTCCCAGCCA 59.743 50.000 0.00 0.00 0.00 4.75
301 302 1.398692 TTTTGTTGACACTCCCAGCC 58.601 50.000 0.00 0.00 0.00 4.85
302 303 2.794631 CGTTTTTGTTGACACTCCCAGC 60.795 50.000 0.00 0.00 0.00 4.85
303 304 2.422127 ACGTTTTTGTTGACACTCCCAG 59.578 45.455 0.00 0.00 0.00 4.45
304 305 2.438411 ACGTTTTTGTTGACACTCCCA 58.562 42.857 0.00 0.00 0.00 4.37
305 306 3.497297 AACGTTTTTGTTGACACTCCC 57.503 42.857 0.00 0.00 0.00 4.30
314 315 1.733061 GCCGGTCACAACGTTTTTGTT 60.733 47.619 1.90 0.00 0.00 2.83
315 316 0.179158 GCCGGTCACAACGTTTTTGT 60.179 50.000 1.90 0.00 0.00 2.83
316 317 1.197368 CGCCGGTCACAACGTTTTTG 61.197 55.000 1.90 0.00 0.00 2.44
317 318 1.062845 CGCCGGTCACAACGTTTTT 59.937 52.632 1.90 0.00 0.00 1.94
318 319 1.161563 ATCGCCGGTCACAACGTTTT 61.162 50.000 1.90 0.00 0.00 2.43
319 320 1.595929 ATCGCCGGTCACAACGTTT 60.596 52.632 1.90 0.00 0.00 3.60
320 321 2.029964 ATCGCCGGTCACAACGTT 59.970 55.556 1.90 0.00 0.00 3.99
321 322 2.736995 CATCGCCGGTCACAACGT 60.737 61.111 1.90 0.00 0.00 3.99
322 323 1.009903 TAACATCGCCGGTCACAACG 61.010 55.000 1.90 0.00 0.00 4.10
323 324 1.365699 ATAACATCGCCGGTCACAAC 58.634 50.000 1.90 0.00 0.00 3.32
324 325 2.963548 TATAACATCGCCGGTCACAA 57.036 45.000 1.90 0.00 0.00 3.33
325 326 2.816689 CTTATAACATCGCCGGTCACA 58.183 47.619 1.90 0.00 0.00 3.58
326 327 1.525619 GCTTATAACATCGCCGGTCAC 59.474 52.381 1.90 0.00 0.00 3.67
327 328 1.411246 AGCTTATAACATCGCCGGTCA 59.589 47.619 1.90 0.00 0.00 4.02
328 329 1.792949 CAGCTTATAACATCGCCGGTC 59.207 52.381 1.90 0.00 0.00 4.79
329 330 1.865865 CAGCTTATAACATCGCCGGT 58.134 50.000 1.90 0.00 0.00 5.28
330 331 0.512952 GCAGCTTATAACATCGCCGG 59.487 55.000 0.00 0.00 0.00 6.13
331 332 0.161658 CGCAGCTTATAACATCGCCG 59.838 55.000 0.00 0.00 0.00 6.46
332 333 1.497991 TCGCAGCTTATAACATCGCC 58.502 50.000 0.00 0.00 0.00 5.54
333 334 3.585748 TTTCGCAGCTTATAACATCGC 57.414 42.857 0.00 0.00 0.00 4.58
334 335 5.116528 TCGTATTTCGCAGCTTATAACATCG 59.883 40.000 0.00 0.00 39.67 3.84
335 336 6.448053 TCGTATTTCGCAGCTTATAACATC 57.552 37.500 0.00 0.00 39.67 3.06
336 337 6.838198 TTCGTATTTCGCAGCTTATAACAT 57.162 33.333 0.00 0.00 39.67 2.71
337 338 6.237996 CCTTTCGTATTTCGCAGCTTATAACA 60.238 38.462 0.00 0.00 39.67 2.41
338 339 6.127403 CCTTTCGTATTTCGCAGCTTATAAC 58.873 40.000 0.00 0.00 39.67 1.89
339 340 5.813672 ACCTTTCGTATTTCGCAGCTTATAA 59.186 36.000 0.00 0.00 39.67 0.98
340 341 5.353938 ACCTTTCGTATTTCGCAGCTTATA 58.646 37.500 0.00 0.00 39.67 0.98
341 342 4.189231 ACCTTTCGTATTTCGCAGCTTAT 58.811 39.130 0.00 0.00 39.67 1.73
342 343 3.592059 ACCTTTCGTATTTCGCAGCTTA 58.408 40.909 0.00 0.00 39.67 3.09
343 344 2.423577 ACCTTTCGTATTTCGCAGCTT 58.576 42.857 0.00 0.00 39.67 3.74
344 345 2.094762 ACCTTTCGTATTTCGCAGCT 57.905 45.000 0.00 0.00 39.67 4.24
345 346 2.894307 AACCTTTCGTATTTCGCAGC 57.106 45.000 0.00 0.00 39.67 5.25
346 347 4.034048 AGCATAACCTTTCGTATTTCGCAG 59.966 41.667 0.00 0.00 39.67 5.18
347 348 3.936453 AGCATAACCTTTCGTATTTCGCA 59.064 39.130 0.00 0.00 39.67 5.10
348 349 4.271687 CAGCATAACCTTTCGTATTTCGC 58.728 43.478 0.00 0.00 39.67 4.70
349 350 4.201773 TGCAGCATAACCTTTCGTATTTCG 60.202 41.667 0.00 0.00 41.41 3.46
350 351 5.229921 TGCAGCATAACCTTTCGTATTTC 57.770 39.130 0.00 0.00 0.00 2.17
351 352 5.637006 TTGCAGCATAACCTTTCGTATTT 57.363 34.783 0.00 0.00 0.00 1.40
352 353 5.835113 ATTGCAGCATAACCTTTCGTATT 57.165 34.783 0.00 0.00 0.00 1.89
353 354 5.581605 CAATTGCAGCATAACCTTTCGTAT 58.418 37.500 0.00 0.00 0.00 3.06
354 355 4.674101 GCAATTGCAGCATAACCTTTCGTA 60.674 41.667 25.36 0.00 41.59 3.43
355 356 3.836949 CAATTGCAGCATAACCTTTCGT 58.163 40.909 0.00 0.00 0.00 3.85
356 357 2.599973 GCAATTGCAGCATAACCTTTCG 59.400 45.455 25.36 0.00 41.59 3.46
357 358 2.599973 CGCAATTGCAGCATAACCTTTC 59.400 45.455 28.77 0.00 42.21 2.62
358 359 2.609350 CGCAATTGCAGCATAACCTTT 58.391 42.857 28.77 0.00 42.21 3.11
359 360 1.135024 CCGCAATTGCAGCATAACCTT 60.135 47.619 28.77 0.00 42.21 3.50
360 361 0.457035 CCGCAATTGCAGCATAACCT 59.543 50.000 28.77 0.00 42.21 3.50
361 362 1.147557 GCCGCAATTGCAGCATAACC 61.148 55.000 29.19 2.66 43.52 2.85
362 363 0.179129 AGCCGCAATTGCAGCATAAC 60.179 50.000 33.65 13.86 46.28 1.89
363 364 0.179132 CAGCCGCAATTGCAGCATAA 60.179 50.000 33.65 0.00 46.28 1.90
364 365 1.314534 ACAGCCGCAATTGCAGCATA 61.315 50.000 33.65 0.00 46.28 3.14
365 366 2.183300 CAGCCGCAATTGCAGCAT 59.817 55.556 33.65 19.37 46.28 3.79
366 367 3.296836 ACAGCCGCAATTGCAGCA 61.297 55.556 33.65 0.00 46.28 4.41
367 368 2.807895 CACAGCCGCAATTGCAGC 60.808 61.111 27.46 27.46 44.34 5.25
368 369 1.443194 GTCACAGCCGCAATTGCAG 60.443 57.895 28.77 19.74 42.21 4.41
369 370 2.644418 GTCACAGCCGCAATTGCA 59.356 55.556 28.77 5.74 42.21 4.08
370 371 2.502510 CGTCACAGCCGCAATTGC 60.503 61.111 20.76 20.76 37.78 3.56
371 372 1.851021 TTCCGTCACAGCCGCAATTG 61.851 55.000 0.00 0.00 0.00 2.32
372 373 1.169661 TTTCCGTCACAGCCGCAATT 61.170 50.000 0.00 0.00 0.00 2.32
373 374 1.169661 TTTTCCGTCACAGCCGCAAT 61.170 50.000 0.00 0.00 0.00 3.56
374 375 1.781025 CTTTTCCGTCACAGCCGCAA 61.781 55.000 0.00 0.00 0.00 4.85
375 376 2.203084 TTTTCCGTCACAGCCGCA 60.203 55.556 0.00 0.00 0.00 5.69
376 377 1.782028 AACTTTTCCGTCACAGCCGC 61.782 55.000 0.00 0.00 0.00 6.53
377 378 1.504359 TAACTTTTCCGTCACAGCCG 58.496 50.000 0.00 0.00 0.00 5.52
378 379 3.071479 TCATAACTTTTCCGTCACAGCC 58.929 45.455 0.00 0.00 0.00 4.85
379 380 3.120304 GGTCATAACTTTTCCGTCACAGC 60.120 47.826 0.00 0.00 0.00 4.40
380 381 4.062293 TGGTCATAACTTTTCCGTCACAG 58.938 43.478 0.00 0.00 0.00 3.66
381 382 4.062293 CTGGTCATAACTTTTCCGTCACA 58.938 43.478 0.00 0.00 0.00 3.58
382 383 3.435671 CCTGGTCATAACTTTTCCGTCAC 59.564 47.826 0.00 0.00 0.00 3.67
383 384 3.325425 TCCTGGTCATAACTTTTCCGTCA 59.675 43.478 0.00 0.00 0.00 4.35
384 385 3.933332 CTCCTGGTCATAACTTTTCCGTC 59.067 47.826 0.00 0.00 0.00 4.79
385 386 3.307480 CCTCCTGGTCATAACTTTTCCGT 60.307 47.826 0.00 0.00 0.00 4.69
386 387 3.270877 CCTCCTGGTCATAACTTTTCCG 58.729 50.000 0.00 0.00 0.00 4.30
387 388 3.621558 CCCTCCTGGTCATAACTTTTCC 58.378 50.000 0.00 0.00 0.00 3.13
416 417 4.819761 TGTGGCCTCGATGCTCGC 62.820 66.667 12.54 9.58 40.21 5.03
417 418 2.887568 GTGTGGCCTCGATGCTCG 60.888 66.667 12.54 0.00 42.10 5.03
418 419 2.887568 CGTGTGGCCTCGATGCTC 60.888 66.667 12.54 6.99 0.00 4.26
419 420 4.457496 CCGTGTGGCCTCGATGCT 62.457 66.667 12.54 0.00 0.00 3.79
446 447 2.509336 CGCTAGAAGCACCGGGTG 60.509 66.667 22.87 22.87 42.58 4.61
447 448 3.771160 CCGCTAGAAGCACCGGGT 61.771 66.667 6.32 0.00 42.58 5.28
449 450 3.771160 ACCCGCTAGAAGCACCGG 61.771 66.667 0.00 0.00 42.58 5.28
450 451 2.509336 CACCCGCTAGAAGCACCG 60.509 66.667 0.00 0.00 42.58 4.94
451 452 2.125106 CCACCCGCTAGAAGCACC 60.125 66.667 0.00 0.00 42.58 5.01
452 453 2.125106 CCCACCCGCTAGAAGCAC 60.125 66.667 0.00 0.00 42.58 4.40
453 454 3.399181 CCCCACCCGCTAGAAGCA 61.399 66.667 0.00 0.00 42.58 3.91
454 455 4.858680 GCCCCACCCGCTAGAAGC 62.859 72.222 0.00 0.00 38.02 3.86
455 456 4.530857 CGCCCCACCCGCTAGAAG 62.531 72.222 0.00 0.00 0.00 2.85
472 473 3.752339 CAAGCCGGCTTGCCTTCC 61.752 66.667 46.06 9.12 45.38 3.46
486 487 2.040544 CCCCTACAACAGGCGCAAG 61.041 63.158 10.83 2.59 43.98 4.01
487 488 2.033448 CCCCTACAACAGGCGCAA 59.967 61.111 10.83 0.00 43.98 4.85
488 489 4.028490 CCCCCTACAACAGGCGCA 62.028 66.667 10.83 0.00 43.98 6.09
515 516 1.819632 CCGATTCCTTCCCTTGCGG 60.820 63.158 0.00 0.00 0.00 5.69
516 517 1.819632 CCCGATTCCTTCCCTTGCG 60.820 63.158 0.00 0.00 0.00 4.85
517 518 1.453928 CCCCGATTCCTTCCCTTGC 60.454 63.158 0.00 0.00 0.00 4.01
518 519 0.623723 TTCCCCGATTCCTTCCCTTG 59.376 55.000 0.00 0.00 0.00 3.61
519 520 1.378732 TTTCCCCGATTCCTTCCCTT 58.621 50.000 0.00 0.00 0.00 3.95
520 521 1.215423 CATTTCCCCGATTCCTTCCCT 59.785 52.381 0.00 0.00 0.00 4.20
521 522 1.692411 CATTTCCCCGATTCCTTCCC 58.308 55.000 0.00 0.00 0.00 3.97
522 523 1.692411 CCATTTCCCCGATTCCTTCC 58.308 55.000 0.00 0.00 0.00 3.46
523 524 1.692411 CCCATTTCCCCGATTCCTTC 58.308 55.000 0.00 0.00 0.00 3.46
524 525 0.261696 CCCCATTTCCCCGATTCCTT 59.738 55.000 0.00 0.00 0.00 3.36
525 526 0.626277 TCCCCATTTCCCCGATTCCT 60.626 55.000 0.00 0.00 0.00 3.36
526 527 0.482887 ATCCCCATTTCCCCGATTCC 59.517 55.000 0.00 0.00 0.00 3.01
527 528 1.144913 TGATCCCCATTTCCCCGATTC 59.855 52.381 0.00 0.00 0.00 2.52
528 529 1.133482 GTGATCCCCATTTCCCCGATT 60.133 52.381 0.00 0.00 0.00 3.34
529 530 0.478507 GTGATCCCCATTTCCCCGAT 59.521 55.000 0.00 0.00 0.00 4.18
530 531 1.641552 GGTGATCCCCATTTCCCCGA 61.642 60.000 0.00 0.00 0.00 5.14
531 532 1.152756 GGTGATCCCCATTTCCCCG 60.153 63.158 0.00 0.00 0.00 5.73
532 533 0.397114 GTGGTGATCCCCATTTCCCC 60.397 60.000 0.00 0.00 36.74 4.81
533 534 0.751643 CGTGGTGATCCCCATTTCCC 60.752 60.000 0.00 0.00 36.74 3.97
534 535 0.034477 ACGTGGTGATCCCCATTTCC 60.034 55.000 0.00 0.00 36.74 3.13
535 536 1.094785 CACGTGGTGATCCCCATTTC 58.905 55.000 7.95 0.00 36.74 2.17
536 537 0.323360 CCACGTGGTGATCCCCATTT 60.323 55.000 26.95 0.00 36.74 2.32
537 538 1.204786 TCCACGTGGTGATCCCCATT 61.205 55.000 32.74 0.00 36.74 3.16
538 539 1.615124 TCCACGTGGTGATCCCCAT 60.615 57.895 32.74 0.00 36.74 4.00
539 540 2.203862 TCCACGTGGTGATCCCCA 60.204 61.111 32.74 9.47 35.23 4.96
540 541 2.584608 CTCCACGTGGTGATCCCC 59.415 66.667 32.74 0.00 35.23 4.81
541 542 1.338136 ATCCTCCACGTGGTGATCCC 61.338 60.000 32.66 0.00 35.23 3.85
542 543 0.541863 AATCCTCCACGTGGTGATCC 59.458 55.000 32.66 0.00 35.23 3.36
543 544 2.693591 TCTAATCCTCCACGTGGTGATC 59.306 50.000 32.66 0.00 35.23 2.92
544 545 2.431057 GTCTAATCCTCCACGTGGTGAT 59.569 50.000 32.66 29.08 35.23 3.06
545 546 1.822990 GTCTAATCCTCCACGTGGTGA 59.177 52.381 32.66 28.34 35.23 4.02
546 547 1.469251 CGTCTAATCCTCCACGTGGTG 60.469 57.143 32.74 29.28 36.34 4.17
547 548 0.815734 CGTCTAATCCTCCACGTGGT 59.184 55.000 32.74 16.78 36.34 4.16
548 549 1.100510 TCGTCTAATCCTCCACGTGG 58.899 55.000 29.26 29.26 33.89 4.94
549 550 3.116300 CAATCGTCTAATCCTCCACGTG 58.884 50.000 9.08 9.08 33.89 4.49
550 551 2.100916 CCAATCGTCTAATCCTCCACGT 59.899 50.000 0.00 0.00 33.89 4.49
551 552 2.545952 CCCAATCGTCTAATCCTCCACG 60.546 54.545 0.00 0.00 0.00 4.94
552 553 2.224305 CCCCAATCGTCTAATCCTCCAC 60.224 54.545 0.00 0.00 0.00 4.02
553 554 2.047061 CCCCAATCGTCTAATCCTCCA 58.953 52.381 0.00 0.00 0.00 3.86
554 555 2.300437 CTCCCCAATCGTCTAATCCTCC 59.700 54.545 0.00 0.00 0.00 4.30
555 556 2.300437 CCTCCCCAATCGTCTAATCCTC 59.700 54.545 0.00 0.00 0.00 3.71
556 557 2.330216 CCTCCCCAATCGTCTAATCCT 58.670 52.381 0.00 0.00 0.00 3.24
557 558 1.348036 CCCTCCCCAATCGTCTAATCC 59.652 57.143 0.00 0.00 0.00 3.01
558 559 1.348036 CCCCTCCCCAATCGTCTAATC 59.652 57.143 0.00 0.00 0.00 1.75
559 560 1.061657 TCCCCTCCCCAATCGTCTAAT 60.062 52.381 0.00 0.00 0.00 1.73
560 561 0.340558 TCCCCTCCCCAATCGTCTAA 59.659 55.000 0.00 0.00 0.00 2.10
561 562 0.398098 GTCCCCTCCCCAATCGTCTA 60.398 60.000 0.00 0.00 0.00 2.59
562 563 1.689582 GTCCCCTCCCCAATCGTCT 60.690 63.158 0.00 0.00 0.00 4.18
563 564 2.743179 GGTCCCCTCCCCAATCGTC 61.743 68.421 0.00 0.00 0.00 4.20
564 565 2.691252 GGTCCCCTCCCCAATCGT 60.691 66.667 0.00 0.00 0.00 3.73
565 566 3.861797 CGGTCCCCTCCCCAATCG 61.862 72.222 0.00 0.00 0.00 3.34
566 567 2.366435 TCGGTCCCCTCCCCAATC 60.366 66.667 0.00 0.00 0.00 2.67
567 568 2.691252 GTCGGTCCCCTCCCCAAT 60.691 66.667 0.00 0.00 0.00 3.16
570 571 4.735599 AAGGTCGGTCCCCTCCCC 62.736 72.222 0.00 0.00 36.75 4.81
571 572 3.400054 CAAGGTCGGTCCCCTCCC 61.400 72.222 0.00 0.00 36.75 4.30
572 573 3.400054 CCAAGGTCGGTCCCCTCC 61.400 72.222 0.00 0.00 36.75 4.30
573 574 3.400054 CCCAAGGTCGGTCCCCTC 61.400 72.222 0.00 0.00 36.75 4.30
574 575 4.265507 ACCCAAGGTCGGTCCCCT 62.266 66.667 0.00 0.00 36.75 4.79
575 576 4.029809 CACCCAAGGTCGGTCCCC 62.030 72.222 0.00 0.00 31.02 4.81
576 577 4.717313 GCACCCAAGGTCGGTCCC 62.717 72.222 0.00 0.00 31.02 4.46
613 614 6.608808 AGGATTGCAGGAATTAATTAAGTGCT 59.391 34.615 13.09 13.09 32.24 4.40
614 615 6.809869 AGGATTGCAGGAATTAATTAAGTGC 58.190 36.000 16.54 16.54 0.00 4.40
615 616 7.286316 AGGAGGATTGCAGGAATTAATTAAGTG 59.714 37.037 2.34 0.57 0.00 3.16
616 617 7.357471 AGGAGGATTGCAGGAATTAATTAAGT 58.643 34.615 0.00 0.32 0.00 2.24
635 641 3.438131 AGATGGGGTTGAATAGGAGGA 57.562 47.619 0.00 0.00 0.00 3.71
657 663 5.248640 GTTGAATGGATCTGAGGAACTGAA 58.751 41.667 0.00 0.00 41.55 3.02
668 674 8.801882 TTTCTTAATTACCGTTGAATGGATCT 57.198 30.769 11.00 0.00 0.00 2.75
714 720 9.321562 TGACCAAACGGAATACTCTAAATATTC 57.678 33.333 0.00 0.00 38.02 1.75
741 747 7.826690 TGTTAATTATCAAGGCTTTGGAAGAC 58.173 34.615 8.88 5.36 36.52 3.01
768 774 3.175152 CCTTCATCGAGACGAAGACTTG 58.825 50.000 18.57 3.74 40.94 3.16
769 775 2.416162 GCCTTCATCGAGACGAAGACTT 60.416 50.000 18.57 0.00 40.94 3.01
770 776 1.133407 GCCTTCATCGAGACGAAGACT 59.867 52.381 18.57 0.00 40.94 3.24
836 842 6.017109 CGGCTATTAACTGAAGGTGCAATATT 60.017 38.462 0.00 0.00 0.00 1.28
880 887 2.808543 GAGTTCAGTTGGTACTTGCTGG 59.191 50.000 9.81 0.00 30.26 4.85
945 952 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
946 953 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
947 954 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
948 955 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
949 956 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
950 957 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
951 958 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
952 959 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
953 960 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
954 961 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
955 962 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
956 963 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
957 964 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
958 965 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
959 966 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
960 967 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
961 968 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
962 969 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
963 970 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
964 971 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
965 972 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
966 973 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
967 974 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
968 975 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
969 976 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
970 977 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
971 978 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
972 979 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
973 980 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
974 981 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1431 1441 1.974236 CTGAGGAGGTTGAAGGTCTGT 59.026 52.381 0.00 0.00 0.00 3.41
1855 1883 2.125350 GTCTTCTGCGGCTCCCAG 60.125 66.667 0.00 0.00 0.00 4.45
1856 1884 3.706373 GGTCTTCTGCGGCTCCCA 61.706 66.667 0.00 0.00 0.00 4.37
1857 1885 4.475135 GGGTCTTCTGCGGCTCCC 62.475 72.222 0.00 0.28 0.00 4.30
1859 1887 2.185608 GAGGGTCTTCTGCGGCTC 59.814 66.667 0.00 0.00 0.00 4.70
1861 1889 2.221906 TTACGAGGGTCTTCTGCGGC 62.222 60.000 0.00 0.00 0.00 6.53
1862 1890 0.458025 GTTACGAGGGTCTTCTGCGG 60.458 60.000 0.00 0.00 0.00 5.69
1864 1892 0.606604 TGGTTACGAGGGTCTTCTGC 59.393 55.000 0.00 0.00 0.00 4.26
2034 2062 1.445942 CACCCCTACGATGCGGAAT 59.554 57.895 0.00 0.00 0.00 3.01
2223 2251 0.389296 CGCCGTGTGTGATCCTGTTA 60.389 55.000 0.00 0.00 0.00 2.41
2379 2410 1.714541 ATCTCATCGCCATCTCCACT 58.285 50.000 0.00 0.00 0.00 4.00
2631 2665 1.000955 TGAGCCGAGTTCTCCAACTTC 59.999 52.381 0.00 0.00 43.37 3.01
2632 2666 1.048601 TGAGCCGAGTTCTCCAACTT 58.951 50.000 0.00 0.00 43.37 2.66
2633 2667 1.048601 TTGAGCCGAGTTCTCCAACT 58.951 50.000 0.00 0.00 46.21 3.16
3100 4411 1.267806 GCATGGTTTGTGGACTGTCTG 59.732 52.381 7.85 0.00 0.00 3.51
3298 4621 2.437897 CCTCCAAAGGCCTGCTGT 59.562 61.111 5.69 0.00 35.37 4.40
3541 4865 2.962569 CGGTGCAAGGAGTCGAGA 59.037 61.111 0.00 0.00 0.00 4.04
3598 4926 5.997385 AGCAGTACGAACAAATACCAAAAG 58.003 37.500 0.00 0.00 0.00 2.27
3626 4954 9.533253 CAATTACCAAAAGTGAAAGTGAAAGAT 57.467 29.630 0.00 0.00 0.00 2.40
3777 5107 5.440610 ACTTGGAATCTGTGGAATGGATAC 58.559 41.667 0.00 0.00 0.00 2.24
4439 5787 8.470805 ACAACATGATTACTGAGTAGACTAAGG 58.529 37.037 0.00 0.00 0.00 2.69
4443 5791 8.589338 AGAAACAACATGATTACTGAGTAGACT 58.411 33.333 0.00 0.00 0.00 3.24
4449 5797 8.323854 CGACATAGAAACAACATGATTACTGAG 58.676 37.037 0.00 0.00 0.00 3.35
4450 5798 7.817478 ACGACATAGAAACAACATGATTACTGA 59.183 33.333 0.00 0.00 0.00 3.41
4455 5803 9.161629 TGATTACGACATAGAAACAACATGATT 57.838 29.630 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.